BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy742
(713 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D93|A Chain A, Crystal Structure Of Tep1s
pdb|4D93|B Chain B, Crystal Structure Of Tep1s
pdb|4D93|C Chain C, Crystal Structure Of Tep1s
Length = 1323
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 107/453 (23%), Positives = 199/453 (43%), Gaps = 73/453 (16%)
Query: 190 VITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRN-ISLTAHVLITL--- 245
++ +A+ W+ Q G F ET + + + L RN ++LT++VL L
Sbjct: 925 MVEKALDWLASKQHSSGRFDETGKVWHKDMQGGL---------RNGVALTSYVLTALLEN 975
Query: 246 DTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAF 305
D K + ++ + +L L + +PY+++I YA+ L+ T+ + A
Sbjct: 976 DIAK-------VKHAVVIQNGMNYLSNQLAFI---NNPYDLSIATYAMMLNGHTMKKEAL 1025
Query: 306 GILTQHARSEGGLT--YWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVY 363
L + S+ YWG NQ IETTAYALL +
Sbjct: 1026 DKLIDMSISDNNKKERYWG----------TTNQ----------------IETTAYALLSF 1059
Query: 364 VSRQELLTD-PIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVSIEA 422
V ++ L P++ WL +QR G + TQDT + +KAL + + Y TV ++
Sbjct: 1060 VMAEKYLDGIPVMNWLVNQRYVTGSFPRTQDTFVGLKALTKLAEKISPSRNDY-TVQLKY 1118
Query: 423 TALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQ 482
KY ++ + + +EIP+ +++ G G+ +L++ +++++ F+ +
Sbjct: 1119 KK---NTKYFNINSEQIDVQNFLEIPEDTKKLEINVGGIGFGLLEVIYQFDLNLVNFEHR 1175
Query: 483 PPVPAFALNTRANFHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLD 542
+ NT +++ R C +I + ++S MA+++V +P+GY++ + +
Sbjct: 1176 FKLDLEKQNTGSDYELR------LRVCANYIPELTDSQSNMALIEVTLPSGYVVDRNPIS 1229
Query: 543 AYIRTRNVPNLQRARFQEQKVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIRVYDYY 602
+ N++ R+ V+ Y+ + C T R F VA + R + VYDYY
Sbjct: 1230 EQTTVNPIQNME-IRYGGTSVVLYYYKMGTERNCFTVTAYRRFKVA-LKRPAYVVVYDYY 1287
Query: 603 APERFNETIFDALPTYLL---NICEVCGSSQCP 632
T +A+ Y + N+CE+C CP
Sbjct: 1288 ------NTNLNAIKVYEVDKQNVCEICEEEDCP 1314
>pdb|2PN5|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 107/455 (23%), Positives = 199/455 (43%), Gaps = 77/455 (16%)
Query: 190 VITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRN-ISLTAHVLITLDTV 248
++ +A+ W+ Q G F + +++ L RN ++LT++VL+ L
Sbjct: 925 MVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGL---------RNGVALTSYVLMAL--- 972
Query: 249 KDLTGGLGARVSLAQSKAIKWLERNLRLLKD-FG---DPYEVAIVAYALRLSKATIAEAA 304
+A++K + +++ + L + FG + Y+++I YA+ L+ T+ E A
Sbjct: 973 --------LENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEA 1024
Query: 305 FGILTQHA--RSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLV 362
L + ++ +W P IETTAYALL
Sbjct: 1025 LNKLIDMSFIDADKNERFWN------------TTNP--------------IETTAYALLS 1058
Query: 363 YVSRQELLTD--PIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVSI 420
+V E TD P++ WL +QR G + STQDT + +KAL + + Y TV +
Sbjct: 1059 FV-MAEKYTDGIPVMNWLVNQRYVTGSFPSTQDTFVGLKALTKMAEKISPSRNDY-TVQL 1116
Query: 421 EATALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQ 480
+ KY + + + ++IP+ +++ G G+ +L++ +N+++ F+
Sbjct: 1117 KYKK---SAKYFKINSEQIDVENFVDIPEDTKKLEINVGGIGFGLLEVVYQFNLNLVNFE 1173
Query: 481 TQPPVPAFALNTRANFHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQK 540
+ + NT +++ R C +I Q RS MA+++V +P+GY++ +
Sbjct: 1174 NRFQLDLEKQNTGSDYELR------LKVCASYIPQLTDRRSNMALIEVTLPSGYVVDRNP 1227
Query: 541 LDAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIRVYD 600
+ + + + R+ V+ Y+D + C T R F VA + R + VYD
Sbjct: 1228 ISEQTKVNPIQKTE-IRYGGTSVVLYYDNMGSERNCFTLTAYRRFKVA-LKRPAYVVVYD 1285
Query: 601 YYAPERFNETIFDALPTYLL---NICEVCGSSQCP 632
YY T +A+ Y + N+CE+C CP
Sbjct: 1286 YY------NTNLNAIKVYEVDKQNLCEICDEEDCP 1314
>pdb|4D94|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 107/455 (23%), Positives = 199/455 (43%), Gaps = 77/455 (16%)
Query: 190 VITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRN-ISLTAHVLITLDTV 248
++ +A+ W+ Q G F + +++ L RN ++LT++VL+ L
Sbjct: 925 MVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGL---------RNGVALTSYVLMAL--- 972
Query: 249 KDLTGGLGARVSLAQSKAIKWLERNLRLLKD-FG---DPYEVAIVAYALRLSKATIAEAA 304
+A++K + +++ + L + FG + Y+++I YA+ L+ T+ E A
Sbjct: 973 --------LENDIAKAKHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEA 1024
Query: 305 FGILTQHA--RSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLV 362
L + ++ +W P IETTAYALL
Sbjct: 1025 LNKLIDMSFIDADKNERFWN------------TTNP--------------IETTAYALLS 1058
Query: 363 YVSRQELLTD--PIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVSI 420
+V E TD P++ WL +QR G + STQDT + +KAL + + Y TV +
Sbjct: 1059 FV-MAEKYTDGIPVMNWLVNQRYVTGSFPSTQDTFVGLKALTKMAEKISPSRNDY-TVQL 1116
Query: 421 EATALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQ 480
+ KY + + + ++IP+ +++ G G+ +L++ +N+++ F+
Sbjct: 1117 KYKK---SAKYFKINSEQIDVENFVDIPEDTKKLEINVGGIGFGLLEVVYQFNLNLVNFE 1173
Query: 481 TQPPVPAFALNTRANFHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQK 540
+ + NT +++ R C +I Q RS MA+++V +P+GY++ +
Sbjct: 1174 NRFQLDLEKQNTGSDYELR------LKVCASYIPQLTDRRSNMALIEVTLPSGYVVDRNP 1227
Query: 541 LDAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIRVYD 600
+ + + + R+ V+ Y+D + C T R F VA + R + VYD
Sbjct: 1228 ISEQTKVNPIQKTE-IRYGGTSVVLYYDNMGSERNCFTLTAYRRFKVA-LKRPAYVVVYD 1285
Query: 601 YYAPERFNETIFDALPTYLL---NICEVCGSSQCP 632
YY T +A+ Y + N+CE+C CP
Sbjct: 1286 YY------NTNLNAIKVYEVDKQNLCEICDEEDCP 1314
>pdb|4ACQ|A Chain A, Alpha-2 Macroglobulin
pdb|4ACQ|B Chain B, Alpha-2 Macroglobulin
pdb|4ACQ|C Chain C, Alpha-2 Macroglobulin
pdb|4ACQ|D Chain D, Alpha-2 Macroglobulin
Length = 1451
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 139/308 (45%), Gaps = 27/308 (8%)
Query: 308 LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ 367
L + A + +W + P P F P+ P + +E T+Y LL Y++ Q
Sbjct: 1147 LNEEAVKKDNSVHWERPQKPKAPVG-----HFYEPQAP----SAEVEMTSYVLLAYLTAQ 1197
Query: 368 -----ELLTDP--IVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVSI 420
E LT IVKW+ Q+ GG++STQDT +A+ AL +Y R V+I
Sbjct: 1198 PAPTSEDLTSATNIVKWITKQQNAQGGFSSTQDTVVALHALSKYGAATFTRTGKAAQVTI 1257
Query: 421 EATALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQ 480
+++ V NNN LQ++ +P+ G ++ +G G LQ S+ YN+ K +
Sbjct: 1258 QSSGTFS--SKFQVDNNNRLLLQQVSLPELPGEYSMKVTGEGCVYLQTSLKYNILPEKEE 1315
Query: 481 TQPPVP-AFALNTRANFHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQ 539
P A + T ++H ++ Y + S MA++DV + +G+I +
Sbjct: 1316 ----FPFALGVQTLPQTCDEPKAHTSFQISLSVSYTGSRSASNMAIVDVKMVSGFIPLKP 1371
Query: 540 KLDAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIRVY 599
+ R+ +V R VL Y D + + + FT+ + PV ++ + ++VY
Sbjct: 1372 TVKMLERSNHV---SRTEVSSNHVLIYLDKVSNQTLSLFFTVLQDVPVRDLKPAI-VKVY 1427
Query: 600 DYYAPERF 607
DYY + F
Sbjct: 1428 DYYETDEF 1435
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 13 LLAGQENMQSTIRSFAVSLSAEMAPSATIVVYNVGRNGDVIADSLTFPVNGISRNNVNAT 72
LL QE+M+ S ++ + +++AP A +++Y V GDVI DS + V N V+ +
Sbjct: 490 LLVKQEDMKGHF-SISIPVKSDIAPVARLLIYAVLPTGDVIGDSAKYDVENCLANKVDLS 548
Query: 73 VVFLPIVPVHLGDIDVTVTASSL 95
+P + VT S+
Sbjct: 549 FSPSQSLPASHAHLRVTAAPQSV 571
>pdb|2I07|B Chain B, Human Complement Component C3b
pdb|2XWJ|B Chain B, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|D Chain D, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|F Chain F, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|H Chain H, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 915
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 112/436 (25%), Positives = 178/436 (40%), Gaps = 64/436 (14%)
Query: 189 QVITQAVSW-VLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247
QV+ AV W +L+ Q PDG F E ++ +++ L N+ ++++LTA VLI+L
Sbjct: 350 QVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNE----KDMALTAFVLISLQE 405
Query: 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGI 307
KD+ + + +KA +LE N L+ Y VAI YAL A + +
Sbjct: 406 AKDICEEQVNSLPGSITKAGDFLEANYMNLQR---SYTVAIAGYAL----AQMGRLKGPL 458
Query: 308 LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ 367
L + + W P K N+E T+YALL + +
Sbjct: 459 LNKFLTTAKDKNRW------EDPGK----------------QLYNVEATSYALLALLQLK 496
Query: 368 EL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVSIEATALP 426
+ P+V+WLN QR GG+ STQ T M +AL +Y L VS++ LP
Sbjct: 497 DFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAPDHQELNLDVSLQ---LP 553
Query: 427 GQ-VKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQPPV 485
+ K H + A L R E + V A G G L + Y+ AK + Q
Sbjct: 554 SRSSKITHRIHWESASLLRSEETKENEGFTVTAEGKGQGTLSVVTMYH---AKAKDQLTC 610
Query: 486 PAFALNTRANFHGRNQSH-------ITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQ 538
F L + + C R+ ++ M++LD+++ TG+
Sbjct: 611 NKFDLKVTIKPAPETEKRPQDAKNTMILEICTRYRGDQDAT---MSILDISMMTGFAPDT 667
Query: 539 QKL-------DAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTE-TCINFTIERWFPVANM 590
L D YI L +A ++ Y D + +E C+ F + ++F V +
Sbjct: 668 DDLKQLANGVDRYISKY---ELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNV-EL 723
Query: 591 SRYLPIRVYDYYAPER 606
+ ++VY YY E
Sbjct: 724 IQPGAVKVYAYYNLEE 739
>pdb|2A73|B Chain B, Human Complement Component C3
Length = 991
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 112/436 (25%), Positives = 178/436 (40%), Gaps = 64/436 (14%)
Query: 189 QVITQAVSW-VLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247
QV+ AV W +L+ Q PDG F E ++ +++ L N+ ++++LTA VLI+L
Sbjct: 426 QVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNE----KDMALTAFVLISLQE 481
Query: 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGI 307
KD+ + + +KA +LE N L+ Y VAI YAL A + +
Sbjct: 482 AKDICEEQVNSLPGSITKAGDFLEANYMNLQR---SYTVAIAGYAL----AQMGRLKGPL 534
Query: 308 LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ 367
L + + W P K N+E T+YALL + +
Sbjct: 535 LNKFLTTAKDKNRW------EDPGK----------------QLYNVEATSYALLALLQLK 572
Query: 368 EL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVSIEATALP 426
+ P+V+WLN QR GG+ STQ T M +AL +Y L VS++ LP
Sbjct: 573 DFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAPDHQELNLDVSLQ---LP 629
Query: 427 GQ-VKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQPPV 485
+ K H + A L R E + V A G G L + Y+ AK + Q
Sbjct: 630 SRSSKITHRIHWESASLLRSEETKENEGFTVTAEGKGQGTLSVVTMYH---AKAKDQLTC 686
Query: 486 PAFALNTRANFHGRNQSH-------ITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQ 538
F L + + C R+ ++ M++LD+++ TG+
Sbjct: 687 NKFDLKVTIKPAPETEKRPQDAKNTMILEICTRYRGDQDAT---MSILDISMMTGFAPDT 743
Query: 539 QKL-------DAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTE-TCINFTIERWFPVANM 590
L D YI L +A ++ Y D + +E C+ F + ++F V +
Sbjct: 744 DDLKQLANGVDRYISKY---ELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNV-EL 799
Query: 591 SRYLPIRVYDYYAPER 606
+ ++VY YY E
Sbjct: 800 IQPGAVKVYAYYNLEE 815
>pdb|2HR0|B Chain B, Structure Of Complement C3b: Insights Into Complement
Activation And Regulation
pdb|2ICF|B Chain B, Crig Bound To C3b
pdb|3G6J|B Chain B, C3b In Complex With A C3b Specific Fab
pdb|3G6J|D Chain D, C3b In Complex With A C3b Specific Fab
pdb|2WII|B Chain B, Complement C3b In Complex With Factor H Domains 1-4
pdb|2WIN|B Chain B, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|D Chain D, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|F Chain F, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|H Chain H, C3 Convertase (C3bbb) Stabilized By Scin
pdb|3L5N|B Chain B, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3b
Length = 915
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 112/436 (25%), Positives = 178/436 (40%), Gaps = 64/436 (14%)
Query: 189 QVITQAVSW-VLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247
QV+ AV W +L+ Q PDG F E ++ +++ L N+ ++++LTA VLI+L
Sbjct: 350 QVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNE----KDMALTAFVLISLQE 405
Query: 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGI 307
KD+ + + +KA +LE N L+ Y VAI YAL A + +
Sbjct: 406 AKDICEEQVNSLPGSITKAGDFLEANYMNLQR---SYTVAIAGYAL----AQMGRLKGPL 458
Query: 308 LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ 367
L + + W P K N+E T+YALL + +
Sbjct: 459 LNKFLTTAKDKNRW------EDPGK----------------QLYNVEATSYALLALLQLK 496
Query: 368 EL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVSIEATALP 426
+ P+V+WLN QR GG+ STQ T M +AL +Y L VS++ LP
Sbjct: 497 DFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAPDHQELNLDVSLQ---LP 553
Query: 427 GQ-VKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQPPV 485
+ K H + A L R E + V A G G L + Y+ AK + Q
Sbjct: 554 SRSSKITHRIHWESASLLRSEETKENEGFTVTAEGKGQGTLSVVTMYH---AKAKDQLTC 610
Query: 486 PAFALNTRANFHGRNQSH-------ITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQ 538
F L + + C R+ ++ M++LD+++ TG+
Sbjct: 611 NKFDLKVTIKPAPETEKRPQDAKNTMILEICTRYRGDQDAT---MSILDISMMTGFAPDT 667
Query: 539 QKL-------DAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTE-TCINFTIERWFPVANM 590
L D YI L +A ++ Y D + +E C+ F + ++F V +
Sbjct: 668 DDLKQLANGVDRYISKY---ELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNV-EL 723
Query: 591 SRYLPIRVYDYYAPER 606
+ ++VY YY E
Sbjct: 724 IQPGAVKVYAYYNLEE 739
>pdb|2XWB|B Chain B, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|D Chain D, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 912
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 112/436 (25%), Positives = 178/436 (40%), Gaps = 64/436 (14%)
Query: 189 QVITQAVSW-VLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247
QV+ AV W +L+ Q PDG F E ++ +++ L N+ ++++LTA VLI+L
Sbjct: 347 QVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNE----KDMALTAFVLISLQE 402
Query: 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGI 307
KD+ + + +KA +LE N L+ Y VAI YAL A + +
Sbjct: 403 AKDICEEQVNSLPGSITKAGDFLEANYMNLQR---SYTVAIAGYAL----AQMGRLKGPL 455
Query: 308 LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ 367
L + + W P K N+E T+YALL + +
Sbjct: 456 LNKFLTTAKDKNRW------EDPGK----------------QLYNVEATSYALLALLQLK 493
Query: 368 EL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVSIEATALP 426
+ P+V+WLN QR GG+ STQ T M +AL +Y L VS++ LP
Sbjct: 494 DFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAPDHQELNLDVSLQ---LP 550
Query: 427 GQ-VKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQPPV 485
+ K H + A L R E + V A G G L + Y+ AK + Q
Sbjct: 551 SRSSKITHRIHWESASLLRSEETKENEGFTVTAEGKGQGTLSVVTMYH---AKAKDQLTC 607
Query: 486 PAFALNTRANFHGRNQSH-------ITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQ 538
F L + + C R+ ++ M++LD+++ TG+
Sbjct: 608 NKFDLKVTIKPAPETEKRPQDAKNTMILEICTRYRGDQDAT---MSILDISMMTGFAPDT 664
Query: 539 QKL-------DAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTE-TCINFTIERWFPVANM 590
L D YI L +A ++ Y D + +E C+ F + ++F V +
Sbjct: 665 DDLKQLANGVDRYISKY---ELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNV-EL 720
Query: 591 SRYLPIRVYDYYAPER 606
+ ++VY YY E
Sbjct: 721 IQPGAVKVYAYYNLEE 736
>pdb|2B39|A Chain A, Structure Of Mammalian C3 With An Intact Thioester At 3a
Resolution
pdb|2B39|B Chain B, Structure Of Mammalian C3 With An Intact Thioester At 3a
Resolution
Length = 1661
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 111/425 (26%), Positives = 188/425 (44%), Gaps = 55/425 (12%)
Query: 191 ITQAVSW-VLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVK 249
+ + V W +L+ Q PDG F E ++ +++ D + +++SLTA VLI L K
Sbjct: 1099 LCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFR----DTREKDVSLTAFVLIALHEAK 1154
Query: 250 DLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGILT 309
D+ + + +KA +LE + R L+ PY VAI AYAL L + LT
Sbjct: 1155 DICEAQVNSLGRSIAKAGDFLENHYRELRR---PYTVAIAAYALALLGKLEGDR----LT 1207
Query: 310 QHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL 369
+ + W +EP NQK + N+E T+YALL ++R++
Sbjct: 1208 KFLNTAKEKNRW-EEP---------NQKLY------------NVEATSYALLALLARKDY 1245
Query: 370 -LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVSIEATALPGQ 428
T P+V+WLN QR GG+ STQ T M +AL +Y L VSI+ +
Sbjct: 1246 DTTPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDVPDHKELNLDVSIQLPSRNSA 1305
Query: 429 VKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQPPVPAF 488
V++ + + A L R E + V+A G G L + Y+ AK + + F
Sbjct: 1306 VRHRILWES--ASLLRSEETKENERFTVKAEGKGQGTLSVVTVYH---AKLKGKVSCKKF 1360
Query: 489 ALNTRANFHGRN-------QSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYI--IQQQ 539
L + + C +++ ++ M++LD+++ TG+ ++
Sbjct: 1361 DLRVSIRPAPETVKKPQDAKGSMILDICTKYLGDQDAT---MSILDISMMTGFSPDVEDL 1417
Query: 540 KLDAYIRTRNVPNLQRARFQEQKVL-FYFDYLDDT-ETCINFTIERWFPVANMSRYLPIR 597
K + R + + R + L Y D + T E C++F + ++F V + + ++
Sbjct: 1418 KTLSTGVDRYISKYEMNRDSNKNTLIIYLDKVSHTVEDCLSFKVHQYFNVG-LIQPGAVK 1476
Query: 598 VYDYY 602
VY YY
Sbjct: 1477 VYSYY 1481
>pdb|3OXU|A Chain A, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|B Chain B, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|C Chain C, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3RJ3|A Chain A, Complement Components Factor H Ccp19-20 (S1191l Mutant)
And C3d In Complex
pdb|3RJ3|B Chain B, Complement Components Factor H Ccp19-20 (S1191l Mutant)
And C3d In Complex
pdb|3RJ3|C Chain C, Complement Components Factor H Ccp19-20 (S1191l Mutant)
And C3d In Complex
Length = 317
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 99/218 (45%), Gaps = 35/218 (16%)
Query: 189 QVITQAVSW-VLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247
QV+ AV W +L+ Q PDG F E ++ +++ L N+ ++++LTA VLI+L
Sbjct: 112 QVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNE----KDMALTAFVLISLQE 167
Query: 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGI 307
KD+ + + +KA +LE N L+ Y VAI YAL A + +
Sbjct: 168 AKDICEEQVNSLPGSITKAGDFLEANYMNLQR---SYTVAIAGYAL----AQMGRLKGPL 220
Query: 308 LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ 367
L + + W P K N+E T+YALL + +
Sbjct: 221 LNKFLTTAKDKNRW------EDPGK----------------QLYNVEATSYALLALLQLK 258
Query: 368 EL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEY 404
+ P+V+WLN QR GG+ STQ T M +AL +Y
Sbjct: 259 DFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQY 296
>pdb|2WY7|A Chain A, Staphylococcus Aureus Complement Subversion Protein Sbi-Iv
In Complex With Complement Fragment C3d Revealing An
Alternative Binding Mode
pdb|2WY8|A Chain A, Staphylococcus Aureus Complement Subversion Protein Sbi-Iv
In Complex With Complement Fragment C3d
pdb|3OED|A Chain A, The Structure Of The Complex Between Complement Receptor
Cr2 And Its Ligand Complement Fragment C3d
pdb|3OED|B Chain B, The Structure Of The Complex Between Complement Receptor
Cr2 And Its Ligand Complement Fragment C3d
Length = 310
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 99/218 (45%), Gaps = 35/218 (16%)
Query: 189 QVITQAVSW-VLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247
QV+ AV W +L+ Q PDG F E ++ +++ L N+ ++++LTA VLI+L
Sbjct: 105 QVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNE----KDMALTAFVLISLQE 160
Query: 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGI 307
KD+ + + +KA +LE N L+ Y VAI YAL A + +
Sbjct: 161 AKDICEEQVNSLPGSITKAGDFLEANYMNLQR---SYTVAIAGYAL----AQMGRLKGPL 213
Query: 308 LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ 367
L + + W P K N+E T+YALL + +
Sbjct: 214 LNKFLTTAKDKNRW------EDPGK----------------QLYNVEATSYALLALLQLK 251
Query: 368 EL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEY 404
+ P+V+WLN QR GG+ STQ T M +AL +Y
Sbjct: 252 DFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQY 289
>pdb|1GHQ|A Chain A, Cr2-C3d Complex Structure
Length = 308
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 99/218 (45%), Gaps = 35/218 (16%)
Query: 189 QVITQAVSW-VLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247
QV+ AV W +L+ Q PDG F E ++ +++ L N+ ++++LTA VLI+L
Sbjct: 105 QVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNE----KDMALTAFVLISLQE 160
Query: 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGI 307
KD+ + + +KA +LE N L+ Y VAI YAL A + +
Sbjct: 161 AKDICEEQVNSLPGSITKAGDFLEANYMNLQR---SYTVAIAGYAL----AQMGRLKGPL 213
Query: 308 LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ 367
L + + W P K N+E T+YALL + +
Sbjct: 214 LNKFLTTAKDKNRW------EDPGK----------------QLYNVEATSYALLALLQLK 251
Query: 368 EL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEY 404
+ P+V+WLN QR GG+ STQ T M +AL +Y
Sbjct: 252 DFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQY 289
>pdb|1C3D|A Chain A, X-ray Crystal Structure Of C3d: A C3 Fragment And Ligand
For Complement Receptor 2
pdb|2XQW|A Chain A, Structure Of Factor H Domains 19-20 In Complex With
Complement C3d
pdb|2XQW|B Chain B, Structure Of Factor H Domains 19-20 In Complex With
Complement C3d
Length = 294
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 99/218 (45%), Gaps = 35/218 (16%)
Query: 189 QVITQAVSW-VLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247
QV+ AV W +L+ Q PDG F E ++ +++ L N+ ++++LTA VLI+L
Sbjct: 105 QVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNE----KDMALTAFVLISLQE 160
Query: 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGI 307
KD+ + + +KA +LE N L+ Y VAI YAL A + +
Sbjct: 161 AKDICEEQVNSLPGSITKAGDFLEANYMNLQR---SYTVAIAGYAL----AQMGRLKGPL 213
Query: 308 LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ 367
L + + W P K N+E T+YALL + +
Sbjct: 214 LNKFLTTAKDKNRW------EDPGK----------------QLYNVEATSYALLALLQLK 251
Query: 368 EL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEY 404
+ P+V+WLN QR GG+ STQ T M +AL +Y
Sbjct: 252 DFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQY 289
>pdb|1W2S|A Chain A, Solution Structure Of Cr2 Scr 1-2 In Its Complex With C3d
By X-Ray Scattering
Length = 307
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 99/218 (45%), Gaps = 35/218 (16%)
Query: 189 QVITQAVSW-VLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247
QV+ AV W +L+ Q PDG F E ++ +++ L N+ ++++LTA VLI+L
Sbjct: 105 QVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNE----KDMALTAFVLISLQE 160
Query: 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGI 307
KD+ + + +KA +LE N L+ Y VAI YAL A + +
Sbjct: 161 AKDICEEQVNSLPGSITKAGDFLEANYMNLQR---SYTVAIAGYAL----AQMGRLKGPL 213
Query: 308 LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ 367
L + + W P K N+E T+YALL + +
Sbjct: 214 LNKFLTTAKDKNRW------EDPGK----------------QLYNVEATSYALLALLQLK 251
Query: 368 EL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEY 404
+ P+V+WLN QR GG+ STQ T M +AL +Y
Sbjct: 252 DFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQY 289
>pdb|2GOX|A Chain A, Crystal Structure Of Efb-c / C3d Complex
pdb|2GOX|C Chain C, Crystal Structure Of Efb-c / C3d Complex
pdb|2NOJ|A Chain A, Crystal Structure Of Ehp C3D COMPLEX
pdb|2NOJ|C Chain C, Crystal Structure Of Ehp C3D COMPLEX
pdb|2NOJ|E Chain E, Crystal Structure Of Ehp C3D COMPLEX
pdb|2NOJ|G Chain G, Crystal Structure Of Ehp C3D COMPLEX
pdb|3D5R|A Chain A, Crystal Structure Of Efb-C (N138a) C3D COMPLEX
pdb|3D5R|B Chain B, Crystal Structure Of Efb-C (N138a) C3D COMPLEX
pdb|3D5S|A Chain A, Crystal Structure Of Efb-C (R131a) C3D COMPLEX
pdb|3D5S|B Chain B, Crystal Structure Of Efb-C (R131a) C3D COMPLEX
Length = 297
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 99/218 (45%), Gaps = 35/218 (16%)
Query: 189 QVITQAVSW-VLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247
QV+ AV W +L+ Q PDG F E ++ +++ L N+ ++++LTA VLI+L
Sbjct: 108 QVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNE----KDMALTAFVLISLQE 163
Query: 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGI 307
KD+ + + +KA +LE N L+ Y VAI YAL A + +
Sbjct: 164 AKDICEEQVNSLPGSITKAGDFLEANYMNLQR---SYTVAIAGYAL----AQMGRLKGPL 216
Query: 308 LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ 367
L + + W P K N+E T+YALL + +
Sbjct: 217 LNKFLTTAKDKNRW------EDPGK----------------QLYNVEATSYALLALLQLK 254
Query: 368 EL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEY 404
+ P+V+WLN QR GG+ STQ T M +AL +Y
Sbjct: 255 DFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQY 292
>pdb|3PRX|B Chain B, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|D Chain D, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|B Chain B, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|D Chain D, Structure Of Complement C5 In Complex With Cvf
Length = 1642
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 110/461 (23%), Positives = 192/461 (41%), Gaps = 70/461 (15%)
Query: 189 QVITQAVSW-VLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247
++I V W +L+ Q PDG+F E ++ + + ++V LTA +L+ L
Sbjct: 1082 EIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQGAEEEV-----YLTAFILVALLE 1136
Query: 248 VKDLTGGLGARVSLAQSKAIKWL-ERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFG 306
K + + + KA +L ++ +L + + +A A +L+ + AA
Sbjct: 1137 SKTICNDYVNSLDSSIKKATNYLLKKYEKLQRPYTTALTAYALAAADQLNDDRVLMAA-- 1194
Query: 307 ILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSR 366
G +W + Y NIE T+YALL +
Sbjct: 1195 --------STGRDHWEE----------------------YNAHTHNIEGTSYALLALLKM 1224
Query: 367 QEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVSIEATAL 425
++ T PIV+WL Q + TQ T MA +AL EY + L ++IE
Sbjct: 1225 KKFDQTGPIVRWLTDQNFYGETYGQTQATVMAFQALAEYEIQMPTHKDLNLDITIELPDR 1284
Query: 426 PGQVKY-LHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQPP 484
++Y ++ +N LA+ ++ Q + V ASG G A + + YN A+ Q +
Sbjct: 1285 EVPIRYRINYENALLARTVETKLNQ---DITVTASGDGKATMTILTFYN---AQLQEKAN 1338
Query: 485 V-PAFALNTRA-NFHGR---NQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQ 539
V F LN N H + + C R++ + +S M ++D+++ TG++ +
Sbjct: 1339 VCNKFHLNVSVENIHLNAMGAKGALMLKICTRYLGEVDST---MTIIDISMLTGFLPDAE 1395
Query: 540 KL-------DAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTE-TCINFTIERWFPVANMS 591
L D YI V N Q+ V+ Y + + +E C++F I + F V +
Sbjct: 1396 DLTRLSKGVDRYISRYEVDN---NMAQKVAVIIYLNKVSHSEDECLHFKILKHFEVGFI- 1451
Query: 592 RYLPIRVYDYYA-PERFNETIFDALPTYLLNICEVCGSSQC 631
+ ++VY YY E+ + T LLN ++C + C
Sbjct: 1452 QPGSVKVYSYYNLDEKCTKFYHPDKGTGLLN--KICIGNVC 1490
>pdb|1QSJ|A Chain A, N-Terminally Truncated C3dg Fragment
pdb|1QSJ|B Chain B, N-Terminally Truncated C3dg Fragment
pdb|1QSJ|C Chain C, N-Terminally Truncated C3dg Fragment
pdb|1QSJ|D Chain D, N-Terminally Truncated C3dg Fragment
Length = 277
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 105/218 (48%), Gaps = 35/218 (16%)
Query: 189 QVITQAVSW-VLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247
QV+ AV W +L+ Q PDG F E ++ +++ + K ++SLTA VLI L
Sbjct: 89 QVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFR----NTKEADVSLTAFVLIALQE 144
Query: 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGI 307
+D+ G + + +KA ++LE + L+ PY VAI YAL L E +
Sbjct: 145 ARDICEGQVNSLPGSINKAGEYLEASYLNLQ---RPYTVAIAGYALALMNKL--EEPY-- 197
Query: 308 LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ 367
LT+ + W +EP Q+ + N+E T+YALL + +
Sbjct: 198 LTKFLNTAKDRNRW-EEP---------GQQLY------------NVEATSYALLALLLLK 235
Query: 368 ELLT-DPIVKWLNSQRLTDGGWASTQDTAMAMKALIEY 404
+ + P+V+WLN +R GG+ STQ T M +AL +Y
Sbjct: 236 DFDSVPPVVRWLNDERYYGGGYGSTQATFMVFQALAQY 273
>pdb|1QQF|A Chain A, N-Terminally Truncated C3d,G Fragment Of The Complement
System
Length = 277
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 105/218 (48%), Gaps = 35/218 (16%)
Query: 189 QVITQAVSW-VLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247
QV+ AV W +L+ Q PDG F E ++ +++ + K ++SLTA VLI L
Sbjct: 89 QVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFR----NTKEADVSLTAFVLIALQE 144
Query: 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGI 307
+D+ G + + +KA ++LE + L+ PY VAI YAL L E +
Sbjct: 145 ARDICEGQVNSLPGSINKAGEYLEASYLNLQ---RPYTVAIAGYALALMNKL--EEPY-- 197
Query: 308 LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ 367
LT+ + W +EP Q+ + N+E T+YALL + +
Sbjct: 198 LTKFLNTAKDRNRW-EEP---------GQQLY------------NVEATSYALLALLLLK 235
Query: 368 ELLT-DPIVKWLNSQRLTDGGWASTQDTAMAMKALIEY 404
+ + P+V+WLN +R GG+ STQ T M +AL +Y
Sbjct: 236 DFDSVPPVVRWLNDERYYGGGYGSTQATFMVFQALAQY 273
>pdb|4FXK|B Chain B, Human Complement C4
Length = 767
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 125/306 (40%), Gaps = 37/306 (12%)
Query: 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTV 248
+ + + +W+L Q DGSF + ++DR + L ND+ ++LTA V I L
Sbjct: 419 EKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVG-NDET----VALTAFVTIALHHG 473
Query: 249 KDLTGGLGA-----RVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEA 303
+ GA RV + SKA +L + A +L + +
Sbjct: 474 LAVFQDEGAEPLKQRVEASISKANSFLGEKASAGLLGAHAAAITAYALSLTKAPVDLLGV 533
Query: 304 AFGILTQHARSEGGLTYWGK---------EPVPAP--PSKIENQKPFLLPRLPYKYDAIN 352
A L A+ G YWG P PAP PS Q P A+
Sbjct: 534 AHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAP-----------ALW 582
Query: 353 IETTAYALLVYVSRQ--ELLTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRL 410
IETTAYALL + + + D WL Q GG+ STQDT +A+ AL Y
Sbjct: 583 IETTAYALLHLLLHEGKAEMADQASAWLTRQGSFQGGFRSTQDTVIALDALSAYWIASHT 642
Query: 411 RDVSYLTVSIEATALPG-QVKYLHVKNNNLAQLQRIEIPQAWGT-VKVQASGAGYAILQM 468
+ L V++ +T G + L + N + L+ E+ + G+ + V+ G L++
Sbjct: 643 TEERGLNVTLSSTGRNGFKSHALQLNNRQIRGLEE-ELQFSLGSKINVKVGGNSKGTLKV 701
Query: 469 SVDYNV 474
YNV
Sbjct: 702 LRTYNV 707
>pdb|4FXG|B Chain B, Complement C4 In Complex With Masp-2
pdb|4FXG|E Chain E, Complement C4 In Complex With Masp-2
Length = 767
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 125/306 (40%), Gaps = 37/306 (12%)
Query: 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTV 248
+ + + +W+L Q DGSF + ++DR + L ND+ ++LTA V I L
Sbjct: 419 EKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVG-NDET----VALTAFVTIALHHG 473
Query: 249 KDLTGGLGA-----RVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEA 303
+ GA RV + SKA +L + A +L + +
Sbjct: 474 LAVFQDEGAEPLKQRVEASISKANSFLGEKASAGLLGAHAAAITAYALSLTKAPVDLLGV 533
Query: 304 AFGILTQHARSEGGLTYWGK---------EPVPAP--PSKIENQKPFLLPRLPYKYDAIN 352
A L A+ G YWG P PAP PS Q P A+
Sbjct: 534 AHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAP-----------ALW 582
Query: 353 IETTAYALLVYVSRQ--ELLTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRL 410
IETTAYALL + + + D WL Q GG+ STQDT +A+ AL Y
Sbjct: 583 IETTAYALLHLLLHEGKAEMADQASAWLTRQGSFQGGFRSTQDTVIALDALSAYWIASHT 642
Query: 411 RDVSYLTVSIEATALPG-QVKYLHVKNNNLAQLQRIEIPQAWGT-VKVQASGAGYAILQM 468
+ L V++ +T G + L + N + L+ E+ + G+ + V+ G L++
Sbjct: 643 TEERGLNVTLSSTGRNGFKSHALQLNNRQIRGLEE-ELQFSLGSKINVKVGGNSKGTLKV 701
Query: 469 SVDYNV 474
YNV
Sbjct: 702 LRTYNV 707
>pdb|4A5W|A Chain A, Crystal Structure Of C5b6
Length = 1580
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 111/466 (23%), Positives = 202/466 (43%), Gaps = 65/466 (13%)
Query: 191 ITQAVSWVLD-HQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVK 249
I ++ W+++ +Q +GSF E + K+ +L + + ++ LTA +I +
Sbjct: 1004 ICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPV---EARENSLYLTAFTVIGIRKAF 1060
Query: 250 DLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAE--AAFGI 307
D+ + ++ A KA +L N + + +AI AYAL L T + +
Sbjct: 1061 DICPLV--KIDTALIKADNFLLENTLPAQS---TFTLAISAYALSLGDKTHPQFRSIVSA 1115
Query: 308 LTQHARSEGG---LTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYV 364
L + A +G +W K+ + S + N A +ETTAYALL +
Sbjct: 1116 LKREALVKGNPPIYRFW-KDNLQHKDSSVPNTGT-----------ARMVETTAYALLTSL 1163
Query: 365 SRQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYT---NRHRLR---DVSYLT 417
+ +++ +P++KWL+ ++ GG+ STQDT A++ L EY+ + RL DVSY
Sbjct: 1164 NLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRLSMDIDVSY-- 1221
Query: 418 VSIEATALPGQVKYLHVKNNNLAQLQR-IEIPQAWGTVKVQASGAGYAILQMSVDYNVDI 476
G + + + N L R +E+ + G+G A + ++ +
Sbjct: 1222 ------KHKGALHNYKMTDKNF--LGRPVEVLLNDDLIVSTGFGSGLATVHVT----TVV 1269
Query: 477 AKFQTQPPVPAFALNTRAN----FHGRNQSHITYH---SCQRW--IYQNESARSGMAVLD 527
K T V +F L H R + Y +C + + S+ S AV+D
Sbjct: 1270 HKTSTSEEVCSFYLKIDTQDIEASHYRGYGNSDYKRIVACASYKPSREESSSGSSHAVMD 1329
Query: 528 VAIPTGYIIQQQKLDAYIRTRNVPNL-QRARFQEQKVLFYFDYLDDTE-TCINFTIERWF 585
+++PTG ++ L A + V L + ++ V+ + + ++ C+ F I F
Sbjct: 1330 ISLPTGISANEEDLKALV--EGVDQLFTDYQIKDGHVILQLNSIPSSDFLCVRFRIFELF 1387
Query: 586 PVANMSRYLPIRVYDYYAPERFNETIFDALPTYLLNICEVCGSSQC 631
V +S VY+Y+ P++ T+F T + I +VC + C
Sbjct: 1388 EVGFLSP-ATFTVYEYHRPDK-QCTMF--YSTSNIKIQKVCEGAAC 1429
>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
Length = 1676
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 111/466 (23%), Positives = 202/466 (43%), Gaps = 65/466 (13%)
Query: 191 ITQAVSWVLD-HQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVK 249
I ++ W+++ +Q +GSF E + K+ +L + + ++ LTA +I +
Sbjct: 1100 ICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPV---EARENSLYLTAFTVIGIRKAF 1156
Query: 250 DLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAE--AAFGI 307
D+ + ++ A KA +L N + + +AI AYAL L T + +
Sbjct: 1157 DICPLV--KIDTALIKADNFLLENTLPAQS---TFTLAISAYALSLGDKTHPQFRSIVSA 1211
Query: 308 LTQHARSEGG---LTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYV 364
L + A +G +W K+ + S + N A +ETTAYALL +
Sbjct: 1212 LKREALVKGNPPIYRFW-KDNLQHKDSSVPNTGT-----------ARMVETTAYALLTSL 1259
Query: 365 SRQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYT---NRHRLR---DVSYLT 417
+ +++ +P++KWL+ ++ GG+ STQDT A++ L EY+ + RL DVSY
Sbjct: 1260 NLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRLSMDIDVSY-- 1317
Query: 418 VSIEATALPGQVKYLHVKNNNLAQLQR-IEIPQAWGTVKVQASGAGYAILQMSVDYNVDI 476
G + + + N L R +E+ + G+G A + ++ +
Sbjct: 1318 ------KHKGALHNYKMTDKNF--LGRPVEVLLNDDLIVSTGFGSGLATVHVT----TVV 1365
Query: 477 AKFQTQPPVPAFALNTRAN----FHGRNQSHITYH---SCQRW--IYQNESARSGMAVLD 527
K T V +F L H R + Y +C + + S+ S AV+D
Sbjct: 1366 HKTSTSEEVCSFYLKIDTQDIEASHYRGYGNSDYKRIVACASYKPSREESSSGSSHAVMD 1425
Query: 528 VAIPTGYIIQQQKLDAYIRTRNVPNL-QRARFQEQKVLFYFDYLDDTE-TCINFTIERWF 585
+++PTG ++ L A + V L + ++ V+ + + ++ C+ F I F
Sbjct: 1426 ISLPTGISANEEDLKALV--EGVDQLFTDYQIKDGHVILQLNSIPSSDFLCVRFRIFELF 1483
Query: 586 PVANMSRYLPIRVYDYYAPERFNETIFDALPTYLLNICEVCGSSQC 631
V +S VY+Y+ P++ T+F T + I +VC + C
Sbjct: 1484 EVGFLSP-ATFTVYEYHRPDK-QCTMF--YSTSNIKIQKVCEGAAC 1525
>pdb|3CU7|A Chain A, Human Complement Component 5
pdb|3CU7|B Chain B, Human Complement Component 5
pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
Length = 1676
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 111/466 (23%), Positives = 202/466 (43%), Gaps = 65/466 (13%)
Query: 191 ITQAVSWVLD-HQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVK 249
I ++ W+++ +Q +GSF E + K+ +L + + ++ LTA +I +
Sbjct: 1100 ICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPV---EARENSLYLTAFTVIGIRKAF 1156
Query: 250 DLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAE--AAFGI 307
D+ + ++ A KA +L N + + +AI AYAL L T + +
Sbjct: 1157 DICPLV--KIDTALIKADNFLLENTLPAQS---TFTLAISAYALSLGDKTHPQFRSIVSA 1211
Query: 308 LTQHARSEGG---LTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYV 364
L + A +G +W K+ + S + N A +ETTAYALL +
Sbjct: 1212 LKREALVKGNPPIYRFW-KDNLQHKDSSVPNTGT-----------ARMVETTAYALLTSL 1259
Query: 365 SRQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYT---NRHRLR---DVSYLT 417
+ +++ +P++KWL+ ++ GG+ STQDT A++ L EY+ + RL DVSY
Sbjct: 1260 NLKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLRLSMDIDVSY-- 1317
Query: 418 VSIEATALPGQVKYLHVKNNNLAQLQR-IEIPQAWGTVKVQASGAGYAILQMSVDYNVDI 476
G + + + N L R +E+ + G+G A + ++ +
Sbjct: 1318 ------KHKGALHNYKMTDKNF--LGRPVEVLLNDDLIVSTGFGSGLATVHVT----TVV 1365
Query: 477 AKFQTQPPVPAFALNTRAN----FHGRNQSHITYH---SCQRW--IYQNESARSGMAVLD 527
K T V +F L H R + Y +C + + S+ S AV+D
Sbjct: 1366 HKTSTSEEVCSFYLKIDTQDIEASHYRGYGNSDYKRIVACASYKPSREESSSGSSHAVMD 1425
Query: 528 VAIPTGYIIQQQKLDAYIRTRNVPNL-QRARFQEQKVLFYFDYLDDTE-TCINFTIERWF 585
+++PTG ++ L A + V L + ++ V+ + + ++ C+ F I F
Sbjct: 1426 ISLPTGISANEEDLKALV--EGVDQLFTDYQIKDGHVILQLNSIPSSDFLCVRFRIFELF 1483
Query: 586 PVANMSRYLPIRVYDYYAPERFNETIFDALPTYLLNICEVCGSSQC 631
V +S VY+Y+ P++ T+F T + I +VC + C
Sbjct: 1484 EVGFLSP-ATFTVYEYHRPDK-QCTMF--YSTSNIKIQKVCEGAAC 1525
>pdb|1HZF|A Chain A, C4adg Fragment Of Human Complement Factor C4a
Length = 367
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 93/234 (39%), Gaps = 34/234 (14%)
Query: 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTV 248
+ + + +W+L Q DGSF + ++DR L ND+ ++LTA V I L
Sbjct: 142 EKLQETSNWLLSQQQADGSFQDPCPVLDRSXQGGLV-GNDET----VALTAFVTIALHHG 196
Query: 249 KDLTGGLGA-----RVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEA 303
+ GA RV + SKA +L + A L + A +
Sbjct: 197 LAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPADLRGV 256
Query: 304 AFGILTQHARSEGGLTYWGK---------EPVPAP--PSKIENQKPFLLPRLPYKYDAIN 352
A L A+ G YWG P PAP PS Q P A+
Sbjct: 257 AHNNLXAXAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPXPQAP-----------ALW 305
Query: 353 IETTAYALLVYVSRQ--ELLTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEY 404
IETTAYALL + + D WL Q GG+ STQDT +A+ AL Y
Sbjct: 306 IETTAYALLHLLLHEGKAEXADQASAWLTRQGSFQGGFRSTQDTVIALDALSAY 359
>pdb|1EDY|A Chain A, Crystal Structure Of Rat Alpha 1-Macroglobulin Receptor
Binding Domain
pdb|1EDY|B Chain B, Crystal Structure Of Rat Alpha 1-Macroglobulin Receptor
Binding Domain
Length = 134
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 493 RANFHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTRNVPN 552
+A H + Q HI Y E S M ++DV + +G+I + + + ++ N
Sbjct: 17 KAEHHRKFQIHINVS------YIGERPNSNMVIVDVKMVSGFIPVKPSVK---KLQDQSN 67
Query: 553 LQRARFQEQKVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIRVYDYYAPERF 607
+QR VL Y + L + +F +E+ PV N+ + P++VYDYY + F
Sbjct: 68 IQRTEVNTNHVLIYIEKLTNQTMGFSFAVEQDIPVKNL-KPAPVKVYDYYETDEF 121
>pdb|1AYO|A Chain A, Receptor Binding Domain Of Bovine Alpha-2-Macroglobulin
pdb|1AYO|B Chain B, Receptor Binding Domain Of Bovine Alpha-2-Macroglobulin
Length = 130
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 501 QSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTRNVPNLQRARFQE 560
++H ++ Y S MA++DV + +G+I L ++ N+ R
Sbjct: 19 KAHTSFQISLSVSYIGSRPASNMAIVDVKMVSGFI----PLKPTVKMLERSNVSRTEVSN 74
Query: 561 QKVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIRVYDYYAPERF 607
VL Y D + + + FT+ + PV ++ + ++VYDYY + F
Sbjct: 75 NHVLIYLDKVTNETLTLTFTVLQDIPVRDLKPAI-VKVYDYYETDEF 120
>pdb|1BV8|A Chain A, Receptor Domain From Alpha-2-Macroglobulin
Length = 138
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 501 QSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTRNVPNLQRARFQE 560
++H ++ Y + S MA++DV + +G+I + + R+ +V R
Sbjct: 20 KAHTSFQISLSVSYTGSRSASNMAIVDVKMVSGFIPLKPTVKMLERSNHV---SRTEVSS 76
Query: 561 QKVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIRVYDYYAPERF 607
VL Y D + + + FT+ + PV ++ + ++VYDYY + F
Sbjct: 77 NHVLIYLDKVSNQTLSLFFTVLQDVPVRDLKPAI-VKVYDYYETDEF 122
>pdb|4FXG|C Chain C, Complement C4 In Complex With Masp-2
pdb|4FXG|F Chain F, Complement C4 In Complex With Masp-2
pdb|4FXK|C Chain C, Human Complement C4
Length = 291
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 18/143 (12%)
Query: 500 NQSHITYHSCQRWIYQN-ESARSGMAVLDVAIPTGYIIQQQKLDAY--IRTRNVPNLQRA 556
+S + Y C I++N + SGMA+ DV + +G+ + L+ + R V + +
Sbjct: 9 QESRVHYTVC---IWRNGKVGLSGMAIADVTLLSGFHALRADLEKLTSLSDRYVSHFET- 64
Query: 557 RFQEQKVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIRVYDYYAPERFNETIFDALP 616
+ VL YFD + + C+ F + PV + + +YDYY PER ++F P
Sbjct: 65 --EGPHVLLYFDSVPTSRECVGFEAVQEVPVG-LVQPASATLYDYYNPER-RCSVFYGAP 120
Query: 617 T---YLLNICEV----CGSSQCP 632
+ L +C C +CP
Sbjct: 121 SKSRLLATLCSAEVCQCAEGKCP 143
>pdb|1T7L|A Chain A, Crystal Structure Of Cobalamin-Independent Methionine
Synthase From T. Maritima
pdb|1T7L|B Chain B, Crystal Structure Of Cobalamin-Independent Methionine
Synthase From T. Maritima
pdb|3BQ5|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And Homocysteine
(Monoclinic)
pdb|3BQ5|B Chain B, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ And Homocysteine
(Monoclinic)
pdb|3BQ6|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ (Monoclinic)
pdb|3BQ6|B Chain B, Crystal Structure Of T. Maritima Cobalamin-Independent
Methionine Synthase Complexed With Zn2+ (Monoclinic)
Length = 766
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 213 WLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLER 272
W VD + +SL N H+ +TL+ +L GGL +++ A+ K
Sbjct: 318 WKVDLRKVASLVEKLGASAISNSCPLFHLPVTLELENNLPGGLKEKLAFAKEKL-----E 372
Query: 273 NLRLLKDF--GDPYEVAIVAY 291
L++LKDF G +++ V++
Sbjct: 373 ELKMLKDFLEGKTFDLPNVSF 393
>pdb|1XR2|A Chain A, Crystal Structure Of Oxidized T. Maritima Cobalamin-
Independent Methionine Synthase Complexed With
Methyltetrahydrofolate
pdb|1XR2|B Chain B, Crystal Structure Of Oxidized T. Maritima Cobalamin-
Independent Methionine Synthase Complexed With
Methyltetrahydrofolate
Length = 766
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 213 WLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLER 272
W VD + +SL N H+ +TL+ +L GGL +++ A+ K
Sbjct: 318 WKVDLRKVASLVEKLGASAISNSCPLFHLPVTLELENNLPGGLKEKLAFAKEKL-----E 372
Query: 273 NLRLLKDF--GDPYEVAIVAY 291
L++LKDF G +++ V++
Sbjct: 373 ELKMLKDFLEGKTFDLPNVSF 393
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,248,306
Number of Sequences: 62578
Number of extensions: 810414
Number of successful extensions: 1942
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1849
Number of HSP's gapped (non-prelim): 64
length of query: 713
length of database: 14,973,337
effective HSP length: 106
effective length of query: 607
effective length of database: 8,340,069
effective search space: 5062421883
effective search space used: 5062421883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)