Query psy742
Match_columns 713
No_of_seqs 257 out of 848
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 17:48:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1366|consensus 100.0 2.1E-79 4.5E-84 742.3 49.3 568 16-636 775-1434(1436)
2 PF07678 A2M_comp: A-macroglob 100.0 1.9E-49 4.1E-54 411.9 17.5 217 167-406 24-246 (246)
3 cd02896 complement_C3_C4_C5 Pr 100.0 2.7E-45 5.8E-50 391.1 19.8 213 169-404 80-297 (297)
4 cd02897 A2M_2 Proteins similar 100.0 6.6E-38 1.4E-42 333.6 19.3 207 169-404 79-292 (292)
5 cd02891 A2M_like Proteins simi 99.9 3.9E-27 8.4E-32 248.8 18.8 198 170-404 79-282 (282)
6 PF07677 A2M_recep: A-macroglo 99.9 1E-24 2.2E-29 191.9 9.6 90 521-612 1-91 (91)
7 COG2373 Large extracellular al 99.7 1.3E-15 2.8E-20 189.7 31.8 521 14-610 1024-1611(1621)
8 cd02889 SQCY Squalene cyclase 99.7 2.3E-16 5E-21 171.8 17.1 209 172-401 93-329 (348)
9 cd00688 ISOPREN_C2_like This g 99.6 2.9E-14 6.3E-19 149.1 18.1 200 169-404 81-300 (300)
10 cd02892 SQCY_1 Squalene cyclas 99.5 2.6E-13 5.7E-18 159.2 17.2 207 172-399 376-613 (634)
11 cd00688 ISOPREN_C2_like This g 99.0 7.9E-09 1.7E-13 108.0 16.8 184 159-390 4-227 (300)
12 TIGR01507 hopene_cyclase squal 98.9 3.8E-08 8.2E-13 115.3 18.5 216 170-407 380-632 (635)
13 TIGR03463 osq_cycl 2,3-oxidosq 98.9 4.1E-08 8.9E-13 115.1 18.0 197 174-390 376-604 (634)
14 TIGR01787 squalene_cyclas squa 98.8 8E-08 1.7E-12 112.5 17.2 201 185-405 384-620 (621)
15 cd02897 A2M_2 Proteins similar 98.8 1.1E-07 2.4E-12 101.5 15.8 134 158-311 3-172 (292)
16 cd02889 SQCY Squalene cyclase 98.7 3.9E-07 8.3E-12 99.4 17.6 192 170-404 25-291 (348)
17 PLN03012 Camelliol C synthase 98.7 5.6E-07 1.2E-11 105.9 17.9 210 185-408 509-756 (759)
18 cd02896 complement_C3_C4_C5 Pr 98.5 1.2E-06 2.5E-11 94.1 14.9 191 158-404 3-258 (297)
19 PLN02993 lupeol synthase 98.5 2.7E-06 5.8E-11 100.5 18.1 211 185-409 509-757 (763)
20 cd02891 A2M_like Proteins simi 98.4 3.6E-06 7.8E-11 89.0 14.7 133 158-311 3-170 (282)
21 PF13249 Prenyltrans_2: Prenyl 98.2 4.3E-06 9.2E-11 75.8 8.2 40 350-389 69-112 (113)
22 cd02892 SQCY_1 Squalene cyclas 98.0 0.0001 2.3E-09 87.1 16.5 166 185-390 232-421 (634)
23 TIGR03463 osq_cycl 2,3-oxidosq 98.0 0.00019 4.1E-09 84.6 17.4 200 170-403 306-576 (634)
24 TIGR01507 hopene_cyclase squal 97.9 0.00042 9E-09 81.7 19.0 196 170-404 316-571 (635)
25 cd02890 PTase Protein prenyltr 97.8 0.0007 1.5E-08 72.1 16.2 189 170-406 27-236 (286)
26 TIGR01787 squalene_cyclas squa 97.6 0.0023 5E-08 75.5 18.0 197 170-403 296-560 (621)
27 cd02890 PTase Protein prenyltr 97.4 0.0029 6.4E-08 67.3 15.4 183 170-402 77-284 (286)
28 PF07678 A2M_comp: A-macroglob 97.3 0.0015 3.2E-08 68.3 11.0 62 193-274 1-62 (246)
29 cd02893 FTase Protein farnesyl 97.2 0.009 1.9E-07 64.3 16.3 190 170-406 27-236 (299)
30 cd02894 GGTase-II Geranylgeran 97.2 0.0087 1.9E-07 63.9 15.5 173 178-402 89-285 (287)
31 COG1689 Uncharacterized protei 97.2 0.0063 1.4E-07 60.9 12.7 53 351-403 209-270 (274)
32 cd02894 GGTase-II Geranylgeran 97.1 0.017 3.8E-07 61.6 16.6 168 190-407 50-238 (287)
33 PLN03012 Camelliol C synthase 96.9 0.0024 5.2E-08 75.9 8.0 89 174-273 621-713 (759)
34 PLN03201 RAB geranylgeranyl tr 96.7 0.046 9.9E-07 59.3 15.6 168 188-407 55-242 (316)
35 PLN02993 lupeol synthase 96.7 0.0044 9.5E-08 73.8 8.1 76 187-273 637-713 (763)
36 PF13243 Prenyltrans_1: Prenyl 96.5 0.003 6.6E-08 56.8 4.5 60 191-275 1-60 (109)
37 PF13249 Prenyltrans_2: Prenyl 96.2 0.0088 1.9E-07 53.9 5.6 55 350-404 20-85 (113)
38 cd02895 GGTase-I Geranylgerany 96.0 0.2 4.3E-06 54.2 16.0 196 170-407 27-258 (307)
39 PLN02710 farnesyltranstransfer 95.9 0.23 5E-06 55.9 15.9 193 170-407 72-281 (439)
40 cd02893 FTase Protein farnesyl 95.8 0.063 1.4E-06 57.8 10.6 167 191-402 100-297 (299)
41 PLN03201 RAB geranylgeranyl tr 95.7 0.13 2.7E-06 55.9 12.6 163 190-403 9-193 (316)
42 PF13243 Prenyltrans_1: Prenyl 95.6 0.014 2.9E-07 52.6 4.3 61 188-273 45-105 (109)
43 PF01122 Cobalamin_bind: Eukar 94.9 0.34 7.5E-06 52.3 12.7 92 283-403 145-249 (326)
44 cd02895 GGTase-I Geranylgerany 94.7 0.24 5.2E-06 53.5 11.0 168 191-402 114-305 (307)
45 KOG0497|consensus 94.1 0.89 1.9E-05 53.1 14.4 212 185-409 508-756 (760)
46 KOG0365|consensus 91.0 4.1 8.8E-05 44.1 13.1 147 170-403 100-260 (423)
47 PF00432 Prenyltrans: Prenyltr 90.7 0.35 7.7E-06 36.4 3.8 20 191-210 3-22 (44)
48 COG5029 CAL1 Prenyltransferase 89.1 2.9 6.2E-05 44.7 10.2 169 193-403 130-313 (342)
49 KOG0366|consensus 84.6 16 0.00034 38.3 12.3 168 191-404 116-301 (329)
50 PF00432 Prenyltrans: Prenyltr 84.5 1.5 3.3E-05 32.9 3.9 32 371-402 3-41 (44)
51 KOG0497|consensus 83.5 2.4 5.2E-05 49.7 6.6 97 164-273 601-712 (760)
52 KOG1366|consensus 77.5 3 6.6E-05 53.6 5.3 67 189-274 971-1037(1436)
53 PLN02710 farnesyltranstransfer 75.7 33 0.00072 39.0 12.4 144 232-406 69-232 (439)
54 TIGR02474 pec_lyase pectate ly 72.4 6.6 0.00014 42.0 5.5 25 188-212 66-90 (290)
55 KOG0367|consensus 72.2 11 0.00024 40.1 6.9 87 189-299 228-322 (347)
56 COG1657 SqhC Squalene cyclase 69.9 13 0.00029 42.7 7.6 184 188-390 280-480 (517)
57 TIGR01451 B_ant_repeat conserv 63.9 13 0.00028 29.2 4.3 39 500-541 10-48 (53)
58 PLN02592 ent-copalyl diphospha 60.3 11 0.00024 45.9 4.9 64 191-277 117-180 (800)
59 COG5029 CAL1 Prenyltransferase 55.1 18 0.00039 38.9 4.8 47 357-403 161-215 (342)
60 PF10633 NPCBM_assoc: NPCBM-as 49.8 1.1E+02 0.0024 25.6 8.1 65 15-93 2-76 (78)
61 PF10569 Thiol-ester_cl: Alpha 49.3 7.6 0.00016 27.2 0.7 11 159-169 1-11 (31)
62 KOG0367|consensus 47.8 1E+02 0.0022 33.2 8.8 102 283-404 158-267 (347)
63 PF01122 Cobalamin_bind: Eukar 45.3 95 0.0021 33.9 8.5 76 189-293 215-290 (326)
64 COG2373 Large extracellular al 40.5 28 0.00061 45.8 4.2 100 170-300 1229-1333(1621)
65 PF09492 Pec_lyase: Pectic aci 39.4 50 0.0011 35.4 5.3 23 189-211 62-84 (289)
66 PF07718 Coatamer_beta_C: Coat 36.5 2.1E+02 0.0045 27.4 8.3 52 5-63 42-113 (140)
67 PF01345 DUF11: Domain of unkn 35.6 65 0.0014 26.8 4.4 37 499-538 38-74 (76)
68 PF06030 DUF916: Bacterial pro 33.0 4E+02 0.0087 24.7 10.1 21 9-29 18-38 (121)
69 PF07705 CARDB: CARDB; InterP 26.8 3.9E+02 0.0085 22.6 9.7 22 71-92 62-83 (101)
70 PF05753 TRAP_beta: Translocon 23.5 3.5E+02 0.0077 26.9 7.9 67 14-91 34-108 (181)
71 PLN02279 ent-kaur-16-ene synth 23.1 79 0.0017 38.7 3.8 66 193-282 77-142 (784)
72 KOG0366|consensus 23.0 1.2E+02 0.0027 32.0 4.6 38 370-407 67-111 (329)
73 COG1470 Predicted membrane pro 22.8 5.5E+02 0.012 29.5 9.9 25 71-95 443-470 (513)
74 TIGR01577 oligosac_amyl oligos 22.8 2.4E+02 0.0052 33.6 7.8 124 187-324 312-461 (616)
75 TIGR03503 conserved hypothetic 22.6 5.5E+02 0.012 28.7 9.8 98 11-119 112-219 (374)
76 KOG0365|consensus 21.9 1.5E+02 0.0033 32.5 5.2 37 174-210 202-240 (423)
No 1
>KOG1366|consensus
Probab=100.00 E-value=2.1e-79 Score=742.28 Aligned_cols=568 Identities=30% Similarity=0.446 Sum_probs=462.3
Q ss_pred cceeEeeeeeEEEE-----EEEEEEeeCCCEEEEeccCCCccce---eeEE--eeCCcccccccccEEEEEEEEecceee
Q psy742 16 GQENMQSTIRSFAV-----SLSAEMAPSATIVVYNVGRNGDVIA---DSLT--FPVNGISRNNVNATVVFLPIVPVHLGD 85 (713)
Q Consensus 16 ~~~~~~~~~~~f~~-----~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~V~F~I~p~~lG~ 85 (713)
-||.+++++++|-. .|+|+|.+++++|+......++... .++. +-.+.. +++.|+|+|+|..+|.
T Consensus 775 RgE~i~l~~tv~NYl~k~~~v~V~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----s~~~~~~~v~p~~~g~ 849 (1436)
T KOG1366|consen 775 RGEQIALRVTVFNYLTKELDVSVILLSSEDFCYDATSKANEQVGVSQRSVQVSRVTPAQ-----SGKLVYFPVRPGVIGL 849 (1436)
T ss_pred eCcEeEEeEEEecccCcceEEEEEEccCCCeeeecccccCcccccccceEEEEEEcccc-----cceEEEEEeccccccc
Confidence 48999999999954 9999999999999997433333322 1111 111111 3899999999999999
Q ss_pred EEEEEEEEecCCCceEEEEEEEecCCeEEEEeEeeeeecccccceeeeeeeccCCCCccCCCCc-eEEEEecC-----CC
Q psy742 86 IDVTVTASSLIGRDTVTRKLHIIADGLPQHRHQSILLDLSNRAYVFQYLHVNVTETPIIPYDVD-RYYVYGSS-----IN 159 (713)
Q Consensus 86 i~I~V~A~s~~~sD~V~~~L~V~peGv~~~~~~s~~ld~~~~~~~~~~~~~~~p~~~~ip~s~~-~~~v~Gs~-----~~ 159 (713)
++++++|.+..+.|+|+|+|+|+|||++++++++.+||++. ...+.+.+.+|.+ .+|+++. ++.+.|+. +|
T Consensus 850 ~~~~~~~~t~~~~dav~k~l~V~~eG~~~~~~~~~~i~l~~--~~~~~~~~~~p~~-~V~~S~~~~~~~vgD~lGps~~~ 926 (1436)
T KOG1366|consen 850 ILVTISALTLLGGDAVHKTLLVEPEGITQERNFSVLIDLSV--SASKELSLGVPND-VVPGSERARISVVGDVLGPSMNN 926 (1436)
T ss_pred cceEEEEeecCCCccEEEEEEEeccCccceeeeeEEeccCC--CcCcceeecCCCC-cCccccceeeEEEecccccChhh
Confidence 99999999999999999999999999999999999999983 3456667777775 7899854 77888776 88
Q ss_pred ccccccccch-----------------------------------------------------------------hhhhh
Q psy742 160 SSSISTLKML-----------------------------------------------------------------LWYSC 174 (713)
Q Consensus 160 l~sLi~~P~g-----------------------------------------------------------------tWL~T 174 (713)
+++|++|||| ||| |
T Consensus 927 l~~Ll~lP~GcGEQnMi~faPni~v~~YL~~t~q~~~~~k~ka~~~l~~GyqrqL~yk~~DgSySaFg~~~~~~stWL-t 1005 (1436)
T KOG1366|consen 927 LSNLLRLPYGCGEQNMINFAPNIYVLKYLPKTNQLTPELKRKALKFLEQGYQRQLTYKRADGSYSAFGSSDRSGSTWL-T 1005 (1436)
T ss_pred hHHhccCCCCcccceeecccchhhHHHHHhhhhccChhHHHHHHHHHHHHHHHHHhhhccCCChhhhcCCCCcccHHH-H
Confidence 9999999998 999 9
Q ss_pred hHH---hhhhhcc-CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhccc
Q psy742 175 LLC---LYIWETL-MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKD 250 (713)
Q Consensus 175 AfV---F~qa~~~-~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~ 250 (713)
||| |.+|++| +||+++|++++.||.++|++||+|.+.|+++|++|||++++ .+.|||+++..+.+..
T Consensus 1006 afvlr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~GsF~e~~~v~~~~~qg~l~~--------~~~l~~~~l~~~~~~~- 1076 (1436)
T KOG1366|consen 1006 AFVLRVFSQAKEYIFIDPNVITQALNWLSQQQKENGSFKEVGEVLHNEMQGGLQD--------IVALTAIVLSVILDVD- 1076 (1436)
T ss_pred HHHHHHhhhccCceEecHHHHHHHHHHHHHhhccCceEeccccccchhhhcCCCC--------cceeeeEeeeeeccch-
Confidence 999 9999999 99999999999999999999999999999999999987653 2789999999885432
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHhcCCccHHHHHHHHHHhhhccCCceeecCCC-CCCC
Q psy742 251 LTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGILTQHARSEGGLTYWGKEP-VPAP 329 (713)
Q Consensus 251 l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~~~~YtlAl~aYALaLa~~~~~~~al~~L~~~a~~~~~~~~W~~~~-~~~~ 329 (713)
.....+|..|++++++... .++|+.|+++|||.++++|.+..++..|+..++.+++..||.... .+.+
T Consensus 1077 ---------~~~~~~a~~~~~~~~~~~~--~~~~~~a~~ayAl~l~~sp~a~~~~~~l~~~a~~~~d~~~~~~~~~~~~~ 1145 (1436)
T KOG1366|consen 1077 ---------NASIQKAVAYLEESLDSGS--MDVYTVAITAYALQLAKSPQAAKALAKLKSLARVEGDRRYWWASALKAKN 1145 (1436)
T ss_pred ---------hhHHHHHHHHHhhccCccc--cccchHHHHHHHHHhccCchHHHHHHhhhhhhcccCCceeeeeccccccC
Confidence 2467999999999998752 399999999999999999999888888999999888766554432 2111
Q ss_pred CCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-chhHHHHHHHhcccCCCCccchhhHHHHHHHHHHHHHhc
Q psy742 330 PSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRH 408 (713)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-~a~~Iv~WL~~Qrn~~GGF~STQDTvvALqALa~Ya~~~ 408 (713)
+. . | +...++.+||+||||||+++.+++. .+.||+|||++|||..|||+|||||++|||||++|+...
T Consensus 1146 ~~-----~--~----~~q~~s~~VE~tsYaLL~~~~~~~~~~~~pivrWl~~qr~~~GGf~STQdTvvalqaLs~y~~~~ 1214 (1436)
T KOG1366|consen 1146 AV-----K--Y----SPQARSIDVETTAYALLAYLLLAQVDYALPIVRWLVEQRNALGGFSSTQDTVVALQALSEYAALS 1214 (1436)
T ss_pred cc-----c--C----CCccchhhccchHHHHHHHHHhcccCcCchhHhhhhhhhcccCceeehHHHHHHHHHHHHhhhhc
Confidence 11 0 1 1123689999999999999999988 999999999999999999999999999999999999988
Q ss_pred ccCCcceeEEEEEEecCCCceeEEEEeccCcceeEeEEecCCCceEEEEEEeeeEEEEEEEEEEeeccccccCCCCCCCe
Q psy742 409 RLRDVSYLTVSIEATALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQPPVPAF 488 (713)
Q Consensus 409 ~~~~~~~l~v~V~~~~~~~~~~~~~I~~~N~~~~q~~~lp~~~g~v~v~a~G~G~a~~q~~~~Yn~~~~~~~~~~~~~~F 488 (713)
+... ..++|++...+......++.+...|.+++|+.++|..++.+.++++|.||+++|+.++||+..++ +++.|
T Consensus 1215 ~~~~-~~~~V~i~~~~~~~~~~~~~~~~~N~lllQ~~~~p~~~~~v~~ta~G~g~~~~q~~~~Ynv~~~~-----~~~~f 1288 (1436)
T KOG1366|consen 1215 HTET-LSLQVTIQVPGKSSGTSQVDSTPNNLLLLQSVSLPSLHKTVCFTAKGQGCATVQISYTYNLLTPK-----SDPRF 1288 (1436)
T ss_pred ccce-eEEEEEEEecccCCCceeeeccccchhhcceeecccCCCceEEEEecceeEEEEeeEEEeecCcc-----cCCCc
Confidence 7533 34567776644333334455558899999999999999999999999999999999999998753 56789
Q ss_pred eEEEEeec--cCCCCceeEEEEEEEeeccCCCCccceEEEEEecCcceeecccchHHHhccCCCCcceeE--EEeCCEEE
Q psy742 489 ALNTRANF--HGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTRNVPNLQRA--RFQEQKVL 564 (713)
Q Consensus 489 ~L~v~~~~--~~~~~~~~~l~vC~~~~~~~~~~~s~MaiveV~lpSGf~~~~~~L~~l~~~~~~~~i~~~--E~~d~~V~ 564 (713)
.|.+.... ...+..+..+..|..+...+.++.|||||+||+|||||.++.++|..+.... .+.+. +..+.+|+
T Consensus 1289 ~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~SnMAIldVklpSGf~~~~~sl~~le~~~---~v~~~~~~~~~~~v~ 1365 (1436)
T KOG1366|consen 1289 FLIVSTKPEPVEFDLSNIVVVYTTCCERTGSSGRSNMAILDVKLPSGFRADHESLGLLEQLE---DVYRVEVENDHRRVL 1365 (1436)
T ss_pred eeeeeeccccccCccccceEEEEEEEeecCCCCCCCceeeeeecccCcccChhhHHHhhccc---eEEEEEEecCCcceE
Confidence 99887632 2233344433333333344556899999999999999999999999986532 34444 44555699
Q ss_pred EEEecCC-CceeEEEEEEEEEeeeeccccceeEEEEeccCCCceeEEEeecCcccccccccccCCCCCCCCCC
Q psy742 565 FYFDYLD-DTETCINFTIERWFPVANMSRYLPIRVYDYYAPERFNETIFDALPTYLLNICEVCGSSQCPYCPI 636 (713)
Q Consensus 565 lYfd~l~-~~~~cv~f~~~~~~~V~~~~~pa~v~VYDYY~P~~~~~~~y~~~~~~~~~~C~~C~~~~C~~c~~ 636 (713)
+|||+++ ++..|+.|++.++++|+++ +||+++|||||+||++|+.+|+....+ +|++|.+.+|+.|..
T Consensus 1366 ~Y~D~v~~~~~~cv~F~a~~~~~V~~~-kpa~v~VYDYY~pee~~t~~Y~~~~~~---~~~~c~~~~c~~~c~ 1434 (1436)
T KOG1366|consen 1366 IYFDSVSGNETFCVRFEAVQSFPVANL-KPASVTVYDYYEPEEQATRFYNAESSS---SCDVCEGAQCKCPCE 1434 (1436)
T ss_pred EEeeccCCCCceEEEEEEEEEeehhcc-CCceEEEeeccCchhhhhhhhcccccc---hhhhcccccCCcCCC
Confidence 9999999 6999999999999999999 699999999999999988888764322 888888889986654
No 2
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=100.00 E-value=1.9e-49 Score=411.85 Aligned_cols=217 Identities=37% Similarity=0.611 Sum_probs=185.5
Q ss_pred cchhhhhhhHH---hhhhhcc-CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHH
Q psy742 167 KMLLWYSCLLC---LYIWETL-MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVL 242 (713)
Q Consensus 167 P~gtWL~TAfV---F~qa~~~-~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVl 242 (713)
|.++|| |||| |.+|+++ +||+++|+++++||+++|++||||.|.++++|++|+|++ .+++.|||||+
T Consensus 24 ~~s~WL-TAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~~~~~~g~~--------~~~~~lTA~Vl 94 (246)
T PF07678_consen 24 PSSTWL-TAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVIHREMQGGV--------EDDIALTAYVL 94 (246)
T ss_dssp SBBHHH-HHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-SSGGGSGGG--------THHHHHHHHHH
T ss_pred cccHHH-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCccccccCCCC--------CCCeeehHHHH
Confidence 555999 9999 9999999 999999999999999999999999999999999997653 46799999999
Q ss_pred HHHHhcccccCCCCCchhHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHhcC-CccHHHHHHHHHHhhhccCCceee
Q psy742 243 ITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSK-ATIAEAAFGILTQHARSEGGLTYW 321 (713)
Q Consensus 243 iaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~~~~YtlAl~aYALaLa~-~~~~~~al~~L~~~a~~~~~~~~W 321 (713)
+||+|+++++.........+++||++||+++.+.+. ++|++||++|||++++ ++.+..++++|++.+..+++..||
T Consensus 95 iAL~e~~~~~~~~~~~~~~~i~kA~~~L~~~~~~~~---~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~~~~~~~~W 171 (246)
T PF07678_consen 95 IALLEAGSLCDSEKPEYENAINKALNYLERHLDNIQ---DPYTLALVAYALALAGDSPQASKLLNKLNSMATTEGGLRYW 171 (246)
T ss_dssp HHHHHCHCCHTTTHHCHHHHHHHHHHHHHHHHGCTS---SHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCEETTTTCEE
T ss_pred HHHHhhhhhccccchhhHHHHHHHHHHHHHhccccC---CHHHHHHHHHHHHhhcccchHHHHHHHHHHhhhhccccCcc
Confidence 999999977655555567899999999999988777 9999999999999995 667889999999999999989999
Q ss_pred cCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-chhHHHHHHHhcccCCCCccchhhHHHHHHH
Q psy742 322 GKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKA 400 (713)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-~a~~Iv~WL~~Qrn~~GGF~STQDTvvALqA 400 (713)
.....+.+.. .+++ ++.+.+|||||||||+++..++. .+.||++||++|||++|||+|||||+|||||
T Consensus 172 ~~~~~~~~~~-----~~~~------~~~s~~vEtTaYaLLa~l~~~~~~~~~~iv~WL~~qr~~~Ggf~STQdTvvaL~A 240 (246)
T PF07678_consen 172 SSDESSSSSS-----SPWS------RGSSLDVETTAYALLALLKRGDLEEASPIVRWLISQRNSGGGFGSTQDTVVALQA 240 (246)
T ss_dssp -SSSSSSSSS-----STTT-------SHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHCTTTTSSTSSHHHHHHHHHH
T ss_pred cCCccccccc-----cccc------ccchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCCCccCcHHHHHHHHHH
Confidence 8765321111 1111 14689999999999999999888 9999999999999999999999999999999
Q ss_pred HHHHHH
Q psy742 401 LIEYTN 406 (713)
Q Consensus 401 La~Ya~ 406 (713)
|++|+.
T Consensus 241 L~~Ya~ 246 (246)
T PF07678_consen 241 LAEYAT 246 (246)
T ss_dssp HHHHH-
T ss_pred HHHHhC
Confidence 999974
No 3
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=100.00 E-value=2.7e-45 Score=391.05 Aligned_cols=213 Identities=34% Similarity=0.542 Sum_probs=182.2
Q ss_pred hhhhhhhHH---hhhhhcc-CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHH
Q psy742 169 LLWYSCLLC---LYIWETL-MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLIT 244 (713)
Q Consensus 169 gtWL~TAfV---F~qa~~~-~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVlia 244 (713)
++|| |||| |.+|+++ .||+++|+++++||+++|++||+|.|.++++|++|+|++.+ ..+++.+||||+++
T Consensus 80 s~wl-TA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~-----~~~~~~lTA~vl~a 153 (297)
T cd02896 80 STWL-TAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEG-----SEGDVSLTAFVLIA 153 (297)
T ss_pred chhh-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccCCccc-----cCCCccchHHHHHH
Confidence 3999 9999 9999999 99999999999999999999999999999999999876532 23568899999999
Q ss_pred HHhcccccCCCCCchhHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHhcCCccHHHHHHHHHHhhhccCCceeecCC
Q psy742 245 LDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGILTQHARSEGGLTYWGKE 324 (713)
Q Consensus 245 L~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~~~~YtlAl~aYALaLa~~~~~~~al~~L~~~a~~~~~~~~W~~~ 324 (713)
|+|++..++........++.||++||+++.+.+. ++|++|+++|||++++++.+..++++|++++..+++..+|...
T Consensus 154 L~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~~~---~~Y~~Al~ayALal~~~~~~~~a~~~L~~~~~~d~~~~~~~~~ 230 (297)
T cd02896 154 LQEARSICPPEVQNLDQSIRKAISYLENQLPNLQ---RPYALAITAYALALADSPLSHAANRKLLSLAKRDGNGWYWWTI 230 (297)
T ss_pred HHhhhccccccchhhHHHHHHHHHHHHHhcccCC---ChHHHHHHHHHHHHcCChhhHHHHHHHHHHhhhCCCcceeccC
Confidence 9999864432222344688999999999988777 9999999999999999998889999999999888877766542
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-chhHHHHHHHhcccCCCCccchhhHHHHHHHHHH
Q psy742 325 PVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIE 403 (713)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-~a~~Iv~WL~~Qrn~~GGF~STQDTvvALqALa~ 403 (713)
.. +.|.. ..+.+.+||+||||||+++..++. .+.|||+||++|||++|||+||||||||||||++
T Consensus 231 ~~-----------~~~~~---~~~~~~~vE~TAYALLall~~~~~~~a~~iv~WL~~qr~~~Ggf~sTQdTvval~AL~~ 296 (297)
T cd02896 231 DS-----------PYWPV---PGPSAITVETTAYALLALLKLGDIEYANPIARWLTEQRNYGGGFGSTQDTVVALQALAE 296 (297)
T ss_pred cC-----------ccCCC---CCCchhhhHHHHHHHHHHHhcCCchhHHHHHHHHHhcCCCCCCeehHHHHHHHHHHHhc
Confidence 11 11111 123578999999999999999988 9999999999999999999999999999999998
Q ss_pred H
Q psy742 404 Y 404 (713)
Q Consensus 404 Y 404 (713)
|
T Consensus 297 y 297 (297)
T cd02896 297 Y 297 (297)
T ss_pred C
Confidence 7
No 4
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=100.00 E-value=6.6e-38 Score=333.65 Aligned_cols=207 Identities=33% Similarity=0.486 Sum_probs=174.3
Q ss_pred hhhhhhhHH---hhhhhcc-CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHH
Q psy742 169 LLWYSCLLC---LYIWETL-MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLIT 244 (713)
Q Consensus 169 gtWL~TAfV---F~qa~~~-~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVlia 244 (713)
++|| |||| |.+++.+ .||++.|+++++||.++|++||+|.+.++++|++|+|+ ....+.+||||++|
T Consensus 79 ~~wl-Ta~v~~~L~~a~~~~~v~~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~--------~~~~~~~TA~vl~a 149 (292)
T cd02897 79 STWL-TAFVLKSFAQARPFIYIDENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGG--------VDDEVALTAYVLIA 149 (292)
T ss_pred chhh-HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCC--------CCCCcchHHHHHHH
Confidence 3899 9999 8889988 99999999999999999999999999999999998643 22457899999999
Q ss_pred HHhcccccCCCCCchhHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHhcCCccHHHHHHHHHHhhhccCCceeecCC
Q psy742 245 LDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGILTQHARSEGGLTYWGKE 324 (713)
Q Consensus 245 L~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~~~~YtlAl~aYALaLa~~~~~~~al~~L~~~a~~~~~~~~W~~~ 324 (713)
|.+++.. . ....+.+|++||+++...+. ++|.+|+++|||++++++....+++.|...+..+++..||...
T Consensus 150 L~~~g~~--~----~~~~i~~a~~yL~~~~~~~~---~~y~~al~a~AL~~~~~~~~~~~~~~l~~~~~~~~~~~~W~~~ 220 (292)
T cd02897 150 LLEAGLP--S----ERPVVEKALSCLEAALDSIS---DPYTLALAAYALTLAGSEKRPEALKKLDELAISEDGTKHWSRP 220 (292)
T ss_pred HHhcCCc--c----ccHHHHHHHHHHHHhcccCC---CHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhccCCCCCCCcC
Confidence 9998741 1 23678999999999987666 9999999999999999777778899999888877777899764
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcC--Cc-chhHHHHHHHhcccCCCCccchhhHHHHHHHH
Q psy742 325 PVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ--EL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKAL 401 (713)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~--~~-~a~~Iv~WL~~Qrn~~GGF~STQDTvvALqAL 401 (713)
..+ ...+++.+ .+.+.+||+||||||+++..+ +. .+.++++||.+|||++|||+|||||++||+||
T Consensus 221 ~~~-------~~~~~~~~----~~~~~~ve~TAyaLlall~~~~~~~~~~~~~v~WL~~~q~~~Ggf~sTQdt~~al~AL 289 (292)
T cd02897 221 PPS-------EEGPSYYW----QAPSAEVEMTAYALLALLSAGGEDLAEALPIVKWLAKQRNSLGGFSSTQDTVVALQAL 289 (292)
T ss_pred CCc-------ccccccCC----CCCcchHHHHHHHHHHHHHcCCccHhHHHHHHHHHHHcCCCCCCcccHHHHHHHHHHH
Confidence 211 11222222 234679999999999999988 45 88899999999999999999999999999999
Q ss_pred HHH
Q psy742 402 IEY 404 (713)
Q Consensus 402 a~Y 404 (713)
++|
T Consensus 290 ~~y 292 (292)
T cd02897 290 AKY 292 (292)
T ss_pred HcC
Confidence 987
No 5
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.95 E-value=3.9e-27 Score=248.84 Aligned_cols=198 Identities=35% Similarity=0.501 Sum_probs=164.7
Q ss_pred hhhhhhHH---hhhhhcc-CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHH
Q psy742 170 LWYSCLLC---LYIWETL-MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITL 245 (713)
Q Consensus 170 tWL~TAfV---F~qa~~~-~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL 245 (713)
.|+ |||| |.+++++ .||+.+|+++++||.++|.+||+|.+..+..|+++. ++ ...+..+|||++++|
T Consensus 79 ~~~-Ta~~~~~L~~a~~~~~v~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~~----~~----~~~~~~~tA~al~~L 149 (282)
T cd02891 79 TWL-TAYVVKFLSQARKYIDVDENVLARALGWLVPQQKEDGSFRELGPVIHREMK----GG----VDDSVSLTAYVLIAL 149 (282)
T ss_pred hHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCCCCcCCCCCccCHhhc----CC----cCCCcchHHHHHHHH
Confidence 999 9999 7889988 999999999999999999999999999988887662 21 234567899999999
Q ss_pred HhcccccCCCCCchhHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHhcCCc-cHHHHHHHHHHhhhccCCceeecCC
Q psy742 246 DTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKAT-IAEAAFGILTQHARSEGGLTYWGKE 324 (713)
Q Consensus 246 ~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~~~~YtlAl~aYALaLa~~~-~~~~al~~L~~~a~~~~~~~~W~~~ 324 (713)
.+++..+ ...+.+|++||.++..... ++|++|+++|||++.|+. .+..+++.|.+.....+...+|...
T Consensus 150 ~~~g~~~-------~~~~~~a~~~L~~~~~~~~---~~~~~a~la~al~~~g~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 219 (282)
T cd02891 150 AEAGKAC-------DASIEKALAYLETQLDGLL---DPYALAILAYALALAGDSTRADEALKKLLEAAREKGGTAHWSLS 219 (282)
T ss_pred HHhcccc-------hHHHHHHHHHHHHhcccCC---ChHHHHHHHHHHHHcCccHHHHHHHHHHHHHhhhcCCcccccCC
Confidence 9887421 2478999999999987555 999999999999999864 4668888888888777666777210
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-chhHHHHHHHhcccCCCCccchhhHHHHHHHHHH
Q psy742 325 PVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIE 403 (713)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-~a~~Iv~WL~~Qrn~~GGF~STQDTvvALqALa~ 403 (713)
++.+ .+.++.+|+|+|+||+.+..++. .+.++++||.+||+..|+|.|||||++||+||++
T Consensus 220 -------------~~~~-----~~s~~~~~a~a~all~~~~~~~~~~~~~~~~~L~~~~~~~~~~~sTq~t~~al~AL~~ 281 (282)
T cd02891 220 -------------WPGD-----YGSSLRVEATAYALLALLKLGDLEEAGPIAKWLAQQRNSGGGFLSTQDTVVALQALAA 281 (282)
T ss_pred -------------CCCC-----CCchhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHh
Confidence 0111 13568999999999999987766 8899999999999999999999999999999998
Q ss_pred H
Q psy742 404 Y 404 (713)
Q Consensus 404 Y 404 (713)
|
T Consensus 282 y 282 (282)
T cd02891 282 Y 282 (282)
T ss_pred C
Confidence 6
No 6
>PF07677 A2M_recep: A-macroglobulin receptor; InterPro: IPR009048 This entry represents the receptor-binding domain (RBD) of alpha-2-macroglobulin proteins. The RBD is located at the C terminus, its structure having an immunoglobulin-like fold consists of a sandwich of nine strands in two sheets with a Greek-key topology [, ]. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005576 extracellular region; PDB: 1AYO_A 2B39_B 3HS0_C 3PRX_B 3PVM_D 3HRZ_C 3FRP_B 1EDY_A 3KLS_B 3KM9_B ....
Probab=99.91 E-value=1e-24 Score=191.89 Aligned_cols=90 Identities=34% Similarity=0.780 Sum_probs=80.7
Q ss_pred cceEEEEEecCcceeecccchHHHhccCCCCcceeEEEeCCEEEEEEecCCCce-eEEEEEEEEEeeeeccccceeEEEE
Q psy742 521 SGMAVLDVAIPTGYIIQQQKLDAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTE-TCINFTIERWFPVANMSRYLPIRVY 599 (713)
Q Consensus 521 s~MaiveV~lpSGf~~~~~~L~~l~~~~~~~~i~~~E~~d~~V~lYfd~l~~~~-~cv~f~~~~~~~V~~~~~pa~v~VY 599 (713)
||||||||+|||||+++.++|++|..... ..++|+|+++++|+||||++++++ .||+|.++|.++|+++ +||+|+||
T Consensus 1 S~Mai~eV~lpSGf~~~~~~l~~l~~~~~-~~~~r~E~~~~~V~lY~d~i~~~~~~c~~~~~~~~~~V~~~-~pa~v~VY 78 (91)
T PF07677_consen 1 SNMAIMEVGLPSGFVPDQDSLKQLQNSND-VKLKRYEVDDNKVILYFDEIPSEEEVCFSFRLEREFPVGNL-QPAPVKVY 78 (91)
T ss_dssp BSSEEEEEE-STTEEEEHHHHHHHHCSTT-ESESEEEEETTEEEEEESEBCSSS-EEEEEEEEESSEESSS---EEEEEE
T ss_pred CceEEEEEcCCCceeEChhHhhccccCCc-eeEEEEEEcCCEEEEEEeecccCccEEEEEEEEEEeeeccc-cceEEEEE
Confidence 69999999999999999999999986433 347799999999999999999966 9999999999999998 69999999
Q ss_pred eccCCCceeEEEe
Q psy742 600 DYYAPERFNETIF 612 (713)
Q Consensus 600 DYY~P~~~~~~~y 612 (713)
|||+|+++|+++|
T Consensus 79 DYY~p~~~~~~~Y 91 (91)
T PF07677_consen 79 DYYDPDERATKFY 91 (91)
T ss_dssp ETTEEEEEEEEEE
T ss_pred ecCCCCceeEEEC
Confidence 9999999999887
No 7
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=99.73 E-value=1.3e-15 Score=189.66 Aligned_cols=521 Identities=15% Similarity=0.121 Sum_probs=279.3
Q ss_pred eccceeEeeeeeEEEEEE---EEEEeeCCCEEEEeccCCCccceeeEEeeCCcccccccccEEEEEEEEecceeeEEEEE
Q psy742 14 LAGQENMQSTIRSFAVSL---SAEMAPSATIVVYNVGRNGDVIADSLTFPVNGISRNNVNATVVFLPIVPVHLGDIDVTV 90 (713)
Q Consensus 14 l~~~~~~~~~~~~f~~~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~F~I~p~~lG~i~I~V 90 (713)
+.||.+.+.++.+|-.+= .+ +++...+.+.+. -..|++++...+ +..++|+++++. |...+.+
T Consensus 1024 lapGD~~~~~l~v~N~~~~~g~~-~~~~~~l~~~~~-----~~~~~~~l~~g~-------~~~l~~~l~a~~-g~g~~~~ 1089 (1621)
T COG2373 1024 LAPGDRSSAGLDVFNLTGKAGDV-LTVEGTLKFNGK-----EAPQTLTLAEGS-------ATTLFFPLRALD-GSGKIDA 1089 (1621)
T ss_pred ecCCccceeEEEEeccCCCCcce-eeccceeccccc-----ccceEEEecCCC-------ceEEEEEeeccC-CCceeeE
Confidence 456666666666665411 02 333333333333 267888888887 889999999987 7777777
Q ss_pred EEEec-CCCceEEEEEEEecCCeEEEEeEeeeeecccccceeeeeeeccCCCCccCCC-CceEEEEecC-----CCcccc
Q psy742 91 TASSL-IGRDTVTRKLHIIADGLPQHRHQSILLDLSNRAYVFQYLHVNVTETPIIPYD-VDRYYVYGSS-----INSSSI 163 (713)
Q Consensus 91 ~A~s~-~~sD~V~~~L~V~peGv~~~~~~s~~ld~~~~~~~~~~~~~~~p~~~~ip~s-~~~~~v~Gs~-----~~l~sL 163 (713)
+.... ..+|.+++.+.|.|...+++..+...+.+... . ..+.+.. ..|.+ ..+..+.++. ..++.|
T Consensus 1090 ~~~~~~~~~~~~~~~~~vr~~~~~~~~~~~~~l~~~~~--~----~~~~l~~-l~~~~~~~~l~ls~~~~~~~~~~~~~L 1162 (1621)
T COG2373 1090 TLSVSGQVGDKLERHLNVRPAVPPQTQVKTVVLAPGFT--I----SGDLLAG-LSPQAVNAQLQLSGTPAADIAALLDVL 1162 (1621)
T ss_pred EEEecCcccceeeeeeccccCccceeeeEEEecccccc--c----Cchhhhh-cCccccceEEEeccCccccHHHHHHHH
Confidence 66654 37899999999999999999888888876411 0 0111111 23333 2244454443 456789
Q ss_pred ccccch--hhhhhhHHhh--hhhc-c-C---CCH---HHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcc
Q psy742 164 STLKML--LWYSCLLCLY--IWET-L-M---LPL---QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVK 231 (713)
Q Consensus 164 i~~P~g--tWL~TAfVF~--qa~~-~-~---ID~---~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~ 231 (713)
.+|||| +.+ ++=.|+ -+.+ . . .|. +.|+.++..|.+.|..||+|.. |.+. .
T Consensus 1163 ~~YPygc~EQt-~S~~~pll~~~~~~~~~~~~~~~~~~~l~~a~~rL~~~Q~~~G~F~~--------W~~~--------~ 1225 (1621)
T COG2373 1163 DDYPYGCAEQT-ASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGSNGAFGL--------WGGN--------G 1225 (1621)
T ss_pred HhCCccchhhh-hhhHHHHHhhhhhhccccccchhHHHHHHHHHHHHHhhhhcCCceee--------cCCC--------C
Confidence 999999 555 332211 1111 1 1 222 5688999999999999999998 5321 3
Q ss_pred cCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhhc-cCCCCh------HHHHHHHHHHHhcCCccHHHH
Q psy742 232 FRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRLL-KDFGDP------YEVAIVAYALRLSKATIAEAA 304 (713)
Q Consensus 232 ~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~-~~~~~~------YtlAl~aYALaLa~~~~~~~a 304 (713)
+++.|+|||+..+|.+|+. .++.++ ..+++++..++.+.+.+- ..+.+. -.+|+++|.||..+++.....
T Consensus 1226 ~~d~~ltaYa~~Fl~~A~e--~g~~vp-~~~~~~~~~~~~~~l~n~~~~~~~~~~l~~~~~~ay~L~~lA~~~~~~~~~l 1302 (1621)
T COG2373 1226 SGDPWLTAYAVDFLLRARE--QGYSVP-SDALNQMLERLLEYLQNPGLAYADEVELRRRALQAYALYVLARNGDAALADL 1302 (1621)
T ss_pred CcchhhhHHHHHHHhhhhh--cCcCCC-HHHHHHHHHHHHHHHhCcCccccchhhhhHHHHHHHHHHHHhhcCCcccchh
Confidence 4689999999999999975 567665 367788766555555331 011122 234666677776664322111
Q ss_pred HHHHHHhhh-cc---------CCceeecCCCCCCC----CCC---cc-CCCCCCCCCCCCCCCcchhhHHHHHHHHHhhc
Q psy742 305 FGILTQHAR-SE---------GGLTYWGKEPVPAP----PSK---IE-NQKPFLLPRLPYKYDAINIETTAYALLVYVSR 366 (713)
Q Consensus 305 l~~L~~~a~-~~---------~~~~~W~~~~~~~~----~~~---~~-~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~ 366 (713)
...+++... -. -....|........ ... .+ -..++|+. ..-..+..+|++..+..
T Consensus 1303 r~~~d~~~~~~~s~l~~a~laa~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~y~~~l~~~a~~l~l~~ 1375 (1621)
T COG2373 1303 RGILDQSLDDWESPLALAQLAAALKLLGDKARAEKALAAALETARAAVKDYRWPLG-------DYGSPLRDGALMLALAA 1375 (1621)
T ss_pred hhhcccccccccChhHHHHHHHHHHHHHHhhhhhhhhhhhhhhccccccCCCcchh-------hhhhhhhccHHHHHHHH
Confidence 111111000 00 00122221110000 000 00 00111110 11122333333333321
Q ss_pred --CCc-chhHHHHHHHhcccCCCCccchhh-HHHHHHHHHHHHHhcccCCcceeEEEEEEecCCCceeEEEEeccCccee
Q psy742 367 --QEL-LTDPIVKWLNSQRLTDGGWASTQD-TAMAMKALIEYTNRHRLRDVSYLTVSIEATALPGQVKYLHVKNNNLAQL 442 (713)
Q Consensus 367 --~~~-~a~~Iv~WL~~Qrn~~GGF~STQD-TvvALqALa~Ya~~~~~~~~~~l~v~V~~~~~~~~~~~~~I~~~N~~~~ 442 (713)
++. .+.+-+-|+..+....+.|.|||. +.+++ .+.... . .+..+..+..+.+-..........+...
T Consensus 1376 ~~~~~~~~~~~~~~~l~~~~~~~~~~s~q~~~~l~~-----~~~~~~--~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~- 1446 (1621)
T COG2373 1376 ELKLLPAIQPTLLRALALEWFDKRYLSTQEQAALLL-----AARALQ--A-GKWVAQKQVNGEELTGWKGLRRNGNSLQ- 1446 (1621)
T ss_pred HhccCCcchHHHHHHHHHHHhhccccchhhhhhhhc-----cccccC--c-ccccccccccccccccccccCCCcchhh-
Confidence 334 555555555555566777999996 33222 222111 1 2344445443221000011111111111
Q ss_pred EeEEecCCCceEEEEEEeeeEEEEEEEEEEeeccccccCCCCCCCeeEEEEe-ecc--------CCCCceeEEEEEEEee
Q psy742 443 QRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQPPVPAFALNTRA-NFH--------GRNQSHITYHSCQRWI 513 (713)
Q Consensus 443 q~~~lp~~~g~v~v~a~G~G~a~~q~~~~Yn~~~~~~~~~~~~~~F~L~v~~-~~~--------~~~~~~~~l~vC~~~~ 513 (713)
.....+...|.....+.+...- .|... .++....+.++.+. ... -+.+..+.+.+.++
T Consensus 1447 --------~~~~~~~n~~~~~~~~~~~~~~-~pvq~--~~~~~~gl~i~R~~~~~~gk~v~~~~l~~g~~~~v~l~v~-- 1513 (1621)
T COG2373 1447 --------LAPLVFVNTGKSPLWAAVTAVG-YPVQA--PRAAYNGLTIEREYLDEDGKPVDPVELRSGDLYLVVLTVT-- 1513 (1621)
T ss_pred --------cccceeccCcccceEEEEeccc-cccCc--CchhccCceEEEEEEeeCceECccccccCCCEEEEEEEEE--
Confidence 1112244444444443333322 12211 11233455554431 111 12344555555555
Q ss_pred ccCCCCccceEEEEEecCcceeecccchHHHhccC-------CCCcceeEEEeCCEEEEEEecCCCceeEEEEEEEEEee
Q psy742 514 YQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTR-------NVPNLQRARFQEQKVLFYFDYLDDTETCINFTIERWFP 586 (713)
Q Consensus 514 ~~~~~~~s~MaiveV~lpSGf~~~~~~L~~l~~~~-------~~~~i~~~E~~d~~V~lYfd~l~~~~~cv~f~~~~~~~ 586 (713)
... ....+.|.| -||+|||+++..+..-.... ..-.+.|.|+++|+++.|+| ...+.+.+.+-++..-|
T Consensus 1514 ~~~--~~~~~~v~D-lLPaG~Ev~~~~~~~~~~~n~~~~~~~~~~~~~~~e~r~DR~va~~~-~~~~~~~l~Y~vRAvtp 1589 (1621)
T COG2373 1514 AQN--DVPDLLVED-LLPAGFEVENTTLGIGSAPNEALLSWLESADAEHGEIRDDRFVAALD-DEGEPVTLAYLVRAVTP 1589 (1621)
T ss_pred ecC--CccceEEEe-cCCCceEEeccccccccccccchhhHHHHHHhhhhhhccceEEEEec-cCCCceEEEEEEEEecC
Confidence 221 223455554 59999999999876411100 00135688999999999999 55688999999999999
Q ss_pred eeccccceeEEEEeccCCCceeEE
Q psy742 587 VANMSRYLPIRVYDYYAPERFNET 610 (713)
Q Consensus 587 V~~~~~pa~v~VYDYY~P~~~~~~ 610 (713)
..+.-+| ++|+++|.|+.++.+
T Consensus 1590 Gtf~lPp--a~ve~MY~p~~~A~~ 1611 (1621)
T COG2373 1590 GTFQLPP--ARVEDMYRPQLRART 1611 (1621)
T ss_pred ceecCCh--hHhhhhcChhhHhhc
Confidence 9886533 499999999988665
No 8
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.70 E-value=2.3e-16 Score=171.84 Aligned_cols=209 Identities=21% Similarity=0.236 Sum_probs=144.0
Q ss_pred hhhhHH---hhhhhcc-----CCCHHHHHHHHHHHHhccCCCcceeeccccccc-------cccccCCCCCCCcccCcce
Q psy742 172 YSCLLC---LYIWETL-----MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDR-------KVNSSLNWPNDDVKFRNIS 236 (713)
Q Consensus 172 L~TAfV---F~qa~~~-----~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~-------~m~g~~~Gg~~~~~~~~v~ 236 (713)
+ ||+| |.++..+ .++++.|+++++||.++|++||+|.+..+..+. ++.++..+ ....+.
T Consensus 93 ~-Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 166 (348)
T cd02889 93 D-TAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMI-----DPPYVE 166 (348)
T ss_pred C-hHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCcc-----CCCCcc
Confidence 5 9999 6666655 478899999999999999999999864432221 12221111 234578
Q ss_pred ehHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhhccC------CCChHHHHHHHHHHHhcCCc----cHHHHHH
Q psy742 237 LTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKD------FGDPYEVAIVAYALRLSKAT----IAEAAFG 306 (713)
Q Consensus 237 LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~------~~~~YtlAl~aYALaLa~~~----~~~~al~ 306 (713)
+||+++++|.++++........+...+.++++||.+....-.. ....|..|++++||..++.+ ....+++
T Consensus 167 ~Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~w~~~~~~~~~y~ta~a~~aL~~~g~~~~~~~~~~~~~ 246 (348)
T cd02889 167 CTGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGSWYGRWGVCFIYGTWFALEALAAAGEDENSPYVRKACD 246 (348)
T ss_pred hHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcchHHHHHHHHHHHHcCCCcCcHHHHHHHH
Confidence 9999999999887532221112335789999999987643111 12678999999999999864 2356667
Q ss_pred HHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc---chhHHHHHHHhccc
Q psy742 307 ILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL---LTDPIVKWLNSQRL 383 (713)
Q Consensus 307 ~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~---~a~~Iv~WL~~Qrn 383 (713)
.|.+....+++ |...... . ....+. ...+.++++|||+|++++..++. .+.++++||.++||
T Consensus 247 ~L~~~Q~~dG~---w~~~~~~-----~--~~~~~~-----~~~~~~~~~Ta~al~aL~~~g~~~~~~v~~a~~wL~~~Q~ 311 (348)
T cd02889 247 WLLSKQNPDGG---WGESYES-----Y--EDPSYA-----GGGRSTVVQTAWALLALMAAGEPDSEAVKRGVKYLLNTQQ 311 (348)
T ss_pred HHHHccCCCCC---cCCcccc-----c--cccccc-----CCCCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Confidence 77776655553 6432100 0 000011 12466999999999999998753 67889999999999
Q ss_pred CCCCccchhhHHHHHHHH
Q psy742 384 TDGGWASTQDTAMAMKAL 401 (713)
Q Consensus 384 ~~GGF~STQDTvvALqAL 401 (713)
.+|||.|+|++.+++..+
T Consensus 312 ~dG~f~~~~~~~~~~~~~ 329 (348)
T cd02889 312 EDGDWPQEEITGVFFKNF 329 (348)
T ss_pred CCCCcCCceeeeeeccee
Confidence 999999999988776333
No 9
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.60 E-value=2.9e-14 Score=149.12 Aligned_cols=200 Identities=30% Similarity=0.320 Sum_probs=143.1
Q ss_pred hhhhhhhHH---hhhhhcc-CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHH
Q psy742 169 LLWYSCLLC---LYIWETL-MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLIT 244 (713)
Q Consensus 169 gtWL~TAfV---F~qa~~~-~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVlia 244 (713)
+.|+ |||+ |..+.+. .++...+.++++||.++|++||+|.+..+..++. +. ...++..|||++.+
T Consensus 81 ~~~~-T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~------~~----~~~~~~~t~~al~a 149 (300)
T cd00688 81 SLWL-TAYALKALLLAGDYIAVDRIDLARALNWLLSLQNEDGGFREDGPGNHRI------GG----DESDVRLTAYALIA 149 (300)
T ss_pred chHh-HHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCCCCeeeecCCCCcc------cC----CCCcccHHHHHHHH
Confidence 4899 9999 6666655 6788899999999999999999998855332210 00 23567899999999
Q ss_pred HHhcccccCCCCCchhHHHHHHHHHHHHhhhhcc-----CCCChHHHHHHHHHHHhcCC---ccHHHHHHHHHHhhhccC
Q psy742 245 LDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLK-----DFGDPYEVAIVAYALRLSKA---TIAEAAFGILTQHARSEG 316 (713)
Q Consensus 245 L~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~-----~~~~~YtlAl~aYALaLa~~---~~~~~al~~L~~~a~~~~ 316 (713)
|.+++.... ...+.++++||.++...-. ...++|..|.+++||..++. +....+++.|.+....++
T Consensus 150 L~~~~~~~~------~~~~~~~~~~l~~~q~~~g~~~~~~~~~~~~t~~~~~aL~~~~~~~~~~~~~~~~~L~~~q~~~g 223 (300)
T cd00688 150 LALLGKLDP------DPLIEKALDYLLSCQNYDGGFGPGGESHGYGTACAAAALALLGDLDSPDAKKALRWLLSRQRPDG 223 (300)
T ss_pred HHHcCCCCC------cHHHHHHHHHHHHHhcCCCCcCCCccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCC
Confidence 998774211 2468999999999875300 01389999999999999986 335678888887776665
Q ss_pred CceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-chhHHHHHHHhcccCCCCccc-----
Q psy742 317 GLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-LTDPIVKWLNSQRLTDGGWAS----- 390 (713)
Q Consensus 317 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-~a~~Iv~WL~~Qrn~~GGF~S----- 390 (713)
+..++... +. ..++......++++|+++....+. ...++++||..+|+..|||.+
T Consensus 224 ~~~~~~~~-----------------~~--~~~~~~~~~~~~~aL~~~~~~~~~~~~~~~~~~L~~~q~~~G~w~~~~~~~ 284 (300)
T cd00688 224 GWGEGRDR-----------------TN--KLSDSCYTEWAAYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKS 284 (300)
T ss_pred CcCccccC-----------------CC--CcCchHHHHHHHHHHHHHhhhcCcccHHHHHHHHHhccCCCCCcCcCCCCC
Confidence 43322110 00 001234445555555555443234 788999999999999999999
Q ss_pred --hhhHHHHHHHHHHH
Q psy742 391 --TQDTAMAMKALIEY 404 (713)
Q Consensus 391 --TQDTvvALqALa~Y 404 (713)
||+|++||+||+.|
T Consensus 285 ~~~~~t~~al~aL~~~ 300 (300)
T cd00688 285 YDTQHTVFALLALSLY 300 (300)
T ss_pred CcchhhHHHHHHHhcC
Confidence 99999999999864
No 10
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=99.50 E-value=2.6e-13 Score=159.25 Aligned_cols=207 Identities=22% Similarity=0.263 Sum_probs=141.1
Q ss_pred hhhhHH---hhhhhcc-----CCCHHHHHHHHHHHHhccCCCcceeeccc------c---ccccccccCCCCCCCcccCc
Q psy742 172 YSCLLC---LYIWETL-----MLPLQVITQAVSWVLDHQTPDGSFYETTW------L---VDRKVNSSLNWPNDDVKFRN 234 (713)
Q Consensus 172 L~TAfV---F~qa~~~-----~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~------v---~h~~m~g~~~Gg~~~~~~~~ 234 (713)
. ||+| |..++.. .++.+.|+++++||+++|++||+|....+ + .+.++.|+.. ...+.
T Consensus 376 ~-Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~-----~d~~~ 449 (634)
T cd02892 376 D-TAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIM-----IDPPY 449 (634)
T ss_pred c-hHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccc-----cCCCC
Confidence 6 9999 5555544 27789999999999999999999974221 1 1112222110 12345
Q ss_pred ceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhhccC------CCChHHHHHHHHHHHhcCCc-----cHHH
Q psy742 235 ISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKD------FGDPYEVAIVAYALRLSKAT-----IAEA 303 (713)
Q Consensus 235 v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~------~~~~YtlAl~aYALaLa~~~-----~~~~ 303 (713)
+.+||+++.+|...++..+....++...++||++||++.-+.-.. ....|..+.+.+||..++.. ....
T Consensus 450 ~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~ 529 (634)
T cd02892 450 VECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRWGVCYIYGTWFALEALAAAGEDYENSPYIRK 529 (634)
T ss_pred cchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHccCCCCCccccCCCccHHHHHHHHHHHHHhCCcccCcHHHHH
Confidence 779999999998876432221112346789999999997643111 12578999999999998864 2457
Q ss_pred HHHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc---chhHHHHHHHh
Q psy742 304 AFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL---LTDPIVKWLNS 380 (713)
Q Consensus 304 al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~---~a~~Iv~WL~~ 380 (713)
+.+.|.+.+..+|+ |..... + +.+ ..|. .+....++.||||||+++..++. ...+.++||.+
T Consensus 530 a~~~L~s~Q~~DGg---Wge~~~----s-~~~--~~~~-----~~~~s~~~~TA~AllaLl~~g~~~~~~i~r~i~wL~~ 594 (634)
T cd02892 530 ACDFLLSKQNPDGG---WGESYL----S-YED--KSYA-----GGGRSTVVQTAWALLALMAAGEPDSEAVERGIKYLLN 594 (634)
T ss_pred HHHHHHhcCCCCCC---CCCccc----c-ccC--cccC-----CCCCCcHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 88888887766654 654211 0 000 0111 12356899999999999998764 56788999999
Q ss_pred cccCCCCccchhhHHHHHH
Q psy742 381 QRLTDGGWASTQDTAMAMK 399 (713)
Q Consensus 381 Qrn~~GGF~STQDTvvALq 399 (713)
+|+.+|||.++|+|.+...
T Consensus 595 ~Q~~~G~w~~~~~~g~~~~ 613 (634)
T cd02892 595 TQLPDGDWPQEEITGVGFP 613 (634)
T ss_pred cCCCCCCCCCcccccccCC
Confidence 9999999999999966543
No 11
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.02 E-value=7.9e-09 Score=107.97 Aligned_cols=184 Identities=21% Similarity=0.217 Sum_probs=130.6
Q ss_pred Cccccccccch------------hhhhhhHH---hhhhhc---c-CCCHHHHHHHHHHHHhccCCCcceeeccccccccc
Q psy742 159 NSSSISTLKML------------LWYSCLLC---LYIWET---L-MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKV 219 (713)
Q Consensus 159 ~l~sLi~~P~g------------tWL~TAfV---F~qa~~---~-~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m 219 (713)
+++.|+++|++ +|. |+|+ +..... - ..+...+.+++.||.+.|++||+|....
T Consensus 4 ~~~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~dG~~~~~~------- 75 (300)
T cd00688 4 HLKYLLRYPYGDGHWYQSLCGEQTWS-TAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSDGGFSGWG------- 75 (300)
T ss_pred HHHHHHHccccCCCccccCCcCcHHH-HHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCCCCccCCC-------
Confidence 35677777764 778 8888 222221 1 2456889999999999999999997732
Q ss_pred cccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhhc-------c-------CCCChHH
Q psy742 220 NSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRLL-------K-------DFGDPYE 285 (713)
Q Consensus 220 ~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~-------~-------~~~~~Yt 285 (713)
+. ...+++.|||++.+|..+++.. . .....+.++++||.+.-..- . ...+...
T Consensus 76 -----~~----~~~~~~~T~~~~~~l~~~~~~~---~-~~~~~~~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~~~~~~~ 142 (300)
T cd00688 76 -----GN----DYPSLWLTAYALKALLLAGDYI---A-VDRIDLARALNWLLSLQNEDGGFREDGPGNHRIGGDESDVRL 142 (300)
T ss_pred -----CC----CCcchHhHHHHHHHHHHcCCcc---c-cCHHHHHHHHHHHHHccCCCCCeeeecCCCCcccCCCCcccH
Confidence 10 1357899999999999876421 1 12357899999999875320 0 0236677
Q ss_pred HHHHHHHHHhcCCc----cHHHHHHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHH
Q psy742 286 VAIVAYALRLSKAT----IAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALL 361 (713)
Q Consensus 286 lAl~aYALaLa~~~----~~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALL 361 (713)
.|.+.++|++++.. ....+++.|.+....+++ | . . ....+...|++++.
T Consensus 143 t~~al~aL~~~~~~~~~~~~~~~~~~l~~~q~~~g~---~-~-~----------------------~~~~~~~~t~~~~~ 195 (300)
T cd00688 143 TAYALIALALLGKLDPDPLIEKALDYLLSCQNYDGG---F-G-P----------------------GGESHGYGTACAAA 195 (300)
T ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhcCCCC---c-C-C----------------------CccccHHHHHHHHH
Confidence 88999999999874 456788888777655543 3 1 0 01346677899999
Q ss_pred HHhhcCC--c-chhHHHHHHHhcccCCCCccc
Q psy742 362 VYVSRQE--L-LTDPIVKWLNSQRLTDGGWAS 390 (713)
Q Consensus 362 a~l~~~~--~-~a~~Iv~WL~~Qrn~~GGF~S 390 (713)
++...+. . .....++||.+.++..|||..
T Consensus 196 aL~~~~~~~~~~~~~~~~~L~~~q~~~g~~~~ 227 (300)
T cd00688 196 ALALLGDLDSPDAKKALRWLLSRQRPDGGWGE 227 (300)
T ss_pred HHHHcCCcchHHHHHHHHHHHHhcCCCCCcCc
Confidence 9988776 3 778899999999999999974
No 12
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=98.90 E-value=3.8e-08 Score=115.33 Aligned_cols=216 Identities=20% Similarity=0.241 Sum_probs=137.8
Q ss_pred hhhhhhHH---hhhhh-cc-CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCC-CCCC-CcccCcceehHHHH
Q psy742 170 LWYSCLLC---LYIWE-TL-MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLN-WPND-DVKFRNISLTAHVL 242 (713)
Q Consensus 170 tWL~TAfV---F~qa~-~~-~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~-Gg~~-~~~~~~v~LTAyVl 242 (713)
.|= ||.| +.... +- ......|.++++||+++|++||+|....+--+..|-+.++ ++.+ ......+.+||.++
T Consensus 380 ~dd-Ta~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l 458 (635)
T TIGR01507 380 VDD-TAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVL 458 (635)
T ss_pred chh-HHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHH
Confidence 667 9999 33331 11 2335799999999999999999996422111111111111 1000 00123456899999
Q ss_pred HHHHhcccccCCCCCchhHHHHHHHHHHHHhhhhccC----C--CChHHHHHHHHHHHhcCC----ccHHHHHHHHHHhh
Q psy742 243 ITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKD----F--GDPYEVAIVAYALRLSKA----TIAEAAFGILTQHA 312 (713)
Q Consensus 243 iaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~----~--~~~YtlAl~aYALaLa~~----~~~~~al~~L~~~a 312 (713)
.||...+. .. ....++||++||++.-+.-.. + ...|.-+.+.-||+.++. +....+.+-|.+.+
T Consensus 459 ~al~~~g~-----~~-~~~~i~rav~~L~~~Q~~dG~W~g~wg~~~~Y~T~~al~aL~~~g~~~~~~~i~rAv~wL~~~Q 532 (635)
T TIGR01507 459 ECLGSFGY-----DD-AWPVIERAVEYLKREQEPDGSWFGRWGVNYLYGTGAVLSALKAVGIDTREPYIQKALAWLESHQ 532 (635)
T ss_pred HHHHHhCC-----Cc-hhHHHHHHHHHHHHccCCCCCCccCCCCccccHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhc
Confidence 99987652 11 146899999999997542111 1 246777777788887763 23457888898876
Q ss_pred hccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc---chhHHHHHHHhcccCCCCcc
Q psy742 313 RSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL---LTDPIVKWLNSQRLTDGGWA 389 (713)
Q Consensus 313 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~---~a~~Iv~WL~~Qrn~~GGF~ 389 (713)
..+|+ |..... + ++ .+.+ ..++ ..++..||+||++|...++. ...+.++||.++++.+|||.
T Consensus 533 ~~DGG---Wge~~~----s-y~--~~~~----~g~g-~s~~s~TA~AL~AL~~ag~~~~~~I~rav~~L~~~Q~~dG~W~ 597 (635)
T TIGR01507 533 NPDGG---WGEDCR----S-YE--DPAY----AGKG-ASTASQTAWALIALIAAGRAESEAARRGVQYLVETQRPDGGWD 597 (635)
T ss_pred CCCCC---CCCCCc----c-cc--cccc----cCCC-CCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhcCCCCCCC
Confidence 66654 653210 0 00 0011 0111 35889999999999987754 66789999999999999998
Q ss_pred chhh-----------------HHHHHHHHHHHHHh
Q psy742 390 STQD-----------------TAMAMKALIEYTNR 407 (713)
Q Consensus 390 STQD-----------------TvvALqALa~Ya~~ 407 (713)
.+.- =++.|.||+.|.+.
T Consensus 598 e~~~~g~gfp~~~yi~Y~~Y~~~fpl~ALg~y~~~ 632 (635)
T TIGR01507 598 EPYYTGTGFPGDFYLGYHMYRHVFPLLALARYKQA 632 (635)
T ss_pred CcccccCcccceeeecccchhhHhHHHHHHHHHHh
Confidence 7642 35689999999763
No 13
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=98.89 E-value=4.1e-08 Score=115.10 Aligned_cols=197 Identities=22% Similarity=0.305 Sum_probs=126.7
Q ss_pred hhHH---hhhhhcc-C-----CCHHHHHHHHHHHHhccCCCcceeeccc-----ccc----ccccccCCCCCCCcccCcc
Q psy742 174 CLLC---LYIWETL-M-----LPLQVITQAVSWVLDHQTPDGSFYETTW-----LVD----RKVNSSLNWPNDDVKFRNI 235 (713)
Q Consensus 174 TAfV---F~qa~~~-~-----ID~~~I~~ai~WL~~~Q~~dG~F~e~g~-----v~h----~~m~g~~~Gg~~~~~~~~v 235 (713)
||.+ +..+++. . ++...|.++++||++.|++||+|....+ .++ .++-+... .....+
T Consensus 376 Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~-----~d~~~~ 450 (634)
T TIGR03463 376 TAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCM-----TDVSYV 450 (634)
T ss_pred HHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccc-----cCCCcC
Confidence 7777 3334433 1 5568899999999999999999983211 000 00000000 023457
Q ss_pred eehHHHHHHHHhcccccCCC-CCchhHHHHHHHHHHHHhhhhccC----C--CChHHHHHHHHHHHhcCCc----cHHHH
Q psy742 236 SLTAHVLITLDTVKDLTGGL-GARVSLAQSKAIKWLERNLRLLKD----F--GDPYEVAIVAYALRLSKAT----IAEAA 304 (713)
Q Consensus 236 ~LTAyVliaL~ea~~l~~g~-~~~~~~~~~kA~~yLe~~~~~~~~----~--~~~YtlAl~aYALaLa~~~----~~~~a 304 (713)
..||.++.+|...++..+.. ..++..++.+|++||.+.-+.-.. + ...|..+.+.-||..+|.+ ....+
T Consensus 451 d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg~~~~Y~T~~al~aL~~~G~~~~~~~i~rA 530 (634)
T TIGR03463 451 ECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWGVCFTYGTFHGVMGLRAAGASPDDMALQRA 530 (634)
T ss_pred cHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcHHHHHHHHHHHHcCCCcCcHHHHHH
Confidence 89999999998765322211 112346789999999997542111 1 2578888888899887753 24578
Q ss_pred HHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc---chhHHHHHHHhc
Q psy742 305 FGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL---LTDPIVKWLNSQ 381 (713)
Q Consensus 305 l~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~---~a~~Iv~WL~~Q 381 (713)
.+-|.+....+|+ |...-. + +. .+.|.+ +....+..||+||++|+..+.. ...+.++||.++
T Consensus 531 ~~~Ll~~Q~~DGg---Wg~~~~----s-~~--~~~y~~-----~~~S~~~~TA~Al~aL~~~g~~~~~~i~rgi~~L~~~ 595 (634)
T TIGR03463 531 AAWLRSYQRADGG---WGEVYE----S-CL--QARYVE-----GKQSQAVMTSWALLALAEAGEGGHDAVQRGVAWLRSR 595 (634)
T ss_pred HHHHHHccCCCCC---ccCccC----c-cc--cccccC-----CCCCcHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHh
Confidence 8888877665553 643210 0 00 011111 1246789999999999987754 567899999999
Q ss_pred ccCCCCccc
Q psy742 382 RLTDGGWAS 390 (713)
Q Consensus 382 rn~~GGF~S 390 (713)
|+.+|||..
T Consensus 596 Q~~dG~W~~ 604 (634)
T TIGR03463 596 QQEDGRWPR 604 (634)
T ss_pred CCCCCCCCC
Confidence 999999985
No 14
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=98.82 E-value=8e-08 Score=112.52 Aligned_cols=201 Identities=21% Similarity=0.297 Sum_probs=127.4
Q ss_pred CCCHHHHHHHHHHHHhccCCCcceeeccccccc----cccc-cCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCch
Q psy742 185 MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDR----KVNS-SLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARV 259 (713)
Q Consensus 185 ~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~----~m~g-~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~ 259 (713)
.++.+.+.++++||++.|++||+|....+--.. .++. -+.+.. ......+..|+.++.||...+.- ...+
T Consensus 384 ~~~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~-~~d~~~~~~T~~~l~aL~~~~~r----~~~~ 458 (621)
T TIGR01787 384 HVKRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDI-MIDPPYVDVTARVIQALGAFGHR----ADEI 458 (621)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccc-cccCCCCchHHHHHHHHHHhcCc----cHhH
Confidence 577789999999999999999999742110000 0000 000000 00123346899999999876420 0113
Q ss_pred hHHHHHHHHHHHHhhhhccC----C--CChHHHHHHHHHHHhcCCc-----cHHHHHHHHHHhhhccCCceeecCCCCCC
Q psy742 260 SLAQSKAIKWLERNLRLLKD----F--GDPYEVAIVAYALRLSKAT-----IAEAAFGILTQHARSEGGLTYWGKEPVPA 328 (713)
Q Consensus 260 ~~~~~kA~~yLe~~~~~~~~----~--~~~YtlAl~aYALaLa~~~-----~~~~al~~L~~~a~~~~~~~~W~~~~~~~ 328 (713)
...++||++||.+.-+.-.. + ...|.-+.+.-||+.++.. ....+++-|.+....+|| |.....
T Consensus 459 ~~~i~rAl~~L~~~Q~~DGsw~g~wg~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGG---Wge~~~-- 533 (621)
T TIGR01787 459 RNVLERALEYLRREQRADGSWFGRWGVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGG---WGEDCF-- 533 (621)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccCCCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCC---CCcCCc--
Confidence 46899999999987542110 1 1357788888889888743 246788888877666654 653210
Q ss_pred CCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc---chhHHHHHHHhcccCCCCccchhh------------
Q psy742 329 PPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL---LTDPIVKWLNSQRLTDGGWASTQD------------ 393 (713)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~---~a~~Iv~WL~~Qrn~~GGF~STQD------------ 393 (713)
+ ...+.|.+ . ...++..|||||++++..+.. ...+.++||.+.|+.+|||....-
T Consensus 534 --s---~~~~~y~~----~-~~S~~s~Ta~AL~AL~~ag~~~~~ai~rgv~~L~~~Q~~dG~w~~~~~~g~~~p~~~~i~ 603 (621)
T TIGR01787 534 --S---YEDPSYVG----S-GGSTPSQTGWALMALIAAGEADSEAIERGVKYLLETQRPDGDWPQEYITGVGFPKNFYLK 603 (621)
T ss_pred --c---ccccccCC----C-CCCCHHHHHHHHHHHHHcCccchHHHHHHHHHHHHhCCCCCCCCCccccCCCCcccceec
Confidence 0 00011111 1 246899999999999987754 567899999999999999986543
Q ss_pred -----HHHHHHHHHHHH
Q psy742 394 -----TAMAMKALIEYT 405 (713)
Q Consensus 394 -----TvvALqALa~Ya 405 (713)
=++.|.||+.|.
T Consensus 604 Y~~Y~~~fpl~ALg~y~ 620 (621)
T TIGR01787 604 YTNYRNIFPLWALGRYR 620 (621)
T ss_pred ccccchhhHHHHHHHHh
Confidence 234677777764
No 15
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=98.79 E-value=1.1e-07 Score=101.51 Aligned_cols=134 Identities=17% Similarity=0.112 Sum_probs=87.4
Q ss_pred CCccccccccch--hhhhhhHH------hhhhhcc-CCCHHH-------HHHHHHHHHhccCCCcceeeccccccccccc
Q psy742 158 INSSSISTLKML--LWYSCLLC------LYIWETL-MLPLQV-------ITQAVSWVLDHQTPDGSFYETTWLVDRKVNS 221 (713)
Q Consensus 158 ~~l~sLi~~P~g--tWL~TAfV------F~qa~~~-~ID~~~-------I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g 221 (713)
+++++|+++||| +.. ++.. ..-.+.. .++++. |..++.+|+++|++||+|...+..
T Consensus 3 ~~l~~L~~~P~gc~Eq~-~~~~~p~~~~~~yl~~~~~~~~~~~~~~~~~l~~g~~~~~~~q~~dGsf~~w~~~------- 74 (292)
T cd02897 3 QNLDNLLRMPYGCGEQN-MVNFAPNIYVLDYLKATGQLTPEIESKALGFLRTGYQRQLTYKHSDGSYSAFGES------- 74 (292)
T ss_pred hhHHHHHhCCCCcHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhccCCCCCeecccCC-------
Confidence 468999999999 454 3322 1112222 355554 555566666799999999774310
Q ss_pred cCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhh---ccC-------------CCChHH
Q psy742 222 SLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRL---LKD-------------FGDPYE 285 (713)
Q Consensus 222 ~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~---~~~-------------~~~~Yt 285 (713)
. ..++.||||||+.+|.++++ ++..+ ..++++|++||.++-.. ..+ ..+.+.
T Consensus 75 ----~----~~~~~wlTa~v~~~L~~a~~---~~~v~-~~~i~ra~~wL~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~ 142 (292)
T cd02897 75 ----D----KSGSTWLTAFVLKSFAQARP---FIYID-ENVLQQALTWLSSHQKSNGCFREVGRVFHKAMQGGVDDEVAL 142 (292)
T ss_pred ----C----CCcchhhHHHHHHHHHHHhc---cCCCC-HHHHHHHHHHHHHhcCCCCCCCCCCcccChhhcCCCCCCcch
Confidence 0 13578999999999999874 22332 46899999999987431 000 012457
Q ss_pred HHHHHHHHHhcCCcc----HHHHHHHHHHh
Q psy742 286 VAIVAYALRLSKATI----AEAAFGILTQH 311 (713)
Q Consensus 286 lAl~aYALaLa~~~~----~~~al~~L~~~ 311 (713)
.|++.+||+.++.+. ...+++.|.+.
T Consensus 143 TA~vl~aL~~~g~~~~~~~i~~a~~yL~~~ 172 (292)
T cd02897 143 TAYVLIALLEAGLPSERPVVEKALSCLEAA 172 (292)
T ss_pred HHHHHHHHHhcCCccccHHHHHHHHHHHHh
Confidence 899999999998653 34666666543
No 16
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=98.72 E-value=3.9e-07 Score=99.42 Aligned_cols=192 Identities=22% Similarity=0.236 Sum_probs=119.0
Q ss_pred hhhhhhHH---hhhhhccCCCHHHHHHHHHHHHhcc--------------CCCcceeeccccccccccccCCCCCCCccc
Q psy742 170 LWYSCLLC---LYIWETLMLPLQVITQAVSWVLDHQ--------------TPDGSFYETTWLVDRKVNSSLNWPNDDVKF 232 (713)
Q Consensus 170 tWL~TAfV---F~qa~~~~ID~~~I~~ai~WL~~~Q--------------~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~ 232 (713)
+|. ||++ |..+..-.-....+.++++||.++| .++|+|.+.... + ..
T Consensus 25 ~~~-Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~----------~-----~~ 88 (348)
T cd02889 25 VWD-TALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTAN----------Q-----GY 88 (348)
T ss_pred hHH-HHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcC----------C-----CC
Confidence 788 9999 4444322224578999999999999 456665542100 0 01
Q ss_pred CcceehHHHHHHHHhcccccC-CCCCchhHHHHHHHHHHHHhhhh---ccCC-----------------------CChHH
Q psy742 233 RNISLTAHVLITLDTVKDLTG-GLGARVSLAQSKAIKWLERNLRL---LKDF-----------------------GDPYE 285 (713)
Q Consensus 233 ~~v~LTAyVliaL~ea~~l~~-g~~~~~~~~~~kA~~yLe~~~~~---~~~~-----------------------~~~Yt 285 (713)
.+...||||+.+|.+++...+ +.. .....+.+|++||.+.-.. ...+ .++..
T Consensus 89 ~~~~~Ta~~l~al~~~~~~~~~~~~-~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (348)
T cd02889 89 PDSDDTAEALKALLRLQKKPPDGKK-VSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVEC 167 (348)
T ss_pred CCCCChHHHHHHHHHhhccCcccch-hhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcch
Confidence 234589999999998876432 111 1346899999999986421 1000 12234
Q ss_pred HHHHHHHHHhcCCc----------cHHHHHHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhH
Q psy742 286 VAIVAYALRLSKAT----------IAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIET 355 (713)
Q Consensus 286 lAl~aYALaLa~~~----------~~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEt 355 (713)
-|.+..||..++.. ....+++.|.+....+++ |... + .....-+
T Consensus 168 Ta~~l~aL~~~~~~~~~~~~~~~~~i~~a~~~L~~~q~~dG~---w~~~---------------~--------~~~~~y~ 221 (348)
T cd02889 168 TGSVLEALGLFGKLYPEHRREIDPAIRRAVKYLEREQEPDGS---WYGR---------------W--------GVCFIYG 221 (348)
T ss_pred HHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHhCCCCCC---cccc---------------C--------CCcchHH
Confidence 56666666666531 123555556544333332 4210 0 0123456
Q ss_pred HHHHHHHHhhcCC---c-chhHHHHHHHhcccCCCCccch-----------------hhHHHHHHHHHHH
Q psy742 356 TAYALLVYVSRQE---L-LTDPIVKWLNSQRLTDGGWAST-----------------QDTAMAMKALIEY 404 (713)
Q Consensus 356 TAYALLa~l~~~~---~-~a~~Iv~WL~~Qrn~~GGF~ST-----------------QDTvvALqALa~Y 404 (713)
|++++.++...+. . ...+.++||.+.++.+|||..+ -.|+.||+||.++
T Consensus 222 ta~a~~aL~~~g~~~~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~~~~~~~~~~Ta~al~aL~~~ 291 (348)
T cd02889 222 TWFALEALAAAGEDENSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYAGGGRSTVVQTAWALLALMAA 291 (348)
T ss_pred HHHHHHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCcCCcccccccccccCCCCCcHHHHHHHHHHHHhc
Confidence 8999999987765 2 5678999999999999999642 3689999999764
No 17
>PLN03012 Camelliol C synthase
Probab=98.67 E-value=5.6e-07 Score=105.89 Aligned_cols=210 Identities=16% Similarity=0.166 Sum_probs=132.1
Q ss_pred CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccC-----CCCCCCcccCcceehHHHHHHHHhcccccCCCC-Cc
Q psy742 185 MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSL-----NWPNDDVKFRNISLTAHVLITLDTVKDLTGGLG-AR 258 (713)
Q Consensus 185 ~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~-----~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~-~~ 258 (713)
.++++.+.+|++||++.|+.||+|...-+--...|---+ .|.. .....-.-.||-++-||.--+++.+++. .+
T Consensus 509 ~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~-mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~ 587 (759)
T PLN03012 509 KMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADI-VIEHEYNECTSSAIQALILFKQLYPDHRTEE 587 (759)
T ss_pred cccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCe-ecCCCcccHHHHHHHHHHHHhhhCcccchhh
Confidence 466789999999999999999998432211001110000 0110 0112334579999999876554333321 12
Q ss_pred hhHHHHHHHHHHHHhhhhccC------CCChHHHHHHHHHHHhcCC-----ccHHHHHHHHHHhhhccCCceeecCCCCC
Q psy742 259 VSLAQSKAIKWLERNLRLLKD------FGDPYEVAIVAYALRLSKA-----TIAEAAFGILTQHARSEGGLTYWGKEPVP 327 (713)
Q Consensus 259 ~~~~~~kA~~yLe~~~~~~~~------~~~~YtlAl~aYALaLa~~-----~~~~~al~~L~~~a~~~~~~~~W~~~~~~ 327 (713)
+...+.+|++||++.-+.-.. ..-.|.-+.+.-||+.++. +....+.+-|.+.+..+|| |+..-..
T Consensus 588 i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGG---WGEs~~S 664 (759)
T PLN03012 588 INAFIKKAAEYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGG---WGESYLS 664 (759)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCC---cCCCCCC
Confidence 356899999999997532100 1146777777788887775 3346788888888777664 7653210
Q ss_pred CCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-----chhHHHHHHHhcccCCCCccchh----------
Q psy742 328 APPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-----LTDPIVKWLNSQRLTDGGWASTQ---------- 392 (713)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-----~a~~Iv~WL~~Qrn~~GGF~STQ---------- 392 (713)
+.+ +-|.+ ..+....++-||+||++|+..++. ...+.++||.+.|..+|+|.--.
T Consensus 665 -----c~~--~~y~~---~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~ 734 (759)
T PLN03012 665 -----CPK--KIYIA---QEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCL 734 (759)
T ss_pred -----CCC--ccccC---CCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceE
Confidence 000 01111 111246889999999999998864 24578999999889999996211
Q ss_pred ------hHHHHHHHHHHHHHhc
Q psy742 393 ------DTAMAMKALIEYTNRH 408 (713)
Q Consensus 393 ------DTvvALqALa~Ya~~~ 408 (713)
--++-|.||++|.+..
T Consensus 735 i~Y~~Yr~~FPl~ALg~Y~~~~ 756 (759)
T PLN03012 735 LHYAAYRNIFPLWALAEYRARV 756 (759)
T ss_pred EecCccchHHHHHHHHHHHHhc
Confidence 2356889999997653
No 18
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=98.55 E-value=1.2e-06 Score=94.06 Aligned_cols=191 Identities=21% Similarity=0.195 Sum_probs=119.2
Q ss_pred CCccccccccch--hhh-----hhhHH---hhhhhcc-CCCH-------HHHHHHHHHHHhccCCCcceeeccccccccc
Q psy742 158 INSSSISTLKML--LWY-----SCLLC---LYIWETL-MLPL-------QVITQAVSWVLDHQTPDGSFYETTWLVDRKV 219 (713)
Q Consensus 158 ~~l~sLi~~P~g--tWL-----~TAfV---F~qa~~~-~ID~-------~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m 219 (713)
+|+++|++|||| +.. |+-|| +...+.. ..++ +.|.+++..+++.|++||+|...+
T Consensus 3 ~~l~~L~~~P~GC~EQ~~~~~~p~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsf~~w~------- 75 (297)
T cd02896 3 EGLEKLIRLPTGCGEQTMIKLAPTVYALRYLDTTNQWEKLGPERRDEALKYIRQGYQRQLSYRKPDGSYAAWK------- 75 (297)
T ss_pred hhHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHhccCCCCCccCCC-------
Confidence 478999999999 333 02344 2222222 1121 558999999999999999996622
Q ss_pred cccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhh---ccCC----------------
Q psy742 220 NSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRL---LKDF---------------- 280 (713)
Q Consensus 220 ~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~---~~~~---------------- 280 (713)
+ ..++.||||||+.+|.++++.. .. ....+++|++||.++-.. ..+.
T Consensus 76 ------~----~~~s~wlTA~v~~~l~~a~~~~---~v-~~~~l~~a~~wL~~~Q~~dG~f~e~~~~~~~~m~gg~~~~~ 141 (297)
T cd02896 76 ------N----RPSSTWLTAFVVKVFSLARKYI---PV-DQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSE 141 (297)
T ss_pred ------C----CCcchhhHHHHHHHHHHHHHcC---CC-CHHHHHHHHHHHHhcCCCCCeeCCCCCccChhccCCccccC
Confidence 1 2356999999999999998632 22 246899999999997421 0000
Q ss_pred CChHHHHHHHHHHHhcCCcc----------HHHHHHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCc
Q psy742 281 GDPYEVAIVAYALRLSKATI----------AEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDA 350 (713)
Q Consensus 281 ~~~YtlAl~aYALaLa~~~~----------~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 350 (713)
.+.-.-|++.+||+.++... ...+++-|.+..... . ..
T Consensus 142 ~~~~lTA~vl~aL~~~~~~~~~~~~~~~~~i~rA~~yL~~~~~~~--------------------~------------~~ 189 (297)
T cd02896 142 GDVSLTAFVLIALQEARSICPPEVQNLDQSIRKAISYLENQLPNL--------------------Q------------RP 189 (297)
T ss_pred CCccchHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHhcccC--------------------C------------Ch
Confidence 13334688888888887531 234455554322100 0 01
Q ss_pred chhhHHHHHHHHHhhcCCcchhHHHHHHHhcccCCCCcc------------------chhhHHHHHHHHHHH
Q psy742 351 INIETTAYALLVYVSRQELLTDPIVKWLNSQRLTDGGWA------------------STQDTAMAMKALIEY 404 (713)
Q Consensus 351 ~~VEtTAYALLa~l~~~~~~a~~Iv~WL~~Qrn~~GGF~------------------STQDTvvALqALa~Y 404 (713)
...=.++||| ++. +...+....+||.+..+.+|||. +..-|++||.||.+.
T Consensus 190 Y~~Al~ayAL-al~--~~~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~vE~TAYALLall~~ 258 (297)
T cd02896 190 YALAITAYAL-ALA--DSPLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPVPGPSAITVETTAYALLALLKL 258 (297)
T ss_pred HHHHHHHHHH-HHc--CChhhHHHHHHHHHHhhhCCCcceeccCcCccCCCCCCchhhhHHHHHHHHHHHhc
Confidence 2233445552 332 32267788999999888888774 234588999998643
No 19
>PLN02993 lupeol synthase
Probab=98.52 E-value=2.7e-06 Score=100.46 Aligned_cols=211 Identities=18% Similarity=0.189 Sum_probs=133.2
Q ss_pred CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccC-----CCCCCCcccCcceehHHHHHHHHhcccccCCC-CCc
Q psy742 185 MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSL-----NWPNDDVKFRNISLTAHVLITLDTVKDLTGGL-GAR 258 (713)
Q Consensus 185 ~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~-----~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~-~~~ 258 (713)
.++++.|.+|++||++.|+.||+|...-+--...|---+ .|+ -.....-+..|+-|+-+|..-+++.++. ..+
T Consensus 509 ~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~-~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~e 587 (763)
T PLN02993 509 KIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFAN-TMVEREYVECTSAVIQALVLFKQLYPDHRTKE 587 (763)
T ss_pred cchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcC-cccCCCCcCHHHHHHHHHHHhcccCcchhhhh
Confidence 356688999999999999999998653311000110000 011 0012344678999999997654322222 122
Q ss_pred hhHHHHHHHHHHHHhhhhcc----C--CCChHHHHHHHHHHHhcCCc-----cHHHHHHHHHHhhhccCCceeecCCCCC
Q psy742 259 VSLAQSKAIKWLERNLRLLK----D--FGDPYEVAIVAYALRLSKAT-----IAEAAFGILTQHARSEGGLTYWGKEPVP 327 (713)
Q Consensus 259 ~~~~~~kA~~yLe~~~~~~~----~--~~~~YtlAl~aYALaLa~~~-----~~~~al~~L~~~a~~~~~~~~W~~~~~~ 327 (713)
+..+++||++||++.-..-. . ..-.|.-+.+.-||+.+|.+ ....+.+-|.+.+..+|| |+..-..
T Consensus 588 i~~~i~rAv~yL~~~Q~~DGSW~G~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DGG---WGEs~~S 664 (763)
T PLN02993 588 IIKSIEKAVQFIESKQTPDGSWYGNWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDGG---WGESYLS 664 (763)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCCC---cCcCcCc
Confidence 34689999999999643210 1 12577888888888888753 346788888877766653 7643200
Q ss_pred CCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-----chhHHHHHHHhcccCCCCccch-----------
Q psy742 328 APPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-----LTDPIVKWLNSQRLTDGGWAST----------- 391 (713)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-----~a~~Iv~WL~~Qrn~~GGF~ST----------- 391 (713)
+++. -|.+ ..+....+.-||+|||+|+..+.. ...+.++||.+.|..+|+|.--
T Consensus 665 -----~~~~--~y~~---~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~~~G~F~~~~~ 734 (763)
T PLN02993 665 -----CPEQ--RYIP---LEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNTCM 734 (763)
T ss_pred -----CCCc--cccc---CCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcceeceECccce
Confidence 0000 1111 011246788899999999998753 2457899999999999998731
Q ss_pred -----hhHHHHHHHHHHHHHhcc
Q psy742 392 -----QDTAMAMKALIEYTNRHR 409 (713)
Q Consensus 392 -----QDTvvALqALa~Ya~~~~ 409 (713)
---++-|.||++|.....
T Consensus 735 i~Y~~Yr~~FPl~ALg~Y~~~~~ 757 (763)
T PLN02993 735 LHYATYRNTFPLWALAEYRKAAF 757 (763)
T ss_pred eccCccchHHHHHHHHHHHHhhh
Confidence 123568999999987654
No 20
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=98.43 E-value=3.6e-06 Score=88.98 Aligned_cols=133 Identities=19% Similarity=0.133 Sum_probs=89.4
Q ss_pred CCccccccccch--hhhhhhHH-----hhh-hhcc-CCC-------HHHHHHHHHHHHhccCCCcceeeccccccccccc
Q psy742 158 INSSSISTLKML--LWYSCLLC-----LYI-WETL-MLP-------LQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNS 221 (713)
Q Consensus 158 ~~l~sLi~~P~g--tWL~TAfV-----F~q-a~~~-~ID-------~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g 221 (713)
+++++|+++||| +.+ ++.. +.+ .+.. ..+ .+.|.+++.+|.+.|++||+|.. |.+
T Consensus 3 ~~l~~L~~yPygC~EQ~-~s~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~Q~~dGgf~~--------w~~ 73 (282)
T cd02891 3 GNLDYLLRYPYGCGEQT-MSRAAPNLYVLKYLDATGQLTPEIREKALEYIRKGYQRLLTYQRSDGSFSA--------WGN 73 (282)
T ss_pred chHHHHHcCCCCcHHHH-HHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHhhcCCCCCccc--------cCC
Confidence 368899999999 344 4333 111 1111 222 26699999999999999999977 321
Q ss_pred cCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhh---ccC-------------CCChHH
Q psy742 222 SLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRL---LKD-------------FGDPYE 285 (713)
Q Consensus 222 ~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~---~~~-------------~~~~Yt 285 (713)
. ..++.|+||||+.+|.++++.. .. ....+.||++||.++... ... ..+.+.
T Consensus 74 ----~----~~~~~~~Ta~~~~~L~~a~~~~---~v-~~~~i~ra~~~L~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~ 141 (282)
T cd02891 74 ----S----DSGSTWLTAYVVKFLSQARKYI---DV-DENVLARALGWLVPQQKEDGSFRELGPVIHREMKGGVDDSVSL 141 (282)
T ss_pred ----C----CCCchHHHHHHHHHHHHHHHcC---CC-CHHHHHHHHHHHHhccCCCCCcCCCCCccCHhhcCCcCCCcch
Confidence 1 1457899999999999998632 22 246899999999987521 000 112346
Q ss_pred HHHHHHHHHhcCCc---cHHHHHHHHHHh
Q psy742 286 VAIVAYALRLSKAT---IAEAAFGILTQH 311 (713)
Q Consensus 286 lAl~aYALaLa~~~---~~~~al~~L~~~ 311 (713)
.|++.|+|+.++.. ....+++.|.+.
T Consensus 142 tA~al~~L~~~g~~~~~~~~~a~~~L~~~ 170 (282)
T cd02891 142 TAYVLIALAEAGKACDASIEKALAYLETQ 170 (282)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHh
Confidence 79999999999874 344667767643
No 21
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=98.22 E-value=4.3e-06 Score=75.79 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=29.6
Q ss_pred cchhhHHHHHHHHHhhcCCc----chhHHHHHHHhcccCCCCcc
Q psy742 350 AINIETTAYALLVYVSRQEL----LTDPIVKWLNSQRLTDGGWA 389 (713)
Q Consensus 350 s~~VEtTAYALLa~l~~~~~----~a~~Iv~WL~~Qrn~~GGF~ 389 (713)
..++.+|+++|.++-..+.. ...+.++||.++|+.+|||.
T Consensus 69 ~~~~~~t~~~l~~l~~~~~~~~~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 69 PPDVYTTYVALAALELLGRPDDEEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp -BSHHHHHHHHHHHHHHT-GGCHTTHCCHHHHHHHTB-TTSSB-
T ss_pred CccHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhcCCCCCCC
Confidence 45688888888887665543 46789999999999999996
No 22
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=98.02 E-value=0.0001 Score=87.11 Aligned_cols=166 Identities=18% Similarity=0.173 Sum_probs=105.4
Q ss_pred CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHH
Q psy742 185 MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQS 264 (713)
Q Consensus 185 ~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~ 264 (713)
.+-...+.++++||..+|.++|++... ...++++++||...+ + . ....++
T Consensus 232 ~lr~~a~~~~~~~i~~~q~~~g~~~~~-----------------------~~~~~l~~lal~~~g-----~-~-~~~~~~ 281 (634)
T cd02892 232 PLRRKALRKAYEWILYRDENTGYLGII-----------------------PPPKANNMLALWVLG-----Y-P-DSPAFK 281 (634)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceeee-----------------------ehHHHHHHHHHHHcC-----C-C-CCHHHH
Confidence 455678999999999999999987540 124699999996543 2 1 235789
Q ss_pred HHHHHHHHhh----hh---cc-CCCChHHHHHHHHHHHhcCCc-c----HHHHHHHHHHhhh-ccCCceeecCCCCCCCC
Q psy742 265 KAIKWLERNL----RL---LK-DFGDPYEVAIVAYALRLSKAT-I----AEAAFGILTQHAR-SEGGLTYWGKEPVPAPP 330 (713)
Q Consensus 265 kA~~yLe~~~----~~---~~-~~~~~YtlAl~aYALaLa~~~-~----~~~al~~L~~~a~-~~~~~~~W~~~~~~~~~ 330 (713)
++++++++-+ +. .. .....|..|++..||.-++-+ + ...+++-|.+.+. ...| .|.......+
T Consensus 282 ~~l~~l~~~~~~~~~g~~~~~~~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~g--dw~~~~~~~~- 358 (634)
T cd02892 282 RHLERIDDFLWLGPEGMKMCQTNGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILDNPG--DWKVKYRHLR- 358 (634)
T ss_pred HHHHHHHhcEEEecCCcEEEcCCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCC--chhhhCCCCC-
Confidence 9999998865 11 11 112579999999999877743 2 3467777776654 2211 3433211000
Q ss_pred CCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc----------chhHHHHHHHhcccCCCCccc
Q psy742 331 SKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL----------LTDPIVKWLNSQRLTDGGWAS 390 (713)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~----------~a~~Iv~WL~~Qrn~~GGF~S 390 (713)
...+.|... ...-.++..||++|.+++..+.. .....++||.+.||.+|||.+
T Consensus 359 ----~GGW~fs~~---~~~~pd~d~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~ 421 (634)
T cd02892 359 ----KGGWAFSTA---NQGYPDSDDTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAA 421 (634)
T ss_pred ----CCCCCCCCC---CCCCCCcCchHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEee
Confidence 011111100 00113567899999999876531 345789999999999999973
No 23
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=97.97 E-value=0.00019 Score=84.62 Aligned_cols=200 Identities=15% Similarity=0.073 Sum_probs=111.4
Q ss_pred hhhhhhHH---hhhhhcc-CCCHHHHHHHHHHHHhccC--CCcceeeccccccccccccCCCCCCCc----ccCcceehH
Q psy742 170 LWYSCLLC---LYIWETL-MLPLQVITQAVSWVLDHQT--PDGSFYETTWLVDRKVNSSLNWPNDDV----KFRNISLTA 239 (713)
Q Consensus 170 tWL~TAfV---F~qa~~~-~ID~~~I~~ai~WL~~~Q~--~dG~F~e~g~v~h~~m~g~~~Gg~~~~----~~~~v~LTA 239 (713)
.|= |||+ +.++... .-....|.+|.+||.++|. ..|.+.. ...|.. +||.... ...+.--||
T Consensus 306 ~WD-Tala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~~~gd~~~--~~~~~~-----~GGW~f~~~~~~~pdsD~Ta 377 (634)
T TIGR03463 306 EWD-TAFAVQALAATPETAGRHRRMLERAARFLEANQMLEDTAEPQR--FFRDPA-----KGGWCFSDGDHGWPVSDCTA 377 (634)
T ss_pred chh-HHHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCcCCCCchh--cCCCCC-----CCccccccCCCCCCccccHH
Confidence 788 9999 4443222 1122679999999999994 2233321 001111 1111100 112455799
Q ss_pred HHHHHHHhcccccCCC-CCchhHHHHHHHHHHHHhhhh---cc-------------------------CCCChHHHHHHH
Q psy742 240 HVLITLDTVKDLTGGL-GARVSLAQSKAIKWLERNLRL---LK-------------------------DFGDPYEVAIVA 290 (713)
Q Consensus 240 yVliaL~ea~~l~~g~-~~~~~~~~~kA~~yLe~~~~~---~~-------------------------~~~~~YtlAl~a 290 (713)
.++.||..+....... .......+.+|++||.+.-+. .. +...++.-|-+.
T Consensus 378 ~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l 457 (634)
T TIGR03463 378 EALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCL 457 (634)
T ss_pred HHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHH
Confidence 9999997654311100 001135889999999876431 00 001222333333
Q ss_pred HHHHhcC--Ccc---------HHHHHHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHH
Q psy742 291 YALRLSK--ATI---------AEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYA 359 (713)
Q Consensus 291 YALaLa~--~~~---------~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYA 359 (713)
-||+..+ .+. ...+++-|.+....+|+ |.. .|. ....-.|++|
T Consensus 458 ~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~Q~~dGs---W~g---------------~Wg--------~~~~Y~T~~a 511 (634)
T TIGR03463 458 QALAAWRKHHPHVPDGRITRAISRGVRFLRSRQREDGS---FPG---------------SWG--------VCFTYGTFHG 511 (634)
T ss_pred HHHHHHhhcCcchhhhHHHHHHHHHHHHHHHhcCCCCC---ccc---------------cCC--------CCCcHHHHHH
Confidence 3444433 221 23556666655444442 211 010 0112258999
Q ss_pred HHHHhhcCCc----chhHHHHHHHhcccCCCCccc-----------------hhhHHHHHHHHHH
Q psy742 360 LLVYVSRQEL----LTDPIVKWLNSQRLTDGGWAS-----------------TQDTAMAMKALIE 403 (713)
Q Consensus 360 LLa~l~~~~~----~a~~Iv~WL~~Qrn~~GGF~S-----------------TQDTvvALqALa~ 403 (713)
|+++...+.. ...+.++||.+.||.+|||+. +-.|++||.||..
T Consensus 512 l~aL~~~G~~~~~~~i~rA~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~ 576 (634)
T TIGR03463 512 VMGLRAAGASPDDMALQRAAAWLRSYQRADGGWGEVYESCLQARYVEGKQSQAVMTSWALLALAE 576 (634)
T ss_pred HHHHHHcCCCcCcHHHHHHHHHHHHccCCCCCccCccCccccccccCCCCCcHHHHHHHHHHHHH
Confidence 9999887652 566899999999999999952 2469999999975
No 24
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=97.92 E-value=0.00042 Score=81.74 Aligned_cols=196 Identities=24% Similarity=0.314 Sum_probs=117.3
Q ss_pred hhhhhhHH---hhhhhccCCCHHHHHHHHHHHHhccCC-CcceeeccccccccccccCCCCCCCc----ccCcceehHHH
Q psy742 170 LWYSCLLC---LYIWETLMLPLQVITQAVSWVLDHQTP-DGSFYETTWLVDRKVNSSLNWPNDDV----KFRNISLTAHV 241 (713)
Q Consensus 170 tWL~TAfV---F~qa~~~~ID~~~I~~ai~WL~~~Q~~-dG~F~e~g~v~h~~m~g~~~Gg~~~~----~~~~v~LTAyV 241 (713)
.|= |||. |..+. +.-|...|.++.+||.++|-. .|.|...- .| .+ +||...+ ...+++-||.+
T Consensus 316 vWD-Ta~ai~AL~~ag-~~~~~p~l~kA~~~L~~~Qi~~~~~w~~~~--~~--~~---~GGW~f~~~~~~~pd~ddTa~~ 386 (635)
T TIGR01507 316 VWD-TALAVLALREAG-LPADHDALVKAGEWLLDKQITVPGDWAVKR--PN--LE---PGGWAFQFDNVYYPDVDDTAVV 386 (635)
T ss_pred HHH-HHHHHHHHHHcC-CCCCCHHHHHHHHHHHhhcccCCCCccccC--CC--CC---CCccCCCCCCCCCCCchhHHHH
Confidence 898 9999 44443 423456899999999998854 33322110 11 11 1221111 12467889999
Q ss_pred HHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhh---ccC--------------CCC-------hH--HHHHHHHHHHh
Q psy742 242 LITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRL---LKD--------------FGD-------PY--EVAIVAYALRL 295 (713)
Q Consensus 242 liaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~---~~~--------------~~~-------~Y--tlAl~aYALaL 295 (713)
+.||.+.+ ... ......++++|++||.+.-.. ... ++| ++ .-|.+.-||..
T Consensus 387 L~AL~~~~-~~~--~~~~~~~i~ra~~wLl~~Qn~dGgw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~ 463 (635)
T TIGR01507 387 VWALNGLR-LPD--ERRRRDAMTKAFRWIAGMQSSNGGWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGS 463 (635)
T ss_pred HHHHHHcC-CCc--cccchHHHHHHHHHHHHhcCCCCCEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHH
Confidence 99998864 211 112346899999999975321 000 000 11 13555555655
Q ss_pred cCCc----cHHHHHHHHHHhhhccCC-ceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-
Q psy742 296 SKAT----IAEAAFGILTQHARSEGG-LTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL- 369 (713)
Q Consensus 296 a~~~----~~~~al~~L~~~a~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~- 369 (713)
.+.. ....+++-|.+.+..+|+ ..-|. ...+-.|+.||+++...+..
T Consensus 464 ~g~~~~~~~i~rav~~L~~~Q~~dG~W~g~wg---------------------------~~~~Y~T~~al~aL~~~g~~~ 516 (635)
T TIGR01507 464 FGYDDAWPVIERAVEYLKREQEPDGSWFGRWG---------------------------VNYLYGTGAVLSALKAVGIDT 516 (635)
T ss_pred hCCCchhHHHHHHHHHHHHccCCCCCCccCCC---------------------------CccccHHHHHHHHHHHcCCCc
Confidence 5432 235677777766554442 01121 11234688899888776542
Q ss_pred ---chhHHHHHHHhcccCCCCccch-----------------hhHHHHHHHHHHH
Q psy742 370 ---LTDPIVKWLNSQRLTDGGWAST-----------------QDTAMAMKALIEY 404 (713)
Q Consensus 370 ---~a~~Iv~WL~~Qrn~~GGF~ST-----------------QDTvvALqALa~Y 404 (713)
...+.++||.+.||.+|||+.+ --|++||.||...
T Consensus 517 ~~~~i~rAv~wL~~~Q~~DGGWge~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~a 571 (635)
T TIGR01507 517 REPYIQKALAWLESHQNPDGGWGEDCRSYEDPAYAGKGASTASQTAWALIALIAA 571 (635)
T ss_pred ccHHHHHHHHHHHHhcCCCCCCCCCCcccccccccCCCCCcHHHHHHHHHHHHHh
Confidence 5568999999999999999733 1399999999753
No 25
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=97.77 E-value=0.0007 Score=72.08 Aligned_cols=189 Identities=20% Similarity=0.228 Sum_probs=118.1
Q ss_pred hhhhhhHHhhhhhcc--CCCHHHHHHHHHHHHhcc-CCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHH
Q psy742 170 LWYSCLLCLYIWETL--MLPLQVITQAVSWVLDHQ-TPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLD 246 (713)
Q Consensus 170 tWL~TAfVF~qa~~~--~ID~~~I~~ai~WL~~~Q-~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ 246 (713)
.|. |-|++.-..-. .++...++++++||.+.| ++||+|.... + ...++..|.+++.+|.
T Consensus 27 ~~~-~y~~l~~l~ll~~~~~~~~~~~~i~~l~~~q~~~~Ggf~~~~------------~-----~~~~~~~T~~al~~l~ 88 (286)
T cd02890 27 LWL-LYWILSSLDLLGEDLDDENKDEIIDFIYSCQVNEDGGFGGGP------------G-----QDPHLASTYAAVLSLA 88 (286)
T ss_pred HHH-HHHHHHHHHHhCCCcchHHHHHHHHHHHHhhcCCCCCCCCCC------------C-----CCccHHHHHHHHHHHH
Confidence 677 76663333333 477788999999999999 9999997731 1 2346788999999997
Q ss_pred hcccccCCCCCchhHHHHHHHHHHHHhhhhccCC-----C--ChHHHHHHHHHHHhcCC---ccHHHHHHHHHHhhhccC
Q psy742 247 TVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDF-----G--DPYEVAIVAYALRLSKA---TIAEAAFGILTQHARSEG 316 (713)
Q Consensus 247 ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~-----~--~~YtlAl~aYALaLa~~---~~~~~al~~L~~~a~~~~ 316 (713)
..++- .+. ...+.++++||.+....-..+ + +.+..-.+.-+|.+.+. ...+.+.+.|.+....+|
T Consensus 89 llg~~--~~~---~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~Q~~dG 163 (286)
T cd02890 89 ILGDD--ALS---RIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNILTDIDKEKLIDYILSCQNYDG 163 (286)
T ss_pred HcCcc--ccc---hhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHhCCCCC
Confidence 66530 011 124578999999875421111 1 22222222233444443 335677788877765555
Q ss_pred CceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc---chhHHHHHHHhcccCCC-Cccc--
Q psy742 317 GLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL---LTDPIVKWLNSQRLTDG-GWAS-- 390 (713)
Q Consensus 317 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~---~a~~Iv~WL~~Qrn~~G-GF~S-- 390 (713)
+ |...+ +...+.-.|++|+.++...+.. ...++++||.+.++..| ||.-
T Consensus 164 G---f~~~~----------------------~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~ggGf~g~~ 218 (286)
T cd02890 164 G---FGGVP----------------------GAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASGGGFNGRP 218 (286)
T ss_pred C---cCCCC----------------------CCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCCCCcCCCC
Confidence 4 33211 1123556688888888777653 78899999999888776 8843
Q ss_pred --hhhHHHHHHHHHHHHH
Q psy742 391 --TQDTAMAMKALIEYTN 406 (713)
Q Consensus 391 --TQDTvvALqALa~Ya~ 406 (713)
.-|+..+--+++.+..
T Consensus 219 ~~~~d~~yt~~~~~~l~~ 236 (286)
T cd02890 219 NKLVDTCYSFWVGASLKI 236 (286)
T ss_pred CCCCccchhhHHHHHHHH
Confidence 3476655555555544
No 26
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=97.58 E-value=0.0023 Score=75.48 Aligned_cols=197 Identities=20% Similarity=0.244 Sum_probs=114.3
Q ss_pred hhhhhhHH---hhhhhcc--CCCHHHHHHHHHHHHhccCCC---cceeeccccccccccccCCCCCCCc----ccCccee
Q psy742 170 LWYSCLLC---LYIWETL--MLPLQVITQAVSWVLDHQTPD---GSFYETTWLVDRKVNSSLNWPNDDV----KFRNISL 237 (713)
Q Consensus 170 tWL~TAfV---F~qa~~~--~ID~~~I~~ai~WL~~~Q~~d---G~F~e~g~v~h~~m~g~~~Gg~~~~----~~~~v~L 237 (713)
+|= |||+ |.++..+ .-+...|.++++||.++|..+ |.+.... .+.+ +||.... -..++.=
T Consensus 296 vWD-Talai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~--~~~~-----pGgW~fs~~~~~~PdvdD 367 (621)
T TIGR01787 296 VWD-TAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYR--HNLK-----PGGWAFSFLNCGYPDVDD 367 (621)
T ss_pred HHH-HHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhC--CCCC-----CCcccCccCCCCCCCchh
Confidence 999 9999 6555432 223468999999999999876 5544311 0110 1211000 1124566
Q ss_pred hHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhh---ccCCC---C--------h--------------HHHHHH
Q psy742 238 TAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRL---LKDFG---D--------P--------------YEVAIV 289 (713)
Q Consensus 238 TAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~---~~~~~---~--------~--------------YtlAl~ 289 (713)
||.+++++..... ..... ....+.+|++||.+.-+. ...+. + | -.-+.+
T Consensus 368 ta~~~la~~l~~~--~~~~~-~~~~l~~a~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~ 444 (621)
T TIGR01787 368 TAVVALKAVLLLQ--EDEHV-KRDRLRDAVNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARV 444 (621)
T ss_pred HHHHHHHHHHhhc--Ccccc-cHHHHHHHHHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHH
Confidence 8898877643321 11111 236789999999986432 11000 0 1 135555
Q ss_pred HHHHHhcCC--c----cHHHHHHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHH
Q psy742 290 AYALRLSKA--T----IAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVY 363 (713)
Q Consensus 290 aYALaLa~~--~----~~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~ 363 (713)
.-||..++. . ..+.+++-|.+....+|+ |... |. ..-+=.|+++|.++
T Consensus 445 l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q~~DGs---w~g~---------------wg--------~~y~YgT~~al~aL 498 (621)
T TIGR01787 445 IQALGAFGHRADEIRNVLERALEYLRREQRADGS---WFGR---------------WG--------VNYTYGTGFVLSAL 498 (621)
T ss_pred HHHHHHhcCccHhHHHHHHHHHHHHHHhcCCCCC---Cccc---------------CC--------CCCchhHHHHHHHH
Confidence 566666653 1 234667777766544442 3210 00 00112377999888
Q ss_pred hhcCCc-----chhHHHHHHHhcccCCCCccc-----------------hhhHHHHHHHHHH
Q psy742 364 VSRQEL-----LTDPIVKWLNSQRLTDGGWAS-----------------TQDTAMAMKALIE 403 (713)
Q Consensus 364 l~~~~~-----~a~~Iv~WL~~Qrn~~GGF~S-----------------TQDTvvALqALa~ 403 (713)
...++. ...+.++||.+.||.+|||+- .--|++||.||..
T Consensus 499 ~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~ 560 (621)
T TIGR01787 499 AAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCFSYEDPSYVGSGGSTPSQTGWALMALIA 560 (621)
T ss_pred HHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 876653 356899999999999999962 1248999999964
No 27
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=97.45 E-value=0.0029 Score=67.30 Aligned_cols=183 Identities=17% Similarity=0.131 Sum_probs=104.5
Q ss_pred hhhhhhHH---hhhhhccCCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHH
Q psy742 170 LWYSCLLC---LYIWETLMLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLD 246 (713)
Q Consensus 170 tWL~TAfV---F~qa~~~~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ 246 (713)
.+. |.++ +.....-..++....++++||.+.|++||+|.... + .+.++..|-+++.+|.
T Consensus 77 ~~~-T~~al~~l~llg~~~~~~~~~~~~~~~l~~~q~~dGgf~~~~------------~-----~~~d~~~ty~al~~l~ 138 (286)
T cd02890 77 LAS-TYAAVLSLAILGDDALSRIDREKIYKFLSSLQNPDGSFRGDL------------G-----GEVDTRFVYCALSILS 138 (286)
T ss_pred HHH-HHHHHHHHHHcCccccchhhHHHHHHHHHHhcCCCCCcccCC------------C-----CCchHHHHHHHHHHHH
Confidence 666 7777 33333300233346789999999999999997632 1 1245666766777775
Q ss_pred hcccccCCCCCchhHHHHHHHHHHHHhhhhccCC-------CChHHHHHHHHHHHhcCCc---cHHHHHHHHHHhhhccC
Q psy742 247 TVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDF-------GDPYEVAIVAYALRLSKAT---IAEAAFGILTQHARSEG 316 (713)
Q Consensus 247 ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~-------~~~YtlAl~aYALaLa~~~---~~~~al~~L~~~a~~~~ 316 (713)
-.+.. . ...++++++||.+.-..-..+ .+.-.-+.+.-+|++.+.. +.+.+.+-|.++....+
T Consensus 139 ll~~~----~---~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~sL~~l~~~~~~~~~~~~~~L~~~q~~~g 211 (286)
T cd02890 139 LLNIL----T---DIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVASLALLGRLDLIDKERLLRWLVERQLASG 211 (286)
T ss_pred HhCCc----h---hhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHHHHHcCCCcccCHHHHHHHHHHhCCCCC
Confidence 54421 1 245789999999853210000 0211223333356666644 35677777777655444
Q ss_pred -CceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHH--HHHHHHhhcCCc-chhHHHHHHH-hcccCCCCcc--
Q psy742 317 -GLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTA--YALLVYVSRQEL-LTDPIVKWLN-SQRLTDGGWA-- 389 (713)
Q Consensus 317 -~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTA--YALLa~l~~~~~-~a~~Iv~WL~-~Qrn~~GGF~-- 389 (713)
|...+... ..|+.-|= ++.|.++..... ....+.+||. .|++..|||.
T Consensus 212 gGf~g~~~~-------------------------~~d~~yt~~~~~~l~~l~~~~~~~~~~l~~~l~~~~q~~~Ggf~~~ 266 (286)
T cd02890 212 GGFNGRPNK-------------------------LVDTCYSFWVGASLKILGRLHLIDQEKLREYILSCQQSEVGGFSDK 266 (286)
T ss_pred CCcCCCCCC-------------------------CCccchhhHHHHHHHHcccccccCHHHHHHHHHhhcCCCCCCcCCC
Confidence 33322211 12222222 344444433334 7889999999 7888999994
Q ss_pred --chhh---HHHHHHHHH
Q psy742 390 --STQD---TAMAMKALI 402 (713)
Q Consensus 390 --STQD---TvvALqALa 402 (713)
.--| |.+||-+|+
T Consensus 267 ~~~~~d~~~T~~~l~~ls 284 (286)
T cd02890 267 PGKPPDLYHTYYGLSGLS 284 (286)
T ss_pred CCCCCCchhHHHHHHHHH
Confidence 2233 777777775
No 28
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=97.33 E-value=0.0015 Score=68.29 Aligned_cols=62 Identities=24% Similarity=0.241 Sum_probs=46.8
Q ss_pred HHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHH
Q psy742 193 QAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLER 272 (713)
Q Consensus 193 ~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~ 272 (713)
++...++++|++||+|.-.+ +. ..++.||||||+-.|.+++++ +.. ....+.++++||.+
T Consensus 1 ~GYqr~L~y~~~DGsfs~f~------------~~----~~~s~WLTAfv~k~f~~a~~~---i~v-d~~~i~~a~~wL~~ 60 (246)
T PF07678_consen 1 QGYQRQLSYRRSDGSFSAFS------------SD----SPSSTWLTAFVVKVFSQAKKY---IFV-DENVICRAVKWLIS 60 (246)
T ss_dssp HHHHHHHTTB-TTSSBBSST------------TT----SSBBHHHHHHHHHHHHHHTTT---S-C-EHHHHHHHHHHHHH
T ss_pred CchHHHhcCCCCCCCeeccc------------cC----CcccHHHHHHHHHHHHHHHHh---hcC-CHHHHHHHHHHHHH
Confidence 35678899999999998730 00 245799999999999999874 222 24789999999999
Q ss_pred hh
Q psy742 273 NL 274 (713)
Q Consensus 273 ~~ 274 (713)
+-
T Consensus 61 ~Q 62 (246)
T PF07678_consen 61 QQ 62 (246)
T ss_dssp HB
T ss_pred hh
Confidence 85
No 29
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=97.25 E-value=0.009 Score=64.27 Aligned_cols=190 Identities=16% Similarity=0.162 Sum_probs=106.7
Q ss_pred hhhhhhHHhhhhhcc--CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHh
Q psy742 170 LWYSCLLCLYIWETL--MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247 (713)
Q Consensus 170 tWL~TAfVF~qa~~~--~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~e 247 (713)
.|+ +-|.+.-..-. .+++...++.++||.+.|.+||+|.... + ...++..|=+++.+|..
T Consensus 27 ~~~-~y~~l~~l~lL~~~~~~~~~~~~i~~i~~~q~~~GgF~~~~------------~-----~~~h~~~Ty~A~~~L~l 88 (299)
T cd02893 27 PWL-LYWILHSLELLGEELDQSYADDVISFLRRCQNPSGGFGGGP------------G-----QLPHLATTYAAVNALAI 88 (299)
T ss_pred HHH-HHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCCCCCCCC------------C-----CCccHHHHHHHHHHHHH
Confidence 788 77773222222 3566678899999999999999997721 1 23456666666666644
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhhhhc-----cCCC-----ChHHHHHHHHHHHhcCCccHHHHHHHHHHhhhccCC
Q psy742 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLL-----KDFG-----DPYEVAIVAYALRLSKATIAEAAFGILTQHARSEGG 317 (713)
Q Consensus 248 a~~l~~g~~~~~~~~~~kA~~yLe~~~~~~-----~~~~-----~~YtlAl~aYALaLa~~~~~~~al~~L~~~a~~~~~ 317 (713)
.++.+ -.. .....++++|+.+.-..- ...+ ..|...-+++-|.+-.....+.+.+-|.+....+||
T Consensus 89 l~~~~-~~~---~id~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~~~~~~~~~~~~l~~cQ~~dGG 164 (299)
T cd02893 89 IGTEE-AYD---VIDREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNILTDELFEGVAEYILSCQTYEGG 164 (299)
T ss_pred hCCch-hhh---HhhHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCCchhhHHHHHHHHHHcCCCCCC
Confidence 33200 011 123456888888754210 0011 123222222333332222345677777776665665
Q ss_pred ceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCC--c-chhHHHHHHHhcccC-CCCccch--
Q psy742 318 LTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQE--L-LTDPIVKWLNSQRLT-DGGWAST-- 391 (713)
Q Consensus 318 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~--~-~a~~Iv~WL~~Qrn~-~GGF~ST-- 391 (713)
..+... .-.+.-.|.+|+-++-..+. . ....+++||.+.+.. .|||.-.
T Consensus 165 F~~~p~-------------------------~e~h~~yTfcavasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~ 219 (299)
T cd02893 165 FGGVPG-------------------------NEAHGGYTFCALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTN 219 (299)
T ss_pred cCCCCC-------------------------CCCCccHHHHHHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCC
Confidence 543211 11234456666666555554 3 788999999887766 8999744
Q ss_pred --hhHHHHHHHHHHHHH
Q psy742 392 --QDTAMAMKALIEYTN 406 (713)
Q Consensus 392 --QDTvvALqALa~Ya~ 406 (713)
-||..+--.++.++.
T Consensus 220 k~~D~cys~w~~a~l~l 236 (299)
T cd02893 220 KLVDGCYSFWVGGSLPI 236 (299)
T ss_pred CCCccHHHHHHHHHHHH
Confidence 387665555555444
No 30
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=97.20 E-value=0.0087 Score=63.93 Aligned_cols=173 Identities=18% Similarity=0.216 Sum_probs=96.7
Q ss_pred hhhhhcc-CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcc--eehHHHHHHHHhcccccCC
Q psy742 178 LYIWETL-MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNI--SLTAHVLITLDTVKDLTGG 254 (713)
Q Consensus 178 F~qa~~~-~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v--~LTAyVliaL~ea~~l~~g 254 (713)
+.....+ .||+ ..++.++||.+.|++||+|.... + .+.++ +-.|-...+|+ ++. .
T Consensus 89 L~ll~~~~~i~~-~~~~~~~~i~~~q~~dGgf~~~~------------~-----~e~d~~~ty~a~~~l~ll--~~~-~- 146 (287)
T cd02894 89 LALYDLLNKIDE-NKEKIAKFIKGLQNEDGSFSGDK------------W-----GEVDTRFSYCAVLCLTLL--GKL-D- 146 (287)
T ss_pred HHHhhhhhhccH-HHHHHHHHHHHHcCCCCCeecCC------------C-----CCchHHHHHHHHHHHHHh--CCc-c-
Confidence 4444456 6775 67899999999999999997731 1 12334 33444444443 211 1
Q ss_pred CCCchhHHHHHHHHHHHHhhhhccCC-----C--ChHHHHHHHHHHHhcCCc---cHHHHHHHHHHhhhccCCceeecCC
Q psy742 255 LGARVSLAQSKAIKWLERNLRLLKDF-----G--DPYEVAIVAYALRLSKAT---IAEAAFGILTQHARSEGGLTYWGKE 324 (713)
Q Consensus 255 ~~~~~~~~~~kA~~yLe~~~~~~~~~-----~--~~YtlAl~aYALaLa~~~---~~~~al~~L~~~a~~~~~~~~W~~~ 324 (713)
...++++++||.+.-..-..+ + +.-.-..+.-+|++.+.. +.+.+.+-|.++...+||.......
T Consensus 147 -----~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k 221 (287)
T cd02894 147 -----LIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEK 221 (287)
T ss_pred -----hhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCC
Confidence 124699999999764210000 1 111112223346666644 3567777777766655554221110
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCCCcchhhHH--HHHHHHHhhcCCc-chhHHHHHHHhcc-cCCCCccc----hhh---
Q psy742 325 PVPAPPSKIENQKPFLLPRLPYKYDAINIETT--AYALLVYVSRQEL-LTDPIVKWLNSQR-LTDGGWAS----TQD--- 393 (713)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtT--AYALLa~l~~~~~-~a~~Iv~WL~~Qr-n~~GGF~S----TQD--- 393 (713)
..|+--| ++|-|.++..... ....+.+||.+.+ ...|||.- .-|
T Consensus 222 -------------------------~~D~~ysf~~~a~l~~l~~~~~~~~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~h 276 (287)
T cd02894 222 -------------------------LPDVCYSWWVLSSLKIIGRLHWINKNKLKNFILACQDEEDGGFADRPGNMVDVFH 276 (287)
T ss_pred -------------------------CCchhHhhHHHHHHHHhccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCChhH
Confidence 1111111 3555555544444 8889999999876 47899943 234
Q ss_pred HHHHHHHHH
Q psy742 394 TAMAMKALI 402 (713)
Q Consensus 394 TvvALqALa 402 (713)
|.+||-+|+
T Consensus 277 t~~~l~~Ls 285 (287)
T cd02894 277 TFFGLAGLS 285 (287)
T ss_pred HHHHHHHHH
Confidence 666666665
No 31
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.17 E-value=0.0063 Score=60.89 Aligned_cols=53 Identities=26% Similarity=0.281 Sum_probs=44.4
Q ss_pred chhhHHHHHHHHHhhcCCc-chhHHHHHHHhcccCCCCcc-------ch-hhHHHHHHHHHH
Q psy742 351 INIETTAYALLVYVSRQEL-LTDPIVKWLNSQRLTDGGWA-------ST-QDTAMAMKALIE 403 (713)
Q Consensus 351 ~~VEtTAYALLa~l~~~~~-~a~~Iv~WL~~Qrn~~GGF~-------ST-QDTvvALqALa~ 403 (713)
-=||+|=||+-.+-.++.. -....++++.+-||.+|||+ || |||..||..|+.
T Consensus 209 PYiE~t~ya~r~lelL~~k~~i~~~~rFI~slqN~nGGFRRS~~~GISt~e~tYrAl~~L~~ 270 (274)
T COG1689 209 PYIEPTFYALRGLELLGGKYCISDHIRFIRSLQNQNGGFRRSYELGISTFENTYRALASLAS 270 (274)
T ss_pred CccchHHHHHhHHHHHccCcCchHHHHHHHHhhcCCCCeeeeEeccccchHHHHHHHHHHHH
Confidence 3599999999888777665 67789999999999999996 44 899999988864
No 32
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=97.10 E-value=0.017 Score=61.63 Aligned_cols=168 Identities=17% Similarity=0.176 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhcc-CCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHH
Q psy742 190 VITQAVSWVLDHQ-TPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIK 268 (713)
Q Consensus 190 ~I~~ai~WL~~~Q-~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~ 268 (713)
..++.++||.+.| ..+|+|.... + ....+..|.+++.+|.-.+++. .+...++++++
T Consensus 50 ~~~~~i~fl~~~q~~~~GgF~~~~------------~-----~~~~~~~t~~a~~~L~ll~~~~-----~i~~~~~~~~~ 107 (287)
T cd02894 50 NREEIIEFVKSCQDNEDGGFGGSP------------G-----HDPHILSTLSAIQILALYDLLN-----KIDENKEKIAK 107 (287)
T ss_pred hHHHHHHHHHHHhcCCCCCCCCCC------------C-----CcchHHHHHHHHHHHHHhhhhh-----hccHHHHHHHH
Confidence 4689999999998 6799997621 1 1123445545555543222111 12235788999
Q ss_pred HHHHhhhhc-----cCCCC-----hHHHHHHHHHHHhcCC---ccHHHHHHHHHHhhhccCCceeecCCCCCCCCCCccC
Q psy742 269 WLERNLRLL-----KDFGD-----PYEVAIVAYALRLSKA---TIAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIEN 335 (713)
Q Consensus 269 yLe~~~~~~-----~~~~~-----~YtlAl~aYALaLa~~---~~~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~ 335 (713)
|+.+.-..- ...++ +|.. +.+ |++.+. .+.+.+.+-|.+....+||..+- +
T Consensus 108 ~i~~~q~~dGgf~~~~~~e~d~~~ty~a-~~~--l~ll~~~~~i~~~~~~~~l~~~q~~dGGF~~~---~---------- 171 (287)
T cd02894 108 FIKGLQNEDGSFSGDKWGEVDTRFSYCA-VLC--LTLLGKLDLIDVDKAVDYLLSCYNFDGGFGCR---P---------- 171 (287)
T ss_pred HHHHHcCCCCCeecCCCCCchHHHHHHH-HHH--HHHhCCcchhhHHHHHHHHHHcCCCCCCcCCC---C----------
Confidence 998753210 01111 2322 222 233332 23567777777665555543211 0
Q ss_pred CCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc---chhHHHHHHHhcccCCCCcc----chhhHHHHHHHHHHHHHh
Q psy742 336 QKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL---LTDPIVKWLNSQRLTDGGWA----STQDTAMAMKALIEYTNR 407 (713)
Q Consensus 336 ~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~---~a~~Iv~WL~~Qrn~~GGF~----STQDTvvALqALa~Ya~~ 407 (713)
+.-.++-.|.+|+.++...+.. ...++++||.+.++..|||. ..-|+...--|++.++..
T Consensus 172 ------------~~es~~~~t~cavasL~llg~~~~~~~~~~~~~L~~~q~~~GGf~gr~~k~~D~~ysf~~~a~l~~l 238 (287)
T cd02894 172 ------------GAESHAGQIFCCVGALAILGSLDLIDRDRLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLKII 238 (287)
T ss_pred ------------CCCCchhHHHHHHHHHHHcCcccccCHHHHHHHHHHhCCCCCCcCCCCCCCCchhHhhHHHHHHHHh
Confidence 1124667788888888887754 77889999999999999997 456877777777776554
No 33
>PLN03012 Camelliol C synthase
Probab=96.86 E-value=0.0024 Score=75.86 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=59.8
Q ss_pred hhHH---hhhhhccCCCHHHHHHHHHHHHhccCCCcceeeccccccc-cccccCCCCCCCcccCcceehHHHHHHHHhcc
Q psy742 174 CLLC---LYIWETLMLPLQVITQAVSWVLDHQTPDGSFYETTWLVDR-KVNSSLNWPNDDVKFRNISLTAHVLITLDTVK 249 (713)
Q Consensus 174 TAfV---F~qa~~~~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~-~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~ 249 (713)
|+|| |..+..-+-+...|.++++||+++|++||+|.|.-..... ...+ +.| ..+.+.-|||++.||+.++
T Consensus 621 T~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DGGWGEs~~Sc~~~~y~~-~~~-----~~S~~~qTaWAl~aLi~ag 694 (759)
T PLN03012 621 TWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNGGWGESYLSCPKKIYIA-QEG-----EISNLVQTAWALMGLIHAG 694 (759)
T ss_pred HHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCCCcCCCCCCCCCccccC-CCC-----CCCcHHHHHHHHHHHHHcC
Confidence 6777 4433332344578999999999999999999996533221 1111 001 2356789999999999887
Q ss_pred cccCCCCCchhHHHHHHHHHHHHh
Q psy742 250 DLTGGLGARVSLAQSKAIKWLERN 273 (713)
Q Consensus 250 ~l~~g~~~~~~~~~~kA~~yLe~~ 273 (713)
... .....+.||++||-+.
T Consensus 695 ~~~-----~~~~~i~Rg~~~Ll~~ 713 (759)
T PLN03012 695 QAE-----RDPIPLHRAAKLIINS 713 (759)
T ss_pred CCC-----CCcHHHHHHHHHHHHc
Confidence 411 1124789999999884
No 34
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=96.68 E-value=0.046 Score=59.32 Aligned_cols=168 Identities=19% Similarity=0.181 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHH
Q psy742 188 LQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAI 267 (713)
Q Consensus 188 ~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~ 267 (713)
....++.++||.+.|++||+|.... + .+.++..|..++.+|.-.+++ . .....+++
T Consensus 55 ~~~~~~~i~~l~~cq~~~GGF~~~~------------~-----~~~h~~~Ty~al~~L~ll~~~----~---~id~~~~~ 110 (316)
T PLN03201 55 DVDRDEVVSWVMRCQHESGGFGGNT------------G-----HDPHILYTLSAVQILALFDRL----D---LLDADKVA 110 (316)
T ss_pred cccHHHHHHHHHHhcCCCCCcCCCC------------C-----CcccHHHHHHHHHHHHHhhhh----h---hhhHHHHH
Confidence 3346889999999999999997511 1 123454555555555432221 1 12356788
Q ss_pred HHHHHhhhhcc-----CCC--C---hHHHHHHHHHHHhcCC---ccHHHHHHHHHHhhhccCCceeecCCCCCCCCCCcc
Q psy742 268 KWLERNLRLLK-----DFG--D---PYEVAIVAYALRLSKA---TIAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIE 334 (713)
Q Consensus 268 ~yLe~~~~~~~-----~~~--~---~YtlAl~aYALaLa~~---~~~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~ 334 (713)
+||.+.-..-. ..+ | .|. |+++ |++.+. .+.+.+.+-|.+....+||..+-...
T Consensus 111 ~~l~s~Q~~dGgF~~~~~ge~D~r~ty~-a~a~--l~LL~~~~~i~~~~~~~~i~scq~~dGGF~~~p~~---------- 177 (316)
T PLN03201 111 SYVAGLQNEDGSFSGDEWGEIDTRFSYC-ALCC--LSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGG---------- 177 (316)
T ss_pred HHHHHhcCCCCCccCCCCCCccHHHHHH-HHHH--HHHhCccchhHHHHHHHHHHHhcCCCCCcCCCCCC----------
Confidence 88887643210 011 1 233 2222 333332 23456667676666556654322110
Q ss_pred CCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCC--c-chhHHHHHHHhcccCCCCccch----hhHHHHHHHHHHHHHh
Q psy742 335 NQKPFLLPRLPYKYDAINIETTAYALLVYVSRQE--L-LTDPIVKWLNSQRLTDGGWAST----QDTAMAMKALIEYTNR 407 (713)
Q Consensus 335 ~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~--~-~a~~Iv~WL~~Qrn~~GGF~ST----QDTvvALqALa~Ya~~ 407 (713)
-.+.-.|..|+-++...+. . ....+.+||.+.|...|||.-. -|+..+--+++..+..
T Consensus 178 ---------------esh~g~T~caiaaL~llg~~~~~d~~~l~~wL~~rQ~~~GGf~grp~k~~D~cys~w~~a~L~ll 242 (316)
T PLN03201 178 ---------------ESHAGQIFCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIII 242 (316)
T ss_pred ---------------CCccceehHHHHHHHHcCccccCCHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHHHh
Confidence 0111123334434433343 3 5578899999999889999753 6888888877776654
No 35
>PLN02993 lupeol synthase
Probab=96.65 E-value=0.0044 Score=73.80 Aligned_cols=76 Identities=18% Similarity=0.195 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHhccCCCcceeecccccc-ccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHH
Q psy742 187 PLQVITQAVSWVLDHQTPDGSFYETTWLVD-RKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSK 265 (713)
Q Consensus 187 D~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h-~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~k 265 (713)
+...|.++++||+++|++||+|.|.-.... +...+ +.| ..+.+.-||+++.||++++. ..+....+.|
T Consensus 637 ~~~~IrrAv~fLls~Q~~DGGWGEs~~S~~~~~y~~-~~~-----~~St~~qTAwAllaL~~aG~-----~~~~~~~l~R 705 (763)
T PLN02993 637 DCLAMRKGVHFLLTIQRDDGGWGESYLSCPEQRYIP-LEG-----NRSNLVQTAWAMMGLIHAGQ-----AERDLIPLHR 705 (763)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcCcCcCcCCCccccc-CCC-----CCCchhhHHHHHHHHHHcCC-----CCCCcHHHHH
Confidence 347899999999999999999988542211 11110 001 23567789999999999874 1112357899
Q ss_pred HHHHHHHh
Q psy742 266 AIKWLERN 273 (713)
Q Consensus 266 A~~yLe~~ 273 (713)
|++||-+.
T Consensus 706 gi~~L~~~ 713 (763)
T PLN02993 706 AAKLIITS 713 (763)
T ss_pred HHHHHHhc
Confidence 99998774
No 36
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=96.52 E-value=0.003 Score=56.84 Aligned_cols=60 Identities=33% Similarity=0.529 Sum_probs=11.9
Q ss_pred HHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHH
Q psy742 191 ITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWL 270 (713)
Q Consensus 191 I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yL 270 (713)
|+++++||+++|++||+|.... +.+...|++.+.+|...++ .. ...++.||++||
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~-------------------~~~~~~t~~~~~al~~~~~--~~----~~~ai~ka~~~l 55 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNW-------------------GSDVFVTAALILALAAAGD--AA----VDEAIKKAIDWL 55 (109)
T ss_dssp -----------------------------------------------------------T--S-----SSBSSHHHHHHH
T ss_pred Cccccccccccccccccccccc-------------------cccccccccccccccccCC--CC----cHHHHHHHHHHH
Confidence 6789999999999999996521 1235678888888877653 22 234689999999
Q ss_pred HHhhh
Q psy742 271 ERNLR 275 (713)
Q Consensus 271 e~~~~ 275 (713)
.++-.
T Consensus 56 ~~~Q~ 60 (109)
T PF13243_consen 56 LSHQN 60 (109)
T ss_dssp HH---
T ss_pred HHhcC
Confidence 99853
No 37
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=96.20 E-value=0.0088 Score=53.90 Aligned_cols=55 Identities=38% Similarity=0.508 Sum_probs=45.5
Q ss_pred cchhhHHHHHHHHHhhcCCc-chhHH--HHHHHhcccCCCCccchh--------hHHHHHHHHHHH
Q psy742 350 AINIETTAYALLVYVSRQEL-LTDPI--VKWLNSQRLTDGGWASTQ--------DTAMAMKALIEY 404 (713)
Q Consensus 350 s~~VEtTAYALLa~l~~~~~-~a~~I--v~WL~~Qrn~~GGF~STQ--------DTvvALqALa~Y 404 (713)
..++.+|++||++|...+.. ...++ ++||.++++.+|||.+.. .|.+||.||..+
T Consensus 20 ~~~~~~T~~al~aL~~~g~~~~~~~~~~~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~~l~~l~~~ 85 (113)
T PF13249_consen 20 PSDVWDTAFALLALAALGEEPDRDRAAAVEWLLSQQNPDGGWGSNPDGGPPDVYTTYVALAALELL 85 (113)
T ss_dssp -BEHHHHHHHHHHHHHHTSHHCHHHHHHHHHHHHHB-TTSGBBSSTTTT-BSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhCCCCCCccCCCCCCCccHHHHHHHHHHHHHc
Confidence 46899999999999998887 77778 999999999999999875 377888888544
No 38
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=96.03 E-value=0.2 Score=54.17 Aligned_cols=196 Identities=16% Similarity=0.231 Sum_probs=104.5
Q ss_pred hhhhhhHH---hhhhhcc-CCCHHHHHHHHHHHHhcc----CCCcceeeccccccccccccCCCCCCCcccCcceehHHH
Q psy742 170 LWYSCLLC---LYIWETL-MLPLQVITQAVSWVLDHQ----TPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHV 241 (713)
Q Consensus 170 tWL~TAfV---F~qa~~~-~ID~~~I~~ai~WL~~~Q----~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyV 241 (713)
.|+ |=|+ +.-..+- .++...-++.++||.++| .+||+|....... ....+. .....+++.|=++
T Consensus 27 ~~~-~yf~l~~L~lL~~~~~~~~~~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~-~~~~~~------~~~~~~l~~ty~A 98 (307)
T cd02895 27 LTI-AFFALSGLDLLGALDSILVEEKDDIIEWIYSLQVLSNLPRGGFRGSSTLG-LPGTAS------KYDTGNLAMTYFA 98 (307)
T ss_pred HHH-HHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCc-cccccc------cCCcccHHHHHHH
Confidence 677 7666 2222222 223444578899999999 9999998732110 000000 0123567777777
Q ss_pred HHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhhccCC-CC------------hHHHHHHHHHHHhcCC-----ccHHH
Q psy742 242 LITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDF-GD------------PYEVAIVAYALRLSKA-----TIAEA 303 (713)
Q Consensus 242 liaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~-~~------------~YtlAl~aYALaLa~~-----~~~~~ 303 (713)
+.+|.-.++ ... ....++.++||.+-...-..+ +. .|.... +|.+.+. .+.+.
T Consensus 99 l~~L~lL~~---~~~---~idr~~i~~~l~~~q~~dGgF~~~~~~~~~e~d~r~ty~Av~---~l~lL~~~~~~~~d~~~ 169 (307)
T cd02895 99 LLSLLILGD---DLS---RVDRKAILNFLSKLQLPDGSFGSVLDSEGGENDMRFCYCAVA---ICYMLDDWSEEDIDKEK 169 (307)
T ss_pred HHHHHHhCC---chh---hhhHHHHHHHHHHhCCCCCCccCCcCCcCCCccHHHHHHHHH---HHHHhCCCccccccHHH
Confidence 766643321 111 123577888988864311001 11 122111 2334442 23556
Q ss_pred HHHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHH--HHHhhcCC---c-chhHHHHH
Q psy742 304 AFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYAL--LVYVSRQE---L-LTDPIVKW 377 (713)
Q Consensus 304 al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYAL--La~l~~~~---~-~a~~Iv~W 377 (713)
+.+-|.+....+||.. ..+. .-.+.-.|-.|+ |+++.... . ....+++|
T Consensus 170 li~~l~s~Q~~dGGF~---~~~~----------------------~Esh~g~Tyca~asL~lL~~~~~~~~~~~~~l~~w 224 (307)
T cd02895 170 LIDYIKSSQSYDGGFG---QGPG----------------------LESHGGSTFCAIASLSLLGKLEELSEKFLERLKRW 224 (307)
T ss_pred HHHHHHHccCCCCCcc---CCCC----------------------CCccccHHHHHHHHHHHcCCccccccccHHHHHHH
Confidence 7777777766665432 1100 011222333333 44443322 3 67889999
Q ss_pred HHhcccCCCCccch----hhHHHHHHHHHHHHHh
Q psy742 378 LNSQRLTDGGWAST----QDTAMAMKALIEYTNR 407 (713)
Q Consensus 378 L~~Qrn~~GGF~ST----QDTvvALqALa~Ya~~ 407 (713)
|.+.|+..|||... -|+..+--+++..+..
T Consensus 225 L~~rQ~~~GGF~gr~~k~~D~cysfw~~a~L~iL 258 (307)
T cd02895 225 LVHRQVSGTGFNGRPNKPADTCYSFWVGASLKLL 258 (307)
T ss_pred HHHhcCCCCCcCCCCCCCCccchhhHHHHHHHHc
Confidence 99999999999653 3877777777665543
No 39
>PLN02710 farnesyltranstransferase subunit beta
Probab=95.87 E-value=0.23 Score=55.94 Aligned_cols=193 Identities=15% Similarity=0.177 Sum_probs=103.2
Q ss_pred hhhhhhHHhhhhhcc--CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHh
Q psy742 170 LWYSCLLCLYIWETL--MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247 (713)
Q Consensus 170 tWL~TAfVF~qa~~~--~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~e 247 (713)
.|+ +=|++.-..-. .+|+..-++.++||.+.|.+||+|.. + +| ...++..|=.++.+|.-
T Consensus 72 ~~~-~Yw~L~sL~lLg~~l~~~~~~~ii~~l~~cQ~~dGGFgg-~-----------pg-----~~~hl~~TY~Av~~L~i 133 (439)
T PLN02710 72 PWL-CYWILHSIALLGESLDDELENDTIDFLSRCQDPNGGYGG-G-----------PG-----QLPHLATTYAAVNTLVT 133 (439)
T ss_pred HHH-HHHHHHHHHHhCCcccHHHHHHHHHHHHHhcCCCcCCCC-C-----------CC-----CCccHHHHHHHHHHHHH
Confidence 898 87773333223 36777788999999999999999965 1 11 12345444444445543
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhhhhcc-----C-----CCChHHHHHHHHHHHhcCCccHHHHHHHHHHhhhccCC
Q psy742 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLLK-----D-----FGDPYEVAIVAYALRLSKATIAEAAFGILTQHARSEGG 317 (713)
Q Consensus 248 a~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~-----~-----~~~~YtlAl~aYALaLa~~~~~~~al~~L~~~a~~~~~ 317 (713)
.++.+ .+. . ....+.++||.+-...-. . ....|....+++-|........+.+.+-|.+....+||
T Consensus 134 Lg~~~-~l~-~--Idr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l~~~~~e~~~~~I~scQ~~dGG 209 (439)
T PLN02710 134 IGGER-ALS-S--INREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNILDDELVKGVGDYILSCQTYEGG 209 (439)
T ss_pred cCCch-hhc-c--cCHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcCchhhHHHHHHHHHHhCCCCCC
Confidence 22200 011 0 124667788876442100 0 11356544444433322222345666666666655665
Q ss_pred ceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-chhHHHHHHHhcccCCCCccc----hh
Q psy742 318 LTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-LTDPIVKWLNSQRLTDGGWAS----TQ 392 (713)
Q Consensus 318 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-~a~~Iv~WL~~Qrn~~GGF~S----TQ 392 (713)
..-..... .+..| --.|.|-|++|..-+. ...++++||.+.|+..|||.- --
T Consensus 210 F~g~P~~E----------aH~gy-------------TfcavAsL~LLg~l~~id~~~l~~WL~~rQ~~~GGF~GR~nKl~ 266 (439)
T PLN02710 210 IGGEPGAE----------AHGGY-------------TFCGLAAMILINEVDRLDLPSLINWVVFRQGVEGGFQGRTNKLV 266 (439)
T ss_pred CCCCCCCC----------CchHH-------------HHHHHHHHHHcCCccccCHHHHHHHHHHhcCcCCCcCCCCCCCC
Confidence 44221110 00000 0122333444433233 778999999999999999973 24
Q ss_pred hHHHHHHHHHHHHHh
Q psy742 393 DTAMAMKALIEYTNR 407 (713)
Q Consensus 393 DTvvALqALa~Ya~~ 407 (713)
|++.+--.++..+..
T Consensus 267 D~CYSfW~~a~L~lL 281 (439)
T PLN02710 267 DGCYSFWQGGVFALL 281 (439)
T ss_pred CchhhHHHHHHHHHH
Confidence 877766666655543
No 40
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=95.75 E-value=0.063 Score=57.80 Aligned_cols=167 Identities=15% Similarity=0.189 Sum_probs=86.1
Q ss_pred HHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHH
Q psy742 191 ITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWL 270 (713)
Q Consensus 191 I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yL 270 (713)
..+.++||.+.|++||+|.... ++ +.+.. ..|..++.+..- +.. . ...++++++||
T Consensus 100 ~~~~~~~l~~~q~~dGgf~~~~------------~~-----e~D~r-~tycava~~~lL---~~~-~--~~~~~~~~~~l 155 (299)
T cd02893 100 REALYKFLLSLKQPDGSFRMHV------------GG-----EVDVR-GTYCAISVASLL---NIL-T--DELFEGVAEYI 155 (299)
T ss_pred HHHHHHHHHHhcCCCCCeeCCC------------CC-----CchHh-HHHHHHHHHHHh---CCC-c--hhhHHHHHHHH
Confidence 4569999999999999998841 11 12322 224333332211 111 1 23578999999
Q ss_pred HHhhhh---c-----cCCCChHHHHHHHHHHHhcCCc---cHHHHHHHHHHhhhc-cCCceeecCCCCCCCCCCccCCCC
Q psy742 271 ERNLRL---L-----KDFGDPYEVAIVAYALRLSKAT---IAEAAFGILTQHARS-EGGLTYWGKEPVPAPPSKIENQKP 338 (713)
Q Consensus 271 e~~~~~---~-----~~~~~~YtlAl~aYALaLa~~~---~~~~al~~L~~~a~~-~~~~~~W~~~~~~~~~~~~~~~~~ 338 (713)
.+.-.. . .+....|+-. +.-+|++.+.. +.+.+.+-|.++... ++|...-.... .+.=..
T Consensus 156 ~~cQ~~dGGF~~~p~~e~h~~yTfc-avasL~llg~~~~~d~~~l~~wl~~~q~~~~GGf~grp~k~-------~D~cys 227 (299)
T cd02893 156 LSCQTYEGGFGGVPGNEAHGGYTFC-ALAALAILGKPDKLDLESLLRWLVARQMRFEGGFQGRTNKL-------VDGCYS 227 (299)
T ss_pred HHcCCCCCCcCCCCCCCCCccHHHH-HHHHHHHcCCccccCHHHHHHHHHhhcCCCCCCcCCCCCCC-------CccHHH
Confidence 875421 0 0011123322 22356666643 456777777766544 44432111100 000000
Q ss_pred CCCCCCCCCCCcchhhHHHHHHHHHhhc----------CCc-chhHHHHHHH-hcccCCCCccc----hhh---HHHHHH
Q psy742 339 FLLPRLPYKYDAINIETTAYALLVYVSR----------QEL-LTDPIVKWLN-SQRLTDGGWAS----TQD---TAMAMK 399 (713)
Q Consensus 339 ~~~~~~~~~~~s~~VEtTAYALLa~l~~----------~~~-~a~~Iv~WL~-~Qrn~~GGF~S----TQD---TvvALq 399 (713)
||. .++++++..+.. ... ....+.+||. .|++..|||.. .-| |.+||-
T Consensus 228 ~w~-------------~a~l~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~~q~~~GGf~~~p~~~~D~yHT~~~l~ 294 (299)
T cd02893 228 FWV-------------GGSLPILEAILNAEKKFDDSAEGTLFDQEALQEYILLCCQSEEGGLRDKPGKPRDFYHTCYALS 294 (299)
T ss_pred HHH-------------HHHHHHHHHHhcccccccccccccccCHHHHHHHHHHhcCCCCCCcCCCCCCCCCchhHHHHHH
Confidence 111 122333332211 123 6788999999 67788999953 234 888888
Q ss_pred HHH
Q psy742 400 ALI 402 (713)
Q Consensus 400 ALa 402 (713)
+|+
T Consensus 295 ~Ls 297 (299)
T cd02893 295 GLS 297 (299)
T ss_pred HHh
Confidence 886
No 41
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=95.66 E-value=0.13 Score=55.92 Aligned_cols=163 Identities=17% Similarity=0.250 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHH
Q psy742 190 VITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKW 269 (713)
Q Consensus 190 ~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~y 269 (713)
.+++.++||.+.|+.+|.|...+ + .+..++++-|++.+|.=-+.+. ....+++++|
T Consensus 9 ~~~kh~~yl~~~~~~~~~~~~~~------~-----------~~~r~~~~y~~l~~L~lL~~~~-------~~~~~~~i~~ 64 (316)
T PLN03201 9 VVDKHVRYIKSLEKKKDSFESVV------M-----------EHLRMNGAYWGLTALDLLGKLD-------DVDRDEVVSW 64 (316)
T ss_pred cHHHHHHHHHHhCCCCCCccccc------c-----------ccchHHHHHHHHHHHHHhCCCc-------cccHHHHHHH
Confidence 46889999999998888886522 0 1223556767777664333211 1245889999
Q ss_pred HHHhhhhccC-----CCChHHHHHHHH----HHHhcCCc---cHHHHHHHHHHhhhccCCceeecCCCCCCCCCCccCCC
Q psy742 270 LERNLRLLKD-----FGDPYEVAIVAY----ALRLSKAT---IAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQK 337 (713)
Q Consensus 270 Le~~~~~~~~-----~~~~YtlAl~aY----ALaLa~~~---~~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~ 337 (713)
|.+.-..-.. ..+++ ...+| +|.+.++. +.+.+.+-|.+....+|+ |....
T Consensus 65 l~~cq~~~GGF~~~~~~~~h--~~~Ty~al~~L~ll~~~~~id~~~~~~~l~s~Q~~dGg---F~~~~------------ 127 (316)
T PLN03201 65 VMRCQHESGGFGGNTGHDPH--ILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGS---FSGDE------------ 127 (316)
T ss_pred HHHhcCCCCCcCCCCCCccc--HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCCCCC---ccCCC------------
Confidence 9885421000 01111 11122 12222322 234566666666555543 32110
Q ss_pred CCCCCCCCCCCCcchhhHH--HHHHHHHhhcCCc-chhHHHHHHHhcccCCCCccchh-------hHHHHHHHHHH
Q psy742 338 PFLLPRLPYKYDAINIETT--AYALLVYVSRQEL-LTDPIVKWLNSQRLTDGGWASTQ-------DTAMAMKALIE 403 (713)
Q Consensus 338 ~~~~~~~~~~~~s~~VEtT--AYALLa~l~~~~~-~a~~Iv~WL~~Qrn~~GGF~STQ-------DTvvALqALa~ 403 (713)
+.-.|+..| |.+.+.++..-+. ....+++||.+.+++.|||.... .|..|+-||+-
T Consensus 128 ----------~ge~D~r~ty~a~a~l~LL~~~~~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~caiaaL~l 193 (316)
T PLN03201 128 ----------WGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCVGALAI 193 (316)
T ss_pred ----------CCCccHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHHHHHHH
Confidence 011244332 3444444432222 56789999999999999998642 27777777753
No 42
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=95.64 E-value=0.014 Score=52.56 Aligned_cols=61 Identities=25% Similarity=0.432 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHH
Q psy742 188 LQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAI 267 (713)
Q Consensus 188 ~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~ 267 (713)
...|.++++||.++|++||+|.+.+. .....|+..+.+|.-++. .+ ....+.|++
T Consensus 45 ~~ai~ka~~~l~~~Q~~dG~w~~~~~-------------------~~~~~t~~~~~~l~~~~~-~~-----~~~~~~r~~ 99 (109)
T PF13243_consen 45 DEAIKKAIDWLLSHQNPDGGWGYSGG-------------------EYVSMTAAAIAALALAGV-YP-----DDEAVERGL 99 (109)
T ss_dssp SBSSHHHHHHHHH---TTS--S-TS---------------------HHHHHHHHHHHHHHHHT-T-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCcCC-------------------CCHHHHHHHHHHHHHhCC-CC-----CCHHHHHHH
Confidence 35679999999999999999987420 123345555555543331 11 246789999
Q ss_pred HHHHHh
Q psy742 268 KWLERN 273 (713)
Q Consensus 268 ~yLe~~ 273 (713)
+||.++
T Consensus 100 ~wi~~~ 105 (109)
T PF13243_consen 100 EWILSH 105 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 999987
No 43
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=94.91 E-value=0.34 Score=52.35 Aligned_cols=92 Identities=20% Similarity=0.273 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHhcCCccHHHHHHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHH
Q psy742 283 PYEVAIVAYALRLSKATIAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLV 362 (713)
Q Consensus 283 ~YtlAl~aYALaLa~~~~~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa 362 (713)
-|..++...||-+.+.........+|-.....+ |+ .+...+|-|.|+|.||
T Consensus 145 yYq~sL~vLALCv~~~~~~~~~v~kL~~~~~~~-----------------------~~------~~~~~sVDT~AmA~LA 195 (326)
T PF01122_consen 145 YYQYSLGVLALCVHNKRVSLSVVAKLLKAENHN-----------------------FY------HGSQFSVDTGAMAVLA 195 (326)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHSS-----------------------TS------S-STCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHccCCCcCHHHHHHHHHHHHhh-----------------------cc------cCCCCCccHHHHHHHH
Confidence 378888888887777655545556665432211 00 1235789999999999
Q ss_pred HhhcCC-----------c--chhHHHHHHHhcccCCCCccchhhHHHHHHHHHH
Q psy742 363 YVSRQE-----------L--LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIE 403 (713)
Q Consensus 363 ~l~~~~-----------~--~a~~Iv~WL~~Qrn~~GGF~STQDTvvALqALa~ 403 (713)
+.-..+ + ....++++|.++|..+|-|+..-.|-.|+|||..
T Consensus 196 LtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~GNiySTglAmQAL~~ 249 (326)
T PF01122_consen 196 LTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFGNIYSTGLAMQALSV 249 (326)
T ss_dssp HHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BSSTTTHHHHHHHHTT
T ss_pred HHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCcccchhhHHHHHHHHhc
Confidence 875322 1 2347899999999999999999999999999963
No 44
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=94.66 E-value=0.24 Score=53.53 Aligned_cols=168 Identities=19% Similarity=0.185 Sum_probs=86.2
Q ss_pred HHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHH
Q psy742 191 ITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWL 270 (713)
Q Consensus 191 I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yL 270 (713)
.++.++||.+.|++||+|..... . .+ .+.+...|=.++.+|.-.+.... + ....++.++||
T Consensus 114 r~~i~~~l~~~q~~dGgF~~~~~---~------~~-----~e~d~r~ty~Av~~l~lL~~~~~----~-~~d~~~li~~l 174 (307)
T cd02895 114 RKAILNFLSKLQLPDGSFGSVLD---S------EG-----GENDMRFCYCAVAICYMLDDWSE----E-DIDKEKLIDYI 174 (307)
T ss_pred HHHHHHHHHHhCCCCCCccCCcC---C------cC-----CCccHHHHHHHHHHHHHhCCCcc----c-cccHHHHHHHH
Confidence 46788999999999999987320 0 01 12344444333333322221110 0 12357888998
Q ss_pred HHhhhhccCC-CCh-------HH-HHHHHHHHHhcCC------ccHHHHHHHHHHhhhccCCceeecCCCCCCCCCCccC
Q psy742 271 ERNLRLLKDF-GDP-------YE-VAIVAYALRLSKA------TIAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIEN 335 (713)
Q Consensus 271 e~~~~~~~~~-~~~-------Yt-lAl~aYALaLa~~------~~~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~ 335 (713)
.+.-..-..+ ..+ |+ -|++ +|++.+. .+.+.+.+-|.++...++|...-... . .+
T Consensus 175 ~s~Q~~dGGF~~~~~~Esh~g~Tyca~a--sL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr~~k--~------~D 244 (307)
T cd02895 175 KSSQSYDGGFGQGPGLESHGGSTFCAIA--SLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGRPNK--P------AD 244 (307)
T ss_pred HHccCCCCCccCCCCCCccccHHHHHHH--HHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCCCCC--C------Cc
Confidence 8764320000 111 21 1222 3444443 23556777777666555544211100 0 00
Q ss_pred CCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-chhHHHHHHHh-cccCCCCccchh----h---HHHHHHHHH
Q psy742 336 QKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-LTDPIVKWLNS-QRLTDGGWASTQ----D---TAMAMKALI 402 (713)
Q Consensus 336 ~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-~a~~Iv~WL~~-Qrn~~GGF~STQ----D---TvvALqALa 402 (713)
..|.+ -+.|.|.++...+. ...++.+||.. |+...|||.-.. | |.+||-||+
T Consensus 245 --~cysf-------------w~~a~L~iL~~~~~id~~~l~~~l~~~q~~~~GGf~~~p~~~~D~~ht~~~la~Ls 305 (307)
T cd02895 245 --TCYSF-------------WVGASLKLLDAFQLIDFEKNRNYLLSTQQSLVGGFAKNPDSHPDPLHSYLGLAALS 305 (307)
T ss_pred --cchhh-------------HHHHHHHHcCcccccCHHHHHHHHHHHcCCCCCCcCCCCCCCCChhHHHHHHHHHH
Confidence 01111 12445555544344 88999999996 445689998543 4 677777765
No 45
>KOG0497|consensus
Probab=94.14 E-value=0.89 Score=53.07 Aligned_cols=212 Identities=19% Similarity=0.269 Sum_probs=125.1
Q ss_pred CCCHHHHHHHHHHHHhccCCCcceeeccccccccc----cccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCC-ch
Q psy742 185 MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKV----NSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGA-RV 259 (713)
Q Consensus 185 ~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m----~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~-~~ 259 (713)
.+|++-+..+++.|+.-|..+|+|..-.+.--..| +..=.+++-.....-+-.|.=++.||..-.++-+|+.. .+
T Consensus 508 ~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~Ei 587 (760)
T KOG0497|consen 508 KIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKEI 587 (760)
T ss_pred CCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHHH
Confidence 68999999999999999999999864332111111 00001111112334466777777888654443343332 34
Q ss_pred hHHHHHHHHHHHHhhhhccCC----C--ChHHHHHHHHHHHhcCC-----ccHHHHHHHHHHhhhccCCceeecCCCCCC
Q psy742 260 SLAQSKAIKWLERNLRLLKDF----G--DPYEVAIVAYALRLSKA-----TIAEAAFGILTQHARSEGGLTYWGKEPVPA 328 (713)
Q Consensus 260 ~~~~~kA~~yLe~~~~~~~~~----~--~~YtlAl~aYALaLa~~-----~~~~~al~~L~~~a~~~~~~~~W~~~~~~~ 328 (713)
..++.+|+.|+++.-..-.++ + -.|.-=.+.=+|+.+|. +....+..-|-..+..++| |+.....-
T Consensus 588 ~~~i~~av~~ie~~Q~~DGSWyGsWgvCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GG---WgEs~lsc 664 (760)
T KOG0497|consen 588 EKSIEKAVEFIEKLQLPDGSWYGSWGVCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGG---WGESYLSC 664 (760)
T ss_pred HHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCC---CccccccC
Confidence 568899999999964211101 0 12333333334555553 2345677777766666654 76543111
Q ss_pred CCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-----chhHHHHHHHhcccCCCCccc-------------
Q psy742 329 PPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-----LTDPIVKWLNSQRLTDGGWAS------------- 390 (713)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-----~a~~Iv~WL~~Qrn~~GGF~S------------- 390 (713)
+ +.+ | .|..+.+..|--|+.||++++..+.. -..+.++-|...+..+|-|.-
T Consensus 665 p-----~~~--Y---i~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpqq~i~g~f~~~~~~ 734 (760)
T KOG0497|consen 665 P-----EKR--Y---IPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQQEIEGVFNKNCMI 734 (760)
T ss_pred c-----ccc--c---cccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcchhHHHHHhhhhhhh
Confidence 1 111 1 12234567888899999999987764 334688999988889998872
Q ss_pred ---hhhHHHHHHHHHHHHHhcc
Q psy742 391 ---TQDTAMAMKALIEYTNRHR 409 (713)
Q Consensus 391 ---TQDTvvALqALa~Ya~~~~ 409 (713)
|---+..|.||++|++...
T Consensus 735 ~y~~yr~~F~~waL~~y~~~~~ 756 (760)
T KOG0497|consen 735 HYPTYRNIFPIWALGEYRKAYR 756 (760)
T ss_pred ccchhhhhccHHHHHHHHHHhh
Confidence 1122345789999987643
No 46
>KOG0365|consensus
Probab=90.99 E-value=4.1 Score=44.07 Aligned_cols=147 Identities=20% Similarity=0.323 Sum_probs=84.3
Q ss_pred hhhhhhHHhhhhhcc--CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHH-HHH
Q psy742 170 LWYSCLLCLYIWETL--MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLI-TLD 246 (713)
Q Consensus 170 tWL~TAfVF~qa~~~--~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVli-aL~ 246 (713)
.|+ -=+.+.-.+-. .||+++..+++.+|...|.+.|+|.- | ++.-..++ +.|+.+ ||.
T Consensus 100 ~Wm-~YWil~sl~lL~~~~dd~v~~~~i~fL~~c~~PeGGfgG---------------G--PGQl~HLA-~TYAAVnaL~ 160 (423)
T KOG0365|consen 100 PWM-CYWILNSLALLDEWLDDDVKENAIDFLFTCQGPEGGFGG---------------G--PGQLPHLA-PTYAAVNALC 160 (423)
T ss_pred chh-HHHHHHHHHHhcCcCCHHHHHHHHHHHHhcCCCCCCCCC---------------C--Cccchhhh-HHHHHHHHHH
Confidence 676 33333333333 79999999999999999999999733 1 11222232 234332 443
Q ss_pred hcccccCCCCCchhHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHhcCCccHHHHHHHHHHhhhccCCceeecCCCC
Q psy742 247 TVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGILTQHARSEGGLTYWGKEPV 326 (713)
Q Consensus 247 ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~~~~YtlAl~aYALaLa~~~~~~~al~~L~~~a~~~~~~~~W~~~~~ 326 (713)
-.+ + .+|.+ .+ +++.+.+-|.+.+..+|+++.-...
T Consensus 161 ~~~----~---------e~A~~-------~I----------------------nR~~l~~fL~slK~~dGgFrmh~~G-- 196 (423)
T KOG0365|consen 161 LCG----S---------EDAYS-------SI----------------------NREKLYQFLFSLKDPDGGFRMHVEG-- 196 (423)
T ss_pred hcC----c---------HHHHH-------Hh----------------------hHHHHHHHHHHhcCCCCCeEeecCC--
Confidence 211 0 00110 01 3346677777777767665432211
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCC---c-chhHHHHHHHhcccCCCCccchh-------hHH
Q psy742 327 PAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQE---L-LTDPIVKWLNSQRLTDGGWASTQ-------DTA 395 (713)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~---~-~a~~Iv~WL~~Qrn~~GGF~STQ-------DTv 395 (713)
-.|+. .+|+.++.-..-. - ..+-...||.+-|++-|||++-. =|.
T Consensus 197 -----------------------E~DvR-s~YcA~svasllni~~deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTF 252 (423)
T KOG0365|consen 197 -----------------------EVDVR-SAYCALSVASLLNIPMDELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTF 252 (423)
T ss_pred -----------------------cchHH-HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccccCCcCCCccccccCCeeH
Confidence 12232 3466665544322 2 55678999999999999999853 267
Q ss_pred HHHHHHHH
Q psy742 396 MAMKALIE 403 (713)
Q Consensus 396 vALqALa~ 403 (713)
.||-||+-
T Consensus 253 CalAalal 260 (423)
T KOG0365|consen 253 CALAALAL 260 (423)
T ss_pred HHHHHHHH
Confidence 77776654
No 47
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=90.71 E-value=0.35 Score=36.38 Aligned_cols=20 Identities=30% Similarity=0.659 Sum_probs=18.6
Q ss_pred HHHHHHHHHhccCCCcceee
Q psy742 191 ITQAVSWVLDHQTPDGSFYE 210 (713)
Q Consensus 191 I~~ai~WL~~~Q~~dG~F~e 210 (713)
++++++||.++|++||+|..
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~ 22 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGG 22 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBS
T ss_pred HHHHHHHHHHHCCCCCCCCC
Confidence 68899999999999999977
No 48
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.13 E-value=2.9 Score=44.71 Aligned_cols=169 Identities=19% Similarity=0.242 Sum_probs=82.8
Q ss_pred HHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHH
Q psy742 193 QAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLER 272 (713)
Q Consensus 193 ~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~ 272 (713)
+..+|+.+.|++||+|..... |. ...+. .|..++++.. .+.... ....-+++||.+
T Consensus 130 ~l~~fi~~lk~pdGsF~~~~~-----------ge----vDtr~---~Y~al~ilsl---lg~~~~---~~~e~~vdyl~k 185 (342)
T COG5029 130 SLASFISGLKNPDGSFRSDLE-----------GE----VDTRF---LYIALSILSL---LGDLDK---ELFEGAVDYLKK 185 (342)
T ss_pred HHHHHHHhccCCCCceecccC-----------Cc----chHHH---HHHHHHHHHH---Hhhcch---hhhHHHHHHHHH
Confidence 578999999999999987441 22 11222 4444433221 111111 234778889998
Q ss_pred hhhhccC-CCChHHHHHHHHHHHhcCCccHHHHHHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcc
Q psy742 273 NLRLLKD-FGDPYEVAIVAYALRLSKATIAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAI 351 (713)
Q Consensus 273 ~~~~~~~-~~~~YtlAl~aYALaLa~~~~~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 351 (713)
--+--.. ..-||+-|-.+|++--.. +-+.+++|+.....+ ....|-.....+.... + |++.
T Consensus 186 CqnyeGGFg~~p~aEaHag~tFcala---alalL~~Ld~ls~~E-~l~~Wl~~RQ~ssgGl--~------------GR~n 247 (342)
T COG5029 186 CQNYEGGFGLCPYAEAHAGYTFCALA---ALALLGKLDKLSDVE-KLIRWLAERQLSSGGL--N------------GRSN 247 (342)
T ss_pred hhccCCcccCCCchhhccchHHHHHH---HHHHHhcccccchHH-HHHHHHHHcccccCCc--C------------CCcc
Confidence 6542111 125777777777432110 001222222221111 1334433221100000 0 0111
Q ss_pred hhhHHHHHH-----HHHhhcCCc-chhHHHHHHHhcc-cCCCCccchh-------hHHHHHHHHHH
Q psy742 352 NIETTAYAL-----LVYVSRQEL-LTDPIVKWLNSQR-LTDGGWASTQ-------DTAMAMKALIE 403 (713)
Q Consensus 352 ~VEtTAYAL-----La~l~~~~~-~a~~Iv~WL~~Qr-n~~GGF~STQ-------DTvvALqALa~ 403 (713)
-.+.|-|+- |+++...+. ..+.+-++|...+ ...|||+-+. =|+++|-|||-
T Consensus 248 Kl~D~CYs~WvlsSl~il~~~~~in~e~L~~yiL~c~q~~sGGfsdrp~~~~D~yHt~~~lagLsl 313 (342)
T COG5029 248 KLVDTCYSFWVLSSLAILGKLDFINTEELTDYILDCQQETSGGFSDRPGEEPDVYHTCFGLAGLSL 313 (342)
T ss_pred cCccchhhhhhcchHHhcchhhhcCHHHHHHHHHhhcccCCCCCCCCCcccchHHHHHHHHHHHHH
Confidence 111122221 223334455 7788888886544 4499999763 38999999874
No 49
>KOG0366|consensus
Probab=84.62 E-value=16 Score=38.32 Aligned_cols=168 Identities=18% Similarity=0.186 Sum_probs=86.3
Q ss_pred HHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHH
Q psy742 191 ITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWL 270 (713)
Q Consensus 191 I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yL 270 (713)
..+-..|+.+-|++||+|.-.. .|. .....+..|-...+|+. +++ ...+++|++|+
T Consensus 116 ~d~v~~yi~gLq~edGsF~gD~-----------wGE----vDTRfs~~av~~L~lLg--~ld-------~~nve~aVd~~ 171 (329)
T KOG0366|consen 116 RDKVASYIKGLQQEDGSFSGDI-----------WGE----VDTRFSYCAVACLALLG--KLD-------TINVEKAVDFV 171 (329)
T ss_pred HHHHHHHHHhhcCcCCcccCCc-----------ccc----cchhhhHHHHHHHHHHh--hHH-------HhhHHHHHHHH
Confidence 4456889999999999996633 243 22345566666556642 222 23579999999
Q ss_pred HHhhhhccCCC---ChHHHHHHHH----HHHhcCCccHHHHHHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCC
Q psy742 271 ERNLRLLKDFG---DPYEVAIVAY----ALRLSKATIAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPR 343 (713)
Q Consensus 271 e~~~~~~~~~~---~~YtlAl~aY----ALaLa~~~~~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 343 (713)
.+=.+.-..++ ..-+.|=..| ||++++. |...-+ +-..+|-.+..-+.... |.+
T Consensus 172 ~~CyN~DGGFG~~pGaESHagqifcCvgaLai~~~---------L~~vd~--d~lgwwlceRQ~~sGGL--NGR------ 232 (329)
T KOG0366|consen 172 LSCYNFDGGFGCRPGAESHAGQIFCCVGALAITGK---------LHLVDR--DLLGWWLCERQLPSGGL--NGR------ 232 (329)
T ss_pred HhhcccCCCcCCCCCcccccceehhhHHHHHHccc---------hhhcCH--HHHHHHHHhccCCCCCC--CCC------
Confidence 88653210111 1111111112 4444442 221111 12346643321000000 111
Q ss_pred CCCCCCcchhhHHHHHHHHHhhcCC--c-chhHHHHHHHhccc-CCCCccch----hh---HHHHHHHHHHH
Q psy742 344 LPYKYDAINIETTAYALLVYVSRQE--L-LTDPIVKWLNSQRL-TDGGWAST----QD---TAMAMKALIEY 404 (713)
Q Consensus 344 ~~~~~~s~~VEtTAYALLa~l~~~~--~-~a~~Iv~WL~~Qrn-~~GGF~ST----QD---TvvALqALa~Y 404 (713)
|. .-.||--+=++|-++...++ . .-+++.+++..-|. ..|||+-- -| |+.++-+|+-.
T Consensus 233 -pe--KlpDVCYSwWvlsSL~iigrl~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLl 301 (329)
T KOG0366|consen 233 -PE--KLPDVCYSWWVLSSLAIIGRLHWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLL 301 (329)
T ss_pred -cc--cCcchhhHHHHHhHHHHhhhhhhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhh
Confidence 11 11233333345544444454 3 77889999877665 89999853 23 78888888753
No 50
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=84.47 E-value=1.5 Score=32.90 Aligned_cols=32 Identities=31% Similarity=0.517 Sum_probs=24.9
Q ss_pred hhHHHHHHHhcccCCCCccch----hh---HHHHHHHHH
Q psy742 371 TDPIVKWLNSQRLTDGGWAST----QD---TAMAMKALI 402 (713)
Q Consensus 371 a~~Iv~WL~~Qrn~~GGF~ST----QD---TvvALqALa 402 (713)
..++++||.+.|+.+|||... -| |..|+.||+
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~ 41 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALS 41 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHH
Confidence 467999999999999999865 23 666766664
No 51
>KOG0497|consensus
Probab=83.50 E-value=2.4 Score=49.69 Aligned_cols=97 Identities=22% Similarity=0.192 Sum_probs=63.6
Q ss_pred ccccchhh----------hhhhHH---hhhhhccCCCHHHHHHHHHHHHhccCCCcceeecc--ccccccccccCCCCCC
Q psy742 164 STLKMLLW----------YSCLLC---LYIWETLMLPLQVITQAVSWVLDHQTPDGSFYETT--WLVDRKVNSSLNWPND 228 (713)
Q Consensus 164 i~~P~gtW----------L~TAfV---F~qa~~~~ID~~~I~~ai~WL~~~Q~~dG~F~e~g--~v~h~~m~g~~~Gg~~ 228 (713)
+++|+|.| . |=|. +.-+.+.+=+-..+.+|+.+|++.|++||++.|.- -..++-.+ -
T Consensus 601 ~Q~~DGSWyGsWgvCFtY~-t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GGWgEs~lscp~~~Yi~----~--- 672 (760)
T KOG0497|consen 601 LQLPDGSWYGSWGVCFTYG-TWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGGWGESYLSCPEKRYIP----L--- 672 (760)
T ss_pred cCCCCCcccchhhHHHHHH-HHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCCCccccccCccccccc----c---
Confidence 46788733 4 5455 44444443336789999999999999999998854 22222221 1
Q ss_pred CcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHHh
Q psy742 229 DVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERN 273 (713)
Q Consensus 229 ~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~ 273 (713)
.++.+.+.-|++++++|+.++..+. .+..+.||.++|-+.
T Consensus 673 ~gn~s~vv~T~wAlm~Li~~~q~~r-----d~~P~hr~ak~lins 712 (760)
T KOG0497|consen 673 EGNKSNVVQTAWALMALIMAGQAER-----DPLPLHRAAKVLINS 712 (760)
T ss_pred ccccccchhHHHHHHHHHhcCCccc-----ccchHHHHHHHHHhc
Confidence 1145678899999999998875221 123468888887764
No 52
>KOG1366|consensus
Probab=77.47 E-value=3 Score=53.62 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHH
Q psy742 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIK 268 (713)
Q Consensus 189 ~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~ 268 (713)
..|+.++...+..+++||+|.-.|. + ...++.||||||+=.|.+|+++.. + ....+.+|+.
T Consensus 971 ~~l~~GyqrqL~yk~~DgSySaFg~-----~----------~~~~stWLtafvlr~f~~a~~~i~-i---d~~~i~~a~~ 1031 (1436)
T KOG1366|consen 971 KFLEQGYQRQLTYKRADGSYSAFGS-----S----------DRSGSTWLTAFVLRVFSQAKEYIF-I---DPNVITQALN 1031 (1436)
T ss_pred HHHHHHHHHHHhhhccCCChhhhcC-----C----------CCcccHHHHHHHHHHhhhccCceE-e---cHHHHHHHHH
Confidence 4577788888888899999988653 0 034578999999999999986442 2 2367899999
Q ss_pred HHHHhh
Q psy742 269 WLERNL 274 (713)
Q Consensus 269 yLe~~~ 274 (713)
||..+-
T Consensus 1032 wl~~~Q 1037 (1436)
T KOG1366|consen 1032 WLSQQQ 1037 (1436)
T ss_pred HHHHhh
Confidence 999874
No 53
>PLN02710 farnesyltranstransferase subunit beta
Probab=75.66 E-value=33 Score=38.99 Aligned_cols=144 Identities=14% Similarity=0.190 Sum_probs=77.1
Q ss_pred cCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhhccCC-CCh--HHHHHHH----HHHHhcCCc-----
Q psy742 232 FRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDF-GDP--YEVAIVA----YALRLSKAT----- 299 (713)
Q Consensus 232 ~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~-~~~--YtlAl~a----YALaLa~~~----- 299 (713)
....|++=|++.+|.=-++ .+. ....++.++||.+--..-..+ +.+ .+-...+ -+|.+.++.
T Consensus 69 a~r~~~~Yw~L~sL~lLg~---~l~---~~~~~~ii~~l~~cQ~~dGGFgg~pg~~~hl~~TY~Av~~L~iLg~~~~l~~ 142 (439)
T PLN02710 69 ANRPWLCYWILHSIALLGE---SLD---DELENDTIDFLSRCQDPNGGYGGGPGQLPHLATTYAAVNTLVTIGGERALSS 142 (439)
T ss_pred hhhHHHHHHHHHHHHHhCC---ccc---HHHHHHHHHHHHHhcCCCcCCCCCCCCCccHHHHHHHHHHHHHcCCchhhcc
Confidence 3568999999988853221 121 134577889998853211111 111 1111111 235555543
Q ss_pred -cHHHHHHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhH--HHHHHHHHhhcCCc-chhHHH
Q psy742 300 -IAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIET--TAYALLVYVSRQEL-LTDPIV 375 (713)
Q Consensus 300 -~~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEt--TAYALLa~l~~~~~-~a~~Iv 375 (713)
+++.+.+-|.+....+|++.. ... .-.++.. .|.+.+.++..-.. ....++
T Consensus 143 Idr~~l~~fl~s~q~~dGgF~~--~~~-----------------------gE~D~R~tYcAlail~LL~~l~~~~~e~~~ 197 (439)
T PLN02710 143 INREKLYTFLLRMKDPSGGFRM--HDG-----------------------GEMDVRACYTAISVASLLNILDDELVKGVG 197 (439)
T ss_pred cCHHHHHHHHHHcCCCCCCccc--CCC-----------------------CCCCcCCcHHHHHHHHHhCcCchhhHHHHH
Confidence 345667777766655554321 100 0011111 23445555543223 678999
Q ss_pred HHHHhcccCCCCccch----hhHHHHHHHHHHHHH
Q psy742 376 KWLNSQRLTDGGWAST----QDTAMAMKALIEYTN 406 (713)
Q Consensus 376 ~WL~~Qrn~~GGF~ST----QDTvvALqALa~Ya~ 406 (713)
+||.+.|++.|||... .|+..+.=|++..+.
T Consensus 198 ~~I~scQ~~dGGF~g~P~~EaH~gyTfcavAsL~L 232 (439)
T PLN02710 198 DYILSCQTYEGGIGGEPGAEAHGGYTFCGLAAMIL 232 (439)
T ss_pred HHHHHhCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Confidence 9999999999999965 355555555554444
No 54
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=72.39 E-value=6.6 Score=41.98 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhccCCCcceeecc
Q psy742 188 LQVITQAVSWVLDHQTPDGSFYETT 212 (713)
Q Consensus 188 ~~~I~~ai~WL~~~Q~~dG~F~e~g 212 (713)
.+-+.++++||++-|.+||+|...-
T Consensus 66 ~~A~~rgld~LL~aQypnGGWPQf~ 90 (290)
T TIGR02474 66 RDAARKGIEYLLKAQYPNGGWPQFY 90 (290)
T ss_pred HHHHHHHHHHHHhhhCCCCCcCccc
Confidence 4679999999999999999997644
No 55
>KOG0367|consensus
Probab=72.16 E-value=11 Score=40.12 Aligned_cols=87 Identities=17% Similarity=0.163 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHH
Q psy742 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIK 268 (713)
Q Consensus 189 ~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~ 268 (713)
..+++.++||+.+|..+|+|.-.. ....=|-|..+-+..-+ +-++... ...++-.+
T Consensus 228 ~~~erlirWli~RQ~~sgGfqGR~--------------------NKp~DTCYaFWigasLk-lL~~~~~---~d~~~lr~ 283 (347)
T KOG0367|consen 228 SKVERLIRWLIQRQVSSGGFQGRT--------------------NKPVDTCYAFWIGASLK-LLDADWL---IDKQVLRK 283 (347)
T ss_pred cCHHHHHHHHHHHhhccCCcCCCC--------------------CCCchhHHHHHHHHHHH-HccchHh---hhHHHHHH
Confidence 449999999999999999985421 11113556555443222 2222211 11223335
Q ss_pred HHHHhhhhc--------cCCCChHHHHHHHHHHHhcCCc
Q psy742 269 WLERNLRLL--------KDFGDPYEVAIVAYALRLSKAT 299 (713)
Q Consensus 269 yLe~~~~~~--------~~~~~~YtlAl~aYALaLa~~~ 299 (713)
||-..-+.+ .+..|.|--++..+|||+.+.+
T Consensus 284 fll~~Q~~~iGGFsK~P~~~pD~~HsylG~~alal~ee~ 322 (347)
T KOG0367|consen 284 FLLSTQDKLIGGFSKWPEEDPDLLHSYLGLAALALLEEK 322 (347)
T ss_pred HHHHhhhhhcCcccCCCccCchHHHHHHHHHHHHHhcCC
Confidence 555543321 1344788888888899887654
No 56
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=69.94 E-value=13 Score=42.72 Aligned_cols=184 Identities=20% Similarity=0.258 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHhccCCCcceeeccc-cccccccccCCCCCCC--cccCcceehHHHHHHHHhcccccCCCCCchhHHHH
Q psy742 188 LQVITQAVSWVLDHQTPDGSFYETTW-LVDRKVNSSLNWPNDD--VKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQS 264 (713)
Q Consensus 188 ~~~I~~ai~WL~~~Q~~dG~F~e~g~-v~h~~m~g~~~Gg~~~--~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~ 264 (713)
...+..+++|+...|+..|+|..... ..|- |...+..+... ...+-+..|+-+.++|.....+...+. ..-++
T Consensus 280 ~~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a-~~~~L~~~~~~~~~~~s~adct~~~~~~l~a~~~yl~~~~---~~~i~ 355 (517)
T COG1657 280 LPNFELGLDWVLYMQNKLGGLAVYEDRNLHA-WLRLLPPAEVKAMVDPSTADCTHRVVLALAALNAYLEAYD---GQPIE 355 (517)
T ss_pred hhhHHhhhhHhhhcccccCceeeeccccccH-HHhhCCHhhccccccCCcccCCCccHHHHhhhhhcccccc---CCccc
Confidence 35567799999999999999877542 2222 21122222111 011235678888888876654333221 12468
Q ss_pred HHHHHHHHhhhhccCC-C-----ChHHHHHHHHHHHhcCCcc-----HHHHHHHHHHhhhccCCceeecCCCCCCCCCCc
Q psy742 265 KAIKWLERNLRLLKDF-G-----DPYEVAIVAYALRLSKATI-----AEAAFGILTQHARSEGGLTYWGKEPVPAPPSKI 333 (713)
Q Consensus 265 kA~~yLe~~~~~~~~~-~-----~~YtlAl~aYALaLa~~~~-----~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~ 333 (713)
+|+.||-+.-..-..+ + -.|+-++..++|++.+.++ ..++..-|......++| |...-...
T Consensus 356 ~a~e~LL~~Q~~~GsW~g~w~v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~G---w~e~~~~~----- 427 (517)
T COG1657 356 RALEWLLSDQEPDGSWYGRWGVCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGG---WGEAKEAI----- 427 (517)
T ss_pred HHHhhhhhhccccCceeeEEEEEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCC---cccccccc-----
Confidence 9999988875321000 0 4688899999999999776 12444555444443332 44321100
Q ss_pred cCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc---chhHHHHHHHhcccCCCCccc
Q psy742 334 ENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL---LTDPIVKWLNSQRLTDGGWAS 390 (713)
Q Consensus 334 ~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~---~a~~Iv~WL~~Qrn~~GGF~S 390 (713)
..++|.- . .+.-+--|++||..++..... ...|..+-|.++|...|-|.-
T Consensus 428 --~~~~~~~----t-~~sl~~~~~wal~~~~~a~~~~~~~i~~~~~~~~~~~~~~g~~~~ 480 (517)
T COG1657 428 --SDPVYTG----T-ESSLLVQTNWALIALLTALEPNQEAIKPGINLLVSDQEPDGSWRE 480 (517)
T ss_pred --ccccccc----c-cchhhcchhHHHHHHHHhcccchhhhcccccccccCcCCCCcccc
Confidence 0111110 0 233344577999998876543 456778888888888777763
No 57
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=63.87 E-value=13 Score=29.18 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=28.8
Q ss_pred CCceeEEEEEEEeeccCCCCccceEEEEEecCcceeecccch
Q psy742 500 NQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKL 541 (713)
Q Consensus 500 ~~~~~~l~vC~~~~~~~~~~~s~MaiveV~lpSGf~~~~~~L 541 (713)
.++.+.+++.++ |.+.....+..|-|. ||+|+.....++
T Consensus 10 ~Gd~v~Yti~v~--N~g~~~a~~v~v~D~-lP~g~~~v~~S~ 48 (53)
T TIGR01451 10 IGDTITYTITVT--NNGNVPATNVVVTDI-LPSGTTFVSNSV 48 (53)
T ss_pred CCCEEEEEEEEE--ECCCCceEeEEEEEc-CCCCCEEEeCcE
Confidence 467788877777 555455677777776 999999887664
No 58
>PLN02592 ent-copalyl diphosphate synthase
Probab=60.35 E-value=11 Score=45.88 Aligned_cols=64 Identities=17% Similarity=0.339 Sum_probs=44.3
Q ss_pred HHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHH
Q psy742 191 ITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWL 270 (713)
Q Consensus 191 I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yL 270 (713)
.-+.++||+++|.+||+|...+.. . ..+.+.-|+=.++||..-. .. ...++|++.||
T Consensus 117 FP~~~~wIl~nQ~~DGsWG~~~~~----~-----------~~D~ll~TLAcvlAL~~w~-----~~---~~~i~rGl~fi 173 (800)
T PLN02592 117 FPSSLQWIANNQLSDGSWGDAYLF----S-----------AHDRLINTLACVVALKSWN-----LH---PEKCEKGMSFF 173 (800)
T ss_pred CHHHHHHHHHccCCCCCCCCCCCc----c-----------hHHHHHhHHHHHHHHHHhh-----cc---HHHHHHHHHHH
Confidence 457999999999999998763210 0 1233556778888885422 11 24679999999
Q ss_pred HHhhhhc
Q psy742 271 ERNLRLL 277 (713)
Q Consensus 271 e~~~~~~ 277 (713)
++++..+
T Consensus 174 ~~nl~~~ 180 (800)
T PLN02592 174 RENICKL 180 (800)
T ss_pred HHHHHHh
Confidence 9998544
No 59
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.15 E-value=18 Score=38.88 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=31.7
Q ss_pred HHHHHHHhhcCCc-chhHHHHHHHhcccCCCCccchh-------hHHHHHHHHHH
Q psy742 357 AYALLVYVSRQEL-LTDPIVKWLNSQRLTDGGWASTQ-------DTAMAMKALIE 403 (713)
Q Consensus 357 AYALLa~l~~~~~-~a~~Iv~WL~~Qrn~~GGF~STQ-------DTvvALqALa~ 403 (713)
|-.+++++.--+. ..+..+.||.+++|+.|||+.-- -|..||-||+-
T Consensus 161 al~ilsllg~~~~~~~e~~vdyl~kCqnyeGGFg~~p~aEaHag~tFcalaalal 215 (342)
T COG5029 161 ALSILSLLGDLDKELFEGAVDYLKKCQNYEGGFGLCPYAEAHAGYTFCALAALAL 215 (342)
T ss_pred HHHHHHHHhhcchhhhHHHHHHHHHhhccCCcccCCCchhhccchHHHHHHHHHH
Confidence 3445555531122 78899999999999999999753 35556655553
No 60
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=49.79 E-value=1.1e+02 Score=25.60 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=32.7
Q ss_pred ccceeEeeeeeEEEE------EEEEEEeeCCCEEEEeccCCCccceeeE-EeeCCcccccccccEEEEEEEEe---ccee
Q psy742 15 AGQENMQSTIRSFAV------SLSAEMAPSATIVVYNVGRNGDVIADSL-TFPVNGISRNNVNATVVFLPIVP---VHLG 84 (713)
Q Consensus 15 ~~~~~~~~~~~~f~~------~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~V~F~I~p---~~lG 84 (713)
.+|+.+++++++.-- +++++++.-.|..+... .+++ .++.++ .+.+.|.|.| ...|
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~-------~~~~~~l~pG~-------s~~~~~~V~vp~~a~~G 67 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSAS-------PASVPSLPPGE-------SVTVTFTVTVPADAAPG 67 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---E-------EEEE--B-TTS-------EEEEEEEEEE-TT--SE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCC-------ccccccCCCCC-------EEEEEEEEECCCCCCCc
Confidence 456666666555433 55555555555552211 1122 344444 7788888885 2468
Q ss_pred eEEEEEEEE
Q psy742 85 DIDVTVTAS 93 (713)
Q Consensus 85 ~i~I~V~A~ 93 (713)
.-.|+++|.
T Consensus 68 ~y~v~~~a~ 76 (78)
T PF10633_consen 68 TYTVTVTAR 76 (78)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEEE
Confidence 888888875
No 61
>PF10569 Thiol-ester_cl: Alpha-macro-globulin thiol-ester bond-forming region; InterPro: IPR019565 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ]. This short highly conserved region of proteinase-binding alpha-macro-globulins contains the cysteine and a glutamine of a thiol-ester bond that is cleaved at the moment of proteinase binding, and mediates the covalent binding of the alpha-macro-globulin to the proteinase. The GCGEQ motif is highly conserved. ; PDB: 2B39_B 2PN5_A 4ACQ_C 1HZF_A 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=49.32 E-value=7.6 Score=27.23 Aligned_cols=11 Identities=18% Similarity=0.002 Sum_probs=8.1
Q ss_pred Cccccccccch
Q psy742 159 NSSSISTLKML 169 (713)
Q Consensus 159 ~l~sLi~~P~g 169 (713)
|+++||++|+|
T Consensus 1 ~l~~Li~~P~G 11 (31)
T PF10569_consen 1 NLDSLIRYPYG 11 (31)
T ss_dssp TGGGGSSS--S
T ss_pred CHHHHHhcCCC
Confidence 58999999998
No 62
>KOG0367|consensus
Probab=47.83 E-value=1e+02 Score=33.18 Aligned_cols=102 Identities=21% Similarity=0.326 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHhcCCccHHHHHHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHH
Q psy742 283 PYEVAIVAYALRLSKATIAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLV 362 (713)
Q Consensus 283 ~YtlAl~aYALaLa~~~~~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa 362 (713)
.|-.+-..|-|---.--+.+.+++-+++...-++|.. ..+ +...++-+.---.+|.+|+-
T Consensus 158 vYcA~aI~ymLd~~s~iD~ek~~~yI~~~q~YdgGfg---~~p-----------------g~EsHgG~TfCAlAsL~L~~ 217 (347)
T KOG0367|consen 158 VYCAVAICYMLDFWSGIDKEKLIGYIRSSQRYDGGFG---QHP-----------------GGESHGGATFCALASLALMG 217 (347)
T ss_pred HHHHHHHHHHhccccccCHHHHHHHHHHhhccccccc---cCC-----------------CCCCCcchhHHHHHHHHHHh
Confidence 3555555566653333456678887777766666532 110 11112234445566777777
Q ss_pred HhhcCCc----chhHHHHHHHhcccCCCCccc----hhhHHHHHHHHHHH
Q psy742 363 YVSRQEL----LTDPIVKWLNSQRLTDGGWAS----TQDTAMAMKALIEY 404 (713)
Q Consensus 363 ~l~~~~~----~a~~Iv~WL~~Qrn~~GGF~S----TQDTvvALqALa~Y 404 (713)
.+--+.. ..+.+.|||.+.|-..|||-- .-||++|.--++..
T Consensus 218 ~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR~NKp~DTCYaFWigasL 267 (347)
T KOG0367|consen 218 KLIPEELSNTSKVERLIRWLIQRQVSSGGFQGRTNKPVDTCYAFWIGASL 267 (347)
T ss_pred hhhhhhhccccCHHHHHHHHHHHhhccCCcCCCCCCCchhHHHHHHHHHH
Confidence 7633332 578999999999988999964 35999987766643
No 63
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=45.31 E-value=95 Score=33.92 Aligned_cols=76 Identities=25% Similarity=0.291 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHH
Q psy742 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIK 268 (713)
Q Consensus 189 ~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~ 268 (713)
..|.+.+++|+++|++||.|.. +.-|+-++=||..++.. ..+..-.-.++++
T Consensus 215 ~~i~~~~~kIl~~q~~~G~~GN------------------------iySTglAmQAL~~~~~~----~~~~~w~C~k~~~ 266 (326)
T PF01122_consen 215 QAIRSLVEKILSQQKPNGLFGN------------------------IYSTGLAMQALSVSPSP----PSESEWNCQKALD 266 (326)
T ss_dssp HHHHHHHHHHHHTB-TTS-BSS------------------------TTTHHHHHHHHTT-SS-----SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcccc------------------------hhhHHHHHHHHhcCCCC----CcchhhHHHHHHH
Confidence 4566777778889999999732 44689999999877631 1111234678888
Q ss_pred HHHHhhhhccCCCChHHHHHHHHHH
Q psy742 269 WLERNLRLLKDFGDPYEVAIVAYAL 293 (713)
Q Consensus 269 yLe~~~~~~~~~~~~YtlAl~aYAL 293 (713)
.+.++++.- .|++|-+.|-+.=||
T Consensus 267 ~ll~~i~~G-~F~nP~a~aQiLPaL 290 (326)
T PF01122_consen 267 ALLKEISQG-AFQNPMAIAQILPAL 290 (326)
T ss_dssp HHHHHHTTT-TT-SHHHHHHHHHHH
T ss_pred HHHHHhhcC-CCCCHHHHHHHHHHH
Confidence 888877543 355777666544443
No 64
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=40.46 E-value=28 Score=45.81 Aligned_cols=100 Identities=23% Similarity=0.274 Sum_probs=64.5
Q ss_pred hhhhhhHH---hhhhhcc--CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHH
Q psy742 170 LWYSCLLC---LYIWETL--MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLIT 244 (713)
Q Consensus 170 tWL~TAfV---F~qa~~~--~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVlia 244 (713)
-|| |||+ +.+|+.. .+++..++++..|+++.-+.-|.... .+|+ -..-..-||+|+.
T Consensus 1229 ~~l-taYa~~Fl~~A~e~g~~vp~~~~~~~~~~~~~~l~n~~~~~~------~~~~-----------l~~~~~~ay~L~~ 1290 (1621)
T COG2373 1229 PWL-TAYAVDFLLRAREQGYSVPSDALNQMLERLLEYLQNPGLAYA------DEVE-----------LRRRALQAYALYV 1290 (1621)
T ss_pred hhh-hHHHHHHHhhhhhcCcCCCHHHHHHHHHHHHHHHhCcCcccc------chhh-----------hhHHHHHHHHHHH
Confidence 899 9999 4567665 89999999999998775333231111 1110 1123467899999
Q ss_pred HHhcccccCCCCCchhHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHhcCCcc
Q psy742 245 LDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATI 300 (713)
Q Consensus 245 L~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~~~~YtlAl~aYALaLa~~~~ 300 (713)
|.+.++ ..+.....|+++++.... ++-++|..+-++++.++..
T Consensus 1291 lA~~~~----------~~~~~lr~~~d~~~~~~~---s~l~~a~laa~~~~~~d~~ 1333 (1621)
T COG2373 1291 LARNGD----------AALADLRGILDQSLDDWE---SPLALAQLAAALKLLGDKA 1333 (1621)
T ss_pred HhhcCC----------cccchhhhhccccccccc---ChhHHHHHHHHHHHHHHhh
Confidence 977653 122333455555444444 8888998888888887654
No 65
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=39.38 E-value=50 Score=35.41 Aligned_cols=23 Identities=17% Similarity=0.479 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhccCCCcceeec
Q psy742 189 QVITQAVSWVLDHQTPDGSFYET 211 (713)
Q Consensus 189 ~~I~~ai~WL~~~Q~~dG~F~e~ 211 (713)
+.+.+++++|+.-|-+||+|+-.
T Consensus 62 ~A~~kgl~ylL~aQypnGGWPQ~ 84 (289)
T PF09492_consen 62 EAFLKGLDYLLKAQYPNGGWPQF 84 (289)
T ss_dssp HHHHHHHHHHHHHS-TTS--BSE
T ss_pred HHHHHHHHHHHHhhCCCCCCCcc
Confidence 45789999999999999999764
No 66
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=36.50 E-value=2.1e+02 Score=27.45 Aligned_cols=52 Identities=17% Similarity=0.396 Sum_probs=36.9
Q ss_pred hhceeEEEEeccce-----eEeeeeeEEEE---------------EEEEEEeeCCCEEEEeccCCCccceeeEEeeCCc
Q psy742 5 KKKMMRIILLAGQE-----NMQSTIRSFAV---------------SLSAEMAPSATIVVYNVGRNGDVIADSLTFPVNG 63 (713)
Q Consensus 5 ~~~~~~~~~l~~~~-----~~~~~~~~f~~---------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (713)
.+|+.+|++|+|=- +--+.|..|-+ |++||+.+..+++++.. .|.++...++
T Consensus 42 ~skL~kv~QLTGfsDPvYaEA~v~v~q~DIvLDvllvNqT~~tLqNl~vElat~gdLklve~-------p~~~tL~P~~ 113 (140)
T PF07718_consen 42 SSKLNKVVQLTGFSDPVYAEAYVTVHQYDIVLDVLLVNQTNETLQNLTVELATLGDLKLVER-------PQPITLAPHG 113 (140)
T ss_pred hhhhccEEecccCCCCeEEEEEEEEEeeeEEEEEEEEeCChhhhhcEEEEEEecCCcEEccC-------CCceeeCCCc
Confidence 36889999999842 33344444443 99999999999999876 2456666665
No 67
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=35.64 E-value=65 Score=26.78 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=26.2
Q ss_pred CCCceeEEEEEEEeeccCCCCccceEEEEEecCcceeecc
Q psy742 499 RNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQ 538 (713)
Q Consensus 499 ~~~~~~~l~vC~~~~~~~~~~~s~MaiveV~lpSGf~~~~ 538 (713)
..|+.+.+.|.++ |.|.....|..|.|. ||+|+....
T Consensus 38 ~~Gd~v~ytitvt--N~G~~~a~nv~v~D~-lp~g~~~v~ 74 (76)
T PF01345_consen 38 NPGDTVTYTITVT--NTGPAPATNVVVTDT-LPAGLTFVS 74 (76)
T ss_pred cCCCEEEEEEEEE--ECCCCeeEeEEEEEc-CCCCCEEeC
Confidence 3566777766666 666556678777766 999998764
No 68
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=32.96 E-value=4e+02 Score=24.65 Aligned_cols=21 Identities=5% Similarity=-0.110 Sum_probs=16.2
Q ss_pred eEEEEeccceeEeeeeeEEEE
Q psy742 9 MRIILLAGQENMQSTIRSFAV 29 (713)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~f~~ 29 (713)
---+.++|++++++.+.+.=-
T Consensus 18 YFdL~~~P~q~~~l~v~i~N~ 38 (121)
T PF06030_consen 18 YFDLKVKPGQKQTLEVRITNN 38 (121)
T ss_pred eEEEEeCCCCEEEEEEEEEeC
Confidence 334788999999988887655
No 69
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=26.80 E-value=3.9e+02 Score=22.57 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=13.6
Q ss_pred cEEEEEEEEecceeeEEEEEEE
Q psy742 71 ATVVFLPIVPVHLGDIDVTVTA 92 (713)
Q Consensus 71 ~~~V~F~I~p~~lG~i~I~V~A 92 (713)
.+.+.|.+.+...|...|++.+
T Consensus 62 ~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 62 SETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp EEEEEEEEE-SS-CEEEEEEEE
T ss_pred EEEEEEEEEeCCCCeEEEEEEE
Confidence 5677777776677777666655
No 70
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.54 E-value=3.5e+02 Score=26.94 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=42.3
Q ss_pred eccceeEeeeeeEEEE------EEEEEE--eeCCCEEEEeccCCCccceeeEEeeCCcccccccccEEEEEEEEecceee
Q psy742 14 LAGQENMQSTIRSFAV------SLSAEM--APSATIVVYNVGRNGDVIADSLTFPVNGISRNNVNATVVFLPIVPVHLGD 85 (713)
Q Consensus 14 l~~~~~~~~~~~~f~~------~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~F~I~p~~lG~ 85 (713)
+..|++++..++++-. +|++.= =|.++|.+.++- ...++.-=.+| +...-.|.++|++.|.
T Consensus 34 ~v~g~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG~-----~s~~~~~i~pg------~~vsh~~vv~p~~~G~ 102 (181)
T PF05753_consen 34 LVEGEDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSGS-----LSASWERIPPG------ENVSHSYVVRPKKSGY 102 (181)
T ss_pred ccCCcEEEEEEEEEECCCCeEEEEEEECCCCCccccEeccCc-----eEEEEEEECCC------CeEEEEEEEeeeeeEE
Confidence 4568888888888866 443322 134677777652 22233333444 2567788889999998
Q ss_pred EEEEEE
Q psy742 86 IDVTVT 91 (713)
Q Consensus 86 i~I~V~ 91 (713)
.+++-.
T Consensus 103 f~~~~a 108 (181)
T PF05753_consen 103 FNFTPA 108 (181)
T ss_pred EEccCE
Confidence 887643
No 71
>PLN02279 ent-kaur-16-ene synthase
Probab=23.13 E-value=79 Score=38.75 Aligned_cols=66 Identities=21% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHH
Q psy742 193 QAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLER 272 (713)
Q Consensus 193 ~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~ 272 (713)
++++||+++|.+||+|... -.|..+ ..+.+.-|.=.++||..=.. .+.-+++.+.|+++
T Consensus 77 ~~~~wil~nQ~~dGsWg~~--~~~~~~-----------~~D~ll~TlAcvlAL~~w~~--------~~~~~~~gl~fi~~ 135 (784)
T PLN02279 77 ECVKWLLENQLEDGSWGLP--HDHPLL-----------VKDALSSTLASILALKKWGV--------GEEQINKGLQFIEL 135 (784)
T ss_pred HHHHHHHhcCCCCCCCCCC--CCCcch-----------hHHhhHHHHHHHHHHHHHhc--------CcccchhhHHHHHH
Q ss_pred hhhhccCCCC
Q psy742 273 NLRLLKDFGD 282 (713)
Q Consensus 273 ~~~~~~~~~~ 282 (713)
++..+. +
T Consensus 136 n~~~~~---d 142 (784)
T PLN02279 136 NSASVT---D 142 (784)
T ss_pred HHHhhc---c
No 72
>KOG0366|consensus
Probab=22.99 E-value=1.2e+02 Score=31.96 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=32.0
Q ss_pred chhHHHHHHHhcccCCCCccch-------hhHHHHHHHHHHHHHh
Q psy742 370 LTDPIVKWLNSQRLTDGGWAST-------QDTAMAMKALIEYTNR 407 (713)
Q Consensus 370 ~a~~Iv~WL~~Qrn~~GGF~ST-------QDTvvALqALa~Ya~~ 407 (713)
.-+.|+.|+.+-|+..|||.-- --|.-|+|-|+-|-+.
T Consensus 67 ~~eeiv~~v~~C~~~~GGfa~~~Ghd~hll~TlsAvQiL~~ydsi 111 (329)
T KOG0366|consen 67 SREEIVSFVLSCQHEDGGFAGCPGHDPHLLYTLSAVQILALYDSI 111 (329)
T ss_pred hHHHHHHHHHheecCCCCcCCCCCCChHHHHHHHHHHHHHHHccc
Confidence 6778999999999999999743 3599999999988653
No 73
>COG1470 Predicted membrane protein [Function unknown]
Probab=22.81 E-value=5.5e+02 Score=29.53 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=15.9
Q ss_pred cEEEEEEEE-e--cceeeEEEEEEEEec
Q psy742 71 ATVVFLPIV-P--VHLGDIDVTVTASSL 95 (713)
Q Consensus 71 ~~~V~F~I~-p--~~lG~i~I~V~A~s~ 95 (713)
.+.|...|+ | ...|+--|+++|.+.
T Consensus 443 ~~tV~ltI~vP~~a~aGdY~i~i~~ksD 470 (513)
T COG1470 443 SKTVSLTITVPEDAGAGDYRITITAKSD 470 (513)
T ss_pred cceEEEEEEcCCCCCCCcEEEEEEEeec
Confidence 566777776 3 456666666666655
No 74
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=22.81 E-value=2.4e+02 Score=33.61 Aligned_cols=124 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhccCCCcceeecccccccccc--c-cCCCCCCCcccCcceehHHHHHHHHhcccccCCCCC--chhH
Q psy742 187 PLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVN--S-SLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGA--RVSL 261 (713)
Q Consensus 187 D~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~--g-~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~--~~~~ 261 (713)
+++...+.+.||.+.|.+||.|.-.-+ ++-+.. . ++| .--++.+++++.+.-+..++... ..-.
T Consensus 312 ~~~~a~~~l~~l~~~q~~~G~~~~~~~-~dG~~~~~~~~~Q----------~D~~g~~l~al~~y~~~t~d~~~~~~~~~ 380 (616)
T TIGR01577 312 YHDRVDRFFRWAMQTQSRDGSWQQRYY-LNGRLAPLQWGLQ----------IDETGSILWAMDQHYRLTNDRAFLEEIWE 380 (616)
T ss_pred CHHHHHHHHHHHHHhhCcCCCcceEEe-cCCCCCCCCCCcc----------ccchhHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhhh--------------ccCCCChHHHHHHHHHHHhc-------CCccHHHHHHHHHHhhhccCCcee
Q psy742 262 AQSKAIKWLERNLRL--------------LKDFGDPYEVAIVAYALRLS-------KATIAEAAFGILTQHARSEGGLTY 320 (713)
Q Consensus 262 ~~~kA~~yLe~~~~~--------------~~~~~~~YtlAl~aYALaLa-------~~~~~~~al~~L~~~a~~~~~~~~ 320 (713)
.+.+|++|+.+.... -. .+|+.|+.-.||..| |.++.........+.-+..-...+
T Consensus 381 ~v~~a~~fl~~~~~~~l~~~~~~lWEer~G~---~~~t~a~~~aAL~~aa~lA~~lGd~~~a~~~~~~Ad~ik~~i~~~~ 457 (616)
T TIGR01577 381 SVQKAAQYLILFIDPETPLPCRDLWEEREGV---FTYTASAVYGGLDAAAAVADKLGEKRLAQNWKKAAEFIKRAVEERF 457 (616)
T ss_pred HHHHHHHHHHHhccCCCCCCCCccceecCCc---cCccHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhc
Q ss_pred ecCC
Q psy742 321 WGKE 324 (713)
Q Consensus 321 W~~~ 324 (713)
|..+
T Consensus 458 w~~~ 461 (616)
T TIGR01577 458 WLPE 461 (616)
T ss_pred cCCC
No 75
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=22.63 E-value=5.5e+02 Score=28.71 Aligned_cols=98 Identities=17% Similarity=0.115 Sum_probs=63.7
Q ss_pred EEEeccceeEeeeeeEEEEEEEEEEeeCC----------CEEEEeccCCCccceeeEEeeCCcccccccccEEEEEEEEe
Q psy742 11 IILLAGQENMQSTIRSFAVSLSAEMAPSA----------TIVVYNVGRNGDVIADSLTFPVNGISRNNVNATVVFLPIVP 80 (713)
Q Consensus 11 ~~~l~~~~~~~~~~~~f~~~v~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~F~I~p 80 (713)
.-|+..++.++.|---..|+++|.+.+.+ .+.|..-.+.|++-- --|.+| --++.+++.
T Consensus 112 a~L~~d~~~i~~~~~l~~v~~~v~f~~~~~~~~e~~~~~~~vvg~f~DdG~g~D---E~p~DG-------vFT~~l~l~- 180 (374)
T TIGR03503 112 AKLLNDGEPLKLPDFRDVVKLTVRFVSTNNAEDENFGADPIVVGEFEDDGEGLD---ERPGDG-------IFTGEFNLD- 180 (374)
T ss_pred EEEecCCEEeechhhhheEEEEEEEEecCCccccccccCCEEEEeeccCCccCC---CCCCCc-------eEEEEeecc-
Confidence 34677788888888888899998884421 222222222222200 012333 234555544
Q ss_pred cceeeEEEEEEEEecCCCceEEEEEEEecCCeEEEEeEe
Q psy742 81 VHLGDIDVTVTASSLIGRDTVTRKLHIIADGLPQHRHQS 119 (713)
Q Consensus 81 ~~lG~i~I~V~A~s~~~sD~V~~~L~V~peGv~~~~~~s 119 (713)
...|+-.++|+|.+....-..++.+.|.|.++..+..++
T Consensus 181 ~~~G~Y~~~v~~~n~vF~R~~~q~v~V~p~Pi~~~~~~~ 219 (374)
T TIGR03503 181 VAPGEYRPTYQSRNPVFLREVEQPVLVYPLPVSYTVIQS 219 (374)
T ss_pred CCCceEEEEEEEcCceEEEEEEEeEEEECCCeeEEEEcc
Confidence 678999999999998888888899999999887665443
No 76
>KOG0365|consensus
Probab=21.90 E-value=1.5e+02 Score=32.48 Aligned_cols=37 Identities=22% Similarity=0.400 Sum_probs=28.5
Q ss_pred hhHH-hhhhhcc-CCCHHHHHHHHHHHHhccCCCcceee
Q psy742 174 CLLC-LYIWETL-MLPLQVITQAVSWVLDHQTPDGSFYE 210 (713)
Q Consensus 174 TAfV-F~qa~~~-~ID~~~I~~ai~WL~~~Q~~dG~F~e 210 (713)
.||+ .+-|+-. -.+++..+.+.+||.+.|+=.|+|.-
T Consensus 202 s~YcA~svasllni~~deL~eG~~~wi~~CQtyEGG~GG 240 (423)
T KOG0365|consen 202 SAYCALSVASLLNIPMDELFEGTLDWIASCQTYEGGFGG 240 (423)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccccCCcCC
Confidence 5555 5555555 56678888999999999999999854
Done!