RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7417
(372 letters)
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Length = 107
Score = 65.7 bits (160), Expect = 1e-13
Identities = 26/70 (37%), Positives = 42/70 (60%)
Query: 137 AQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEE 196
++ K+ E KK L R KPLN++ + KL+ KA ELW+ + +L+T+KYD E
Sbjct: 11 KADQKRGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAE 70
Query: 197 RQKRQDYDVS 206
+ KR+ Y++
Sbjct: 71 QIKRKKYEIV 80
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Length = 106
Score = 64.6 bits (157), Expect = 2e-13
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 131 GLTLSTAQLERNKTKEQIEEEKKIA-LNIRIKPLNVEGWSIHKLQAKATELWETIVKLET 189
G AQ ER K Q E EKK L R K L ++ + +L+ KA ELW+TI LE
Sbjct: 4 GYIQKQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEA 63
Query: 190 DKYDLEERQKRQDYDVS 206
+K+DL+E+ K+Q Y+++
Sbjct: 64 EKFDLQEKFKQQKYEIN 80
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.2
Length = 133
Score = 58.0 bits (140), Expect = 1e-10
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 132 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDK 191
L L A+ E + E+ EK AL+ R +PL + G +LQ A +L + K++ ++
Sbjct: 22 LLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEER 81
Query: 192 YDLEERQKRQDYDV 205
YD+E + + ++
Sbjct: 82 YDIEAKVTKNITEI 95
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
3.30A {Homo sapiens} SCOP: h.1.25.2
Length = 180
Score = 53.0 bits (127), Expect = 1e-08
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 132 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDK 191
L L A+ E + E+ EK AL+ R +PL + G +LQ A +L + K++ ++
Sbjct: 22 LLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEER 81
Query: 192 YDLEERQKRQDYDV 205
YD+E + + ++
Sbjct: 82 YDIEAKVTKNITEI 95
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 53.9 bits (130), Expect = 4e-08
Identities = 20/153 (13%), Positives = 50/153 (32%), Gaps = 2/153 (1%)
Query: 12 EFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRK 71
++ SAL++ +E+ K ++ + L +K + +
Sbjct: 851 LTPNEIDSTWSALEKAEQEHAEA-LRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYL 909
Query: 72 KEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPG 131
E + K ++LE + E + + + ++ Q + N + E
Sbjct: 910 GSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNY-NGVPELTERK 968
Query: 132 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLN 164
T Q K+ + + +A R++ +
Sbjct: 969 DTFFAQQWTGVKSSAETYKNTLLAELERLQKIE 1001
Score = 44.7 bits (106), Expect = 4e-05
Identities = 10/99 (10%), Positives = 27/99 (27%), Gaps = 7/99 (7%)
Query: 12 EFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKE-----KQAKRKVMRAEEEQK 66
A + L+ + E ++ + DL + + ++
Sbjct: 912 NETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTF 971
Query: 67 MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQ 105
AQ+ + + E+ Q++E+
Sbjct: 972 FAQQWTGVKSSAETYKNTLLA--ELERLQKIEDLHHHHH 1008
Score = 40.8 bits (96), Expect = 7e-04
Identities = 25/213 (11%), Positives = 62/213 (29%), Gaps = 15/213 (7%)
Query: 12 EFVKRQEAKSSALDEQ-----LKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQK 66
++ ++ S Q KEY + + +E +L+ + + + E
Sbjct: 787 ASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFV 846
Query: 67 MAQRKKEEEERRQREVEEKKQRDL------EEKRQ-RLEEAEKKRQAMMAALKEQTNKSK 119
E EK +++ E KRQ ++ +K ++ L+
Sbjct: 847 APAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKS 906
Query: 120 GPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATE 179
+ E G +++ Q + + E + + L++ E
Sbjct: 907 ---VYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPE 963
Query: 180 LWETIVKLETDKYDLEERQKRQDYDVSKIIINK 212
L E ++ + + + +
Sbjct: 964 LTERKDTFFAQQWTGVKSSAETYKNTLLAELER 996
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 54.0 bits (130), Expect = 5e-08
Identities = 27/194 (13%), Positives = 60/194 (30%), Gaps = 7/194 (3%)
Query: 12 EFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRK 71
+ Q L + ++ ++ L R + Q +R
Sbjct: 841 ATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRM 900
Query: 72 KEEEERRQREVEEKKQRDLEEKRQRLE----EAEKKRQAMMAALKEQTNKSKGPNFTIQR 127
+ E ++ ++E + ++ LE + ++K K K T
Sbjct: 901 MAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST 960
Query: 128 REPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKL 187
L +L ++ + + + ++L I L E +H+ Q + + E K
Sbjct: 961 ETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE---LHQTQTEKKTIEEWADKY 1017
Query: 188 ETDKYDLEERQKRQ 201
+ + L K Q
Sbjct: 1018 KHETEQLVSELKEQ 1031
Score = 54.0 bits (130), Expect = 5e-08
Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 17/200 (8%)
Query: 16 RQEAKSSALDEQLKEYIV---EWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKK 72
R LK + +R AK E +++ + + ++ + K
Sbjct: 875 RGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVE-----RYKKLHIGLENK 929
Query: 73 EEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGL 132
+ +R+ + + K+ + L EK LE + + E+ S+ R L
Sbjct: 930 IMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSL 989
Query: 133 TLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKY 192
A+L + + Q E++ + K H+ + +EL E L+T+K
Sbjct: 990 QEEIAKLRKELHQTQTEKKTIEEWADKYK---------HETEQLVSELKEQNTLLKTEKE 1040
Query: 193 DLEERQKRQDYDVSKIIINK 212
+L R Q ++++ + K
Sbjct: 1041 ELNRRIHDQAKEITETMEKK 1060
Score = 48.6 bits (116), Expect = 2e-06
Identities = 19/141 (13%), Positives = 53/141 (37%), Gaps = 8/141 (5%)
Query: 17 QEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRL----KEKQAKRKVMRAEEEQKMAQR-- 70
Q + +L E++ + + + K D++RL +E + + + +E+ R
Sbjct: 940 QNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE 999
Query: 71 --KKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRR 128
+ + E++ E +K + + E+ L+E + L + + +
Sbjct: 1000 LHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEK 1059
Query: 129 EPGLTLSTAQLERNKTKEQIE 149
+ +L+ N + + +
Sbjct: 1060 KLVEETKQLELDLNDERLRYQ 1080
Score = 41.6 bits (98), Expect = 4e-04
Identities = 13/85 (15%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 14 VKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKE 73
+ + + + ++E +Y E ++ +E LK ++ + ++ +++ E
Sbjct: 1000 LHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEI----TE 1055
Query: 74 EEERRQREVEEKKQRDLEEKRQRLE 98
E++ E ++ + DL ++R R +
Sbjct: 1056 TMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 32.4 bits (74), Expect = 0.25
Identities = 10/68 (14%), Positives = 27/68 (39%)
Query: 12 EFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRK 71
E+ + + ++ L +LKE + ++ + + ++ + + EE K +
Sbjct: 1012 EWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELD 1071
Query: 72 KEEEERRQ 79
+E R
Sbjct: 1072 LNDERLRY 1079
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 52.9 bits (127), Expect = 1e-07
Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 20/189 (10%)
Query: 14 VKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKE 73
+K E K + L E+ + + + E + ++ + A +K E +M R +E
Sbjct: 880 LKELEQKHTQLCEEKNLLQEKLQAETELYAE-AEEMRVRLAAKKQELEEILHEMEARIEE 938
Query: 74 EEERRQREVEEKK--QRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPG 131
EEER Q+ EKK Q+ + + ++LEE E RQ + K K I E
Sbjct: 939 EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME-- 996
Query: 132 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDK 191
+ K ++ +EE ++ + + KA L + K E+
Sbjct: 997 ----DQNNKLTKERKLLEERVSDLTT-----------NLAEEEEKAKNLTKLKNKHESMI 1041
Query: 192 YDLEERQKR 200
+LE R K+
Sbjct: 1042 SELEVRLKK 1050
Score = 52.1 bits (125), Expect = 2e-07
Identities = 34/205 (16%), Positives = 88/205 (42%), Gaps = 18/205 (8%)
Query: 12 EFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRK 71
E E L + +E A+ EE+ +R ++ QA++K M+ + + +
Sbjct: 906 ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD--LEEQ 963
Query: 72 KEEEERRQREVEEKKQ------RDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTI 125
EEEE +++++ +K + +E+ +E+ K L+E+ +
Sbjct: 964 LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE 1023
Query: 126 QRREPGLTLSTAQLER--NKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWET 183
+ + LT + E ++ + ++++E+K + KL+ ++++L E
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI--------KRKLEGESSDLHEQ 1075
Query: 184 IVKLETDKYDLEERQKRQDYDVSKI 208
I +L+ +L+ + +++ ++
Sbjct: 1076 IAELQAQIAELKAQLAKKEEELQAA 1100
Score = 49.4 bits (118), Expect = 1e-06
Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 24/193 (12%)
Query: 15 KRQEAKSSALDEQLKEY---IVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRK 71
++ + + D ++K+ I+ +Q K ++ K L+E+ + AEEE+K
Sbjct: 972 QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031
Query: 72 KEEEERRQR--------EVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNF 123
K + + + EEK +++LE+ +++LE +A L+ Q + K
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA--- 1088
Query: 124 TIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWET 183
+ ++E L + A+LE +++ +K L I LQ
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS----------DLQEDLESEKAA 1138
Query: 184 IVKLETDKYDLEE 196
K E K DL E
Sbjct: 1139 RNKAEKQKRDLSE 1151
Score = 39.4 bits (92), Expect = 0.002
Identities = 36/194 (18%), Positives = 77/194 (39%), Gaps = 21/194 (10%)
Query: 12 EFVKRQEAKSSALDEQ--LKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRA-EEEQKMA 68
F KRQ+ S Q ++ ++ + L + + + M+A +EE +
Sbjct: 810 AFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRT 869
Query: 69 QRKKEEEERRQREVEEKKQRDLEEK--RQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 126
+ ++++ E +E+E+K + EEK Q +AE + A ++ + K +
Sbjct: 870 KERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK-----QE 924
Query: 127 RREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVK 186
E L + + + EEE+ L K + + + L+ + E K
Sbjct: 925 LEE--------ILHEMEARIEEEEERSQQLQAEKKKMQQQ---MLDLEEQLEEEEAARQK 973
Query: 187 LETDKYDLEERQKR 200
L+ +K + + K+
Sbjct: 974 LQLEKVTADGKIKK 987
Score = 39.4 bits (92), Expect = 0.002
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 12/101 (11%)
Query: 26 EQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKE--------EEER 77
+L+ I E + Q AK+EE+L+ + + +K+ + + E E+
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK 1136
Query: 78 RQREVEEKKQRDLEEK----RQRLEEAEKKRQAMMAALKEQ 114
R EK++RDL E+ + LE+
Sbjct: 1137 AARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSD 1177
Score = 28.3 bits (63), Expect = 5.0
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 26 EQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEK 85
L+E + + R K E+ + L E+ K E+ ++E ++ ++K
Sbjct: 1126 SDLQEDLESEKAARNKAEKQKRDLSEELEALK-TELEDTLDTTATQQELRGSDYKDDDDK 1184
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 46.3 bits (109), Expect = 4e-06
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 30 EYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRD 89
E I +WR EE KRL+E A KVM E +K + +E +R+ +VE+ K +
Sbjct: 85 ESIRKWR------EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
Query: 90 LEEKRQRLEEAE 101
+ ++ +
Sbjct: 139 RIADKAFYQQPD 150
Score = 44.0 bits (103), Expect = 2e-05
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 37 NQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEE-KRQ 95
++ +E E +++ +E+Q KR Q + ++E EK ++DLEE ++
Sbjct: 78 DRLTQEPESIRKWREEQRKR-----------LQELDAASKVMEQEWREKAKKDLEEWNQR 126
Query: 96 RLEEAEKKRQAMMAALKE 113
+ E+ EK + A K
Sbjct: 127 QSEQVEKNKINNRIADKA 144
Score = 39.8 bits (92), Expect = 5e-04
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 10 DPEFVK----RQEAKSSALDEQLKEYIVEWRNQRAKEEED-LKRLKEKQAKRKV-MRAEE 63
+PE ++ Q + LD K EWR + K+ E+ +R E+ K K+ R +
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Query: 64 EQKMAQRKKE 73
+ Q +
Sbjct: 143 KAFYQQPDAD 152
Score = 34.4 bits (78), Expect = 0.031
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 54 AKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKE 113
A+ + E E +K EE+R+R ++E +++ E+A+K + E
Sbjct: 75 AQADRLTQEPESI----RKWREEQRKR-LQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129
Query: 114 QTNKSKGPN 122
Q K+K N
Sbjct: 130 QVEKNKINN 138
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 4e-06
Identities = 62/474 (13%), Positives = 133/474 (28%), Gaps = 159/474 (33%)
Query: 24 LDEQLKEY--IVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERR--- 78
E +Y I+ + D K +++ + ++ EE + K
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQD--MPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 79 -----------QREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPN----- 122
Q+ VEE + + + ++ +++ M EQ ++ N
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 123 FTIQRREPGLTLSTA--QLERN------------KT----------KEQIEEEKKIA-LN 157
+ + R +P L L A +L KT K Q + + KI LN
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 158 IR--------IKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKR----QDY-- 203
++ ++ L ++++ T + ++ + ++ +R + Y
Sbjct: 189 LKNCNSPETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 204 ------DV------------SKIII---NKKIM----------PSPGQGRPGFNPRYVQT 232
+V KI++ K++ S P +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EV 303
Query: 233 PNLFNNATALTGKY---PPKIQ---------VASKYERRVDTRSY------DDKKKLFEG 274
+L L + P ++ +A + T D + E
Sbjct: 304 KSLL--LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 275 GYLSLTKESLEKQYAEKVDQFGNRQKTKLPK------WFGERPGKKKDAPESPEEEE--- 325
L K + +++ F +P WF + + +
Sbjct: 362 SLNVLEPAEYRKMF-DRLSVF--PPSAHIPTILLSLIWF-----------DVIKSDVMVV 407
Query: 326 ---------VKRDDEEEENPIYLKISDDEEEKEEENFMSNNATAEDFHPLIVEQ 370
V++ +E I I + + K E + H IV+
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPS-IYLELKVKLENEY--------ALHRSIVDH 452
Score = 32.5 bits (73), Expect = 0.28
Identities = 44/314 (14%), Positives = 93/314 (29%), Gaps = 81/314 (25%)
Query: 16 RQEAKS------SALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQ 69
+E + S + E +++ + W N K + + + + +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDN--------WKHVNCDKLTTII-------ESSL 363
Query: 70 RKKEEEERRQR----EVEEKKQRDLEEKRQRLEE--AEKKRQAMMAALKEQTNKSKGPNF 123
E E R+ V L + + +M + + S
Sbjct: 364 NVLEPAEYRKMFDRLSVFPP---SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS----- 415
Query: 124 TIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWET 183
++++ T+S + + K ++E E AL+ I + T +
Sbjct: 416 LVEKQPKESTISIPSIYL-ELKVKLENEY--ALHRSI---------VDHYNIPKTFDSDD 463
Query: 184 IVKLETDKY-------DLEERQKRQDYDVSKII------INKKIMPSPGQGRPGFNPRYV 230
++ D+Y L+ + + + +++ + +KI +
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD---STAWNASGSI 520
Query: 231 QTPNLFNNATALTGKYPPKIQVAS-KYERRVDTRSYDD-----KKKLFEGGYLSLTKESL 284
N Y P I KYER V+ D ++ L Y L + +L
Sbjct: 521 L--NTLQQLK----FYKPYICDNDPKYERLVNA--ILDFLPKIEENLICSKYTDLLRIAL 572
Query: 285 ----EKQYAEKVDQ 294
E + E Q
Sbjct: 573 MAEDEAIFEEAHKQ 586
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 42.9 bits (100), Expect = 1e-04
Identities = 23/139 (16%), Positives = 47/139 (33%)
Query: 17 QEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEE 76
Q + A++ +++ + E++ + E+Q AE+ +K +
Sbjct: 655 QRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSM 714
Query: 77 RRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLST 136
+ K + + + R+E QA + A + RE L +
Sbjct: 715 AVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYAR 774
Query: 137 AQLERNKTKEQIEEEKKIA 155
AQLE +K Q +
Sbjct: 775 AQLELEVSKAQQLANVEAK 793
Score = 41.3 bits (96), Expect = 5e-04
Identities = 23/144 (15%), Positives = 53/144 (36%), Gaps = 6/144 (4%)
Query: 14 VKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKE 73
V+ E + L+ + +E + + ++ +++ E QK+ + +
Sbjct: 640 VQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEA 699
Query: 74 EEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLT 133
E+ R++ E +E EAE + +A + ++K + +
Sbjct: 700 EKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAK------LKAQALAI 753
Query: 134 LSTAQLERNKTKEQIEEEKKIALN 157
+ A+LER K ++E A
Sbjct: 754 ETEAELERVKKVREMELIYARAQL 777
Score = 37.5 bits (86), Expect = 0.007
Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 3/105 (2%)
Query: 15 KRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEE 74
+ + K E E + +A+ + E E + ++ +E
Sbjct: 709 LEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREM 768
Query: 75 EERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSK 119
E R + + ++ + +Q KK + M AL T +
Sbjct: 769 ELIYAR---AQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDL 810
Score = 36.3 bits (83), Expect = 0.016
Identities = 21/145 (14%), Positives = 51/145 (35%), Gaps = 7/145 (4%)
Query: 12 EFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRK 71
E + EA+ + + + + +Q E+ + L+ + V + A+
Sbjct: 670 EAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAES- 728
Query: 72 KEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPG 131
+ E R + E + + + EAE +R + ++ +++ + ++
Sbjct: 729 RAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQ-- 786
Query: 132 LTLSTAQLERNKTKEQIEEEKKIAL 156
A +E K KE E +
Sbjct: 787 ----LANVEAKKFKEMTEALGPGTI 807
Score = 28.2 bits (62), Expect = 5.2
Identities = 22/138 (15%), Positives = 38/138 (27%), Gaps = 15/138 (10%)
Query: 16 RQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEE 75
R S D+ K R E + K + +
Sbjct: 580 RGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVD 639
Query: 76 ERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLS 135
+ V+++ + L+ Q E Q A + Q + + +
Sbjct: 640 VQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQE---------------A 684
Query: 136 TAQLERNKTKEQIEEEKK 153
+LER K +Q E EK
Sbjct: 685 RGRLERQKILDQSEAEKA 702
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 41.5 bits (96), Expect = 3e-04
Identities = 21/92 (22%), Positives = 47/92 (51%)
Query: 15 KRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEE 74
+ +A + L E ++ + +E LK+L EK +V +E+++ K +E
Sbjct: 497 ESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQE 556
Query: 75 EERRQREVEEKKQRDLEEKRQRLEEAEKKRQA 106
+E+ +E +K+ R ++ + Q L+ ++R+A
Sbjct: 557 QEQLLKEGFQKESRIMKNEIQDLQTKMRRRKA 588
Score = 31.1 bits (69), Expect = 0.60
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 26 EQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKE-------EEERR 78
+ ++ I R + + K L E Q K + M ++E+ + K+ + +
Sbjct: 483 TEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQL 542
Query: 79 QREVEEKKQRDLEEKRQRLEEAEKKRQAMM 108
+E E L+E+ Q L+E +K +M
Sbjct: 543 LKEQERTLALKLQEQEQLLKEGFQKESRIM 572
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 40.9 bits (95), Expect = 6e-04
Identities = 25/108 (23%), Positives = 61/108 (56%), Gaps = 7/108 (6%)
Query: 16 RQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEE 75
++K +L E + E+ + K+EE+++++ ++ K K E E K A+++ E+
Sbjct: 312 DPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEK----EAELKEAEKELHEK 367
Query: 76 ERRQREVEEKKQRDLEEKRQRLEE---AEKKRQAMMAALKEQTNKSKG 120
R +++ + +++ LE+K++ L++ A K+R+ L+ Q +++ G
Sbjct: 368 FDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGG 415
Score = 33.2 bits (75), Expect = 0.13
Identities = 19/131 (14%), Positives = 59/131 (45%), Gaps = 15/131 (11%)
Query: 26 EQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQR----------KKEEE 75
+L+E + + +K + + K+ + ++E++M Q + +E
Sbjct: 301 CKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEA 360
Query: 76 ERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLS 135
E+ E ++ ++ ++++++LE+ +K + A K++ ++ + + +
Sbjct: 361 EKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAE-----LLQSQGSQAGG 415
Query: 136 TAQLERNKTKE 146
+ L+R+K K+
Sbjct: 416 SQTLKRDKEKK 426
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Length = 182
Score = 38.0 bits (88), Expect = 0.002
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 132 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDK 191
L A E K E EK+ L PL++ G S+ +LQ + +L I ++ ++
Sbjct: 20 AMLQLAVTEIEKEAAAKEVEKQNYLAEHSPPLSLPG-SMQELQELSKKLHAKIDSVDEER 78
Query: 192 YDLEERQKRQDYDVSKI 208
YD E + ++ + ++ +
Sbjct: 79 YDTEVKLQKTNKELEDL 95
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 37.9 bits (87), Expect = 0.005
Identities = 20/110 (18%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 7 GGGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQK 66
+ K + + + Q++E E + K E +++++ E + K K ++ K
Sbjct: 299 TYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEK----VQKLK 354
Query: 67 MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTN 116
++ + + + ++ E + ++LEEKR++ E+ + +A L++Q +
Sbjct: 355 DSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNS 404
Score = 33.6 bits (76), Expect = 0.095
Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 1/124 (0%)
Query: 31 YIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDL 90
Y D + K + K + + EEE++ K ++ E +V E K ++
Sbjct: 290 YRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEK 349
Query: 91 EEKRQRLEEA-EKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIE 149
+K + E +++ + M L+ Q + + + + LE+ + +E
Sbjct: 350 VQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLE 409
Query: 150 EEKK 153
+ KK
Sbjct: 410 KNKK 413
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 37.7 bits (88), Expect = 0.007
Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 3/91 (3%)
Query: 12 EFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEE-EQKMAQR 70
A + L+ + E ++ + DL + + + E ++
Sbjct: 904 NETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTF 963
Query: 71 KKEEEERRQREVEEKKQ--RDLEEKRQRLEE 99
++ + E K E+ Q++E+
Sbjct: 964 FAQQWTGVKSSAETYKNTLLAELERLQKIED 994
Score = 33.1 bits (76), Expect = 0.18
Identities = 18/176 (10%), Positives = 53/176 (30%), Gaps = 11/176 (6%)
Query: 37 NQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQR---------EVEEKKQ 87
+RA E+ LK + + ++ ++ + E Q + E+ +
Sbjct: 752 EERASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPK 811
Query: 88 RDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQ 147
+ + + + + + ++ PN E + + +
Sbjct: 812 GQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELK 871
Query: 148 IEEEKKIAL--NIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQ 201
+++ + L RI + + + E ++I ++ +LE
Sbjct: 872 RQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGEC 927
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 36.2 bits (83), Expect = 0.013
Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 4/153 (2%)
Query: 12 EFVKRQEAKSSALDEQLKEY-IVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQR 70
+ + ++ +EY + R +E +KR + A + ++ EEQ Q
Sbjct: 15 AVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIE-AFNETIKIFEEQGQTQE 73
Query: 71 K--KEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRR 128
K KE ER +RE EK+ + + +RL+ + L++ N I +R
Sbjct: 74 KCSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREIDKR 133
Query: 129 EPGLTLSTAQLERNKTKEQIEEEKKIALNIRIK 161
L QL + + + + +K A +I
Sbjct: 134 MNSLKPDLMQLRKIRDQYLVWLTQKGARQRKIN 166
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 35.5 bits (82), Expect = 0.027
Identities = 12/123 (9%), Positives = 35/123 (28%), Gaps = 19/123 (15%)
Query: 8 GGDPEFVKRQEAKSS----------ALDEQLKEYIVEW------RNQRAKEEEDLKRLKE 51
GGDP ++ + K D + + +N +K + + KE
Sbjct: 13 GGDPALIRETQEKRFKDPGLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKE 72
Query: 52 KQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQR---DLEEKRQRLEEAEKKRQAMM 108
+ + + ++++ + + + + E +R +
Sbjct: 73 PVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENL 132
Query: 109 AAL 111
+
Sbjct: 133 REI 135
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 35.0 bits (81), Expect = 0.035
Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 23 ALDEQLKEYIVEW------RNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEE 76
D++ + N +K K+ KE + + ++ + E+
Sbjct: 41 EADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQ 100
Query: 77 RRQREVEEKKQR------DLEEKRQRLEEAEKKRQAMMAAL 111
Q V + KQ + + ++ E++R +M +
Sbjct: 101 VEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNV 141
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 34.1 bits (79), Expect = 0.069
Identities = 11/88 (12%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Query: 74 EEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLT 133
E E R REV + ++ + E+++ + E+ + + + + + +
Sbjct: 259 ESEPRAREVVDWRKYEQEQEKNK-EDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIK 317
Query: 134 LSTAQLERNKTKEQIEEEKKIALNIRIK 161
+ ++ ++ E L + +K
Sbjct: 318 YREKRQQQPLKPKEKLERDSNVLPVIVK 345
Score = 34.1 bits (79), Expect = 0.073
Identities = 14/79 (17%), Positives = 31/79 (39%)
Query: 25 DEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEE 84
E +V+WR ++E++ + LK + KRK + + + + R
Sbjct: 260 SEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKYR 319
Query: 85 KKQRDLEEKRQRLEEAEKK 103
+K++ K + E +
Sbjct: 320 EKRQQQPLKPKEKLERDSN 338
Score = 32.2 bits (74), Expect = 0.31
Identities = 11/82 (13%), Positives = 33/82 (40%)
Query: 84 EKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNK 143
E + R++ + R+ +E EK ++ + +++ + ++ + ++ +
Sbjct: 261 EPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKERSYIKYRE 320
Query: 144 TKEQIEEEKKIALNIRIKPLNV 165
++Q + K L L V
Sbjct: 321 KRQQQPLKPKEKLERDSNVLPV 342
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 33.4 bits (77), Expect = 0.13
Identities = 17/115 (14%), Positives = 44/115 (38%), Gaps = 29/115 (25%)
Query: 8 GGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKM 67
GGDPE +K + K R E + + + + +R + ++
Sbjct: 12 GGDPEIIKASQKK------------------RGDSVELVDEIIAEYKEWVKLRFDLDEHN 53
Query: 68 AQR---------KKEEEERRQREVEEKKQ--RDLEEKRQRLEEAEKKRQAMMAAL 111
+ + + +E + + EK++ + +E ++ EA+K ++ + +
Sbjct: 54 KKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQV 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 33.3 bits (76), Expect = 0.16
Identities = 20/168 (11%), Positives = 54/168 (32%), Gaps = 21/168 (12%)
Query: 65 QKMAQRKKEEEERRQREVE-------------EKKQRDLEEKRQRLEEAEKKRQAMMAAL 111
+ K+++ E Q + + Q L +K + L+ ++ + +
Sbjct: 1905 VLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964
Query: 112 KEQTNKSKGPNFTIQRREPGLTLSTAQL-------ERNKTKEQIEEEKKIALNIRIKPLN 164
+ ++ + + L + ++ + K + + + N
Sbjct: 1965 VQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAAN 2024
Query: 165 VEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKIIINK 212
++ A T L ++I + ++Y R+ Q S + NK
Sbjct: 2025 ELKLKQDEIVATITALEKSIATYK-EEYATLIRETEQIKTESSKVKNK 2071
Score = 30.6 bits (69), Expect = 1.2
Identities = 17/155 (10%), Positives = 50/155 (32%), Gaps = 17/155 (10%)
Query: 74 EEERRQREVEEKKQRDLEEKRQR-------LEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 126
+ + + +K+ LEE++ L + E + + + +L ++ + N
Sbjct: 1899 DFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQAN 1958
Query: 127 RREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVK 186
++ + E + + + + L+V I + KA E
Sbjct: 1959 QKLKQMVQDQQAAEIKQKDARELQVQ----------LDVRNKEIAVQKVKAYADLEKAEP 2008
Query: 187 LETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQG 221
+ ++E+ + + K + + +
Sbjct: 2009 TGPLREEVEQLENAANELKLKQDEIVATITALEKS 2043
Score = 28.7 bits (64), Expect = 3.7
Identities = 21/166 (12%), Positives = 56/166 (33%), Gaps = 17/166 (10%)
Query: 28 LKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEE---------RR 78
+ E + ++ LK+L++ +A+ K ++ QK + + E+ +
Sbjct: 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967
Query: 79 QREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQ 138
Q+ E K++ D E + +L+ K+ K++ + + +
Sbjct: 1968 QQAAEIKQK-DARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREE------VEQLE 2020
Query: 139 LERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETI 184
N+ K + +E + + L + ++
Sbjct: 2021 NAANELKLKQDEIVATITALEKSIATYKE-EYATLIRETEQIKTES 2065
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 32.9 bits (76), Expect = 0.17
Identities = 11/80 (13%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 42 EEEDLKRLKEKQAKRKVMRAEEEQKMAQR----------KKEEEERRQREVEEKKQRDLE 91
DL+ L + + ++ ++ +R EE+E + + +
Sbjct: 23 VALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEE-AK 81
Query: 92 EKRQRLEEAEKKRQAMMAAL 111
+ L E E + +A++ +
Sbjct: 82 RLEEALREKEARLEALLLQV 101
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol
3-phosphate binding, membrane protein; HET: ITP; 2.20A
{Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A*
1hyj_A
Length = 125
Score = 30.7 bits (69), Expect = 0.27
Identities = 10/58 (17%), Positives = 27/58 (46%)
Query: 73 EEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREP 130
++E R E K + ++E+ + ++ E ++K AA++E +++ +
Sbjct: 3 QDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALN 60
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 31.7 bits (71), Expect = 0.28
Identities = 15/85 (17%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 41 KEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEA 100
D L++ + + V+R + E + R ++E + L + +L E
Sbjct: 18 LSSGDAAELEQLRREAAVLREQLENAVGSHAPTRSARDIHQLEAR-IDSLAARNSKLMET 76
Query: 101 EKKRQAMMAALKEQTNKSKGPNFTI 125
K+ + + AL+E+ ++ P
Sbjct: 77 LKEARQQLLALREEVDRLGQPPSGY 101
>3plw_A Recombination enhancement function protein; HNH nuclease, DNAse,
hydrolase; 1.40A {Enterobacteria phage P1}
Length = 186
Score = 31.4 bits (70), Expect = 0.28
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 66 KMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTI 125
K ++K E+ + Q+ E+ EK E + Q M L + K K
Sbjct: 2 KTIEQKIEQCRKWQKAARERAIARQREKLADPVWRESQYQKMRDTLDRRIAKQKERPPAS 61
Query: 126 QRREPGLTLSTAQLE-RNKTKEQIEEEKKIA 155
+ R+ + + + L+ R T E+ +
Sbjct: 62 KTRKSAVKIKSRGLKGRTPTAEERRIANALG 92
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 31.6 bits (71), Expect = 0.31
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 11/76 (14%)
Query: 37 NQRAKEEEDLKRLKEKQAKRKVMRAE-----------EEQKMAQRKKEEEERRQREVEEK 85
N RA+ ++KE + + E + ++ + R +E ++
Sbjct: 183 NNRAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQRSKCGPVGSDERVKEFKQS 242
Query: 86 KQRDLEEKRQRLEEAE 101
+ +E +R AE
Sbjct: 243 LIKYMETQRSYTALAE 258
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 32.1 bits (73), Expect = 0.33
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 7/89 (7%)
Query: 36 RNQRAKEEEDLKRLKEKQAKRKV-MRAEEEQKMAQRKKEEEERRQREVEEKKQRDL--EE 92
+ Q +EE + KQ + + K + + +E V L
Sbjct: 149 KRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFP 208
Query: 93 KRQRLEEAEKKRQA----MMAALKEQTNK 117
+R R+E +K+R + A ++++ K
Sbjct: 209 RRVRVEYVKKERAGLRLPLAAWVEKEAYK 237
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 31.7 bits (72), Expect = 0.39
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 17/69 (24%)
Query: 171 HKLQAKATELWETIVKL-ETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRY 229
H + + + L ++ E D +ER Q+ + ++II+ FNP+
Sbjct: 179 HCVNSYQSNLDAIKIRAGEWDTLTEKERLPYQERKIRQVIIH-----------SNFNPK- 226
Query: 230 VQTPNLFNN 238
+ N+
Sbjct: 227 ----TVVND 231
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 31.8 bits (72), Expect = 0.41
Identities = 16/142 (11%), Positives = 50/142 (35%), Gaps = 4/142 (2%)
Query: 46 LKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQ 105
+ + R A + ++ + E+ QR ++ + E+ ++ +KR+
Sbjct: 104 FSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRK 163
Query: 106 AMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNV 165
+ + SKG F+ + L + ++ + + + N +
Sbjct: 164 LLAEVTLKTYWVSKGSAFSTSISKQETEL-SPEMISSGSWRDRPFKP---YNFLAHGVLP 219
Query: 166 EGWSIHKLQAKATELWETIVKL 187
+ +H L ++ + +++
Sbjct: 220 DSGHLHPLLKVRSQFRQIFLEM 241
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 31.7 bits (73), Expect = 0.45
Identities = 11/70 (15%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 53 QAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLE---EAEKKRQAMMA 109
+RK ++ E E++ +++K+ + + + + E + L E+ +L E E++ +
Sbjct: 405 ALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLR 464
Query: 110 ALKEQTNKSK 119
+ + ++ +
Sbjct: 465 EAQHRLDEVR 474
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 31.3 bits (71), Expect = 0.56
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 21/119 (17%)
Query: 13 FVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKK 72
VK AK L E + V L++L E K + + +
Sbjct: 1855 LVKLVTAKYQDLQENQRFVNVG-----------LEKLNESVLKVNELNKTLSISLVKSLT 1903
Query: 73 EEEERRQREVEEKKQRDLEEKRQRLEEA----------EKKRQAMMAALKEQTNKSKGP 121
E+ER ++ + E + + E++R M+ LK K
Sbjct: 1904 FEKERWLNTTKQFSKTSQELIGNCIISSIYETYFGHLNERERADMLVILKRLLGKFAVK 1962
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 31.0 bits (70), Expect = 0.64
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 56 RKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQ 114
+ V A++E + ++KKEEEERR R + K++ E++ R + + L
Sbjct: 386 QAVSEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSA 444
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 30.7 bits (68), Expect = 0.65
Identities = 24/98 (24%), Positives = 38/98 (38%)
Query: 4 DVAGGGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEE 63
GD A A Q E + R EE KRL+E A KVM E
Sbjct: 68 GATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEW 127
Query: 64 EQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAE 101
+K + +E +R+ +VE+ K + + ++ +
Sbjct: 128 REKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 165
Score = 29.1 bits (64), Expect = 1.9
Identities = 13/67 (19%), Positives = 33/67 (49%)
Query: 37 NQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQR 96
++ +E E +++ +E+Q KR + M Q +E+ ++ E +++ +E+ +
Sbjct: 93 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 152
Query: 97 LEEAEKK 103
A+K
Sbjct: 153 NRIADKA 159
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 30.7 bits (70), Expect = 0.73
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 19/109 (17%)
Query: 10 DPEFVK-----RQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEE 64
+PE VK R E + +++ + EWR LK + + +R + E
Sbjct: 10 NPELVKNDLIKRGELEKVKWVDEILKLDTEWR-------TKLKEINRLRHERNKIAVEIG 62
Query: 65 QKMAQRKKEEEERRQREVEEKKQR--DLEEKRQRLEEAEKKRQAMMAAL 111
++ +K E + + E +R +LE + EE +KK + L
Sbjct: 63 KRR--KKGEPVDELLAKSREIVKRIGELENEV---EELKKKIDYYLWRL 106
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 30.7 bits (69), Expect = 0.90
Identities = 14/92 (15%), Positives = 36/92 (39%)
Query: 15 KRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEE 74
RQ + E++K I RAKE + +++ +A + E
Sbjct: 901 NRQNKGKGEMIEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQRE 960
Query: 75 EERRQREVEEKKQRDLEEKRQRLEEAEKKRQA 106
++R + +++ + + ++ + + K+ A
Sbjct: 961 QQREAEALIKEENLNEDAAKRYIRTSLKREYA 992
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic
vesicle, alternative splicing, endocytosis,
lipid-binding, golgi apparatus, adaptor, membrane,
transport; HET: IHP; 2.59A {Rattus norvegicus} PDB:
2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 30.7 bits (69), Expect = 0.95
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 28 LKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKK 72
L +I + RN ++KE E + KE R + ++ +KK
Sbjct: 13 LAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKK 57
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 29.3 bits (66), Expect = 1.1
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 4 DVAGGGDPEFVKRQEAKSSALDEQLKEYIV----EWRNQRAKEEEDLKRLKEKQAKRKVM 59
D+ PE+ K + +S IV E+R+Q E L RL +
Sbjct: 42 DIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAM-----IK 96
Query: 60 RAEEEQKMAQRKKEEEERRQREVEEKKQR 88
E+K + + ++R + K Q+
Sbjct: 97 ELTTEKKARRPTRPTRASKERRLASKAQK 125
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 30.1 bits (68), Expect = 1.3
Identities = 11/99 (11%), Positives = 34/99 (34%), Gaps = 13/99 (13%)
Query: 8 GGDPEFVKRQEAKSSALDEQLKEYIVEWRNQ-----------RAKEEEDLKRLKEKQAKR 56
+ V + ++ E++++W ++ + LKRL +
Sbjct: 51 SLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYC--K 108
Query: 57 KVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQ 95
+ + +++ ++ E+ E++ + EE
Sbjct: 109 QFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHV 147
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 30.2 bits (67), Expect = 1.3
Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 13/197 (6%)
Query: 18 EAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEER 77
EAKS+ +++K+ + K E K +++K + + + E K +++E
Sbjct: 602 EAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIF 661
Query: 78 RQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTA 137
E + Q L+ +++ + + +
Sbjct: 662 ALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKS------------FDEF 709
Query: 138 QLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEER 197
+ +NK + EE K AL +K L + I K++ L E D + +
Sbjct: 710 KNGKNKDFSKAEETLK-ALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQA 768
Query: 198 QKRQDYDVSKIIINKKI 214
+ + V +IIN+K+
Sbjct: 769 KSDLENSVKDVIINQKV 785
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA
complex, S4 domain, alpha/beta protein, isomerase,
RNA-binding, rRNA processing; HET: FHU; 3.00A
{Escherichia coli}
Length = 290
Score = 29.5 bits (67), Expect = 1.5
Identities = 14/71 (19%), Positives = 28/71 (39%)
Query: 34 EWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEK 93
EWR+ E DL +L E + +A+ + K A K+ + + + + ++
Sbjct: 220 EWRDLTDDELIDLFKLIENSSSEVKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKR 279
Query: 94 RQRLEEAEKKR 104
+K R
Sbjct: 280 FTSPGRKKKGR 290
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory
system, hiska GHKL domain, structural genomics; 2.50A
{Caulobacter crescentus}
Length = 268
Score = 29.5 bits (67), Expect = 1.5
Identities = 6/42 (14%), Positives = 13/42 (30%)
Query: 68 AQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMA 109
+ Q L ++ L EAE+ ++ +
Sbjct: 4 SHHHHHHSSGLVPRGSHMLQSALADRSAALAEAERLKRDFVG 45
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 29.9 bits (66), Expect = 1.5
Identities = 25/188 (13%), Positives = 67/188 (35%), Gaps = 5/188 (2%)
Query: 15 KRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEE 74
+R E K ++L++ E +A E + + + + + + ++ ++++ E
Sbjct: 331 ERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLR--QLQAAKEELEQRQNE 388
Query: 75 EERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTL 134
+ + +EE K + E+ Q+LE+ + +Q ++ ++++ +Q
Sbjct: 389 LQAMMQRLEETKNMEAAER-QKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARR 447
Query: 135 STAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHK--LQAKATELWETIVKLETDKY 192
+ + +A P + + +V D+
Sbjct: 448 KQDEAAAALLAATTPQHHHVAERADTDPDHDNASDAGSESGGGDLARGPDDLVDPVADRR 507
Query: 193 DLEERQKR 200
L ER +R
Sbjct: 508 TLAERNER 515
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 29.9 bits (68), Expect = 1.6
Identities = 9/67 (13%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 48 RLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQ--------REVEEKKQRDLEEKRQRLEE 99
RL+ + E++ +++K+ + Q R+ E++ + +E+ ++ +E
Sbjct: 386 RLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKE 445
Query: 100 AEKKRQA 106
+ + +
Sbjct: 446 KQGQENS 452
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 29.8 bits (68), Expect = 1.6
Identities = 10/84 (11%), Positives = 33/84 (39%), Gaps = 13/84 (15%)
Query: 40 AKEEEDLKRLKEKQAKRKVMRAEEEQKMAQR------------KKEEEERRQREVEEKKQ 87
+ + ++ E +R+ + E ++R + ++ Q V+E K+
Sbjct: 23 KELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKE 82
Query: 88 RDLEEKRQRLEEAEKKRQAMMAAL 111
++ + L + E++ + + +
Sbjct: 83 E-IDRLEEELRKVEEELKNTLLWI 105
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE);
structural genomics, PSI-2, protein structure
initiative; 2.80A {Cupriavidus metallidurans}
Length = 359
Score = 29.3 bits (66), Expect = 1.8
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 53 QAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKK--QRDLEEKRQRLEEAEKKRQAMMAA 110
QA +A MA+R +R++ + + +RD E+ + ++A + Q A
Sbjct: 95 QANSDAAKARAAMTMARR---NLDRQRELDKSEIAAKRDFEQAQSDYDQAASESQRADAR 151
Query: 111 LK 112
L
Sbjct: 152 LA 153
>2vov_A MOPE, surface-associated protein; metal-binding protein, oxidized
tryptophan, methanotroph bacterium, kunurenine, copper
binding; HET: KYN; 1.35A {Methylococcus capsulatus} PDB:
2vox_A* 2vow_A
Length = 336
Score = 29.4 bits (65), Expect = 1.8
Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 12/79 (15%)
Query: 189 TDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPP 248
+ + + V IN KI PG G P + P P F + Y
Sbjct: 49 AEVVETFKNPGTYSSPV----INFKIASPPGPGTPIYGP-----PRDF---SGYNKSYSL 96
Query: 249 KIQVASKYERRVDTRSYDD 267
I S Y+ T+ DD
Sbjct: 97 AIGKTSYYDPTTGTKWNDD 115
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 29.5 bits (67), Expect = 1.8
Identities = 5/72 (6%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 23 ALDEQLKEYIVEW------RNQRAKEEEDLKRLKEKQAKRKVMRAEE-EQKMAQRKKE-- 73
+ ++L++ + + + L ++ ++ + + + + +K+
Sbjct: 74 STWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLT 133
Query: 74 EEERRQREVEEK 85
++ ++EE+
Sbjct: 134 LLYPKEAQLEEQ 145
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 29.0 bits (64), Expect = 2.0
Identities = 4/64 (6%), Positives = 26/64 (40%)
Query: 34 EWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEK 93
+ R +A++ + +++ + +A++ + +++ +R+ + + +
Sbjct: 18 KLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYVPAE 77
Query: 94 RQRL 97
+
Sbjct: 78 AKVA 81
Score = 27.1 bits (59), Expect = 9.1
Identities = 9/72 (12%), Positives = 33/72 (45%)
Query: 48 RLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAM 107
+++K A+ + +R + ++ + ++R+ + + ++ E + + ++KR+A
Sbjct: 8 NVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKAR 67
Query: 108 MAALKEQTNKSK 119
++K
Sbjct: 68 KTGAFYVPAEAK 79
>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_Y
Length = 293
Score = 29.4 bits (65), Expect = 2.0
Identities = 7/89 (7%), Positives = 27/89 (30%)
Query: 41 KEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEA 100
+++ ++ K + E E+ +++ KK+ + + + + + +
Sbjct: 190 RKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQRAAKAHAASAPVVEAPKKVEAPKKVDP 249
Query: 101 EKKRQAMMAALKEQTNKSKGPNFTIQRRE 129
+ + A P +
Sbjct: 250 KAAKTTPAATKATPAATKVAPKTQAAKTT 278
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 28.9 bits (65), Expect = 2.4
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 52 KQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKK 86
QA ++ + E ++ +R K +E+ ++E EK+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Length = 311
Score = 29.1 bits (66), Expect = 2.5
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 203 YDVSKI--IINKKIMPSPGQGRPGFNPRYVQTPNLFNNA 239
YD++K+ I+ K P G P PR +T + NA
Sbjct: 37 YDLNKLGSIMVKATTLHPRFGNPT--PRVAETASGMLNA 73
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 29.1 bits (64), Expect = 2.7
Identities = 7/57 (12%), Positives = 20/57 (35%)
Query: 35 WRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLE 91
+R++R K ++ + ++ E E + Q + + + + D
Sbjct: 299 FRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGG 355
Score = 27.9 bits (61), Expect = 6.5
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 42 EEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLE 98
E +RLK K + ++Q + + KE E RR +E+ + Q ++ + Q +
Sbjct: 297 ENFRSERLKRGGRKVENEDMNKDQILLE--KEAELRRMQEMIARMQAQMQMQMQGGD 351
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 28.4 bits (64), Expect = 2.9
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 19 AKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQ 65
+ S +D+ K+Y+ + + ++ L+E +V +
Sbjct: 16 PRGSHMDDLNKKYL---IDLHQHQNSSIEVLREFAEVNEVPIVDRLT 59
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 27.8 bits (61), Expect = 3.5
Identities = 14/96 (14%), Positives = 35/96 (36%)
Query: 15 KRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEE 74
+R K A D K+ RA L+ + ++ + E +K + K++
Sbjct: 58 RRLWKKVKATDIAQKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQK 117
Query: 75 EERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAA 110
+ + ++ ++ + + KK + + A
Sbjct: 118 KANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGA 153
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 28.3 bits (62), Expect = 4.3
Identities = 11/62 (17%), Positives = 27/62 (43%)
Query: 34 EWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEK 93
E + +R +++ LK L++ + K +A+ K ++ E R R + + +
Sbjct: 49 ELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAE 108
Query: 94 RQ 95
+
Sbjct: 109 PK 110
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 27.9 bits (61), Expect = 4.5
Identities = 13/71 (18%), Positives = 24/71 (33%)
Query: 49 LKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMM 108
+K ++ + + A RK +E+R +E E + + KR A
Sbjct: 12 QLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKA 71
Query: 109 AALKEQTNKSK 119
A + K
Sbjct: 72 AGSYYVEAQHK 82
Score = 27.9 bits (61), Expect = 5.2
Identities = 9/64 (14%), Positives = 24/64 (37%)
Query: 34 EWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEK 93
+ Q A E K +++ + R QK + + + +R+ + +E +
Sbjct: 21 KTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQ 80
Query: 94 RQRL 97
+ +
Sbjct: 81 HKLV 84
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 28.0 bits (62), Expect = 4.6
Identities = 11/63 (17%), Positives = 23/63 (36%)
Query: 59 MRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKS 118
+ A E ++ + + + RD EE Q++ E +A KE+ +
Sbjct: 176 LLAREVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEE 235
Query: 119 KGP 121
+
Sbjct: 236 QAE 238
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 28.3 bits (63), Expect = 4.7
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 52 KQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEK 102
QA ++ + E ++ +R K +E+ ++E EK+Q+ + E E
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 28.4 bits (63), Expect = 4.7
Identities = 12/70 (17%), Positives = 29/70 (41%)
Query: 26 EQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEK 85
+ L + + + +E+ ++RL K R E M + +++ + + +E +
Sbjct: 149 DILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVE 208
Query: 86 KQRDLEEKRQ 95
+ EE Q
Sbjct: 209 RDGMQEEAIQ 218
Score = 27.6 bits (61), Expect = 7.1
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Query: 64 EQKMAQRKK--EEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGP 121
E+ + + K E+E+R + + + E+ + LEE A E +
Sbjct: 92 ERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDIL 151
Query: 122 NFTIQRREPGLTLSTAQLERNKTKEQIEEEKK 153
N + LT Q+ R T Q E ++
Sbjct: 152 NKAVTSYNKILTEEDLQMRRLATALQKEIGER 183
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 28.4 bits (62), Expect = 4.8
Identities = 16/182 (8%), Positives = 44/182 (24%), Gaps = 12/182 (6%)
Query: 18 EAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEER 77
L + + + + + + + ++ E + A +
Sbjct: 488 NELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAK 547
Query: 78 RQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTA 137
+ + L+ L+E +K+R+ + LK + A
Sbjct: 548 TMQG--SEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDM----------TSKFLTALA 595
Query: 138 QLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEER 197
Q + E + L + K++ + R
Sbjct: 596 QDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLR 655
Query: 198 QK 199
++
Sbjct: 656 EE 657
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A*
1umb_A*
Length = 367
Score = 28.0 bits (63), Expect = 4.9
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 39 RAKEEED-------LKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLE 91
R KEE + R + R + E E+ + + + E ER +E EE E
Sbjct: 283 RPKEEVAFWRKKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPE 342
Query: 92 E 92
Sbjct: 343 W 343
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain,
transcription, RNA binding protein; 2.27A {Pseudomonas
aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5
c.55.3.13 PDB: 3bzk_A 2oce_A
Length = 785
Score = 28.3 bits (64), Expect = 5.3
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 88 RDLEEKRQRLEEAEKKRQAMMAALKEQ 114
R LEE+ + L E E++R A++A+++EQ
Sbjct: 58 RMLEERLRYLRELEERRGAILASIEEQ 84
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 27.9 bits (61), Expect = 5.6
Identities = 20/108 (18%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 12 EFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRK 71
++ + AK + +++ KE+ +W ++ + E ++ L+ A+ + ++ E+ + +
Sbjct: 98 DYYQPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRR--AQLQYVQRSEDLRARSQG 155
Query: 72 KEEEERRQREV-----EEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQ 114
E+ Q +E+++R EE + + +EAE QA + +
Sbjct: 156 SPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREANAR 203
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 28.1 bits (63), Expect = 5.6
Identities = 22/153 (14%), Positives = 43/153 (28%), Gaps = 19/153 (12%)
Query: 48 RLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAM 107
++ K K E + K + Q +VE+ + E + EE Q
Sbjct: 120 KIDGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYK 179
Query: 108 MAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEG 167
+ + K LS + E K + +I E K + +G
Sbjct: 180 KEYEELKEKIEK--------------LSKSATESIKNRRRIHGELK-TYKSPGLEVLFQG 224
Query: 168 WSIHKLQAKATELWETIVKLETDKYDLEERQKR 200
+ + + L+ +K+
Sbjct: 225 PRGSRYDEAEGRFEV----INNETEQLKAEEKK 253
>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3j16_C 3u5g_G
Length = 236
Score = 27.8 bits (61), Expect = 6.0
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 36 RNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQR 88
R QR + + LK ++ AE Q +A+R E + + + +
Sbjct: 183 RLQRKRHQRALK--VRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRASS 233
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural
P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 28.0 bits (63), Expect = 6.1
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 54 AKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEE 92
+RK +E +KM K + EE+R + E + +R E
Sbjct: 2 VRRKSCIVKEMEKM---KNKREEKRAQNSELRIKRAQEY 37
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation,
ATPase, transmembrane transport, helicase-like motor
domain; HET: ADP; 2.60A {Mycobacterium tuberculosis}
SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB:
1nl3_A
Length = 922
Score = 28.0 bits (63), Expect = 6.3
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 3 TDVAGGGDPEFVKRQEAKSSALD--EQLKEYIVEWRNQRAKEEEDLKRLKEK 52
TD+ GG+ +F+ Q + LD E +EY W ++ +E+ + ++
Sbjct: 522 TDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKE 573
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB:
3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Length = 368
Score = 27.6 bits (62), Expect = 6.4
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 39 RAKEEED-------LKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLE 91
R+KE E+ L R ++ + + EEE + ++ KEE + ++ +E ++ +
Sbjct: 282 RSKELENEWAKKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVT 341
Query: 92 E 92
+
Sbjct: 342 D 342
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 27.3 bits (60), Expect = 6.4
Identities = 13/89 (14%), Positives = 38/89 (42%)
Query: 26 EQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEK 85
E + + I + ++ + + R + ++ K + R E + ++ + + +
Sbjct: 5 ELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRII 64
Query: 86 KQRDLEEKRQRLEEAEKKRQAMMAALKEQ 114
LE +R+RL E+ +++ +K +
Sbjct: 65 ANARLEVRRKRLAIQEEIISSVLEEVKRR 93
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase,
plasmid, formylglycine, phosphodiesterase; 1.42A
{Rhizobium leguminosarum BV} PDB: 2w8s_A
Length = 543
Score = 27.8 bits (62), Expect = 7.4
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 21/48 (43%)
Query: 226 NPRYVQTPNL---------FNN------------ATALTGKYPPKIQV 252
+++TPNL F N A+ LTG Y +
Sbjct: 57 KIDFLKTPNLDRLCREGVTFRNHVTTCVPXGPARASLLTGLYLMNHRA 104
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 27.6 bits (62), Expect = 7.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 313 KKKDAPESPEEEEVKRDDEEEENPIYLKISDDEEEKEEE 351
K + E P EEE +E+E++ + ++EEEK+ +
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPK 254
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 27.6 bits (61), Expect = 7.6
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 37 NQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQR 96
N+ AK + L +++ ++ + M +R EEE + + E E ++
Sbjct: 263 NKAAKTQ--LAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEE 320
Query: 97 LEEAEKKRQA 106
+ Q+
Sbjct: 321 QKSNTAGSQS 330
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 27.6 bits (62), Expect = 7.7
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 62 EEEQKM---AQRKKEEEERRQREVEEKKQRD---------LEEKRQRLEEAEKKR-QAMM 108
+E QKM A+ E + + V+ + Q D +EE +L +K ++ +
Sbjct: 510 DEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESAL 569
Query: 109 AALKE 113
AL+
Sbjct: 570 TALET 574
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural
genomics, protein structure initiative, nysgxrc; 2.80A
{Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Length = 541
Score = 27.8 bits (62), Expect = 7.8
Identities = 19/115 (16%), Positives = 35/115 (30%)
Query: 36 RNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQ 95
+ +E L+ + + + + EE E E + + L R
Sbjct: 390 GKRTPFTDEHLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRW 449
Query: 96 RLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEE 150
R E R A +L K K EP + + A E + +++
Sbjct: 450 RKFSREWIRTAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDA 504
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 27.7 bits (61), Expect = 7.9
Identities = 13/56 (23%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 23 ALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERR 78
E L+E++ ++ +RA+ +E+ L + K++ E+E+ +A + K ++E++
Sbjct: 379 LCIETLQEFVKAFQERRAQVDEET--LDKFMVPHKLVWGEKERLVAPKPKTKQEKK 432
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation,
ribosome inhibitor, hydrolase; HET: CIT; 2.30A
{Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1
PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Length = 551
Score = 27.7 bits (60), Expect = 8.2
Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 9/98 (9%)
Query: 14 VKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKR----LKEKQAKRKVMRAEEEQKMAQ 69
+ A+ + + + +R + KQA E+ A
Sbjct: 365 LADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAAKEKSDADAA 424
Query: 70 RKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAM 107
E R+++E +++ + +E K R+
Sbjct: 425 LSSAMESRKKKEDKKR-----SAENNLNDEKNKPRKGF 457
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.307 0.127 0.344
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,635,237
Number of extensions: 350338
Number of successful extensions: 2576
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1999
Number of HSP's successfully gapped: 531
Length of query: 372
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 277
Effective length of database: 4,049,298
Effective search space: 1121655546
Effective search space used: 1121655546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (27.1 bits)