RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7417
(372 letters)
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
fragment {Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 35.5 bits (81), Expect = 0.008
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 28 LKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKK 72
L +I + RN ++KE E + KE R + ++ +KK
Sbjct: 5 LAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKK 49
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 30.5 bits (68), Expect = 0.32
Identities = 19/85 (22%), Positives = 42/85 (49%)
Query: 15 KRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEE 74
+ +A + L E ++ + +E LK+L EK +V +E+++ K +E
Sbjct: 214 ESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQE 273
Query: 75 EERRQREVEEKKQRDLEEKRQRLEE 99
+E+ +E +K+ R ++ + Q L+
Sbjct: 274 QEQLLKEGFQKESRIMKNEIQDLQT 298
Score = 28.2 bits (62), Expect = 1.6
Identities = 12/89 (13%), Positives = 36/89 (40%)
Query: 26 EQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEK 85
E + + E ++ ++ +++ E +++ ++ + + + +E E
Sbjct: 207 EVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERT 266
Query: 86 KQRDLEEKRQRLEEAEKKRQAMMAALKEQ 114
L+E+ Q L+E +K +M +
Sbjct: 267 LALKLQEQEQLLKEGFQKESRIMKNEIQD 295
Score = 27.0 bits (59), Expect = 3.9
Identities = 8/103 (7%), Positives = 42/103 (40%)
Query: 12 EFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRK 71
+ + +E + + + + + ++ + +++K+ + + +KM +
Sbjct: 197 QTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDR 256
Query: 72 KEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQ 114
+ + ++R + K Q + ++ ++ + + + L+ +
Sbjct: 257 VQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
Score = 26.6 bits (58), Expect = 4.7
Identities = 15/89 (16%), Positives = 35/89 (39%)
Query: 26 EQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEK 85
Q + + E + E + + M+ + EQ M Q+++ +E ++ E+
Sbjct: 193 LQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKM 252
Query: 86 KQRDLEEKRQRLEEAEKKRQAMMAALKEQ 114
+ ++ +++ K Q LKE
Sbjct: 253 ENDRVQLLKEQERTLALKLQEQEQLLKEG 281
Score = 26.6 bits (58), Expect = 5.5
Identities = 15/107 (14%), Positives = 38/107 (35%)
Query: 11 PEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQR 70
E + ++ + ++ I R + + K L E Q K + M ++E+ +
Sbjct: 185 KESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEH 244
Query: 71 KKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNK 117
K+ E+ + + + + +L+E E+ +
Sbjct: 245 LKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKN 291
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid
beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 29.8 bits (67), Expect = 0.35
Identities = 13/79 (16%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 37 NQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQR 96
R + + ++ +E + + K + +++ + Q +E+ E ++E ++Q+ +E R
Sbjct: 28 KHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMAR 87
Query: 97 LEE--AEKKRQAMMAALKE 113
+E +++R A+ +
Sbjct: 88 VEAMLNDRRRLALENYITA 106
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
disjunctional) {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 368
Score = 29.1 bits (64), Expect = 1.0
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 8/48 (16%)
Query: 41 KEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQ--REVEEKK 86
+ E+L R E+QA E Q + ER++ V + +
Sbjct: 3 QRTEELLRCNEQQAAELETCKE------QLFQSNMERKELHNTVMDLR 44
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 28.5 bits (63), Expect = 1.3
Identities = 6/102 (5%), Positives = 31/102 (30%), Gaps = 2/102 (1%)
Query: 15 KRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLK--EKQAKRKVMRAEEEQKMAQRKK 72
+R + + + I + + A ++ ++ ++ A + +
Sbjct: 171 ERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTR 230
Query: 73 EEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQ 114
+ +R+ + +++ R+ + ++
Sbjct: 231 YQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEAIRA 272
Score = 28.1 bits (62), Expect = 1.6
Identities = 11/91 (12%), Positives = 30/91 (32%)
Query: 16 RQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEE 75
K+ A +Q++ I + A + ++ + + E+ +
Sbjct: 189 ADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAP 248
Query: 76 ERRQREVEEKKQRDLEEKRQRLEEAEKKRQA 106
+ R + + +Q+ + + A R A
Sbjct: 249 QDRDARIAQLRQQTFTAPGEAIRAASLDRGA 279
Score = 27.7 bits (61), Expect = 2.5
Identities = 12/118 (10%), Positives = 30/118 (25%)
Query: 38 QRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRL 97
+ L + E+ ++ ++ E+K L +L
Sbjct: 108 LALDQRAALADRTLGEWAEPFFGDEQRRQRHDLERIRIANDTTLSPEQKAARLAALDAQL 167
Query: 98 EEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIA 155
E+ +QA + A ++ K + L + ++
Sbjct: 168 TPDERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDE 225
Score = 26.9 bits (59), Expect = 3.5
Identities = 11/113 (9%), Positives = 32/113 (28%)
Query: 2 KTDVAGGGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRA 61
D A GD + + EW +E+ +R ++ +
Sbjct: 91 PGDGAVLGDKLDPAAMQLALDQRAALADRTLGEWAEPFFGDEQRRQRHDLERIRIANDTT 150
Query: 62 EEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQ 114
++ A R + + + ++ ++ + A+ ++
Sbjct: 151 LSPEQKAARLAALDAQLTPDERAQQAALHAQQDAVTKIADLQKAGATPDQMRA 203
>d1j3kc_ d.117.1.1 (C:) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 326
Score = 27.7 bits (61), Expect = 2.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 329 DDEEEENPIYLKISDDEEEKEEENFMSNN 357
DDEEE++ +Y + ++EEK + + N+
Sbjct: 1 DDEEEDDFVYFNFNKEKEEKNKNSIHPND 29
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 471
Score = 27.8 bits (60), Expect = 2.5
Identities = 10/46 (21%), Positives = 25/46 (54%)
Query: 39 RAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEE 84
RA ++ ++R + + + +M EE + + + KE +E R +++
Sbjct: 402 RAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKD 447
>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding
protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}
Length = 321
Score = 27.3 bits (59), Expect = 3.2
Identities = 16/92 (17%), Positives = 42/92 (45%)
Query: 14 VKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKE 73
+ ++EA + E L+E + + +ED RL+ + A+++ + + + Q+ +
Sbjct: 7 LTQREANVKKVHENLEELQKKLDHTSFAHKEDRDRLEAQIAQKEQEQKAKLAEYDQKVQN 66
Query: 74 EEERRQREVEEKKQRDLEEKRQRLEEAEKKRQ 105
E + R+R E++ + ++ A +
Sbjct: 67 EFDARERAEREREAARGDAAAEKQRLASLLKD 98
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid
3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId:
29760]}
Length = 450
Score = 27.0 bits (58), Expect = 3.9
Identities = 7/44 (15%), Positives = 16/44 (36%)
Query: 42 EEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEK 85
E + +++ E+ +K+ + + E R V K
Sbjct: 387 EGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPK 430
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 27.0 bits (58), Expect = 4.1
Identities = 8/54 (14%), Positives = 25/54 (46%)
Query: 31 YIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEE 84
+I + + ++KR + + +V+ ++ +KM Q+ E +++ +
Sbjct: 402 FICNEWEIGMEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRP 455
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 26.6 bits (59), Expect = 4.2
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 79 QREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGL 132
Q + E+KKQ +EK+Q E EK + + + + NF ++ P L
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDG-RREQVGNFKVEP--PDL 152
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.307 0.127 0.344
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,373,024
Number of extensions: 68960
Number of successful extensions: 527
Number of sequences better than 10.0: 1
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 138
Length of query: 372
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 285
Effective length of database: 1,213,086
Effective search space: 345729510
Effective search space used: 345729510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 54 (24.8 bits)