Query psy7417
Match_columns 372
No_of_seqs 198 out of 341
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 17:44:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3634|consensus 100.0 2.3E-53 4.9E-58 412.7 18.2 237 28-277 85-328 (361)
2 KOG3977|consensus 99.9 1.9E-22 4.1E-27 185.8 8.3 145 132-309 50-199 (221)
3 PF00992 Troponin: Troponin; 99.8 4.6E-20 9.9E-25 160.5 5.0 102 132-259 7-108 (132)
4 KOG3634|consensus 99.2 7.2E-11 1.6E-15 116.7 10.7 211 8-241 90-312 (361)
5 PF00992 Troponin: Troponin; 99.1 2.2E-10 4.7E-15 100.2 5.7 128 15-181 1-132 (132)
6 PTZ00266 NIMA-related protein 96.0 0.074 1.6E-06 60.4 12.6 15 275-289 775-789 (1021)
7 KOG1029|consensus 95.8 0.21 4.5E-06 55.7 14.6 20 269-288 565-584 (1118)
8 PTZ00266 NIMA-related protein 95.2 0.23 4.9E-06 56.6 12.6 8 51-58 469-476 (1021)
9 KOG1029|consensus 90.9 4.9 0.00011 45.4 13.8 52 164-215 482-533 (1118)
10 KOG1144|consensus 90.7 2.8 6.2E-05 47.2 11.9 25 46-70 216-240 (1064)
11 PF11600 CAF-1_p150: Chromatin 90.1 14 0.0003 34.7 14.5 8 89-96 162-169 (216)
12 PF09726 Macoilin: Transmembra 83.9 58 0.0013 36.3 16.9 36 180-215 620-655 (697)
13 KOG2412|consensus 83.6 53 0.0011 36.0 15.9 25 161-185 344-369 (591)
14 KOG4364|consensus 82.1 39 0.00085 37.9 14.5 33 289-324 480-513 (811)
15 KOG0163|consensus 74.1 57 0.0012 37.5 13.0 14 246-259 1191-1204(1259)
16 KOG2072|consensus 73.9 1.8E+02 0.0038 33.8 16.7 54 37-95 557-610 (988)
17 PF07946 DUF1682: Protein of u 73.8 18 0.00038 36.0 8.5 15 91-105 304-318 (321)
18 KOG3054|consensus 73.0 25 0.00053 35.2 9.1 19 87-105 155-173 (299)
19 PRK09510 tolA cell envelope in 68.3 1.5E+02 0.0032 31.1 13.9 24 28-51 85-108 (387)
20 KOG2072|consensus 67.5 52 0.0011 37.8 11.1 52 39-91 774-825 (988)
21 PLN03086 PRLI-interacting fact 67.1 42 0.0009 36.7 10.1 27 45-71 4-30 (567)
22 KOG2412|consensus 64.2 1.5E+02 0.0033 32.7 13.4 38 175-212 301-338 (591)
23 PF06098 Radial_spoke_3: Radia 63.2 77 0.0017 31.9 10.4 25 41-65 150-178 (291)
24 KOG1144|consensus 63.0 59 0.0013 37.3 10.4 15 145-159 290-305 (1064)
25 PF10044 Ret_tiss: Retinal tis 59.6 8.1 0.00018 33.0 2.6 24 164-187 54-77 (95)
26 KOG4364|consensus 54.3 1.4E+02 0.003 33.8 11.2 30 78-107 310-339 (811)
27 TIGR02794 tolA_full TolA prote 51.2 2.5E+02 0.0055 28.7 12.0 21 34-54 79-99 (346)
28 PF11600 CAF-1_p150: Chromatin 44.9 2.7E+02 0.0059 26.2 10.6 7 98-104 163-169 (216)
29 PF15346 ARGLU: Arginine and g 44.8 2.6E+02 0.0056 25.9 14.2 42 46-87 64-105 (149)
30 KOG4661|consensus 42.4 1.8E+02 0.0039 32.7 9.8 9 155-163 709-717 (940)
31 COG3064 TolA Membrane protein 38.0 5E+02 0.011 27.2 11.9 21 80-100 140-160 (387)
32 KOG3054|consensus 34.5 2E+02 0.0043 29.1 8.0 13 208-221 243-255 (299)
33 PF02029 Caldesmon: Caldesmon; 31.2 1.1E+02 0.0025 32.9 6.2 8 160-167 378-385 (492)
34 COG4839 FtsL Protein required 31.0 35 0.00075 30.5 2.0 47 180-226 58-109 (120)
35 PF15236 CCDC66: Coiled-coil d 29.2 4.7E+02 0.01 24.3 12.0 8 12-19 32-39 (157)
36 PF02029 Caldesmon: Caldesmon; 27.0 3.3E+02 0.0072 29.5 8.8 14 41-54 258-271 (492)
37 PF07946 DUF1682: Protein of u 25.7 3.4E+02 0.0075 27.0 8.2 11 37-47 262-272 (321)
38 KOG3654|consensus 25.0 2.2E+02 0.0047 31.5 6.9 16 96-111 447-462 (708)
39 PHA02265 hypothetical protein 24.6 32 0.00069 29.5 0.6 17 243-259 17-33 (103)
40 PLN03086 PRLI-interacting fact 23.9 3.8E+02 0.0083 29.6 8.6 15 208-222 174-188 (567)
41 KOG2357|consensus 22.5 4.2E+02 0.0091 28.5 8.3 18 89-106 410-427 (440)
42 KOG4661|consensus 21.9 8.3E+02 0.018 27.8 10.6 12 238-249 820-831 (940)
43 PF08232 Striatin: Striatin fa 21.9 3.6E+02 0.0079 23.9 6.8 50 172-221 29-78 (134)
44 PF09726 Macoilin: Transmembra 21.9 1.2E+03 0.026 26.4 12.5 21 10-30 416-436 (697)
45 TIGR02231 conserved hypothetic 20.9 4.8E+02 0.01 27.5 8.5 52 166-217 122-173 (525)
46 PF15437 PGBA_C: Plasminogen-b 20.2 4.3E+02 0.0092 22.6 6.4 33 60-92 44-76 (86)
No 1
>KOG3634|consensus
Probab=100.00 E-value=2.3e-53 Score=412.68 Aligned_cols=237 Identities=41% Similarity=0.615 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHH--HHHHhhHHHHHHHH
Q psy7417 28 LKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLE--EKRQRLEEAEKKRQ 105 (372)
Q Consensus 28 Lq~lIe~hfeqRkKEEEEL~~LKeRiEkRRaERaEqeR~raEr~k~EeERr~re~EErkrreee--E~rkR~EEeekKKq 105 (372)
|.+|++.+..+|+++|.+|..|+++|++|+.+|++.++.++++++..++|++.++++++.+... +.+.|.+++..+|+
T Consensus 85 l~ey~~~~~~~rer~E~eL~eLkekq~~r~~eR~~eE~e~~~rkr~~e~RR~~~aeerk~r~~k~de~r~r~~Eek~Rr~ 164 (361)
T KOG3634|consen 85 LGEYEDFDRIEREREEKELKELKEKQEKRKLEREEEEEELAERKRRIEERRREEAEERKIREAKEDERRIRLEEEKSRRQ 164 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888888888888888888888888888888888778877777777733332 23455666677788
Q ss_pred HHHHHHHhhhccCCCCCceeeccCCc----chhhHHHHhhhhhHHHHHHHH-HhhhhccCCCCCCCCCCHHHHHHHHHHH
Q psy7417 106 AMMAALKEQTNKSKGPNFTIQRREPG----LTLSTAQLERNKTKEQIEEEK-KIALNIRIKPLNVEGWSIHKLQAKATEL 180 (372)
Q Consensus 106 am~~a~k~~~~~~~g~nf~i~kk~~g----g~LqkAk~e~~keKeQ~eeEK-kkiLaER~kPLnIdgLsed~LrEkaKEL 180 (372)
+||++++.. ..+|.||||++++.+ |+++.|+++++++|+|++.+| ..+|+.|.+||||++|.+++|+++|++|
T Consensus 165 ~m~~~~~~~--~~~gknftvakk~a~~~~fgn~~qak~e~~mtKeQqEdakk~~l~aiRkk~~~~~~~~e~~LkeKiKEL 242 (361)
T KOG3634|consen 165 EMMAGRFAE--DDAGKNFTVAKKGAQNDGFGNIVQAKQEMGMTKEQQEDAKKKFLLAIRKKPLNISELPENDLKEKIKEL 242 (361)
T ss_pred HHHhcCcCc--ccccCcceeecccccchhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHH
Confidence 898888764 467899999999653 677778889999999999665 5566889999999999999999999999
Q ss_pred HHHHHhhhhhcccHHHHhhhhhhhHHHHHHHHhhccCCCCCCCCCCCCCCCCCcccchhhhhhCCCCCccchhhhccccc
Q psy7417 181 WETIVKLETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPPKIQVASKYERRV 260 (372)
Q Consensus 181 h~rI~kLEeEKYDLE~KvkrQkYEI~eL~~RV~DL~R~Ka~kkg~dp~~~~~~~~~~~~~a~~~~~PPki~~~Skydr~~ 260 (372)
|+|||+||++||||+.++++|+|||++|++|++|++|++++++|||| .+++++.|||+|+++||||||+
T Consensus 243 hqrI~kLE~EKyDLekR~eRQeYDlkeL~eRqrq~~r~~~~k~g~d~-----------~~v~g~~~p~k~~~~sk~drq~ 311 (361)
T KOG3634|consen 243 HQRICKLETEKYDLEKRHERQEYDLKELNERQRQVQRNSALKKGLDP-----------EEVTGRWKPPKVQISSKYDRQT 311 (361)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhccHHHHHHHHHHHHHHHHhhcCCCh-----------hhhcCCCCCceeehhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999 7999999999999999999999
Q ss_pred cCCChhhhhhhhhcchh
Q psy7417 261 DTRSYDDKKKLFEGGYL 277 (372)
Q Consensus 261 d~rs~~drr~~fe~~~~ 277 (372)
|+|||+||+.+|+++..
T Consensus 312 drr~~~~rr~~~~~~~~ 328 (361)
T KOG3634|consen 312 DRRNFGDRRYVFDNPEA 328 (361)
T ss_pred HhhhccchhhhhcCccc
Confidence 99999999999999853
No 2
>KOG3977|consensus
Probab=99.87 E-value=1.9e-22 Score=185.80 Aligned_cols=145 Identities=22% Similarity=0.297 Sum_probs=127.2
Q ss_pred chhhHHHHhhhhhHHHHHHHHHhhhhccCCCC-CCCCCCHH-HHHHHHHHHHHHHHhhhhhcccHHHHhhhhhhhHHHHH
Q psy7417 132 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPL-NVEGWSIH-KLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKII 209 (372)
Q Consensus 132 g~LqkAk~e~~keKeQ~eeEKkkiLaER~kPL-nIdgLsed-~LrEkaKELh~rI~kLEeEKYDLE~KvkrQkYEI~eL~ 209 (372)
.+|++|...+..+....+++|.+||++|..|| |+++|+.. .|+.+|.+||.+||.||+|+|||+.+|.....+|++|+
T Consensus 50 Llm~kAaedLkqqq~~kEqErqr~LaeR~i~lp~~d~l~d~g~Lq~ly~~l~arv~~leEEkYDi~~~v~qt~~EIndLt 129 (221)
T KOG3977|consen 50 LLMQKAAEDLKQQQELKEQERQRYLAERTIPLPDVDSLDDRGLLQDLYRELHARVDALEEEKYDIEAKVTQTETEINDLT 129 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCcccchHHHHHHHHHHHHHHHHHHHhhcchhheeehhhhhHHHHH
Confidence 68899988888766667789999999998887 78877765 48999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCcccchhhhhhCCCCCccchhhhccccccCCChhh---hhhhhhcchhhhhHHHHHH
Q psy7417 210 INKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPPKIQVASKYERRVDTRSYDD---KKKLFEGGYLSLTKESLEK 286 (372)
Q Consensus 210 ~RV~DL~R~Ka~kkg~dp~~~~~~~~~~~~~a~~~~~PPki~~~Skydr~~d~rs~~d---rr~~fe~~~~~~~~~~~~~ 286 (372)
+.|+|| ||||++ |.+..||+|+..+++.--+. -...|.+++++|.++..++
T Consensus 130 ikvnDL-RGKFvk-------------------------PtLkkVsks~~kf~ka~~~~k~~~k~DlRanLK~VKKed~~~ 183 (221)
T KOG3977|consen 130 IKVNDL-RGKFVK-------------------------PTLKKVSKSADKFLKALLGSKHKVKMDLRANLKQVKKEDTEK 183 (221)
T ss_pred HHHHHh-cccccC-------------------------ccHHHHHhhhHHHHHHhhccchhhhHHHHHHHHHhhhhhHHH
Confidence 999999 999998 89999999999999885443 4445999999999998877
Q ss_pred HHHHHHHhhhcccccCCCCccCC
Q psy7417 287 QYAEKVDQFGNRQKTKLPKWFGE 309 (372)
Q Consensus 287 ~~~~k~~~f~~r~k~~~p~w~~E 309 (372)
.-. +.+|...|.|.+-
T Consensus 184 e~~-------~kkk~ek~dW~K~ 199 (221)
T KOG3977|consen 184 ERP-------NKKKREKGDWRKN 199 (221)
T ss_pred hhh-------hhhcccchhhhhc
Confidence 665 5577899999864
No 3
>PF00992 Troponin: Troponin; InterPro: IPR001978 The troponin (Tn) complex regulates Ca2+ induced muscle contraction. Tn contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin [, , ].; PDB: 1J1D_C 1MXL_I 1LXF_I 2KRD_I 1J1E_F 2L1R_B 2KGB_I 1YTZ_I 1YV0_I 1VDJ_A ....
Probab=99.79 E-value=4.6e-20 Score=160.51 Aligned_cols=102 Identities=33% Similarity=0.468 Sum_probs=93.4
Q ss_pred chhhHHHHhhhhhHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhcccHHHHhhhhhhhHHHHHHH
Q psy7417 132 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKIIIN 211 (372)
Q Consensus 132 g~LqkAk~e~~keKeQ~eeEKkkiLaER~kPLnIdgLsed~LrEkaKELh~rI~kLEeEKYDLE~KvkrQkYEI~eL~~R 211 (372)
.++.+|..++..+.++.++++.+||++||||++|+|++.++|+++|++||++|+.|++++||++.++.+++|||++|+++
T Consensus 7 L~~~kA~~el~~e~~~keeek~~~L~eri~~l~~~g~~~~eL~~~~k~lh~ri~~leeEryd~E~kv~k~~~Ei~elk~k 86 (132)
T PF00992_consen 7 LLLLKAKIELHFEQRKKEEEKRRYLAERIPPLKLDGLSRAELQELCKELHERIDKLEEERYDLEEKVAKQDYEIEELKKK 86 (132)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHCCCTSS--GTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHhH
Confidence 46788988999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCCCCCCCCCCCCcccchhhhhhCCCCCccchhhhcccc
Q psy7417 212 KKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPPKIQVASKYERR 259 (372)
Q Consensus 212 V~DL~R~Ka~kkg~dp~~~~~~~~~~~~~a~~~~~PPki~~~Skydr~ 259 (372)
|+|+ +|||.+ |...-+|+|...
T Consensus 87 v~d~-rgkfkk-------------------------p~lkkvkk~~~~ 108 (132)
T PF00992_consen 87 VNDL-RGKFKK-------------------------PTLKKVKKSADA 108 (132)
T ss_dssp CCCC-CCSHCC-------------------------HHHHHHHHHHHH
T ss_pred HHHH-cccccc-------------------------hHHHHHHHHHHH
Confidence 9999 999988 788888888653
No 4
>KOG3634|consensus
Probab=99.21 E-value=7.2e-11 Score=116.69 Aligned_cols=211 Identities=25% Similarity=0.283 Sum_probs=142.3
Q ss_pred CCChhHhhhHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy7417 8 GGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQ 87 (372)
Q Consensus 8 ~g~~~~~KR~EKdl~el~~~Lq~lIe~hfeqRkKEEEEL~~LKeRiEkRRaERaEqeR~raEr~k~EeERr~re~EErkr 87 (372)
+-|...++||+++|.+ |+.+|+.||.+|+++|++|..++.+|+.||+++|+++++|..+ +++++++.++++.+
T Consensus 90 ~~~~~~rer~E~eL~e----Lkekq~~r~~eR~~eE~e~~~rkr~~e~RR~~~aeerk~r~~k---~de~r~r~~Eek~R 162 (361)
T KOG3634|consen 90 DFDRIEREREEKELKE----LKEKQEKRKLEREEEEEELAERKRRIEERRREEAEERKIREAK---EDERRIRLEEEKSR 162 (361)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhcHHHHHHHHhhHHhhhhchHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3456778899999999 7999999999999999999999999999999999999999998 67899999999998
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHhhhccCCCCCcee-eccCCc---chhhHHHHhhhhhHHHHHHHHHhhhhc-cCCC
Q psy7417 88 RDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTI-QRREPG---LTLSTAQLERNKTKEQIEEEKKIALNI-RIKP 162 (372)
Q Consensus 88 reeeE~rkR~EEeekKKqam~~a~k~~~~~~~g~nf~i-~kk~~g---g~LqkAk~e~~keKeQ~eeEKkkiLaE-R~kP 162 (372)
|......+.... .+.+..+++++|.+|.. +-.-++ ..+.+-+++..+ +.-....++++|+. .+++
T Consensus 163 r~~m~~~~~~~~---------~~gknftvakk~a~~~~fgn~~qak~e~~mtKeQqEdak-k~~l~aiRkk~~~~~~~~e 232 (361)
T KOG3634|consen 163 RQEMMAGRFAED---------DAGKNFTVAKKGAQNDGFGNIVQAKQEMGMTKEQQEDAK-KKFLLAIRKKPLNISELPE 232 (361)
T ss_pred HHHHHhcCcCcc---------cccCcceeecccccchhHHHHHHHHHHhcccHHHHHHHH-HHHHHHHHhcccccccCCH
Confidence 887777666553 33334456666665521 111111 123334433332 23345678888854 4443
Q ss_pred CCCCCCCHHHHHHHHHHH----HHHHHhhhhhcccHHHHhhhhhhhHHHHHHHHhhccCC---CCCCCCCCCCCCCCCcc
Q psy7417 163 LNVEGWSIHKLQAKATEL----WETIVKLETDKYDLEERQKRQDYDVSKIIINKKIMPSP---GQGRPGFNPRYVQTPNL 235 (372)
Q Consensus 163 LnIdgLsed~LrEkaKEL----h~rI~kLEeEKYDLE~KvkrQkYEI~eL~~RV~DL~R~---Ka~kkg~dp~~~~~~~~ 235 (372)
=++-. -..+|-+.+-.| |+--..++-..|||..-..+|.. ..|.+-++.| ..|..+..|-.|+|-+-
T Consensus 233 ~~Lke-KiKELhqrI~kLE~EKyDLekR~eRQeYDlkeL~eRqrq-----~~r~~~~k~g~d~~~v~g~~~p~k~~~~sk 306 (361)
T KOG3634|consen 233 NDLKE-KIKELHQRICKLETEKYDLEKRHERQEYDLKELNERQRQ-----VQRNSALKKGLDPEEVTGRWKPPKVQISSK 306 (361)
T ss_pred HHHHH-HHHHHHHHHHHHHHhhhhHHHHHHhhhccHHHHHHHHHH-----HHHHHHhhcCCChhhhcCCCCCceeehhhh
Confidence 33311 122343333333 55566677889999888777643 4466666553 55667888877777766
Q ss_pred cchhhh
Q psy7417 236 FNNATA 241 (372)
Q Consensus 236 ~~~~~a 241 (372)
||--..
T Consensus 307 ~drq~d 312 (361)
T KOG3634|consen 307 YDRQTD 312 (361)
T ss_pred hhhHHH
Confidence 665443
No 5
>PF00992 Troponin: Troponin; InterPro: IPR001978 The troponin (Tn) complex regulates Ca2+ induced muscle contraction. Tn contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin [, , ].; PDB: 1J1D_C 1MXL_I 1LXF_I 2KRD_I 1J1E_F 2L1R_B 2KGB_I 1YTZ_I 1YV0_I 1VDJ_A ....
Probab=99.06 E-value=2.2e-10 Score=100.16 Aligned_cols=128 Identities=29% Similarity=0.234 Sum_probs=98.0
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---hhhHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHH
Q psy7417 15 KRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRK---VMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLE 91 (372)
Q Consensus 15 KR~EKdl~el~~~Lq~lIe~hfeqRkKEEEEL~~LKeRiEkRR---aERaEqeR~raEr~k~EeERr~re~EErkrreee 91 (372)
|++.|+|.. ++..|+.||+++++++|.++.|.+||..+. ..+++.+++ ... ..+|..+.++|+-..+..
T Consensus 1 K~~lK~L~~----~kA~~el~~e~~~keeek~~~L~eri~~l~~~g~~~~eL~~~-~k~---lh~ri~~leeEryd~E~k 72 (132)
T PF00992_consen 1 KRMLKDLLL----LKAKIELHFEQRKKEEEKRRYLAERIPPLKLDGLSRAELQEL-CKE---LHERIDKLEEERYDLEEK 72 (132)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHCHHHHHHHCCCTSS--GTTSSHHHHHHH-HHH---HHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHH-HHH---HHHHHHHHHHHHHHHHHH
Confidence 689999999 699999999999999999999999999999 778887766 555 567888888888777766
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhhccCCCCCceeeccCCcchhhHHHHhhhhhHHHHH-HHHHhhhhccCCCCCCCCCCH
Q psy7417 92 EKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIE-EEKKIALNIRIKPLNVEGWSI 170 (372)
Q Consensus 92 E~rkR~EEeekKKqam~~a~k~~~~~~~g~nf~i~kk~~gg~LqkAk~e~~keKeQ~e-eEKkkiLaER~kPLnIdgLse 170 (372)
..+...|.+ .++.++.-.. |+-+.++. ..++.+++.+..||+++|++.
T Consensus 73 v~k~~~Ei~---------elk~kv~d~r----------------------gkfkkp~lkkvkk~~~~~~~~~l~~k~~~~ 121 (132)
T PF00992_consen 73 VAKQDYEIE---------ELKKKVNDLR----------------------GKFKKPTLKKVKKSADAMRRKLLGIKHKVS 121 (132)
T ss_dssp HHHHHHHHH---------HHCCCCCCCC----------------------CSHCCHHHHHHHHHHHHHHHHHHCTTCSHH
T ss_pred HHHhcccHH---------HHHhHHHHHc----------------------ccccchHHHHHHHHHHHHHHhhhCcccccH
Confidence 665554443 3322221111 11134444 568899999999999999999
Q ss_pred HHHHHHHHHHH
Q psy7417 171 HKLQAKATELW 181 (372)
Q Consensus 171 d~LrEkaKELh 181 (372)
.+|++.++++|
T Consensus 122 ~~lr~~lK~vk 132 (132)
T PF00992_consen 122 MDLRANLKEVK 132 (132)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhccC
Confidence 99999999998
No 6
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=96.00 E-value=0.074 Score=60.37 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=7.4
Q ss_pred chhhhhHHHHHHHHH
Q psy7417 275 GYLSLTKESLEKQYA 289 (372)
Q Consensus 275 ~~~~~~~~~~~~~~~ 289 (372)
+.+.+.++.|...+.
T Consensus 775 ~~~~~~~~~~~~~~~ 789 (1021)
T PTZ00266 775 NAKEMYKEAVNPICS 789 (1021)
T ss_pred hHHHHHhhhccchhc
Confidence 344455555555554
No 7
>KOG1029|consensus
Probab=95.82 E-value=0.21 Score=55.66 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=11.1
Q ss_pred hhhhhcchhhhhHHHHHHHH
Q psy7417 269 KKLFEGGYLSLTKESLEKQY 288 (372)
Q Consensus 269 r~~fe~~~~~~~~~~~~~~~ 288 (372)
-..|.+.++.|+.++.-++.
T Consensus 565 idi~n~qlkelk~~~~~q~l 584 (1118)
T KOG1029|consen 565 IDIFNNQLKELKEDVNSQQL 584 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 34566666666655444443
No 8
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=95.17 E-value=0.23 Score=56.63 Aligned_cols=8 Identities=13% Similarity=0.505 Sum_probs=2.9
Q ss_pred HHHHHHHh
Q psy7417 51 EKQAKRKV 58 (372)
Q Consensus 51 eRiEkRRa 58 (372)
+|+|+.+.
T Consensus 469 er~Erer~ 476 (1021)
T PTZ00266 469 ERLERERM 476 (1021)
T ss_pred HHHHHHHH
Confidence 33333333
No 9
>KOG1029|consensus
Probab=90.90 E-value=4.9 Score=45.43 Aligned_cols=52 Identities=25% Similarity=0.285 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhhcccHHHHhhhhhhhHHHHHHHHhhc
Q psy7417 164 NVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKIIINKKIM 215 (372)
Q Consensus 164 nIdgLsed~LrEkaKELh~rI~kLEeEKYDLE~KvkrQkYEI~eL~~RV~DL 215 (372)
++.-+..++|+..++|+.+.+.+|--|+-.|+.+++....-...-+.|+..|
T Consensus 482 e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L 533 (1118)
T KOG1029|consen 482 ELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSEL 533 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHH
Confidence 3333345679999999999999999999999998876655444444444443
No 10
>KOG1144|consensus
Probab=90.73 E-value=2.8 Score=47.21 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Q psy7417 46 LKRLKEKQAKRKVMRAEEEQKMAQR 70 (372)
Q Consensus 46 L~~LKeRiEkRRaERaEqeR~raEr 70 (372)
+.++++-.++++.++++|.|.+.|+
T Consensus 216 v~~~qe~La~~qe~eE~qkreeEE~ 240 (1064)
T KOG1144|consen 216 VRAMQEALAKRQEEEERQKREEEER 240 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666777776666665554444
No 11
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=90.11 E-value=14 Score=34.71 Aligned_cols=8 Identities=50% Similarity=0.709 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q psy7417 89 DLEEKRQR 96 (372)
Q Consensus 89 eeeE~rkR 96 (372)
.+++.+++
T Consensus 162 keeekr~~ 169 (216)
T PF11600_consen 162 KEEEKRKK 169 (216)
T ss_pred HHHHHHhh
Confidence 33334444
No 12
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=83.90 E-value=58 Score=36.29 Aligned_cols=36 Identities=6% Similarity=0.149 Sum_probs=25.6
Q ss_pred HHHHHHhhhhhcccHHHHhhhhhhhHHHHHHHHhhc
Q psy7417 180 LWETIVKLETDKYDLEERQKRQDYDVSKIIINKKIM 215 (372)
Q Consensus 180 Lh~rI~kLEeEKYDLE~KvkrQkYEI~eL~~RV~DL 215 (372)
||..|...--+-=.++-.+..++.||.+|+.+|.+|
T Consensus 620 LfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 620 LFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343333333333356778889999999999999998
No 13
>KOG2412|consensus
Probab=83.65 E-value=53 Score=36.01 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=16.0
Q ss_pred CCC-CCCCCCHHHHHHHHHHHHHHHH
Q psy7417 161 KPL-NVEGWSIHKLQAKATELWETIV 185 (372)
Q Consensus 161 kPL-nIdgLsed~LrEkaKELh~rI~ 185 (372)
+|| .|+..+...|+..-..||+-+.
T Consensus 344 ~~~~qis~~~~q~L~qI~dkl~s~~~ 369 (591)
T KOG2412|consen 344 PPFSQISKSNGQVLRQIFDKLDSLFG 369 (591)
T ss_pred CChhhhhhccHHHHHHHHHHHHHHhc
Confidence 566 6777777667666555555543
No 14
>KOG4364|consensus
Probab=82.08 E-value=39 Score=37.89 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=18.3
Q ss_pred HHHHHhhhcccccCCCCccCCCCCC-CCCCCCCchHh
Q psy7417 289 AEKVDQFGNRQKTKLPKWFGERPGK-KKDAPESPEEE 324 (372)
Q Consensus 289 ~~k~~~f~~r~k~~~p~w~~ErpgK-k~~~~~~pe~e 324 (372)
..|+=||-. ..-|.++|--|.| +.--+++|=-.
T Consensus 480 KaKlLqF~~---NrRP~YyGTWrKKS~~VsarrPlAq 513 (811)
T KOG4364|consen 480 KAKLLQFDK---NRRPGYYGTWRKKSQVVSARRPLAQ 513 (811)
T ss_pred HHHHhhhcc---ccCCcccccccccccccccCCcccc
Confidence 446667765 3457777776644 33344555433
No 15
>KOG0163|consensus
Probab=74.08 E-value=57 Score=37.49 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=6.4
Q ss_pred CCCccchhhhcccc
Q psy7417 246 YPPKIQVASKYERR 259 (372)
Q Consensus 246 ~PPki~~~Skydr~ 259 (372)
-||-+-||-+=|-|
T Consensus 1191 kpP~lLvAGkDDmq 1204 (1259)
T KOG0163|consen 1191 KPPILLVAGKDDMQ 1204 (1259)
T ss_pred CCCeEEEecCchHH
Confidence 34545555444433
No 16
>KOG2072|consensus
Probab=73.89 E-value=1.8e+02 Score=33.79 Aligned_cols=54 Identities=30% Similarity=0.388 Sum_probs=29.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHH
Q psy7417 37 NQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQ 95 (372)
Q Consensus 37 eqRkKEEEEL~~LKeRiEkRRaERaEqeR~raEr~k~EeERr~re~EErkrreeeE~rk 95 (372)
....++..-+++=+.=||+|+. .. +++..++.+ ++-+.++++.++++..|++|-
T Consensus 557 ~~v~~E~krilaRk~liE~rKe-~~--E~~~~~re~--Eea~~q~~e~~~~r~aE~kRl 610 (988)
T KOG2072|consen 557 KNVDKEHKRILARKSLIEKRKE-DL--EKQNVEREA--EEAQEQAKEQRQAREAEEKRL 610 (988)
T ss_pred hcchHHHHHHHHHHHHHHHHHh-HH--HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777763 22 233444432 233445555555555555544
No 17
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=73.83 E-value=18 Score=36.00 Aligned_cols=15 Identities=33% Similarity=0.683 Sum_probs=9.3
Q ss_pred HHHHHhhHHHHHHHH
Q psy7417 91 EEKRQRLEEAEKKRQ 105 (372)
Q Consensus 91 eE~rkR~EEeekKKq 105 (372)
.++++|.+|.+++|+
T Consensus 304 peeQrK~eeKe~kk~ 318 (321)
T PF07946_consen 304 PEEQRKYEEKERKKE 318 (321)
T ss_pred HHHHHHHHHHHHHHh
Confidence 356666676666664
No 18
>KOG3054|consensus
Probab=73.00 E-value=25 Score=35.24 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=8.9
Q ss_pred hhHHHHHHHhhHHHHHHHH
Q psy7417 87 QRDLEEKRQRLEEAEKKRQ 105 (372)
Q Consensus 87 rreeeE~rkR~EEeekKKq 105 (372)
+++++..|+-.||.++|--
T Consensus 155 ~k~ee~~RkakEE~arkeh 173 (299)
T KOG3054|consen 155 LKEEEKERKAKEEEARKEH 173 (299)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3334445554455544443
No 19
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=68.26 E-value=1.5e+02 Score=31.14 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Q psy7417 28 LKEYIVEWRNQRAKEEEDLKRLKE 51 (372)
Q Consensus 28 Lq~lIe~hfeqRkKEEEEL~~LKe 51 (372)
|+.-.+.-..+|..+++.|..|..
T Consensus 85 ~~~~aeel~~~~~~eq~rlk~le~ 108 (387)
T PRK09510 85 EQQQAEELQQKQAAEQERLKQLEK 108 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445557778888888888764
No 20
>KOG2072|consensus
Probab=67.50 E-value=52 Score=37.77 Aligned_cols=52 Identities=35% Similarity=0.389 Sum_probs=29.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHH
Q psy7417 39 RAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLE 91 (372)
Q Consensus 39 RkKEEEEL~~LKeRiEkRRaERaEqeR~raEr~k~EeERr~re~EErkrreee 91 (372)
+.+-++.|.+-+.|++.|+..|-++.+. +--++.|+||.++++|+..+...+
T Consensus 774 ~~~~ea~leaer~rl~erk~~R~eerk~-~~~re~EEEr~Rr~EEe~~ae~~e 825 (988)
T KOG2072|consen 774 LKQFEARLEAERNRLAERKRARIEERKQ-AYYREIEEERARREEEEANAERQE 825 (988)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666566666666666666555 333334566666666665444433
No 21
>PLN03086 PRLI-interacting factor K; Provisional
Probab=67.06 E-value=42 Score=36.69 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHh
Q psy7417 45 DLKRLKEKQAKRKVMRAEEEQKMAQRK 71 (372)
Q Consensus 45 EL~~LKeRiEkRRaERaEqeR~raEr~ 71 (372)
||+.-.+++++...+|+++.|.+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (567)
T PLN03086 4 ELRRAREKLEREQRERKQRAKLKLERE 30 (567)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777776666653
No 22
>KOG2412|consensus
Probab=64.19 E-value=1.5e+02 Score=32.65 Aligned_cols=38 Identities=13% Similarity=0.251 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhhhhcccHHHHhhhhhhhHHHHHHHH
Q psy7417 175 AKATELWETIVKLETDKYDLEERQKRQDYDVSKIIINK 212 (372)
Q Consensus 175 EkaKELh~rI~kLEeEKYDLE~KvkrQkYEI~eL~~RV 212 (372)
.-++-.|..++.+---+-|+..=+...+-+++.++...
T Consensus 301 ~ds~m~w~~~d~i~q~k~d~v~pi~~kd~~lk~~~~~~ 338 (591)
T KOG2412|consen 301 SDSQMFWNSQDAIAQSKLDLVNPILKKDEELKNYNQSL 338 (591)
T ss_pred hHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 55666777677777778888877777777676666543
No 23
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=63.17 E-value=77 Score=31.87 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHH----HHhhhHHHHH
Q psy7417 41 KEEEDLKRLKEKQAK----RKVMRAEEEQ 65 (372)
Q Consensus 41 KEEEEL~~LKeRiEk----RRaERaEqeR 65 (372)
-||+||..|+..+.. |.++.++-+|
T Consensus 150 ~EEeEL~~lr~~q~~fe~~R~aEl~e~qr 178 (291)
T PF06098_consen 150 MEEEELAALRRQQRAFEELRNAELAEVQR 178 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999887754 4445555443
No 24
>KOG1144|consensus
Probab=63.04 E-value=59 Score=37.33 Aligned_cols=15 Identities=20% Similarity=0.142 Sum_probs=8.3
Q ss_pred HHHHHHH-HHhhhhcc
Q psy7417 145 KEQIEEE-KKIALNIR 159 (372)
Q Consensus 145 KeQ~eeE-KkkiLaER 159 (372)
..+.+++ ++..|+.-
T Consensus 290 ~~a~aea~l~~ll~sg 305 (1064)
T KOG1144|consen 290 EAALAEAFLKQLLASG 305 (1064)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 3555655 45566554
No 25
>PF10044 Ret_tiss: Retinal tissue protein; InterPro: IPR018737 Rtp is a family of proteins of approximately 112 amino acids in length which is conserved from nematodes to humans. The proposed tertiary structure is of almost entirely alpha helix interrupted only by loops located at proline residues. Three sites in the protein sequence reveal two types of possible post-translation modification. A serine residue, at position 41, is a candidate for protein kinase C phosphorylation. Glycine residues at position 69 and 91 are probable sites for acetylation by covalent amide linkage of myristate via N-myristoyl transferase. Rtp is differentially expressed in the trout retina between parr and smolt developmental stages (smoltification). It is likely to be a house-keeping protein [].
Probab=59.65 E-value=8.1 Score=32.99 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhh
Q psy7417 164 NVEGWSIHKLQAKATELWETIVKL 187 (372)
Q Consensus 164 nIdgLsed~LrEkaKELh~rI~kL 187 (372)
.+++|+.++|.++++.||+++++|
T Consensus 54 eLs~Lt~~~L~~~Ik~L~~~aYqL 77 (95)
T PF10044_consen 54 ELSSLTPDQLIEKIKKLQDEAYQL 77 (95)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999876
No 26
>KOG4364|consensus
Probab=54.25 E-value=1.4e+02 Score=33.85 Aligned_cols=30 Identities=37% Similarity=0.622 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Q psy7417 78 RQREVEEKKQRDLEEKRQRLEEAEKKRQAM 107 (372)
Q Consensus 78 r~re~EErkrreeeE~rkR~EEeekKKqam 107 (372)
...+.||+.++.++|+-++.++..+.+..|
T Consensus 310 kekEkeEKrrKdE~Ek~kKqeek~KR~k~~ 339 (811)
T KOG4364|consen 310 KEKEKEEKRRKDEQEKLKKQEEKQKRAKIM 339 (811)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444443333
No 27
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=51.22 E-value=2.5e+02 Score=28.68 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=13.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHH
Q psy7417 34 EWRNQRAKEEEDLKRLKEKQA 54 (372)
Q Consensus 34 ~hfeqRkKEEEEL~~LKeRiE 54 (372)
.-..+|..+++.|..|++|..
T Consensus 79 ~~~~~~~~eq~r~~~l~~~~~ 99 (346)
T TIGR02794 79 EAEKQRAAEQARQKELEQRAA 99 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777877744443
No 28
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=44.92 E-value=2.7e+02 Score=26.17 Aligned_cols=7 Identities=43% Similarity=0.809 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy7417 98 EEAEKKR 104 (372)
Q Consensus 98 EEeekKK 104 (372)
+++.+++
T Consensus 163 eeekr~~ 169 (216)
T PF11600_consen 163 EEEKRKK 169 (216)
T ss_pred HHHHHhh
Confidence 4443333
No 29
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=44.83 E-value=2.6e+02 Score=25.86 Aligned_cols=42 Identities=21% Similarity=0.402 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy7417 46 LKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQ 87 (372)
Q Consensus 46 L~~LKeRiEkRRaERaEqeR~raEr~k~EeERr~re~EErkr 87 (372)
|..++-|-+..+..+.+=++++.+..+.-++-|+++++|+.+
T Consensus 64 l~e~r~keEeer~~~eELe~ileen~rkvEEAQrk~aeEr~~ 105 (149)
T PF15346_consen 64 LEEARRKEEEERKKREELEKILEENRRKVEEAQRKLAEERLR 105 (149)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555555555555555433
No 30
>KOG4661|consensus
Probab=42.38 E-value=1.8e+02 Score=32.66 Aligned_cols=9 Identities=11% Similarity=-0.153 Sum_probs=4.6
Q ss_pred hhhccCCCC
Q psy7417 155 ALNIRIKPL 163 (372)
Q Consensus 155 iLaER~kPL 163 (372)
|=++|+|.+
T Consensus 709 yeqerrP~~ 717 (940)
T KOG4661|consen 709 YEQERRPRF 717 (940)
T ss_pred eccCCCCCc
Confidence 445555543
No 31
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=37.99 E-value=5e+02 Score=27.25 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=9.0
Q ss_pred HHHHHHHhhHHHHHHHhhHHH
Q psy7417 80 REVEEKKQRDLEEKRQRLEEA 100 (372)
Q Consensus 80 re~EErkrreeeE~rkR~EEe 100 (372)
+.+.|.+.+.+++.++-.+|.
T Consensus 140 k~Aae~kk~aE~a~aka~aEA 160 (387)
T COG3064 140 KAAAEQKKKAEAAKAKAAAEA 160 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433333333
No 32
>KOG3054|consensus
Probab=34.49 E-value=2e+02 Score=29.06 Aligned_cols=13 Identities=0% Similarity=-0.368 Sum_probs=6.6
Q ss_pred HHHHHhhccCCCCC
Q psy7417 208 IIINKKIMPSPGQG 221 (372)
Q Consensus 208 L~~RV~DL~R~Ka~ 221 (372)
|-.=|-|= ||||+
T Consensus 243 ~ltGVmDD-RGKfI 255 (299)
T KOG3054|consen 243 LLTGVMDD-RGKFI 255 (299)
T ss_pred hheeeecC-CCceE
Confidence 33344444 66665
No 33
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=31.16 E-value=1.1e+02 Score=32.87 Aligned_cols=8 Identities=25% Similarity=0.164 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q psy7417 160 IKPLNVEG 167 (372)
Q Consensus 160 ~kPLnIdg 167 (372)
-+|+-|+.
T Consensus 378 ~~~~~vsk 385 (492)
T PF02029_consen 378 HPPAVVSK 385 (492)
T ss_pred CCCccccc
Confidence 34544554
No 34
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=31.01 E-value=35 Score=30.51 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=38.6
Q ss_pred HHHHHHhhhhhcccHHHHhhhhhhhHHHHHHHHhhccCC-----CCCCCCCC
Q psy7417 180 LWETIVKLETDKYDLEERQKRQDYDVSKIIINKKIMPSP-----GQGRPGFN 226 (372)
Q Consensus 180 Lh~rI~kLEeEKYDLE~KvkrQkYEI~eL~~RV~DL~R~-----Ka~kkg~d 226 (372)
+...++++-.+--||+.++..|..++.+|...|+||.|+ .|-+.||.
T Consensus 58 ~q~~~yqvq~ei~~Le~kIs~q~~e~~dlkqeV~dLss~eRIldiAkk~gLk 109 (120)
T COG4839 58 VQTKAYQVQGEITDLESKISEQKTENDDLKQEVKDLSSPERILDIAKKAGLK 109 (120)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhccHHHHHHHHHHcccc
Confidence 446677788888899999999999999999999999888 34455654
No 35
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=29.21 E-value=4.7e+02 Score=24.32 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=4.6
Q ss_pred hHhhhHHH
Q psy7417 12 EFVKRQEA 19 (372)
Q Consensus 12 ~~~KR~EK 19 (372)
+|..-|..
T Consensus 32 s~LR~~ta 39 (157)
T PF15236_consen 32 SFLRGMTA 39 (157)
T ss_pred Cccccccc
Confidence 55555555
No 36
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=26.96 E-value=3.3e+02 Score=29.46 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHHHH
Q psy7417 41 KEEEDLKRLKEKQA 54 (372)
Q Consensus 41 KEEEEL~~LKeRiE 54 (372)
.+.+|+..|+.++.
T Consensus 258 ~E~eE~e~~~~~q~ 271 (492)
T PF02029_consen 258 AESEEFEKLQERQQ 271 (492)
T ss_pred hhhhHHHHHHHHHH
Confidence 44444445555443
No 37
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=25.71 E-value=3.4e+02 Score=27.04 Aligned_cols=11 Identities=36% Similarity=0.589 Sum_probs=5.1
Q ss_pred HHhhhhHHHHH
Q psy7417 37 NQRAKEEEDLK 47 (372)
Q Consensus 37 eqRkKEEEEL~ 47 (372)
..|.++.+++.
T Consensus 262 k~R~~~~~~~~ 272 (321)
T PF07946_consen 262 KNREEEEEKIL 272 (321)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 38
>KOG3654|consensus
Probab=25.02 E-value=2.2e+02 Score=31.54 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHHHH
Q psy7417 96 RLEEAEKKRQAMMAAL 111 (372)
Q Consensus 96 R~EEeekKKqam~~a~ 111 (372)
|.|=.++|...+|.-+
T Consensus 447 rqey~rrkqlklmed~ 462 (708)
T KOG3654|consen 447 RQEYERRKQLKLMEDL 462 (708)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3344445555555543
No 39
>PHA02265 hypothetical protein
Probab=24.56 E-value=32 Score=29.50 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=14.5
Q ss_pred hCCCCCccchhhhcccc
Q psy7417 243 TGKYPPKIQVASKYERR 259 (372)
Q Consensus 243 ~~~~PPki~~~Skydr~ 259 (372)
-+.+||.|.|-|||+-.
T Consensus 17 l~~~p~~v~~tsk~~a~ 33 (103)
T PHA02265 17 LHKFPKEVDITSKSTAI 33 (103)
T ss_pred hccCCCccccccchhHH
Confidence 47799999999999853
No 40
>PLN03086 PRLI-interacting factor K; Provisional
Probab=23.93 E-value=3.8e+02 Score=29.58 Aligned_cols=15 Identities=7% Similarity=0.160 Sum_probs=9.3
Q ss_pred HHHHHhhccCCCCCC
Q psy7417 208 IIINKKIMPSPGQGR 222 (372)
Q Consensus 208 L~~RV~DL~R~Ka~k 222 (372)
++++..+|..|.|+|
T Consensus 174 v~v~~~~Lpkgt~vk 188 (567)
T PLN03086 174 VEVRYIWLPKGTYAK 188 (567)
T ss_pred EEEEEeecCCCCEEE
Confidence 344445777777775
No 41
>KOG2357|consensus
Probab=22.45 E-value=4.2e+02 Score=28.46 Aligned_cols=18 Identities=50% Similarity=0.566 Sum_probs=10.1
Q ss_pred HHHHHHHhhHHHHHHHHH
Q psy7417 89 DLEEKRQRLEEAEKKRQA 106 (372)
Q Consensus 89 eeeE~rkR~EEeekKKqa 106 (372)
...|+.+|.|.++++|++
T Consensus 410 ~d~Ek~rr~EakerkR~~ 427 (440)
T KOG2357|consen 410 GDPEKQRRKEAKERKRQA 427 (440)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 334566666666666544
No 42
>KOG4661|consensus
Probab=21.95 E-value=8.3e+02 Score=27.78 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=5.6
Q ss_pred hhhhhhCCCCCc
Q psy7417 238 NATALTGKYPPK 249 (372)
Q Consensus 238 ~~~a~~~~~PPk 249 (372)
+.+-....|||.
T Consensus 820 ~seGrGlppppr 831 (940)
T KOG4661|consen 820 NSEGRGLPPPPR 831 (940)
T ss_pred ccCCCCCCCCCc
Confidence 334444455554
No 43
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=21.87 E-value=3.6e+02 Score=23.88 Aligned_cols=50 Identities=20% Similarity=0.096 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcccHHHHhhhhhhhHHHHHHHHhhccCCCCC
Q psy7417 172 KLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQG 221 (372)
Q Consensus 172 ~LrEkaKELh~rI~kLEeEKYDLE~KvkrQkYEI~eL~~RV~DL~R~Ka~ 221 (372)
+|+.++-.|-.-...++.-+.||..+++.-.|-+...+.+...+.-|..+
T Consensus 29 EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~~~~ 78 (134)
T PF08232_consen 29 EMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYGTDL 78 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 44444444444444444446799999999999999999998888555444
No 44
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.87 E-value=1.2e+03 Score=26.38 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=15.5
Q ss_pred ChhHhhhHHHhhhhHHHHHHH
Q psy7417 10 DPEFVKRQEAKSSALDEQLKE 30 (372)
Q Consensus 10 ~~~~~KR~EKdl~el~~~Lq~ 30 (372)
.++-+.|+|.|+..|..+||.
T Consensus 416 ~~~a~~rLE~dvkkLraeLq~ 436 (697)
T PF09726_consen 416 EPDAISRLEADVKKLRAELQS 436 (697)
T ss_pred ChHHHHHHHHHHHHHHHHHHh
Confidence 455667899999887777665
No 45
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.95 E-value=4.8e+02 Score=27.49 Aligned_cols=52 Identities=12% Similarity=0.057 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhcccHHHHhhhhhhhHHHHHHHHhhccC
Q psy7417 166 EGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKIIINKKIMPS 217 (372)
Q Consensus 166 dgLsed~LrEkaKELh~rI~kLEeEKYDLE~KvkrQkYEI~eL~~RV~DL~R 217 (372)
...+..+|.+...-+-..+..|.....+++.++.....+|..|..++..+..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 122 NEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3567889999999999999999999999999999999999999999998854
No 46
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=20.23 E-value=4.3e+02 Score=22.56 Aligned_cols=33 Identities=30% Similarity=0.577 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHH
Q psy7417 60 RAEEEQKMAQRKKEEEERRQREVEEKKQRDLEE 92 (372)
Q Consensus 60 RaEqeR~raEr~k~EeERr~re~EErkrreeeE 92 (372)
+.+.-+..|+++..|-+-++++-.|+.-++.+|
T Consensus 44 keEkKkAKAeqrA~EfEqRakehqErDEkElEE 76 (86)
T PF15437_consen 44 KEEKKKAKAEQRAREFEQRAKEHQERDEKELEE 76 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344443334444455555544444443
Done!