Query psy7417
Match_columns 372
No_of_seqs 198 out of 341
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 17:44:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7417.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7417hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkpa_ a.38.1.1 (A:) Myc prot 28.0 61 0.0044 23.1 5.9 59 154-215 26-85 (88)
2 d1nkpb_ a.38.1.1 (B:) Max prot 24.1 86 0.0062 22.0 6.0 57 156-215 24-80 (83)
3 d1v63a_ a.21.1.1 (A:) Nucleola 13.4 35 0.0026 24.7 1.6 42 165-206 29-70 (101)
4 d2a1ja1 a.60.2.5 (A:837-898) D 12.9 50 0.0036 22.3 2.2 34 153-186 16-56 (62)
5 d1nh2b_ a.32.1.1 (B:) Large ch 11.5 34 0.0024 23.1 0.8 42 252-294 4-46 (46)
6 d1c4ka3 d.125.1.1 (A:570-730) 7.7 92 0.0067 25.6 2.3 15 172-186 22-36 (161)
7 d2h9fa2 d.21.1.4 (A:187-395) H 7.3 33 0.0024 29.3 -0.8 39 208-255 59-97 (209)
8 d1x4ta1 a.2.15.1 (A:7-86) Pre- 6.8 2E+02 0.015 21.1 3.6 22 177-198 48-69 (80)
9 d1lwma_ a.21.1.1 (A:) NHP6a {B 6.2 1.7E+02 0.012 20.6 3.0 41 166-206 44-84 (93)
10 d1hlva2 a.4.1.7 (A:67-131) DNA 5.7 2.1E+02 0.015 19.3 3.0 18 168-185 29-46 (65)
No 1
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.99 E-value=61 Score=23.14 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=36.3
Q ss_pred hhhhccCCCCCC-CCCCHHHHHHHHHHHHHHHHhhhhhcccHHHHhhhhhhhHHHHHHHHhhc
Q psy7417 154 IALNIRIKPLNV-EGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKIIINKKIM 215 (372)
Q Consensus 154 kiLaER~kPLnI-dgLsed~LrEkaKELh~rI~kLEeEKYDLE~KvkrQkYEI~eL~~RV~DL 215 (372)
..|...+|+++. ..+|-..+-..|-+ .|..|...--.+...+.........|..++++|
T Consensus 26 ~~Lr~llP~~~~~~k~sK~~iL~~A~~---yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 85 (88)
T d1nkpa_ 26 FALRDQIPELENNEKAPKVVILKKATA---YILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHTTCGGGTTCTTCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCccCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777643 44777776666653 344444444455555555556677788888887
No 2
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.11 E-value=86 Score=22.03 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=35.2
Q ss_pred hhccCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhcccHHHHhhhhhhhHHHHHHHHhhc
Q psy7417 156 LNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKIIINKKIM 215 (372)
Q Consensus 156 LaER~kPLnIdgLsed~LrEkaKELh~rI~kLEeEKYDLE~KvkrQkYEI~eL~~RV~DL 215 (372)
|..-+|++.-..+|-..+-..|- +.|..|...--++...+....-+...|..+|..|
T Consensus 24 L~~llP~~~~~k~sK~~iL~~A~---~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L 80 (83)
T d1nkpb_ 24 LRDSVPSLQGEKASRAQILDKAT---EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHTTSGGGTTSCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCCCCCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455655445666666555554 3455555555566666666666777888888877
No 3
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.41 E-value=35 Score=24.73 Aligned_cols=42 Identities=12% Similarity=0.362 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhhcccHHHHhhhhhhhHH
Q psy7417 165 VEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVS 206 (372)
Q Consensus 165 IdgLsed~LrEkaKELh~rI~kLEeEKYDLE~KvkrQkYEI~ 206 (372)
..|++..++...|-++|..|..-+=..|.=.....+..|...
T Consensus 29 ~~~~~~~ei~k~~g~~Wk~ls~~eK~~Y~~~a~~~~~~y~~e 70 (101)
T d1v63a_ 29 LNHLPLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVH 70 (101)
T ss_dssp TTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888899998888888888877777777777654
No 4
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.89 E-value=50 Score=22.32 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=25.7
Q ss_pred HhhhhccCCCC-CCCCCCHHHHH------HHHHHHHHHHHh
Q psy7417 153 KIALNIRIKPL-NVEGWSIHKLQ------AKATELWETIVK 186 (372)
Q Consensus 153 kkiLaER~kPL-nIdgLsed~Lr------EkaKELh~rI~k 186 (372)
.+.|..+++.+ +|..+|.++|. ..|+.||+.++.
T Consensus 16 ~~~Ll~~f~Si~~l~~As~~eL~~v~G~~~~A~~i~~f~~~ 56 (62)
T d2a1ja1 16 CRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIHT 56 (62)
T ss_dssp HHHHHHHCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHhCCHHHHHHCcCcHHHHHHHHHHHhh
Confidence 34566799998 88999999984 457778887753
No 5
>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.46 E-value=34 Score=23.13 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=26.1
Q ss_pred hhhhccccccCCChhhhhhhh-hcchhhhhHHHHHHHHHHHHHh
Q psy7417 252 VASKYERRVDTRSYDDKKKLF-EGGYLSLTKESLEKQYAEKVDQ 294 (372)
Q Consensus 252 ~~Skydr~~d~rs~~drr~~f-e~~~~~~~~~~~~~~~~~k~~~ 294 (372)
+++-|...|+-=- ..=|..| ++|...-+-..|.++|..|+.|
T Consensus 4 v~~vY~~VI~dVI-~~vR~dF~~~Gvde~vL~eLk~~We~Kl~Q 46 (46)
T d1nh2b_ 4 ASRVYEIIVESVV-NEVREDFENAGIDEQTLQDLKNIWQKKLTE 46 (46)
T ss_dssp HHHHHHHHHHHHH-HHTHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHcCCcHHHHHHHHHHHHHHhcC
Confidence 4555655553221 2234444 4667777788999999988754
No 6
>d1c4ka3 d.125.1.1 (A:570-730) Ornithine decarboxylase C-terminal domain {Lactobacillus sp., strain 30a [TaxId: 1591]}
Probab=7.75 E-value=92 Score=25.60 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHh
Q psy7417 172 KLQAKATELWETIVK 186 (372)
Q Consensus 172 ~LrEkaKELh~rI~k 186 (372)
.|+++|.+||+.+.+
T Consensus 22 ~LrdLc~~mH~~~~~ 36 (161)
T d1c4ka3 22 TIRELCQELHDFYKN 36 (161)
T ss_dssp BHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 589999999999654
No 7
>d2h9fa2 d.21.1.4 (A:187-395) Hypothetical protein PA0793 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.28 E-value=33 Score=29.28 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=28.4
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCcccchhhhhhCCCCCccchhhh
Q psy7417 208 IIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPPKIQVASK 255 (372)
Q Consensus 208 L~~RV~DL~R~Ka~kkg~dp~~~~~~~~~~~~~a~~~~~PPki~~~Sk 255 (372)
|..++..+++.-+++.||-+ +..+|.++.+=|||-++|+
T Consensus 59 ll~~lE~IR~~aa~~mGL~~---------~~~~a~~~~~vPKi~lVs~ 97 (209)
T d2h9fa2 59 QLARFERIRVAGALRMGLIK---------TPEEAATRQHTPKIAFVAP 97 (209)
T ss_dssp HHHHHHHHHHHHHHHTTSCS---------SGGGGGGCCSSSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCC---------chhHhhccCCCCeEEEEeC
Confidence 55566667666677889855 2356677778899999996
No 8
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.77 E-value=2e+02 Score=21.09 Aligned_cols=22 Identities=32% Similarity=0.256 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhhhhcccHHHHh
Q psy7417 177 ATELWETIVKLETDKYDLEERQ 198 (372)
Q Consensus 177 aKELh~rI~kLEeEKYDLE~Kv 198 (372)
+.+|-+-|.+|=.+|+-+|.++
T Consensus 48 IRdLNDeINkL~reK~~WE~rI 69 (80)
T d1x4ta1 48 IRDLNDEINKLLREKGHWEVRI 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777776666554
No 9
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.23 E-value=1.7e+02 Score=20.64 Aligned_cols=41 Identities=15% Similarity=0.396 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhcccHHHHhhhhhhhHH
Q psy7417 166 EGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVS 206 (372)
Q Consensus 166 dgLsed~LrEkaKELh~rI~kLEeEKYDLE~KvkrQkYEI~ 206 (372)
.+++..++...|.++|..|..-+-..|--.....+..|...
T Consensus 44 p~~~~~ei~k~l~~~W~~ls~~eK~~y~~~a~~~k~~y~~e 84 (93)
T d1lwma_ 44 PDITFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESE 84 (93)
T ss_dssp TTSCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999988888888888764
No 10
>d1hlva2 a.4.1.7 (A:67-131) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.66 E-value=2.1e+02 Score=19.33 Aligned_cols=18 Identities=22% Similarity=0.023 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy7417 168 WSIHKLQAKATELWETIV 185 (372)
Q Consensus 168 Lsed~LrEkaKELh~rI~ 185 (372)
+|..-|+++|.+|+..|.
T Consensus 29 vs~~~i~~kA~~~a~~l~ 46 (65)
T d1hlva2 29 VKGIILKEKALRIAEELG 46 (65)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 577899999999999875
Done!