Query psy742
Match_columns 713
No_of_seqs 257 out of 848
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 17:48:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3prx_B Cobra venom factor; imm 100.0 2.4E-96 8E-101 922.3 42.7 567 14-636 824-1502(1642)
2 4acq_A Alpha-2-macroglobulin; 100.0 3.8E-88 1.3E-92 845.8 44.9 550 14-614 779-1442(1451)
3 2b39_A C3; thioester, immune d 100.0 7.4E-78 2.5E-82 765.9 61.1 569 14-636 838-1521(1661)
4 3cu7_A Complement C5; Mg domai 100.0 6.7E-80 2.3E-84 785.8 42.4 584 14-636 833-1537(1676)
5 2hr0_B Complement C3 alpha' ch 100.0 1.2E-79 4.1E-84 743.5 37.4 569 14-636 91-775 (915)
6 2pn5_A TEP1R, thioester-contai 100.0 1.8E-75 6E-80 732.7 57.6 555 14-635 676-1318(1325)
7 4fxk_B Complement C4-A alpha c 100.0 4.7E-63 1.6E-67 589.5 41.1 457 14-494 164-724 (767)
8 1hzf_A Complement factor C4A; 100.0 2.2E-40 7.5E-45 362.0 18.1 227 170-409 120-364 (367)
9 2wy7_A Complement C3D fragment 100.0 5E-39 1.7E-43 343.5 20.2 219 170-422 83-307 (310)
10 3hrz_C Cobra venom factor; ser 100.0 3.8E-38 1.3E-42 343.3 23.7 214 414-636 10-239 (379)
11 1qqf_A Protein (complement C3D 100.0 5.1E-37 1.7E-41 322.8 18.0 207 167-407 64-276 (277)
12 1edy_A Alpha 1-macroglobulin; 100.0 1.2E-28 3.9E-33 230.1 16.7 123 486-614 2-128 (134)
13 1ayo_A Alpha-2-macroglobulin; 100.0 1.4E-28 4.9E-33 228.3 15.8 122 486-614 2-127 (130)
14 4fxk_C Complement C4 gamma cha 99.9 1.4E-27 4.6E-32 249.7 15.0 134 499-636 8-147 (291)
15 2sqc_A Squalene-hopene cyclase 99.7 2.7E-16 9.4E-21 182.8 14.6 217 170-408 375-628 (631)
16 1w6k_A Lanosterol synthase; cy 99.6 1.1E-14 3.9E-19 171.4 18.5 224 169-409 453-724 (732)
17 3hrz_B Cobra venom factor; ser 99.5 1E-13 3.6E-18 143.2 15.9 133 15-157 93-237 (252)
18 2wy7_A Complement C3D fragment 98.4 1.9E-06 6.7E-11 91.2 14.9 190 158-404 5-250 (310)
19 1qqf_A Protein (complement C3D 98.4 3.7E-06 1.3E-10 87.5 14.9 158 189-403 38-233 (277)
20 1w6k_A Lanosterol synthase; cy 98.3 7.3E-06 2.5E-10 96.6 16.5 192 170-403 386-661 (732)
21 2sqc_A Squalene-hopene cyclase 98.3 1.3E-05 4.6E-10 93.0 17.6 197 170-404 311-566 (631)
22 4acq_A Alpha-2-macroglobulin; 98.2 4.1E-06 1.4E-10 105.7 13.7 106 189-311 983-1108(1451)
23 3es6_B Prolactin-inducible pro 98.2 1.4E-06 4.8E-11 79.0 6.1 90 14-118 18-112 (118)
24 3dss_B Geranylgeranyl transfer 98.2 1.5E-05 5.1E-10 85.3 15.1 184 170-406 47-251 (331)
25 2hr0_B Complement C3 alpha' ch 98.2 2.1E-05 7.2E-10 95.2 18.0 158 189-403 299-494 (915)
26 2h6f_B Protein farnesyltransfe 98.2 1E-05 3.5E-10 89.6 13.7 174 170-390 101-290 (437)
27 3dss_B Geranylgeranyl transfer 98.1 3.9E-05 1.3E-09 82.0 16.7 174 178-403 105-300 (331)
28 2b39_A C3; thioester, immune d 98.0 5.7E-05 1.9E-09 96.9 17.2 159 189-404 1046-1242(1661)
29 1hzf_A Complement factor C4A; 98.0 5.4E-05 1.9E-09 82.0 14.3 117 135-274 5-155 (367)
30 2pn5_A TEP1R, thioester-contai 97.9 5.7E-05 2E-09 94.9 15.4 160 189-403 872-1061(1325)
31 3cu7_A Complement C5; Mg domai 97.8 0.00013 4.5E-09 93.6 14.4 62 190-272 1048-1109(1676)
32 4fxk_B Complement C4-A alpha c 97.5 0.0004 1.4E-08 82.4 12.2 65 189-274 368-432 (767)
33 2h6f_B Protein farnesyltransfe 97.4 0.001 3.6E-08 73.5 13.7 165 190-404 74-262 (437)
34 2bb6_A TCII, TC II, transcobal 97.2 0.0013 4.6E-08 71.5 11.7 93 282-402 135-239 (414)
35 2pmv_A Gastric intrinsic facto 97.1 0.0024 8E-08 69.2 12.1 88 284-403 115-217 (399)
36 2icn_B Prolactin-inducible pro 97.1 0.0013 4.5E-08 59.3 8.3 78 15-107 19-117 (118)
37 1n4q_B Geranyltransferase type 96.8 0.0084 2.9E-07 65.0 12.9 199 170-407 48-283 (377)
38 3q7a_B Farnesyltransferase bet 96.7 0.013 4.3E-07 65.5 13.5 207 170-398 89-328 (520)
39 1n4q_B Geranyltransferase type 96.5 0.061 2.1E-06 58.2 16.7 175 174-403 125-331 (377)
40 3prx_B Cobra venom factor; imm 95.7 0.0017 5.7E-08 82.7 0.0 64 189-272 1030-1093(1642)
41 1r76_A Pectate lyase; A-helica 93.8 0.6 2E-05 50.6 13.4 189 190-389 82-334 (408)
42 2bb6_A TCII, TC II, transcobal 90.8 1.8 6.2E-05 47.0 12.7 55 353-407 136-194 (414)
43 1gxm_A Pectate lyase; mechanis 90.7 0.24 8.3E-06 52.2 5.5 52 189-249 97-148 (332)
44 3q7a_B Farnesyltransferase bet 88.2 1.8 6.1E-05 48.4 10.3 119 262-403 62-208 (520)
45 3dra_B Geranylgeranyltransfera 85.8 7.1 0.00024 42.1 13.1 33 370-402 192-231 (390)
46 3dra_B Geranylgeranyltransfera 84.8 5.1 0.00018 43.2 11.4 36 370-405 317-361 (390)
47 1r76_A Pectate lyase; A-helica 79.8 2.5 8.5E-05 45.8 6.5 74 189-274 175-258 (408)
48 2pmv_A Gastric intrinsic facto 77.6 4.4 0.00015 43.8 7.6 74 189-293 183-257 (399)
49 3pya_A ENT-copalyl diphosphate 64.6 5.8 0.0002 46.2 5.2 64 191-277 52-115 (727)
50 3sdr_A Alpha-bisabolene syntha 62.4 6.7 0.00023 46.4 5.3 65 191-278 103-167 (817)
51 3s9v_A Abietadiene synthase, c 59.9 6.7 0.00023 46.2 4.7 64 191-277 76-139 (785)
52 3p5p_A Taxadiene synthase; cla 58.9 6.7 0.00023 46.1 4.4 61 191-274 55-115 (764)
53 3idu_A Uncharacterized protein 41.2 1.9E+02 0.0065 25.7 10.2 51 53-110 64-121 (127)
54 1gxm_A Pectate lyase; mechanis 39.8 27 0.00091 36.7 4.8 74 194-273 36-109 (332)
55 2k9h_A Glycoprotein; hantaviru 39.2 9.3 0.00032 29.1 0.9 11 626-636 26-36 (57)
56 3pe9_A Fibronectin(III)-like m 35.7 1.3E+02 0.0043 25.6 7.7 58 53-114 31-93 (98)
57 2wgn_B Inhibitor of cysteine p 23.8 3.8E+02 0.013 23.9 9.2 42 451-494 90-131 (132)
58 3gt5_A N-acetylglucosamine 2-e 22.7 2.4E+02 0.0082 29.8 9.0 101 189-300 13-132 (402)
59 2l0d_A Cell surface protein; s 20.6 3.5E+02 0.012 23.6 8.0 23 71-93 62-85 (114)
60 2bgo_A Endo-B1,4-mannanase 5C; 20.3 4.9E+02 0.017 23.6 9.9 55 54-115 73-128 (140)
No 1
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=100.00 E-value=2.4e-96 Score=922.30 Aligned_cols=567 Identities=20% Similarity=0.330 Sum_probs=287.8
Q ss_pred eccceeEeeeeeEEEE-----EEEEEEeeCCCEEEEeccCCCccceeeEEeeCCcccccccccEEEEEEEEecceeeEEE
Q psy742 14 LAGQENMQSTIRSFAV-----SLSAEMAPSATIVVYNVGRNGDVIADSLTFPVNGISRNNVNATVVFLPIVPVHLGDIDV 88 (713)
Q Consensus 14 l~~~~~~~~~~~~f~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~F~I~p~~lG~i~I 88 (713)
+..||.+++++++|.. +|+|+|..++++|+.+.. +....|+++++.++ +++|+|+|+|+++|+++|
T Consensus 824 v~rGEq~~l~v~VfNy~~~~~~V~V~L~~s~~~~~~~~~--~~~~~q~v~v~a~~-------~~~v~f~i~p~~~G~~~i 894 (1642)
T 3prx_B 824 VVKNEQVEIRAILHNYVNEDIYVRVELLYNPAFCSASTK--GQRYRQQFPIKALS-------SRAVPFVIVPLEQGLHDV 894 (1642)
T ss_dssp EETTCCEEEEEEEEECSSSCEEEEEEECCCTTEEESCCS--SSCCEEEEEECSSE-------EEEEEEEEEECSCEEEEE
T ss_pred EecCCEEEEEEEEEcCCCCcEEEEEEEEcCCCeEeeccC--CCcceeEEEECCCC-------eEEEEEEEEEeecccEEE
Confidence 4589999999999987 899999999999997642 23367899999998 999999999999999999
Q ss_pred EEEEEec--CCCceEEEEEEEecCCeEEEEeEeeeeecccc---cceeeeeeeccCCCCccCCCCc--eEEEEecC----
Q psy742 89 TVTASSL--IGRDTVTRKLHIIADGLPQHRHQSILLDLSNR---AYVFQYLHVNVTETPIIPYDVD--RYYVYGSS---- 157 (713)
Q Consensus 89 ~V~A~s~--~~sD~V~~~L~V~peGv~~~~~~s~~ld~~~~---~~~~~~~~~~~p~~~~ip~s~~--~~~v~Gs~---- 157 (713)
+|+|.+. ..+|+|+++|+|+|||++++.+++.+|||++. ......+.+.+|.+ .+|++.. .++|.|+.
T Consensus 895 ~v~A~~~~~~~~D~v~k~L~V~peg~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~p~~-~vpgS~~~~~vsv~gd~lg~~ 973 (1642)
T 3prx_B 895 EIKASVQEALWSDGVRKKLKVVPEGVQKSIVTIVKLDPRAKGVGGTQLEVIKARKLDD-RVPDTEIETKIIIQGDPVAQI 973 (1642)
T ss_dssp EEEEEESSSSCEEEEEEEEEEECSSEEEEEEEEEEECTTTTCSSSEEEEEECCCCCCS-BCTTCCEEEEEEEEEEC----
T ss_pred EEEEEecCCCccceEEEEEEEecCCccEEEEEEEEEcCCcccCCcceeEEEecccccc-cCCCCcccEEEEEEcccchhh
Confidence 9999874 48899999999999999999999999999742 11233455666765 7899853 46777654
Q ss_pred -------CCccccccccch-------------------------------------------------------------
Q psy742 158 -------INSSSISTLKML------------------------------------------------------------- 169 (713)
Q Consensus 158 -------~~l~sLi~~P~g------------------------------------------------------------- 169 (713)
++|++||+||||
T Consensus 974 i~~~l~~~~L~~Ll~~PyGCgEQnms~~~P~v~v~~yL~~t~q~~~~~~e~~~ka~~~i~~Gyqr~l~yq~~DGsfs~w~ 1053 (1642)
T 3prx_B 974 IENSIDGSKLNHLIITPSGCGEQNMIRMAAPVIATYYLDTTEQWETLGINRRTEAVNQIVTGYAQQMVYKKADHSYAAFT 1053 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcccchhhHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhhccccccChhHHHHHHHHHHHHHHHHHHhcCCCCCeecCC
Confidence 489999999998
Q ss_pred -----hhhhhhHH---hhhhhcc-C-CCHHHHHHHHHHHHh-ccCCCcceeeccccccccccccCCCCCCCcccCcceeh
Q psy742 170 -----LWYSCLLC---LYIWETL-M-LPLQVITQAVSWVLD-HQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLT 238 (713)
Q Consensus 170 -----tWL~TAfV---F~qa~~~-~-ID~~~I~~ai~WL~~-~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LT 238 (713)
+|| |||| |.+|+++ + ||+++|+++++||.+ +|++||||.|.|+++|++|+||+.| .+++++||
T Consensus 1054 ~~~~stWL-TAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~~v~~~~m~Gg~~~-----~~~~~~lT 1127 (1642)
T 3prx_B 1054 NRASSSWL-TAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQG-----AEEEVYLT 1127 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccc-HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccccccchhccCCccC-----CCCcccch
Confidence 999 9999 9999999 8 999999999999997 8999999999999999999987754 24579999
Q ss_pred HHHHHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHhcCCccHHHHHHHHHHhhhccCCc
Q psy742 239 AHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGILTQHARSEGGL 318 (713)
Q Consensus 239 AyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~~~~YtlAl~aYALaLa~~~~~~~al~~L~~~a~~~~~~ 318 (713)
|||++||+|++.++.+.......+++||+.||+++++.+. ++|++||+||||+|+++++ ..++++|.+. +.
T Consensus 1128 A~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~~~~~~---~~Y~~Ai~aYAl~l~~~~~-~~~l~~l~~~-----~~ 1198 (1642)
T 3prx_B 1128 AFILVALLESKTICNDYVNSLDSSIKKATNYLLKKYEKLQ---RPYTTALTAYALAAADQLN-DDRVLMAAST-----GR 1198 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHhhhcCC---CHHHHHHHHHHHHhcCCch-HHHHHHHHhc-----CC
Confidence 9999999999876544333345689999999999998877 9999999999999999875 3566666543 46
Q ss_pred eeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-chhHHHHHHHhcccCCCCccchhhHHHH
Q psy742 319 TYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMA 397 (713)
Q Consensus 319 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-~a~~Iv~WL~~Qrn~~GGF~STQDTvvA 397 (713)
.||.... ..+.+||||||||||++.++++ .+.|||+||++|||++|||+||||||+|
T Consensus 1199 ~~W~~~~----------------------~~~~~VE~TaYaLLa~l~~~~~~~a~~iv~WL~~qr~~~Ggf~STQdTvva 1256 (1642)
T 3prx_B 1199 DHWEEYN----------------------AHTHNIEGTSYALLALLKMKKFDQTGPIVRWLTDQNFYGETYGQTQATVMA 1256 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCC----------------------CchHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhccCCCcccCcHHHHHH
Confidence 8996531 1368999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCcceeEEEEEEecCCCceeEEEEeccCcceeEeEEecCCCceEEEEEEeeeEEEEEEEEEEeeccc
Q psy742 398 MKALIEYTNRHRLRDVSYLTVSIEATALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIA 477 (713)
Q Consensus 398 LqALa~Ya~~~~~~~~~~l~v~V~~~~~~~~~~~~~I~~~N~~~~q~~~lp~~~g~v~v~a~G~G~a~~q~~~~Yn~~~~ 477 (713)
||||++|+.+....+..+++|+|...+. +..++|+||.+|++++|+.+| +.+++++|+++|+||+++|+.++||+...
T Consensus 1257 LqALa~Y~~~~~~~~~~~~~V~v~~~~~-~~~~~~~v~~~N~~l~q~~~l-~~~~~~~v~a~G~G~~~~q~~~~Yn~~~~ 1334 (1642)
T 3prx_B 1257 FQALAEYEIQMPTHKDLNLDITIELPDR-EVPIRYRINYENALLARTVET-KLNQDITVTASGDGKATMTILTFYNAQLQ 1334 (1642)
T ss_dssp --------------CCCCEEEEEECTTC-SSCEEEEESTTTSSCCEEEEE-SSCCCEEEEEEESSEEEEEEEEEEEECC-
T ss_pred HHHHHHHHHhcCcCCCccEEEEEEeCCC-CccEEEEECCcccceeEEEEc-cCCCeEEEEEEeeeEEEEEEEEEEeccCc
Confidence 9999999998764233577888775422 245689999999999999999 47899999999999999999999998543
Q ss_pred cccCCCCCCCeeEEEEeecc----CCCCceeEEEEEEEeeccCCCCccceEEEEEecCcceeecccchHHHhccCCCCcc
Q psy742 478 KFQTQPPVPAFALNTRANFH----GRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTRNVPNL 553 (713)
Q Consensus 478 ~~~~~~~~~~F~L~v~~~~~----~~~~~~~~l~vC~~~~~~~~~~~s~MaiveV~lpSGf~~~~~~L~~l~~~~~~~~i 553 (713)
+ .+..++.|+|+|++... +....++.++||++|++. ..+|||||||+|||||+++.++|++|.. ...+.|
T Consensus 1335 ~--~~~~~~~F~L~v~~~~~~~~~~~~~~~~~l~vc~~y~~~---~~s~Mai~dV~l~SGf~~~~~~l~~L~~-~~~~~i 1408 (1642)
T 3prx_B 1335 E--KANVCNKFHLNVSVENIHLNAMGAKGALMLKICTRYLGE---VDSTMTIIDISMLTGFLPDAEDLTRLSK-GVDRYI 1408 (1642)
T ss_dssp ------CCCSEEEEEEEECCCC-----CCEEEEEEEEEECSS---SCEEEEEEEEECCTTEEEBHHHHHHHHC-SSSEEC
T ss_pred c--ccCCCCCEEEEEEecccccCCcccccEEEEEEEEEecCC---CCCccEEEEEecCccceechhhHHHHhh-ccccce
Confidence 2 12346789999987542 123568999999999863 4689999999999999999999999974 334578
Q ss_pred eeEEEe-----CCEEEEEEecCCC-ceeEEEEEEEEEeeeeccccceeEEEEeccCCCceeEEEeecCc--cccccccc-
Q psy742 554 QRARFQ-----EQKVLFYFDYLDD-TETCINFTIERWFPVANMSRYLPIRVYDYYAPERFNETIFDALP--TYLLNICE- 624 (713)
Q Consensus 554 ~~~E~~-----d~~V~lYfd~l~~-~~~cv~f~~~~~~~V~~~~~pa~v~VYDYY~P~~~~~~~y~~~~--~~~~~~C~- 624 (713)
+|||++ +++|+||||++++ ++.||+|+++|+|+|+++ |||+|+|||||+|+++|.++|+... ..++++|+
T Consensus 1409 ~~~E~~~~~~~~~~vilYld~v~~~~~~c~~f~~~q~~~V~~~-qpa~v~vYDYY~p~~~~~~~Y~~~~~~~~l~~lC~~ 1487 (1642)
T 3prx_B 1409 SRYEVDNNMAQKVAVIIYLNKVSHSEDECLHFKILKHFEVGFI-QPGSVKVYSYYNLDEKCTKFYHPDKGTGLLNKICIG 1487 (1642)
T ss_dssp CCCCEETTEESCSEEEEEEEEECSSSCEEEEEEEEESCCCSSC-CCEEEEEEETTEEEEEEEEEEBTTBSSCCCCCEEET
T ss_pred eEEEeeccccCCCEEEEEEccCCCCCceEEEEEEEEEEEeccc-cceEEEEEeccCCCcceEEEEcCCcCcchHHhhcCC
Confidence 999997 8899999999997 579999999999999999 6999999999999999999998643 35788886
Q ss_pred ---ccCCCCCCCCCC
Q psy742 625 ---VCGSSQCPYCPI 636 (713)
Q Consensus 625 ---~C~~~~C~~c~~ 636 (713)
.|+++.|+.|..
T Consensus 1488 ~~C~Cae~~C~~~~~ 1502 (1642)
T 3prx_B 1488 NVCRCAGETCSSLNH 1502 (1642)
T ss_dssp TEEECCCSSCCCCCC
T ss_pred CeeEeeccCCCcccc
Confidence 378889988776
No 2
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=100.00 E-value=3.8e-88 Score=845.75 Aligned_cols=550 Identities=23% Similarity=0.356 Sum_probs=360.1
Q ss_pred eccceeEeeeeeEEEE-----EEEEEEeeCCCEEEEeccCCCccceeeEEeeCCcccccccccEEEEEEEEecceeeEEE
Q psy742 14 LAGQENMQSTIRSFAV-----SLSAEMAPSATIVVYNVGRNGDVIADSLTFPVNGISRNNVNATVVFLPIVPVHLGDIDV 88 (713)
Q Consensus 14 l~~~~~~~~~~~~f~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~F~I~p~~lG~i~I 88 (713)
+.+||.+++++++|-. +|+|+|..++++|+.+.+. ..|+++++.++ ++.|.|+|+|.++|.++|
T Consensus 779 v~rGE~~~l~~~V~N~~~~~~~v~V~l~~~~~~~~~~~~~----~~~~v~l~~~~-------~~~v~f~v~p~~~G~~~i 847 (1451)
T 4acq_A 779 VIRGEAFTLKATVLNYLPKCIRVSVQLEASPAFLAVPVEK----EQAPHCICANG-------RQTVSWAVTPKSLGNVNF 847 (1451)
T ss_dssp EESSSCEEEEEEEEECSSSCEEEEEEECCCTTEEEEESCS----CCCCEEECTTE-------EEEEEEEEEECSCEEEEE
T ss_pred EecCCEEEEEEEEEeccCccEEEEEEEEcCCCeEeecCCC----CceEEEECCCC-------eEEEEEEEEECccceEEE
Confidence 5689999999999987 9999999999999987532 46899999998 999999999999999999
Q ss_pred EEEEEecC----------------CCceEEEEEEEecCCeEEEEeEeeeeecccccceeeeeeeccCCCCccCCCCc-eE
Q psy742 89 TVTASSLI----------------GRDTVTRKLHIIADGLPQHRHQSILLDLSNRAYVFQYLHVNVTETPIIPYDVD-RY 151 (713)
Q Consensus 89 ~V~A~s~~----------------~sD~V~~~L~V~peGv~~~~~~s~~ld~~~~~~~~~~~~~~~p~~~~ip~s~~-~~ 151 (713)
+|+|.+.. .+|+++|+|+|+|||++++.+++.+||+++. .....+.+++|.+ .+|++.. .+
T Consensus 848 ~v~a~~~~~~~~~~~~~~~~~~~~~~D~v~k~L~V~peg~~~~~~~~~~l~~~g~-~~~~~~~~~~p~~-~vpgs~~~~v 925 (1451)
T 4acq_A 848 TVSAEALESQELCGTEVPSVPEHGRKDTVIKPLLVEPEGLEKETTFNSLLCPSGG-EVSEELSLKLPPN-VVEESARASV 925 (1451)
T ss_dssp EEEEEECTTCCCSSSSCCCCCSSCCCEEEEEEEEEECSSEEEEEECCEEECCSSE-EEEEEECCCCCTT-BCTTCCEEEE
T ss_pred EEEEEEccCccccccccccccccccceEEEEEEeccCCceeEEEEEEEEEecCCC-cceEEEeccCchh-cCCCCccEEE
Confidence 99998753 6899999999999999999999999999752 2345566777875 7898843 56
Q ss_pred EEEecC-----CCccccccccch---------------------------------------------------------
Q psy742 152 YVYGSS-----INSSSISTLKML--------------------------------------------------------- 169 (713)
Q Consensus 152 ~v~Gs~-----~~l~sLi~~P~g--------------------------------------------------------- 169 (713)
++.|+. +++++|++||||
T Consensus 926 sv~g~~~~~~~~~l~~L~~yPyGC~EQ~ms~~~P~l~~~~yL~~t~q~~~~~~~~a~~~i~~g~~~ll~~q~~dGgf~~f 1005 (1451)
T 4acq_A 926 SVLGDILGSAMQNTQNLLQMPYGCGEXNMVLFAPNIYVLDYLNETQQLTPEIKSKAIGYLNTGYQRQLNYKHYDGSYSTF 1005 (1451)
T ss_dssp EECCCCCCSTTTTGGGGCCCCCSSTTTTHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSS
T ss_pred EEeCcchHHHHHhHHHHHhCCCCchhhhhhhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhcCCCCCeeec
Confidence 676655 889999999997
Q ss_pred ----------hhhhhhHH---hhhhhcc-CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcc
Q psy742 170 ----------LWYSCLLC---LYIWETL-MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNI 235 (713)
Q Consensus 170 ----------tWL~TAfV---F~qa~~~-~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v 235 (713)
+|| |||| |.+|+++ .||+..|+++++||.++|++||||.+.|+++|++|+||+ ++++
T Consensus 1006 ~~~~~~~~~s~wl-TAyv~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~--------~~~~ 1076 (1451)
T 4acq_A 1006 GERYGRNQGNTWL-TAFVLKTFAQARAYIFIDEAHITQALIWLSQRQKDNGCFRSSGSLLNNAIKGGV--------EDEV 1076 (1451)
T ss_dssp TTGGGCCCCCHHH-HHHHHHHHHHHTTTSCCCTHHHHHHHHHHHHTEETTTEECCCCCCSCGGGCCSC--------SCHH
T ss_pred cCCCCCCCCchhH-HHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhcccCCcccccCcccchhhcCCC--------CCCc
Confidence 899 9999 8999999 999999999999999999999999999999999997543 3568
Q ss_pred eehHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhhccC---CCChHHHHHHHHHHHhcCCcc-HHHHHHHHHHh
Q psy742 236 SLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKD---FGDPYEVAIVAYALRLSKATI-AEAAFGILTQH 311 (713)
Q Consensus 236 ~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~---~~~~YtlAl~aYALaLa~~~~-~~~al~~L~~~ 311 (713)
.+|||||+||+|++.. . ...++++|++||+++++.+.. ..++|++|++||||+|+|+++ +..++++|++.
T Consensus 1077 ~lTAyvl~aL~~~g~~-----~-~~~~i~~A~~~L~~~~~~~~~~~~~~~~y~~AllAyAlal~g~~~~~~~~l~~L~~~ 1150 (1451)
T 4acq_A 1077 TLSAYITIALLEIPLT-----V-THPVVRNALFCLESAWKTAQEGDHGSHVYTKALLAYAFALAGNQDKRKEVLKSLNEE 1150 (1451)
T ss_dssp HHHHHHHHHHHHTTCC-----T-TCHHHHHHHHHHHHHHHHHTSSCSSSTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCC-----C-CCHHHHHHHHHHHHhhhhcccccccCChHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 8999999999998731 1 236899999999999887651 014999999999999999986 45699999999
Q ss_pred hhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcC------Cc-chhHHHHHHHhcccC
Q psy742 312 ARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ------EL-LTDPIVKWLNSQRLT 384 (713)
Q Consensus 312 a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~------~~-~a~~Iv~WL~~Qrn~ 384 (713)
+..+++..||.....+. +...++|+++ ..+.+||+|||||||++..+ +. .+.+|++||++|||+
T Consensus 1151 a~~~~~~~~W~~~~~~~-----~~~~~~~~~~----~~s~~vE~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~qr~~ 1221 (1451)
T 4acq_A 1151 AVKKDNSVHWERPQKPK-----APVGHFYEPQ----APSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQNA 1221 (1451)
T ss_dssp CCBCSSCBCCCCCCCSS-----SCSSSTTCCC----TTGGGGTHHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTTCCCT
T ss_pred hhccCCceecCCCCCCc-----cccccccccC----CchHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHcCCC
Confidence 99888889998654221 1223344443 35889999999999999985 45 899999999999999
Q ss_pred CCCccchhhHHHHHHHHHHHHHhcccCCcceeEEE-EEEecCCCceeEEEEeccCcceeEeEEecCCCceEEEEEEeeeE
Q psy742 385 DGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVS-IEATALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGY 463 (713)
Q Consensus 385 ~GGF~STQDTvvALqALa~Ya~~~~~~~~~~l~v~-V~~~~~~~~~~~~~I~~~N~~~~q~~~lp~~~g~v~v~a~G~G~ 463 (713)
+|||.|||||++|||||++|+.+....+ .+++|+ |... .+..++|+||.+|++++|+.+||..+++++|+++|+||
T Consensus 1222 ~Ggf~STQdTv~aL~ALa~Y~~~~~~~~-~~~~v~~v~~~--~~~~~~~~v~~~n~~~~q~~~l~~~~~~~~v~~~G~G~ 1298 (1451)
T 4acq_A 1222 QGGFSSTQDTVVALHALSKYGAATFTRT-GKAAQVTIQSS--GTFSSKFQVDNNNRLLLQQVSLPELPGEYSMKVTGEGC 1298 (1451)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHHHHCCSS-CCCCEEEEEES--SSCCEEECCCTTTTTBCEEEECCCSSSCEEEEEEESSC
T ss_pred CCCcccHHHHHHHHHHHHHHHHhcCCCC-CceEEEEEEcC--CCCcEEEEECCCccceEEEEEccCCCceEEEEEEEEEE
Confidence 9999999999999999999999876433 467777 6652 34556899999999999999999889999999999999
Q ss_pred EEEEEEEEEeeccccccCCCCCCCeeEEEEeeccC----CCCceeEEEEEEEeeccCCCCccceEEEEEecCcceeeccc
Q psy742 464 AILQMSVDYNVDIAKFQTQPPVPAFALNTRANFHG----RNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQ 539 (713)
Q Consensus 464 a~~q~~~~Yn~~~~~~~~~~~~~~F~L~v~~~~~~----~~~~~~~l~vC~~~~~~~~~~~s~MaiveV~lpSGf~~~~~ 539 (713)
+++|+.++||++.++ +.+.|+|+|++.... ..+.++.++||++|++. ...|||||+||+|||||+++++
T Consensus 1299 ~~lq~~~~Yn~~~~~-----~~~~f~l~v~~~~~~~~~~~~~~~~~l~vc~~~~~~--~~~s~Mai~dv~l~SGf~~~~~ 1371 (1451)
T 4acq_A 1299 VYLQTSLKYNILPEK-----EEFPFALGVQTLPQTCDEPKAHTSFQISLSVSYTGS--RSASNMAIVDVKMVSGFIPLKP 1371 (1451)
T ss_dssp EEEEEEEEEEECCC------------------------------------------------------------------
T ss_pred EEEEEEEEEeccCCC-----CCCceEEEEEEecCCCCccccccEEEEEEEEEecCC--CCCCCcEEEEEecccccccchh
Confidence 999999999997753 347899999864321 23457899999999753 3569999999999999999999
Q ss_pred chHHHhccCCCCcceeEEEeCCEEEEEEecCCCceeEEEEEEEEEeeeeccccceeEEEEeccCCCceeEEEeec
Q psy742 540 KLDAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIRVYDYYAPERFNETIFDA 614 (713)
Q Consensus 540 ~L~~l~~~~~~~~i~~~E~~d~~V~lYfd~l~~~~~cv~f~~~~~~~V~~~~~pa~v~VYDYY~P~~~~~~~y~~ 614 (713)
+|++|.. .+.++|+|+++++|+||||++++++.||+|+++|.|+|+++ |||+|+|||||+|+++|+++|++
T Consensus 1372 ~l~~l~~---~~~i~~~e~~~~~v~~Y~d~~~~~~~c~~f~~~~~~~V~~~-~pa~v~vYdYY~p~~~~~~~Y~~ 1442 (1451)
T 4acq_A 1372 TVKMLER---SNHVSRTEVSSNHVLIYLDKVSNQTLSLFFTVLQDVPVRDL-KPAIVKVYDYYETDEFAIAEYNA 1442 (1451)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred hHHHhhc---cCceeEEEEcCCEEEEEEecCCCCeEEEEEEEEEEEEeccc-ceeEEEEEeccCCCceEEEEECC
Confidence 9999864 35699999999999999999999899999999999999999 59999999999999999999985
No 3
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=100.00 E-value=7.4e-78 Score=765.94 Aligned_cols=569 Identities=21% Similarity=0.350 Sum_probs=470.1
Q ss_pred eccceeEeeeeeEEE------EEEEEEEeeCCCEEEEeccCCCccceeeEEeeCCcccccccccEEEEEEEEecceeeEE
Q psy742 14 LAGQENMQSTIRSFA------VSLSAEMAPSATIVVYNVGRNGDVIADSLTFPVNGISRNNVNATVVFLPIVPVHLGDID 87 (713)
Q Consensus 14 l~~~~~~~~~~~~f~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~F~I~p~~lG~i~ 87 (713)
+..||.+++++++|- ++|+|+|..++++|+.+.. +....|++++++++ ++.|+|+|+|.++|.++
T Consensus 838 v~~GD~~~i~~~V~N~~~~~~~~v~v~l~~~~~~~~~~~~--~~~~~~~v~v~a~~-------~~~v~f~i~p~~~G~~~ 908 (1661)
T 2b39_A 838 VVRNEQVEIRAILYNYREAENLKVRVELLYNPAFCSLATA--KKRHQQTITIPARS-------SVAVPYVIVPLKIGLHE 908 (1661)
T ss_dssp EESSCEEEEEEEEEECCTTCCEEEEEEECCCTTEECSSCS--SCCCEEEEEECTTC-------EEEEEEEEEECSCEEEE
T ss_pred EEeCCEEEEEEEEEcCCCCccEEEEEEEcCCCCeEeecCC--CCcceEEEEECCCC-------cEEEEEEEEEcccCeEE
Confidence 568999999999986 4899999999999987552 23367899999998 99999999999999999
Q ss_pred EEEEEEec--CCCceEEEEEEEecCCeE-EEEeEeeeeecccc---cceeeeeeeccCCCCccCCCCc--eEEEEecC--
Q psy742 88 VTVTASSL--IGRDTVTRKLHIIADGLP-QHRHQSILLDLSNR---AYVFQYLHVNVTETPIIPYDVD--RYYVYGSS-- 157 (713)
Q Consensus 88 I~V~A~s~--~~sD~V~~~L~V~peGv~-~~~~~s~~ld~~~~---~~~~~~~~~~~p~~~~ip~s~~--~~~v~Gs~-- 157 (713)
|+|+|.+. ..+|+|+++|+|.|||++ ++.+++.+|++++. ......+.+++|.+ .+|++.. .+.+.|+.
T Consensus 909 i~v~a~~~~~~~~D~v~~~L~V~p~g~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~p~~-~vp~s~~~~~vsv~g~~~~ 987 (1661)
T 2b39_A 909 VEVKAAVYNHFISDGVKKTLKVVPEGVRVNKTVAVRTLNPEHLGQGGVQREEVPAADLSD-QVPDTESETKILLQGTPVA 987 (1661)
T ss_dssp EEEEEEESSSSSCEEEEEEEEEECSSEEEEEEEEEEEECHHHHCSSSCEEEEECCCCCSS-BCTTCCCEEEEEEESSTTH
T ss_pred EEEEEEecCCCCCceEEEEEEEecCCeeEEEEEEEEEEeccccCCCcceEEEEeccCccc-cCCCCceeEEEEEecccch
Confidence 99999985 379999999999999986 45789999998732 22344566777876 7898843 45666754
Q ss_pred ---------CCccccccccch-----------------------------------------------------------
Q psy742 158 ---------INSSSISTLKML----------------------------------------------------------- 169 (713)
Q Consensus 158 ---------~~l~sLi~~P~g----------------------------------------------------------- 169 (713)
+++++|++||||
T Consensus 988 ~~l~~~~~~~~l~~L~~~PyGC~EQ~~s~~~P~~~~~~yL~~~~q~~~~~~~~~~~~~~~i~~g~~r~l~~q~~dGsfs~ 1067 (1661)
T 2b39_A 988 QMTEDAIDGERLKHLIQTPSGCGEQNMIGMTPTVIAVHYLDSTDQWEKFGLEKRQESLELIRKGYTQQLAFRQKSSAYAA 1067 (1661)
T ss_dssp HHHHHHSSTTTGGGSSSSCCCSTTGGGGGTHHHHHHHHHHHHHTCGGGSCSHHHHHHHHHHHHHHHHHHTTBCTTSCBCS
T ss_pred hhhhcccchhhhHHHhhcCCCchhhhhhhcccHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Confidence 249999999997
Q ss_pred -------hhhhhhHH---hhhhhcc-CCCHHHHHHHHHHHHh-ccCCCcceeeccccccccccccCCCCCCCcccCccee
Q psy742 170 -------LWYSCLLC---LYIWETL-MLPLQVITQAVSWVLD-HQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISL 237 (713)
Q Consensus 170 -------tWL~TAfV---F~qa~~~-~ID~~~I~~ai~WL~~-~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~L 237 (713)
+|| |||| |.+|+++ +||+++|+++++||.+ +|++||+|.+.++++|++|+|+..+. ...++.+
T Consensus 1068 w~~~~~s~wL-TAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~----~~~~~~l 1142 (1661)
T 2b39_A 1068 FQYRPPSTWL-TAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGFRDT----REKDVSL 1142 (1661)
T ss_dssp STTSCCCHHH-HHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHTBCTTSCBCCCSCCCCTTSCCCTTCC----TTSSHHH
T ss_pred cCCCCCchhh-hHHHHHHHHhhhhcccCCHHHHHHHHHHhhHhhCCCCCccccccceechhhcCCcccc----ccCcccc
Confidence 899 9999 9999999 9999999999999995 99999999999999999998654320 2236889
Q ss_pred hHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHhcCCccHHHHHHHHHHhhhccCC
Q psy742 238 TAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGILTQHARSEGG 317 (713)
Q Consensus 238 TAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~~~~YtlAl~aYALaLa~~~~~~~al~~L~~~a~~~~~ 317 (713)
||||++||+++++.+.+.......++.+|++||++++..+. ++|++|++||||+++|++ +..++++|++.+. +
T Consensus 1143 tAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~~~---~~y~~A~layAL~l~g~~-a~~~l~~L~~~~~---~ 1215 (1661)
T 2b39_A 1143 TAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRELR---RPYTVAIAAYALALLGKL-EGDRLTKFLNTAK---E 1215 (1661)
T ss_dssp HHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTTCC---SHHHHHHHHHHHHHTTCC-CHHHHHHHHHHSB---T
T ss_pred HHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhccC---CHHHHHHHHHHHHHcCCc-HHHHHHHHHhhcc---C
Confidence 99999999999865432222345688999999999987766 999999999999999998 7788888887654 3
Q ss_pred ceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-chhHHHHHHHhcccCCCCccchhhHHH
Q psy742 318 LTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-LTDPIVKWLNSQRLTDGGWASTQDTAM 396 (713)
Q Consensus 318 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-~a~~Iv~WL~~Qrn~~GGF~STQDTvv 396 (713)
..||.... +.+.+||+||||||+++..++. .+.++++||.+|||.+|||.|||||++
T Consensus 1216 ~~~W~~~~----------------------~~~~~vE~tayaLlall~~~~~~~~~~iv~wL~~qr~~~gg~~STqdT~~ 1273 (1661)
T 2b39_A 1216 KNRWEEPN----------------------QKLYNVEATSYALLALLARKDYDTTPPVVRWLNEQRYYGGGYGSTQATFM 1273 (1661)
T ss_dssp TTBCCCSS----------------------CHHHHHHHHHHHHHHHHHHTCTTTSHHHHHHHHHCCTBTTBBCSHHHHHH
T ss_pred CCCCCCCC----------------------CCcchHHHHHHHHHHHHhcCChhhHHHHHHHHHhcccCCCCcccchHHHH
Confidence 46886321 1367999999999999999888 999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCcceeEEEEEEecCCCceeEEEEeccCcceeEeEEecCCCceEEEEEEeeeEEEEEEEEEEeecc
Q psy742 397 AMKALIEYTNRHRLRDVSYLTVSIEATALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDI 476 (713)
Q Consensus 397 ALqALa~Ya~~~~~~~~~~l~v~V~~~~~~~~~~~~~I~~~N~~~~q~~~lp~~~g~v~v~a~G~G~a~~q~~~~Yn~~~ 476 (713)
||+||++|+.+.......+++|+|...+. +....++|+.+|.++.|++++| .++.++|+++|+|++++|+..+||++.
T Consensus 1274 Al~AL~~y~~~~~~~~~~~~~v~v~~~~~-~~~~~~~v~~~n~~~~~~~~~~-~~~~~~v~~~G~G~~~~~v~~~Y~~~~ 1351 (1661)
T 2b39_A 1274 VFQALAQYQKDVPDHKELNLDVSIQLPSR-NSAVRHRILWESASLLRSEETK-ENERFTVKAEGKGQGTLSVVTVYHAKL 1351 (1661)
T ss_dssp HHHHHHHHHHHSCCGGGCEECCEEBCSSS-SSCEECCEESSSSCSEEEECCS-CCCCEEEEECSSCCEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHcCcCCCCcEEEEEEeCCC-ccceEEEECCcCcceEEEEEec-CCCeEEEEEEeeEEEEEEEEEEEeccC
Confidence 99999999987753222466666654321 2346899999999889999886 578999999999999999999999987
Q ss_pred ccccCCCCCCCeeEEEEeeccC-------CCCceeEEEEEEEeeccCCCCccceEEEEEecCcceeecccchHHHhccCC
Q psy742 477 AKFQTQPPVPAFALNTRANFHG-------RNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTRN 549 (713)
Q Consensus 477 ~~~~~~~~~~~F~L~v~~~~~~-------~~~~~~~l~vC~~~~~~~~~~~s~MaiveV~lpSGf~~~~~~L~~l~~~~~ 549 (713)
++ ...+..|+|++++.... +.+..+.++||++|++. ..+||+|+||+|||||++++++|.++... .
T Consensus 1352 ~~---~~~~~~f~l~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~m~ivdv~lpsGfe~~~~~l~~l~~~-~ 1424 (1661)
T 2b39_A 1352 KG---KVSCKKFDLRVSIRPAPETVKKPQDAKGSMILDICTKYLGD---QDATMSILDISMMTGFSPDVEDLKTLSTG-V 1424 (1661)
T ss_dssp CT---TSSCBSEEEEEEEEECCTTSCCCTTCSCEEEEEEEEEECSS---SCBCSEEEEEECCTTEEECHHHHHHHHHS-S
T ss_pred Cc---ccCCCceEEEEEecccccccccccCCCcEEEEEEEEEecCC---CCCceEEEEEecCcCCccCHhHHHHHhhc-c
Confidence 53 23457899999864321 36788999999999753 45899999999999999999999998652 2
Q ss_pred CCcceeEEE----eCCEEEEEEecCCC-ceeEEEEEEEEEeeeeccccceeEEEEeccCCCceeEEEeecCc--cccccc
Q psy742 550 VPNLQRARF----QEQKVLFYFDYLDD-TETCINFTIERWFPVANMSRYLPIRVYDYYAPERFNETIFDALP--TYLLNI 622 (713)
Q Consensus 550 ~~~i~~~E~----~d~~V~lYfd~l~~-~~~cv~f~~~~~~~V~~~~~pa~v~VYDYY~P~~~~~~~y~~~~--~~~~~~ 622 (713)
...++|+|+ +|++|+||||++++ +..||.|+++|.++|+++ +|++|+|||||+|+++|+++|++.. ..++++
T Consensus 1425 ~~~~~~~E~~~~~~d~~v~~y~d~l~~~~~~~~~~~~~~~~~v~~~-~Pa~v~vydyY~p~~~~~~~Y~~~~~~~~l~~~ 1503 (1661)
T 2b39_A 1425 DRYISKYEMNRDSNKNTLIIYLDKVSHTVEDCLSFKVHQYFNVGLI-QPGAVKVYSYYNLDETCIRFYHPDKEDGMLSKL 1503 (1661)
T ss_dssp BCSCSEEEEESSSSSCEEEEEESCBCSSSCEEEEEEEEECSEEESC-CCEEEEEEETTCTTSEEEEEECCCSTTSTTSCC
T ss_pred ccceEEEEeeecCCCCEEEEEeccCCCCCceEEEEEEEEEeEcccc-CceEEEEEeccCCccceEEEEcCCccCchhhhc
Confidence 356899999 89999999999997 489999999999999998 5999999999999999999999753 357899
Q ss_pred cc----ccCCCCCCCCCC
Q psy742 623 CE----VCGSSQCPYCPI 636 (713)
Q Consensus 623 C~----~C~~~~C~~c~~ 636 (713)
|+ .|++++|+.|..
T Consensus 1504 C~~~~C~c~e~~c~~~~~ 1521 (1661)
T 2b39_A 1504 CHKDTCRCAEENCFMHHT 1521 (1661)
T ss_dssp CCHHHHHHTTTTTC----
T ss_pred CCCCceeeccCCCccccc
Confidence 95 368889999884
No 4
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=100.00 E-value=6.7e-80 Score=785.76 Aligned_cols=584 Identities=19% Similarity=0.300 Sum_probs=478.4
Q ss_pred eccceeEeeeeeEEEE-----EEEEEEeeCCCEEEEeccC---CC--ccceeeEEeeCCcccccccccEEEEEEEEecce
Q psy742 14 LAGQENMQSTIRSFAV-----SLSAEMAPSATIVVYNVGR---NG--DVIADSLTFPVNGISRNNVNATVVFLPIVPVHL 83 (713)
Q Consensus 14 l~~~~~~~~~~~~f~~-----~v~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~V~F~I~p~~l 83 (713)
+..||.+++++++|-. +|+|+|..++++|+.+... .+ ....|++++++++ ++.|+|+|+|.++
T Consensus 833 v~~GD~~~i~~~V~N~~~~~~~v~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~a~~-------~~~v~f~i~p~~~ 905 (1676)
T 3cu7_A 833 VVRGEQIQLKGTVYNYRTSGMQFCVKMSAVEGICTSESPVIDHQGTKSSKCVRQKVEGSS-------SHLVTFTVLPLEI 905 (1676)
T ss_dssp EETTCCEEEEEEEEECSSSCBCCCCEECCCTTEECSSCC----------CCCCCCBCTTE-------EEECCEEEEECSS
T ss_pred EEECcEEEEEEEEEcCCCCcEEEEEEEecCCCeEEeccccccccccccceeEEEEECCCC-------eEEEEEEEEEccc
Confidence 5689999999999987 8999999999999876531 00 1236788898888 9999999999999
Q ss_pred eeEEEEEEEEecCCCceEEEEEEEecCCeEEEEeEeeeeecccc--ccee-eeeeeccCCCCccCCCCc--eEEEEecC-
Q psy742 84 GDIDVTVTASSLIGRDTVTRKLHIIADGLPQHRHQSILLDLSNR--AYVF-QYLHVNVTETPIIPYDVD--RYYVYGSS- 157 (713)
Q Consensus 84 G~i~I~V~A~s~~~sD~V~~~L~V~peGv~~~~~~s~~ld~~~~--~~~~-~~~~~~~p~~~~ip~s~~--~~~v~Gs~- 157 (713)
|.++|+|+|.+..++|+++++|+|.|+|++++.+++.+|++++. .... ..+.+++|.+ .+|++.. .+.+.|+.
T Consensus 906 G~~~i~v~A~~~~~~D~v~~~L~V~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~-~vp~s~~~~~v~~~~~~~ 984 (1676)
T 3cu7_A 906 GLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSGVTLDPRGIYGTISRRKEFPYRIPLD-LVPKTEIKRILSVKGLLV 984 (1676)
T ss_dssp SCCCEEEEEEETTEEEEEEECCCEECSCEEEEEEEEEEEBTTCTTTSCBCCEEECCCCCTT-BCTTCCCEEEEEEESSTT
T ss_pred CcEEEEEEEEecCCCceEEEEEEEecCceEEEEEEEEEEecccccCcceeeEEEeccCccc-cCCCCceEEEEEEEcccc
Confidence 99999999999888999999999999999999999999999742 1122 4566777876 7888743 45667765
Q ss_pred ----C------Cccccccccch----------------------------------------------------------
Q psy742 158 ----I------NSSSISTLKML---------------------------------------------------------- 169 (713)
Q Consensus 158 ----~------~l~sLi~~P~g---------------------------------------------------------- 169 (713)
+ +|++|++||||
T Consensus 985 ~~~~~~~l~~~~L~~L~~~PyGC~EQ~~s~~~P~~~~~~yL~~~~qw~~l~~~~~~~~~~~~~~i~~g~~r~l~~q~~dG 1064 (1676)
T 3cu7_A 985 GEILSAVLSQEGINILTHLPKGSAEAELMSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNADY 1064 (1676)
T ss_dssp HHHHHHHHSSSSCCCSSSCCSCSSHHHHTTSHHHHHHHHHHHHTTCGGGCSSCHHHHHHHHHHHHHHHHHHGGGGBCTTS
T ss_pred hhhhhhccchhhhHHHhhCCCCcHHHHHHhhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 4 89999999997
Q ss_pred -----------hhhhhhHH---hhhhhcc-CCCHHHHHHHHHHHHh-ccCCCcceeeccccccccccccCCCCCCCcccC
Q psy742 170 -----------LWYSCLLC---LYIWETL-MLPLQVITQAVSWVLD-HQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFR 233 (713)
Q Consensus 170 -----------tWL~TAfV---F~qa~~~-~ID~~~I~~ai~WL~~-~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~ 233 (713)
+|| |||| |.+|+++ +||+++|+++++||.+ +|++||+|.+.++++|++|+|++.. .+...
T Consensus 1065 sfs~w~~~~~s~wL-TAyv~~~l~~A~~~~~v~~~~l~~a~~~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~---~~~~~ 1140 (1676)
T 3cu7_A 1065 SYSVWKGGSASTWL-TAFALRVLGQVNKYVEQNQNSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPV---EAREN 1140 (1676)
T ss_dssp CBCSSSSSCCCHHH-HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHSBCTTSCBCCCSSCCCCCCCSCHHH---HHHHH
T ss_pred CccccCCCCCcEEE-eHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhCCCCCcccCCccccchhhcCCccc---ccccC
Confidence 899 9999 9999999 9999999999999999 9999999999999999999754310 00123
Q ss_pred cceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHhcCCcc--HHHHHHHHHHh
Q psy742 234 NISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATI--AEAAFGILTQH 311 (713)
Q Consensus 234 ~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~~~~YtlAl~aYALaLa~~~~--~~~al~~L~~~ 311 (713)
++.+|||+++||+|+++.+ ++. ....++.+|++||++++..+. ++|++|++||||+++|+++ +..++++|++.
T Consensus 1141 ~~~ltAyvl~aL~~~~~~~-~~~-~~~~~i~~a~~yL~~~~~~~~---~~y~~A~lA~Al~l~g~~~~~a~~~l~~L~~~ 1215 (1676)
T 3cu7_A 1141 SLYLTAFTVIGIRKAFDIC-PLV-KIDTALIKADNFLLENTLPAQ---STFTLAISAYALSLGDKTHPQFRSIVSALKRE 1215 (1676)
T ss_dssp HHHHHHHHHHHHHHTGGGS-CCH-HHHHHHHHHHHHHHHHHSSCS---CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhccccc-CCc-ccHHHHHHHHHHHHHhhhccC---CHHHHHHHHHHHHhcCCchhhHHHHHHHHHhh
Confidence 6789999999999998653 221 234678999999999987766 9999999999999999987 67899999988
Q ss_pred hhccCCc---eeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-chhHHHHHHHhcccCCCC
Q psy742 312 ARSEGGL---TYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-LTDPIVKWLNSQRLTDGG 387 (713)
Q Consensus 312 a~~~~~~---~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-~a~~Iv~WL~~Qrn~~GG 387 (713)
+..+++. +||.....+ ..++.++ .+.+.+||+||||||+++..++. .+.++++||.+|||.+||
T Consensus 1216 a~~~~~~~~~~~w~~~~~~---------~~~~~~~---~~~~~~ve~tayaLlall~~~~~~~~~~iv~wL~~qr~~~Gg 1283 (1676)
T 3cu7_A 1216 ALVKGNPPIYRFWKDNLQH---------KDSSVPN---TGTARMVETTAYALLTSLNLKDINYVNPVIKWLSEEQRYGGG 1283 (1676)
T ss_dssp CEEETTTTSEEECCSCSSC---------CSSCCCS---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSSSC
T ss_pred hhhccCCccccCCCCCCCC---------ccccccC---CCccchHHHHHHHHHHHHhcCChhHHHHHHHHHHhccCCCCC
Confidence 8766554 499764311 0111111 12367999999999999999887 899999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHhcccCCcceeEEEEEEecCCCceeEEEEeccCcceeEeEEecCCCceEEE-EEEeeeEEEE
Q psy742 388 WASTQDTAMAMKALIEYTNRHRLRDVSYLTVSIEATALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKV-QASGAGYAIL 466 (713)
Q Consensus 388 F~STQDTvvALqALa~Ya~~~~~~~~~~l~v~V~~~~~~~~~~~~~I~~~N~~~~q~~~lp~~~g~v~v-~a~G~G~a~~ 466 (713)
|.|||||++||+||++|+.+... ...+++|+|...+. +....++|+.+| ++.|++++| .+++++| +++|+|++++
T Consensus 1284 ~~STQdT~~Al~AL~~y~~~~~~-~~~~~~v~v~~~~~-~~~~~~~v~~~n-~~~~~~~l~-~~~~~~v~~~~G~G~~~~ 1359 (1676)
T 3cu7_A 1284 FYSTQDTINAIEGLTEYSLLVKQ-LRLSMDIDVSYKHK-GALHNYKMTDKN-FLGRPVEVL-LNDDLIVSTGFGSGLATV 1359 (1676)
T ss_dssp CSTTTTHHHHHHHHHHHHHHSCC-CCCCCCCCEEESSS-CCCCCCCCCSSS-CSCCCEECC-SSSCEEECCCSCCSCEEE
T ss_pred ccccHHHHHHHHHHHHHHHHcCC-CCCcEEEEEEeCCC-CcceEEEECCCc-eEEEEEEec-CCCcEEEEEEeeeEEEEE
Confidence 99999999999999999988764 33567777776432 233578999999 888889998 5789999 9999999999
Q ss_pred EEEEEEeeccccccCCCCCCCeeEEEEeeccC-------CCCceeEEEEEEEeecc--CCCCccceEEEEEecCcceeec
Q psy742 467 QMSVDYNVDIAKFQTQPPVPAFALNTRANFHG-------RNQSHITYHSCQRWIYQ--NESARSGMAVLDVAIPTGYIIQ 537 (713)
Q Consensus 467 q~~~~Yn~~~~~~~~~~~~~~F~L~v~~~~~~-------~~~~~~~l~vC~~~~~~--~~~~~s~MaiveV~lpSGf~~~ 537 (713)
|+..+|+++.++ ...+.|+|++++.... ..+..+.+++|++|++. +....+||||+||+|||||+++
T Consensus 1360 ~v~~~Y~~~~~~----~~~~~f~l~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~maivdv~LpsGfe~~ 1435 (1676)
T 3cu7_A 1360 HVTTVVHKTSTS----EEVCSFYLKIDTQDIEASHYRGYGNSDYKRIVACASYKPSREESSSGSSHAVMDISLPTGISAN 1435 (1676)
T ss_dssp EEEEEEEBSCCS----SSCCSEEEEEEEECC------------CCEEEEEEEECCCTTCCSSCCCSEEEEEECCTTCEEC
T ss_pred EEEEEEeccCCC----cCCCcceEEEEecccccccccccCCCcEEEEEEEEEEcCccccccCCCCcEEEEEecCcCCccC
Confidence 999999998753 2335699999864321 35678999999999753 1135699999999999999999
Q ss_pred ccchHHHhccCCCCcceeEEEeCCEEEEEEecCCC-ceeEEEEEEEEEeeeeccccceeEEEEeccCCCceeEEEeecCc
Q psy742 538 QQKLDAYIRTRNVPNLQRARFQEQKVLFYFDYLDD-TETCINFTIERWFPVANMSRYLPIRVYDYYAPERFNETIFDALP 616 (713)
Q Consensus 538 ~~~L~~l~~~~~~~~i~~~E~~d~~V~lYfd~l~~-~~~cv~f~~~~~~~V~~~~~pa~v~VYDYY~P~~~~~~~y~~~~ 616 (713)
+++|+++... ....++|+|++|++|++|||++++ +..||.|.+++.++|+++ +||+|+|||||+|+++|+++|++..
T Consensus 1436 ~~~l~~l~~~-~~~~~~~~E~~~~~v~~Y~d~~~~~~~~~~~~~~~~~~~v~~~-~Pa~v~vydyY~p~~~~~~~Y~~~~ 1513 (1676)
T 3cu7_A 1436 EEDLKALVEG-VDQLFTDYQIKDGHVILQLNSIPSSDFLCVRFRIFELFEVGFL-SPATFTVYEYHRPDKQCTMFYSTSN 1513 (1676)
T ss_dssp HHHHHHHHSS-TTCSCSBCCEETTEEEEEESCCCSSSCEEEEEEEECSSCCSSC-CCEEEEEEETTEEEEEEEEEECSCC
T ss_pred HHHHHHHhhc-cccceEEEEecCCEEEEEecccCCCCCEEEEEEEEEEeEeccc-cceEEEEEeccCCcceEEEEEcCCc
Confidence 9999998652 235688999999999999999998 489999999999999998 6999999999999999999999876
Q ss_pred cccccccc----ccCCCCCCCCCC
Q psy742 617 TYLLNICE----VCGSSQCPYCPI 636 (713)
Q Consensus 617 ~~~~~~C~----~C~~~~C~~c~~ 636 (713)
..++++|+ .|++++|+.|..
T Consensus 1514 ~~l~~~C~~~~C~c~e~~c~~~~~ 1537 (1676)
T 3cu7_A 1514 IKIQKVCEGAACKCVEADCGQMQE 1537 (1676)
T ss_dssp CCCCCCCSTTCHHHHSCSCCCCCC
T ss_pred chhhhccCCCceeeccCCCchhhc
Confidence 67889996 468889999985
No 5
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=100.00 E-value=1.2e-79 Score=743.54 Aligned_cols=569 Identities=21% Similarity=0.331 Sum_probs=463.8
Q ss_pred eccceeEeeeeeEEE------EEEEEEEeeCCCEEEEeccCCCccceeeEEeeCCcccccccccEEEEEEEEecceeeEE
Q psy742 14 LAGQENMQSTIRSFA------VSLSAEMAPSATIVVYNVGRNGDVIADSLTFPVNGISRNNVNATVVFLPIVPVHLGDID 87 (713)
Q Consensus 14 l~~~~~~~~~~~~f~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~F~I~p~~lG~i~ 87 (713)
+.+||.+++++++|- ++|+|+|..++++|+.+.. +....|+++++.++ ++.|+|+|+|.++|.++
T Consensus 91 v~~GD~~~i~~~v~N~~~~~~~~v~v~l~~~~~~~~~~~~--~~~~~~~v~l~~~~-------~~~v~f~i~~~~~G~~~ 161 (915)
T 2hr0_B 91 VVRNEQVEIRAVLYNYRQNQELKVRVELLHNPAFCSLATT--KRRHQQTVTIPPKS-------SLSVPYVIVPLKTGLQE 161 (915)
T ss_dssp EETTCCEEEEEEEEECCSSCCEEEEEEECCCTTEECSCCS--SSCEEEEEEECTTE-------EEEEEEEEEECSCEEEE
T ss_pred EecCcEEEEEEEEEcCCCCeeEEEEEEEecCCceEeecCC--CCcceeEEEECCCC-------eEEEEEEEEECccceEE
Confidence 678999999999986 4899999999999987542 23367899999998 99999999999999999
Q ss_pred EEEEEEec--CCCceEEEEEEEecCCeE-EEEeEeeeeecccc---cceeeeeeeccCCCCccCCCCc--eEEEEecC--
Q psy742 88 VTVTASSL--IGRDTVTRKLHIIADGLP-QHRHQSILLDLSNR---AYVFQYLHVNVTETPIIPYDVD--RYYVYGSS-- 157 (713)
Q Consensus 88 I~V~A~s~--~~sD~V~~~L~V~peGv~-~~~~~s~~ld~~~~---~~~~~~~~~~~p~~~~ip~s~~--~~~v~Gs~-- 157 (713)
|+|+|.+. ..+|+++++|.|.|+|++ ++.+++.+|++++. ......+.+++|.. .+|++.. .+.+.|+.
T Consensus 162 i~v~a~~~~~~~~D~v~~~l~V~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~-~vp~s~~~~~vs~~~~~~~ 240 (915)
T 2hr0_B 162 VEVKAAVYHHFISDGVRKSLKVVPEGIRMNKTVAVRTLDPERLGREGVQKEDIPPADLSD-QVPDTESETRILLQGTPVA 240 (915)
T ss_dssp EEEEEEESSSCCEEEEEEEEEEECSCCC---CHHHHHHTTSCCSSCSSSSSSSCTTCCSS-CCSSCCCCCC-CCSSSSSS
T ss_pred EEEEEEecCCCCCceEEEEEEEccCCceeEEEEEEEEEeccccCCCcceeEEEeccCccc-cCCCCceeEEEEEEcccch
Confidence 99999984 479999999999999986 44788899998732 11233455667775 7888732 34555543
Q ss_pred ---------CCccccccccch-----------------------------------------------------------
Q psy742 158 ---------INSSSISTLKML----------------------------------------------------------- 169 (713)
Q Consensus 158 ---------~~l~sLi~~P~g----------------------------------------------------------- 169 (713)
.++++|++||||
T Consensus 241 ~~l~~~~~~~~l~~L~~yPyGC~EQ~~s~~~P~l~~~~yL~~~~q~~~~~~~~~~~a~~~i~~g~~rll~~Q~~DGsfs~ 320 (915)
T 2hr0_B 241 QMTEDAVDAERLKHLIVTPSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAA 320 (915)
T ss_dssp HHHHHHHSSSSGGGGCSSCCCSTTGGGGGTHHHHHHHHHHHHTTCHHHHCTHHHHHHHHHHHHHHHHHGGGCCTTTCCBS
T ss_pred hhhhcccchhhHHHHHhCCCCcHHHHHHhhhhHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHhhcCCCCccc
Confidence 248999999997
Q ss_pred -------hhhhhhHH---hhhhhcc-CCCHHHHHHHHHHHHh-ccCCCcceeeccccccccccccCCCCCCCcccCccee
Q psy742 170 -------LWYSCLLC---LYIWETL-MLPLQVITQAVSWVLD-HQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISL 237 (713)
Q Consensus 170 -------tWL~TAfV---F~qa~~~-~ID~~~I~~ai~WL~~-~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~L 237 (713)
+|| |||| |.+|+++ +||+++|+++++||.+ +|.+||+|.+.++++|++|+|++.|. ..+++.+
T Consensus 321 w~~~~~s~wl-TAyv~~~l~~a~~~~~v~~~~i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~----~~~~~~l 395 (915)
T 2hr0_B 321 FVKRAPSTWL-TAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNN----NEKDMAL 395 (915)
T ss_dssp SSSSCBCHHH-HHHHHHHHHTTTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCC----TTHHHHH
T ss_pred cCCCCCccee-hHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHhhccCCCccccCccccchhhcCCccCc----ccccccc
Confidence 899 9999 9999999 9999999999999995 99999999999999999998764321 1246889
Q ss_pred hHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHhcCCccHHHHHHHHHHhhhccCC
Q psy742 238 TAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGILTQHARSEGG 317 (713)
Q Consensus 238 TAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~~~~YtlAl~aYALaLa~~~~~~~al~~L~~~a~~~~~ 317 (713)
||||++||.++++.+.+-......++.+|++||+++...+. ++|++|++||||+++|++ ++.+++.|++.+. +
T Consensus 396 tAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~~~---~~y~~a~layAL~l~g~~-a~~~l~~L~~~~~---~ 468 (915)
T 2hr0_B 396 TAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQ---RSYTVAIAGYALAQMGRL-KGPLLNKFLTTAK---D 468 (915)
T ss_dssp HHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGGCC---SHHHHHHHHHHHHTTTCC-CHHHHHHHHHTSB---T
T ss_pred HHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhccC---CHHHHHHHHHHHHHcCCh-HHHHHHHHHhhcc---C
Confidence 99999999999865432122345688999999999987766 999999999999999998 7778888876543 3
Q ss_pred ceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-chhHHHHHHHhcccCCCCccchhhHHH
Q psy742 318 LTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-LTDPIVKWLNSQRLTDGGWASTQDTAM 396 (713)
Q Consensus 318 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-~a~~Iv~WL~~Qrn~~GGF~STQDTvv 396 (713)
..||.... +.+.+||+||||||+++..++. .+.++++||.+|||.+|||.|||||++
T Consensus 469 ~~~w~~~~----------------------~~~~~ve~TayaLlall~~~~~~~~~~~v~wL~~qq~~~Ggw~STQdT~~ 526 (915)
T 2hr0_B 469 KNRWEDPG----------------------KQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFM 526 (915)
T ss_dssp TTBCCCSS----------------------CHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHTCCCSSSSCCSHHHHHH
T ss_pred CCCCCCCC----------------------CCccchHHHHHHHHHHHhcCChhhHHHHHHHHHhcccCCCCccchhhHHH
Confidence 46785321 1356999999999999999888 899999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCcceeEEEEEEecCCCceeEEEEeccCcceeEeEEecCCCceEEEEEEeeeEEEEEEEEEEeecc
Q psy742 397 AMKALIEYTNRHRLRDVSYLTVSIEATALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDI 476 (713)
Q Consensus 397 ALqALa~Ya~~~~~~~~~~l~v~V~~~~~~~~~~~~~I~~~N~~~~q~~~lp~~~g~v~v~a~G~G~a~~q~~~~Yn~~~ 476 (713)
||+||++|+.+.......+++|+|...+. +....++|+.+|.++.|++++| .++.++|+++|+|++++|+..+||++.
T Consensus 527 Al~AL~~y~~~~~~~~~~~~~v~v~~~~~-~~~~~~~v~~~n~~~~~~~~l~-~~~~v~v~~~G~G~~~~~v~~~Y~~~~ 604 (915)
T 2hr0_B 527 VFQALAQYQKDAPDHQELNLDVSLQLPSR-SSKITHRIHWESASLLRSEETK-ENEGFTVTAEGKGQGTLSVVTMYHAKA 604 (915)
T ss_dssp HHHHHHHHHHHCCCCCSSCCCCCCCSSCS-SSCCCCCCCSSSSCCCCCCCCC-CSSCCCCCCCCSSSCCCCCCCSCCCCC
T ss_pred HHHHHHHHHHHcCcCCCCcEEEEEEeCCC-CcceEEEECCCCcceEEEEEEc-CCCeEEEEEEEEEEEEEEEEEEEeccC
Confidence 99999999987654222466676654321 1235688999998888888886 578999999999999999999999987
Q ss_pred ccccCCCCCCCeeEEEEeecc-------CCCCceeEEEEEEEeeccCCCCccceEEEEEecCcceeecccchHHHhccCC
Q psy742 477 AKFQTQPPVPAFALNTRANFH-------GRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTRN 549 (713)
Q Consensus 477 ~~~~~~~~~~~F~L~v~~~~~-------~~~~~~~~l~vC~~~~~~~~~~~s~MaiveV~lpSGf~~~~~~L~~l~~~~~ 549 (713)
++ ...+++|+|++++... ...+..+.++||++|++. ..++|+||||+|||||+|++++|.++... .
T Consensus 605 ~~---~~~~~~f~l~v~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~---~~~~maivdv~lpsGfe~~~~~l~~l~~~-~ 677 (915)
T 2hr0_B 605 KD---QLTCNKFDLKVTIKPAPETEKRPQDAKNTMILEICTRYRGD---QDATMSILDISMMTGFAPDTDDLKQLANG-V 677 (915)
T ss_dssp SS---CCSCSSEEEEEEEEECCTTSCCCSSCSEEEEEEEEEEECSS---SCBCSEEEEEECCSSEEECHHHHHHHHHS-S
T ss_pred CC---cCCCCceEEEEEEeccccccccCCCCCcEEEEEEEEEecCC---CCCCceEEEEecCCCCccCHhhHHHHhhc-c
Confidence 63 2356789999986432 145678999999999753 45899999999999999999999988652 2
Q ss_pred CCcceeEEE-----eCCEEEEEEecCCC-ceeEEEEEEEEEeeeeccccceeEEEEeccCCCceeEEEeecCc--ccccc
Q psy742 550 VPNLQRARF-----QEQKVLFYFDYLDD-TETCINFTIERWFPVANMSRYLPIRVYDYYAPERFNETIFDALP--TYLLN 621 (713)
Q Consensus 550 ~~~i~~~E~-----~d~~V~lYfd~l~~-~~~cv~f~~~~~~~V~~~~~pa~v~VYDYY~P~~~~~~~y~~~~--~~~~~ 621 (713)
...++|+|+ +|++|+||||++++ +..||.|++++.++|+++ +|++|+|||||+|+++|+++|+... ..+++
T Consensus 678 ~~~~~~~E~~~~~~~d~~v~~Y~d~l~~~~~~~~~~~~~~~~~v~~~-~Pa~v~vydyY~Pe~~~~~~Y~~~~~~~~l~~ 756 (915)
T 2hr0_B 678 DRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVELI-QPGAVKVYAYYNLEESCTRFYHPEKEDGKLNK 756 (915)
T ss_dssp SCSCSEECCCC----CCEEEEEESCBCSSSCCCEEEEEEESSCCSSC-CCEEEEEEETTEEEEEEEEEECBTTBSCCCCB
T ss_pred ccceEEEEeecccCCCCEEEEEeccCCCCCCEEEEEEEEEEEEeccc-cceEEEEEeccCCccceEEEEcCCccCchhhc
Confidence 356889998 99999999999997 489999999999999998 5999999999999999999998753 35788
Q ss_pred ccc----ccCCCCCCCCCC
Q psy742 622 ICE----VCGSSQCPYCPI 636 (713)
Q Consensus 622 ~C~----~C~~~~C~~c~~ 636 (713)
+|+ .|++++|+.|..
T Consensus 757 ~C~~~~C~c~e~~C~~~~~ 775 (915)
T 2hr0_B 757 LCRDELCRCAEENCFIQKS 775 (915)
T ss_dssp CCBTTBCCBCCSCSSSCCC
T ss_pred cCCCCceeecCCCCccccc
Confidence 895 368889999885
No 6
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.8e-75 Score=732.67 Aligned_cols=555 Identities=20% Similarity=0.373 Sum_probs=463.5
Q ss_pred eccceeEeeeeeEEEE-----EEEEEEeeCC-CEEEEeccCCCccceeeEEeeCCcccccccccEEEEEEEEecceeeEE
Q psy742 14 LAGQENMQSTIRSFAV-----SLSAEMAPSA-TIVVYNVGRNGDVIADSLTFPVNGISRNNVNATVVFLPIVPVHLGDID 87 (713)
Q Consensus 14 l~~~~~~~~~~~~f~~-----~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~F~I~p~~lG~i~ 87 (713)
+.+||.+++++++|-. +|+|+|..++ .+.+.+....+....|+++++.++ ++.|+|+|+|.++|.+.
T Consensus 676 v~~Gd~~~l~~~v~N~~~~~~~v~v~l~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-------~~~v~f~i~~~~~G~~~ 748 (1325)
T 2pn5_A 676 IKRGEAVVLQFTLFNNLGAEYIADVTLYNVANQTEFVGRPNTDLSYTKSVSVPPKV-------GVPISFLIKARKLGEMA 748 (1325)
T ss_dssp EETTCEEEEEEEEEECSSSCEEEEEEEECGGGCEEETTSCTTCCEEEEEEEECTTC-------CEEEEEEEEECSSEEEE
T ss_pred EEcCCEEEEEEEEEeCCCCcEEEEEEEeecCCceEEeccCCCCCcceEEEEECCCC-------eEEEEEEEEEcccceEE
Confidence 6789999999999986 8888987654 576665432223356889999998 99999999999999999
Q ss_pred EEEEEEecC--CCceEEEEEEEecCCeEEEEeEeeeeecccccceeeeeeeccCCCCccCCCCc-eEEEEecC-----CC
Q psy742 88 VTVTASSLI--GRDTVTRKLHIIADGLPQHRHQSILLDLSNRAYVFQYLHVNVTETPIIPYDVD-RYYVYGSS-----IN 159 (713)
Q Consensus 88 I~V~A~s~~--~sD~V~~~L~V~peGv~~~~~~s~~ld~~~~~~~~~~~~~~~p~~~~ip~s~~-~~~v~Gs~-----~~ 159 (713)
|+|+|.+.. .+|++++.|.|.|+|.+++.+++.+|++.+.......+.+++|.+ .+|++.. .+++.|+. ++
T Consensus 749 i~v~a~~~~~~~~D~v~~~l~V~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~-~~~~s~~~~vs~~~~~~~~~~~~ 827 (1325)
T 2pn5_A 749 VRVKASIMLGHETDALEKVIRVMPESLVQPRMDTRFFCFDDHKNQTFPINLDINKK-ADSGSTKIEFRLNPNLLTTVIKN 827 (1325)
T ss_dssp EEEEEESSTTSSEEEEEEEEEEECSSCCCCEEEEEEEEEEEEEEEEEEEECCCCCS-SCCSCCEEEEEEESSTTHHHHHT
T ss_pred EEEEEEecCCCCCcEEEEEEEEecCceEEEEEEEEEEeccCCCceEEEEeccCCCC-CCCCCeeEEEEEEechHHHHHHh
Confidence 999999775 689999999999999999999999999864222233466777776 5677643 56677766 78
Q ss_pred ccccccccch---------------------------------------------------------------hhhhhhH
Q psy742 160 SSSISTLKML---------------------------------------------------------------LWYSCLL 176 (713)
Q Consensus 160 l~sLi~~P~g---------------------------------------------------------------tWL~TAf 176 (713)
|++|++|||| +|| |||
T Consensus 828 L~~L~~~PyGC~EQ~~s~~~p~~~~~~yl~~~~~~~~~~~~~~~~~i~~g~~rll~~q~~dGgf~~f~~~~~s~~l-Ta~ 906 (1325)
T 2pn5_A 828 LDHLLGVPTGCGEQNMVKFVPNILVLDYLHAIGSKEQHLIDKATNLLRQGYQNQMRYRQTDGSFGLWETTNGSVFL-TAF 906 (1325)
T ss_dssp TTCCCSSCCCSTTGGGGGTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHGGGBCTTSCBCSSSSSCCCHHH-HHH
T ss_pred HHHHhcCCCCchhHHHHHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeeccCCCCCCeee-hHH
Confidence 9999999997 999 999
Q ss_pred H---hhhhhcc-C-CCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccc
Q psy742 177 C---LYIWETL-M-LPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDL 251 (713)
Q Consensus 177 V---F~qa~~~-~-ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l 251 (713)
| |.+|+++ + ||+++|+++++||.++|.+||+|.+.++++|++|+|++ ...+++||||++||+++++.
T Consensus 907 v~~~l~~a~~~~~~v~~~~l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~--------~~~~~~tayvl~aL~~~g~~ 978 (1325)
T 2pn5_A 907 VGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGL--------RNGVALTSYVLMALLENDIA 978 (1325)
T ss_dssp HHHHHHHHTTTCSCSCHHHHHHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCS--------STTHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhhEEcCCHHHHHHHHHHHHhhhccCCCccccccccChhhcCcc--------cCCccccHHHHHHHhhCccc
Confidence 9 8999998 6 99999999999999999999999999999999997643 23578999999999988753
Q ss_pred cCCCCCchhHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHhcCCccHHHHHHHHHHhhhccC--CceeecCCCCCCC
Q psy742 252 TGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGILTQHARSEG--GLTYWGKEPVPAP 329 (713)
Q Consensus 252 ~~g~~~~~~~~~~kA~~yLe~~~~~~~~~~~~YtlAl~aYALaLa~~~~~~~al~~L~~~a~~~~--~~~~W~~~~~~~~ 329 (713)
+. .....+++|++||+++.+... ++|++|+++|||++++++.+..+++.|++.+..++ +..||..
T Consensus 979 ~~----~~~~~i~~a~~~L~~~~~~~~---~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~~~~~~~~~~w~~------ 1045 (1325)
T 2pn5_A 979 KA----KHAEVIQKGMTYLSNQFGSIN---NAYDLSIATYAMMLNGHTMKEEALNKLIDMSFIDADKNERFWNT------ 1045 (1325)
T ss_dssp HH----HTHHHHHHHHHHHHHHGGGCC---CHHHHHHHHHHHHHHTCTTHHHHHHHHHHTCEEETTTTEEECCS------
T ss_pred cc----ccHHHHHHHHHHHHHhhcccC---CHHHHHHHHHHHHhcCCchHHHHHHHHHhhhhhccCCCcccCCC------
Confidence 21 123478999999999887655 99999999999999999888889999988765433 2566710
Q ss_pred CCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-chhHHHHHHHhcccCCCCccchhhHHHHHHHHHHHHHhc
Q psy742 330 PSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRH 408 (713)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-~a~~Iv~WL~~Qrn~~GGF~STQDTvvALqALa~Ya~~~ 408 (713)
+.++|+||||||+++..++. .+.++++||.+||+.+|||.|||||++||+||++|+...
T Consensus 1046 --------------------~s~ve~tA~aLlall~~~~~~~~~~~v~wL~~q~~~~g~w~sTq~T~~aL~AL~~y~~~~ 1105 (1325)
T 2pn5_A 1046 --------------------TNPIETTAYALLSFVMAEKYTDGIPVMNWLVNQRYVTGSFPSTQDTFVGLKALTKMAEKI 1105 (1325)
T ss_dssp --------------------SSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CCchHHHHHHHHHHhhhccchhhHHHHHHHHhccCCCCCccchHHHHHHHHHHHHHHHHc
Confidence 24899999999999999887 888999999999999999999999999999999999865
Q ss_pred ccCCcceeEEEEEEecCCCceeEEEEeccCcceeEeEEecCCCceEEEEEEeeeEEEEEEEEEEeeccccccCCCCCCCe
Q psy742 409 RLRDVSYLTVSIEATALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQPPVPAF 488 (713)
Q Consensus 409 ~~~~~~~l~v~V~~~~~~~~~~~~~I~~~N~~~~q~~~lp~~~g~v~v~a~G~G~a~~q~~~~Yn~~~~~~~~~~~~~~F 488 (713)
.... .+++++|.. ++....++++.+|.+..|++++|..++.++|+++|.|++++|+.++||++.++ ..++|
T Consensus 1106 ~~~~-~~~~v~v~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~G~~~~~~~~~y~~~~~~-----~~~~f 1176 (1325)
T 2pn5_A 1106 SPSR-NDYTVQLKY---KKSAKYFKINSEQIDVENFVDIPEDTKKLEINVGGIGFGLLEVVYQFNLNLVN-----FENRF 1176 (1325)
T ss_dssp SCSC-CEEEEEEEE---TTEEEEEEECCSSCCSCCCEECCCSCSEEEEEEEEEEEEEEEEEEECCCCCCC-----EEESE
T ss_pred CCCC-CcEEEEEEe---CCceEEEEEcccccceEEEEEcCCCCceEEEEEEEeEEEEEEEEEEEcccCCC-----CCCCc
Confidence 4323 567777765 34556799999998777778998888999999999999999999999987642 35789
Q ss_pred eEEEEeeccCCCCceeEEEEEEEeeccCCCCccceEEEEEecCcceeecccchHHHhccCCCCcceeEEEeC--CEEEEE
Q psy742 489 ALNTRANFHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTRNVPNLQRARFQE--QKVLFY 566 (713)
Q Consensus 489 ~L~v~~~~~~~~~~~~~l~vC~~~~~~~~~~~s~MaiveV~lpSGf~~~~~~L~~l~~~~~~~~i~~~E~~d--~~V~lY 566 (713)
.|+++.. .......+.++||++|+..+....++|+|+||+|||||++++++|.++.. ...++|+|++| ++|++|
T Consensus 1177 ~l~v~~~-~~~~~~~~~l~v~~~~~~~~~~~~s~m~ivdv~lpsG~e~~~~~L~~~~~---~~~i~~~E~r~~~~~v~~y 1252 (1325)
T 2pn5_A 1177 QLDLEKQ-NTGSDYELRLKVCASYIPQLTDRRSNMALIEVTLPSGYVVDRNPISEQTK---VNPIQKTEIRYGGTSVVLY 1252 (1325)
T ss_dssp EEEEEEE-CCSSTTEEEEEEEEEECCBTTBCSCSSEEEEEECCTTEEEEEEEEESCCS---SSCCCEEEEETTTTEEEEE
T ss_pred eEEEEEe-cCCCCceEEEEEEEEeccCCCCCCCceEEEEEecccCcccCHhHHHHhhc---cCccEEEEEECCCCEEEEE
Confidence 9999864 33456788999999997533345799999999999999999999987743 25689999987 699999
Q ss_pred EecCCCceeEEEEEEEEEeeeeccccceeEEEEeccCCCceeEEEeecCcccccccccccCCCCCC-CCC
Q psy742 567 FDYLDDTETCINFTIERWFPVANMSRYLPIRVYDYYAPERFNETIFDALPTYLLNICEVCGSSQCP-YCP 635 (713)
Q Consensus 567 fd~l~~~~~cv~f~~~~~~~V~~~~~pa~v~VYDYY~P~~~~~~~y~~~~~~~~~~C~~C~~~~C~-~c~ 635 (713)
||++++++.||.|.+.|.++|+++ +||+|+|||||+|+++|+++|+.. .+++|++|.+.+|. .|.
T Consensus 1253 ~d~~~~~~~~~~~~~~r~~~v~~~-~Pa~v~vydyY~p~~~~~~~Y~~~---~~~~c~~c~~~~~~~~~~ 1318 (1325)
T 2pn5_A 1253 YDNMGSERNCFTLTAYRRFKVALK-RPAYVVVYDYYNTNLNAIKVYEVD---KQNLCEICDEEDCPAECG 1318 (1325)
T ss_dssp ESCCCSSCEEEEEEEEECSCEESC-CCEEEEEEETTEEEEEEEEEECCC---CCCHHHHSCTTTCCSSCC
T ss_pred EecCCCCceEEEEEEEEEEEeccc-cceEEEEEeCCCCCceEEEEECcC---CccccccCCCcCcccccc
Confidence 999999999999999999999988 699999999999999999999853 56788888877885 453
No 7
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=100.00 E-value=4.7e-63 Score=589.53 Aligned_cols=457 Identities=23% Similarity=0.275 Sum_probs=361.1
Q ss_pred eccceeEeeeeeEEEE-----EEEEEEeeCCCEEEEeccCCCccceeeEEeeCCcccccccccEEEEEEEEecceeeEEE
Q psy742 14 LAGQENMQSTIRSFAV-----SLSAEMAPSATIVVYNVGRNGDVIADSLTFPVNGISRNNVNATVVFLPIVPVHLGDIDV 88 (713)
Q Consensus 14 l~~~~~~~~~~~~f~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~F~I~p~~lG~i~I 88 (713)
+..||.+++++++|-. +|+|+|..++++|+.+.+ ..+|+++++.++ ++.|+|+|+|+++|.++|
T Consensus 164 v~~GD~~~i~~~V~N~~~~~~~v~v~l~~~~~~~~~~~~----~~~~~~~v~a~~-------~~~v~f~i~~~~~G~~~i 232 (767)
T 4fxk_B 164 VRRFEQLELRPVLYNYLDKNLTVSVHVSPVEGLCLAGGG----GLAQQVLVPAGS-------ARPVAFSVVPTAAAAVSL 232 (767)
T ss_dssp EETTCEEEECCEEEECSSSCEEEEEEECCCTTEECSSSS----CCCEEEEECSSC-------EEECCEEEEECSCSEEEE
T ss_pred eccCCEEEEEEEEEECCCCCEEEEEEEEecCCeEEecCC----ceeEEEEEcCCC-------eEEEEEEEEECccCcEEE
Confidence 5689999999999965 999999999999987663 267899999998 999999999999999999
Q ss_pred EEEEEecC---CCceEEEEEEEecCCeEEEEeEeeeeecccccceeeeeeeccCCCCccCCCCce--EEEEecC------
Q psy742 89 TVTASSLI---GRDTVTRKLHIIADGLPQHRHQSILLDLSNRAYVFQYLHVNVTETPIIPYDVDR--YYVYGSS------ 157 (713)
Q Consensus 89 ~V~A~s~~---~sD~V~~~L~V~peGv~~~~~~s~~ld~~~~~~~~~~~~~~~p~~~~ip~s~~~--~~v~Gs~------ 157 (713)
+|+|.+.. .+|+|++.|+|+|||+.++.+.+..+++.+.......+..+.++. .+|.+..+ +.+.|+.
T Consensus 233 ~v~A~~~~~~~~~D~v~~~l~V~~~g~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~-~v~~~~~~~~v~~s~~~~~~~~~ 311 (767)
T 4fxk_B 233 KVVARGSFEFPVGDAVSKVLQIEKEGAIHREELVYELNPLDHRGRTLEIPGNSDPN-MIPDGDFNSYVRVTASDPLDTLG 311 (767)
T ss_dssp EEEEEECTTCCCEEEEEEEEEEECSSEEEEEEEEEECCSSSSSSSSSEEEEECCCC-CTTBCSSCCCEEEEEESCHHHHH
T ss_pred EEEEEecCCCCccceEEEEEeecCCCeeEEEEEEEEecccccCceEEEeecCCCcc-ccccccccceEEEeeEEEEEEec
Confidence 99998764 589999999999999999999999998865322111122222232 46655332 2222221
Q ss_pred -------CCccccccccch-------------------------------------------------------------
Q psy742 158 -------INSSSISTLKML------------------------------------------------------------- 169 (713)
Q Consensus 158 -------~~l~sLi~~P~g------------------------------------------------------------- 169 (713)
.++++|++||||
T Consensus 312 ~~~~~~~~~l~~Li~~P~GC~EQ~ms~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~DGsfs~w~ 391 (767)
T 4fxk_B 312 SEGALSPGGVASLLRLPRGCGEQTMIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKADGSYAAWL 391 (767)
T ss_dssp HHHTTSTTCGGGTSSCCCCSTTGGGGGTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTTSCBBSSS
T ss_pred chhhhhhhhHHHHHhccccchhhHHHhhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCCCCcccCC
Confidence 789999999997
Q ss_pred -----hhhhhhHH---hhhhhcc-CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHH
Q psy742 170 -----LWYSCLLC---LYIWETL-MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAH 240 (713)
Q Consensus 170 -----tWL~TAfV---F~qa~~~-~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAy 240 (713)
+|| |||| |.+|+++ +||+++|++++.||.++|++||+|.|.|+++|++|+|++.| ..++++||||
T Consensus 392 ~~~~s~wL-TAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~G~f~e~g~~~~~~~~gg~~~-----~~~~~~ltAy 465 (767)
T 4fxk_B 392 SRDSSTWL-TAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVG-----NDETVALTAF 465 (767)
T ss_dssp SSCBCHHH-HHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTTSCBCCSSCSCCCCCCSSTTT-----HHHHHHHHHH
T ss_pred CCCCCchh-HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhcccchhcchhcchhhcCCcCC-----CccchhHHHH
Confidence 999 9999 9999999 99999999999999999999999999999999999987654 3457899999
Q ss_pred HHHHHHhcccccCCCC-----CchhHHHHHHHHHHHHhhhh-ccCCCChHHHHHHHHHHHhcCCcc--HHHHHHHHHHhh
Q psy742 241 VLITLDTVKDLTGGLG-----ARVSLAQSKAIKWLERNLRL-LKDFGDPYEVAIVAYALRLSKATI--AEAAFGILTQHA 312 (713)
Q Consensus 241 VliaL~ea~~l~~g~~-----~~~~~~~~kA~~yLe~~~~~-~~~~~~~YtlAl~aYALaLa~~~~--~~~al~~L~~~a 312 (713)
|++||+|++....+.. ..+..+++||++||+++... +. ++|++|++||||++++++. +..++++|++.+
T Consensus 466 vliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~~~~---~~y~~Al~ayaL~l~~~~~~~~~~~~~~L~~~a 542 (767)
T 4fxk_B 466 VTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASAGLL---GAHAAAITAYALSLTKAPVDLLGVAHNNLMAMA 542 (767)
T ss_dssp HHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTSCCC---CHHHHHHHHHHHHHHTCTTHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhcccC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhc
Confidence 9999999875433221 12345789999999998753 45 9999999999999999875 457889999999
Q ss_pred hccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcC-Cc-chhHHHHHHHhcccCCCCccc
Q psy742 313 RSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ-EL-LTDPIVKWLNSQRLTDGGWAS 390 (713)
Q Consensus 313 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~-~~-~a~~Iv~WL~~Qrn~~GGF~S 390 (713)
..+++..||..............+.+....+..++..+.+|||||||||+++..+ +. .+.+|++||++|||++|||.|
T Consensus 543 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEttayaLla~l~~~~~~~~a~~iv~WL~~Qr~~~Ggf~S 622 (767)
T 4fxk_B 543 QETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEGKAEMADQASAWLTRQGSFQGGFRS 622 (767)
T ss_dssp CBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTCCTTSSCSS
T ss_pred EEcCCeeEEeccCCCcccccccccccccccccccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcCCCCCcC
Confidence 9988899997543211100000011100111112346889999999999999765 45 899999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcccCCcceeEEEEEEecCCC-ceeEEEEeccCcceeEeEEecCCCceEEEEEEeeeEEEEEEE
Q psy742 391 TQDTAMAMKALIEYTNRHRLRDVSYLTVSIEATALPG-QVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMS 469 (713)
Q Consensus 391 TQDTvvALqALa~Ya~~~~~~~~~~l~v~V~~~~~~~-~~~~~~I~~~N~~~~q~~~lp~~~g~v~v~a~G~G~a~~q~~ 469 (713)
||||++||+||++|+.+....+..+++|+|...+.++ ..+.|+++.+|.+.+|+..+|+.++.++|+++|+||+++|+.
T Consensus 623 TQdTv~AL~ALa~y~~~~~~~~~~~~~V~v~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~~~~~~~v~~~G~G~~~~qv~ 702 (767)
T 4fxk_B 623 TQDTVIALDALSAYWIASHTTEERGLNVTLSSTGRNGFKSHALQLNNRQIRGLEEELQFSLGSKINVKVGGNSKGTLKVL 702 (767)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCSCCCCEEEEEEEETTEEECCEEECSSCCCSSCCEEECSSSCEEEECCCSSCCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceEEEEEecCcCCcceeEEEecCcceeEEEEEeecCCCcEEEEEEEEEEEEEEEEE
Confidence 9999999999999998776444457888888765433 245799999999989999999999999999999999999999
Q ss_pred EEEeeccccccCCCCCCCeeEEEEe
Q psy742 470 VDYNVDIAKFQTQPPVPAFALNTRA 494 (713)
Q Consensus 470 ~~Yn~~~~~~~~~~~~~~F~L~v~~ 494 (713)
++||++.++ ...+..|+|+|.+
T Consensus 703 ~~Yn~~~~~---~~~~~~l~v~v~~ 724 (767)
T 4fxk_B 703 RTYNVLDMK---NTTCQDLQIEVTV 724 (767)
T ss_dssp EEEEESSCC---TTSCSSCEEEEEE
T ss_pred EEEeccCCC---CCCCcceEEEEEE
Confidence 999998753 2233456666554
No 8
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=100.00 E-value=2.2e-40 Score=362.00 Aligned_cols=227 Identities=30% Similarity=0.386 Sum_probs=178.0
Q ss_pred hhhhhhHH---hhhhhcc-CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHH
Q psy742 170 LWYSCLLC---LYIWETL-MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITL 245 (713)
Q Consensus 170 tWL~TAfV---F~qa~~~-~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL 245 (713)
+|| |||| |.+++++ .||+..|+++++||.++|++||+|.+.++++|++|+|++.+ ..+++.+||||++||
T Consensus 120 ~~l-Ta~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~~-----~~~~~~lTA~vl~aL 193 (367)
T 1hzf_A 120 TWL-TAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVG-----NDETVALTAFVTIAL 193 (367)
T ss_dssp HHH-HHHHHHHHHHHGGGTCCCHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGSS-----TTHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhhccCCCcccccccccccccCCCCC-----CcccccchHHHHHHH
Confidence 899 9999 8899998 99999999999999999999999999999999999887643 235689999999999
Q ss_pred HhcccccCCCC-----CchhHHHHHHHHHHHHhh-hhccCCCChHHHHHHHHHHHhcCCcc--HHHHHHHHHHhhhccCC
Q psy742 246 DTVKDLTGGLG-----ARVSLAQSKAIKWLERNL-RLLKDFGDPYEVAIVAYALRLSKATI--AEAAFGILTQHARSEGG 317 (713)
Q Consensus 246 ~ea~~l~~g~~-----~~~~~~~~kA~~yLe~~~-~~~~~~~~~YtlAl~aYALaLa~~~~--~~~al~~L~~~a~~~~~ 317 (713)
.+++..++... .+...+++||++||++++ .... ++|++|+++|||++++++. +..++++|++.+..+++
T Consensus 194 ~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~---~~y~~Al~ayAL~l~~~~~~~~~~~~~~L~~~a~~~~~ 270 (367)
T 1hzf_A 194 HHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLL---GAHAAAITAYALTLTKAPADLRGVAHNNLMAMAQETGD 270 (367)
T ss_dssp HHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCC---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCEECSS
T ss_pred HhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccC---CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhhhcCC
Confidence 98875332100 123457899999999985 4455 9999999999999999875 45788999999988888
Q ss_pred ceeecCCCCCCCCC----CccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhc-CCc-chhHHHHHHHhcccCCCCccch
Q psy742 318 LTYWGKEPVPAPPS----KIENQKPFLLPRLPYKYDAINIETTAYALLVYVSR-QEL-LTDPIVKWLNSQRLTDGGWAST 391 (713)
Q Consensus 318 ~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~-~~~-~a~~Iv~WL~~Qrn~~GGF~ST 391 (713)
.+||.....+.... .......++++ ++.+.+||+||||||+++.. ++. .+.+|++||.+|||.+|||.||
T Consensus 271 ~~~W~~~~~s~~~~~~~~~~~~~~~~~~~----~~~s~~vE~TAyaLLall~~~~~~~~~~~iv~WL~~qrn~~Ggw~sT 346 (367)
T 1hzf_A 271 NLYWGSVTGSQSNAVSPTPAPRNPSDPMP----QAPALWIETTAYALLHLLLHEGKAEMADQASAWLTRQGSFQGGFRST 346 (367)
T ss_dssp CEECC----------------------------CCCHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTSTTCSCSH
T ss_pred CCccCCCCCcccccccccccccccccccC----CCccchhHHHHHHHHHHHhccCchhhhHHHHHHHHhCcCCCCCcccH
Confidence 89997642100000 00000011222 13467999999999999976 556 8999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcc
Q psy742 392 QDTAMAMKALIEYTNRHR 409 (713)
Q Consensus 392 QDTvvALqALa~Ya~~~~ 409 (713)
|||++|||||++|+..++
T Consensus 347 qdTvvAL~AL~~y~~~~~ 364 (367)
T 1hzf_A 347 QDTVIALDALSAYWIASH 364 (367)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 999999999999998765
No 9
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=100.00 E-value=5e-39 Score=343.48 Aligned_cols=219 Identities=30% Similarity=0.451 Sum_probs=175.3
Q ss_pred hhhhhhHH---hhhhhcc-CCCHHHHHHHHHHHHh-ccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHH
Q psy742 170 LWYSCLLC---LYIWETL-MLPLQVITQAVSWVLD-HQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLIT 244 (713)
Q Consensus 170 tWL~TAfV---F~qa~~~-~ID~~~I~~ai~WL~~-~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVlia 244 (713)
+|| |||| |.+++++ +||+++|+++++||.+ +|++||||.+.++++|++|+|++.|. ...++.+||||+++
T Consensus 83 ~wl-Ta~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~----~~~~~~~ta~vl~a 157 (310)
T 2wy7_A 83 TWL-TAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNN----NEKDMALTAFVLIS 157 (310)
T ss_dssp HHH-HHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTC----SCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccc----cccccchHHHHHHH
Confidence 999 9999 9999999 9999999999999996 99999999999999999998765431 13468899999999
Q ss_pred HHhcccccCCCCCchhHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHhcCCccHHHHHHHHHHhhhccCCceeecCC
Q psy742 245 LDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGILTQHARSEGGLTYWGKE 324 (713)
Q Consensus 245 L~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~~~~YtlAl~aYALaLa~~~~~~~al~~L~~~a~~~~~~~~W~~~ 324 (713)
|.++++.+.+-......++++|++||+++.+... ++|++|+++|||+++|++ ++.++++|++.+. +..||...
T Consensus 158 L~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~---~~y~~a~~ayAL~l~g~~-~~~~l~~l~~~~~---~~~~w~~~ 230 (310)
T 2wy7_A 158 LQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQ---RSYTVAIAGYALAQMGRL-KGPLLNKFLTTAK---DKNRWEDP 230 (310)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCC---CHHHHHHHHHHHHHTTCC-CHHHHHHHHHHSB---TTTBCCCS
T ss_pred HHhcccccccCCcchHHHHHHHHHHHHHHhhccC---CHHHHHHHHHHHHhcCCc-HHHHHHHHHHhcc---CCCCCCCC
Confidence 9999764322112245689999999999887666 999999999999999998 6788888877543 33578542
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-chhHHHHHHHhcccCCCCccchhhHHHHHHHHHH
Q psy742 325 PVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIE 403 (713)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-~a~~Iv~WL~~Qrn~~GGF~STQDTvvALqALa~ 403 (713)
. +.+.+||+||||||+++..++. .+.++++||.+||+.+|||.|||||++||+||++
T Consensus 231 ~----------------------~~~~~ve~Ta~aLlal~~~~~~~~~~~~v~wL~~qq~~~Ggw~sTq~T~~aL~AL~~ 288 (310)
T 2wy7_A 231 G----------------------KQLYNVEATSYALLALLQLKDFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQ 288 (310)
T ss_dssp S----------------------CHHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHTTCCCCSTTCHHHHHHHHHHHHH
T ss_pred C----------------------CcccchHHHHHHHHHHHhcCChhhHHHHHHHHHHccCCCCCeeccHHHHHHHHHHHH
Confidence 1 1256999999999999999888 9999999999999999999999999999999999
Q ss_pred HHHhcccCCcceeEEEEEE
Q psy742 404 YTNRHRLRDVSYLTVSIEA 422 (713)
Q Consensus 404 Ya~~~~~~~~~~l~v~V~~ 422 (713)
|+.+.+..+..+++|+|..
T Consensus 289 y~~~~~~~~~~~~~v~v~~ 307 (310)
T 2wy7_A 289 YQKDAPDHQELNLDVSLQL 307 (310)
T ss_dssp HHHHCC-------------
T ss_pred HHHHcCCCCCCceEEEEec
Confidence 9998764223567777665
No 10
>3hrz_C Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_B* 3hs0_C*
Probab=100.00 E-value=3.8e-38 Score=343.29 Aligned_cols=214 Identities=19% Similarity=0.349 Sum_probs=176.0
Q ss_pred ceeEEEEEEecCCCceeEEEEeccCcceeEeEEecCCCceEEEEEEeeeEEEEEEEEEEeeccccccCCCCCCCeeEEEE
Q psy742 414 SYLTVSIEATALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQPPVPAFALNTR 493 (713)
Q Consensus 414 ~~l~v~V~~~~~~~~~~~~~I~~~N~~~~q~~~lp~~~g~v~v~a~G~G~a~~q~~~~Yn~~~~~~~~~~~~~~F~L~v~ 493 (713)
.+++|+|+..+. +..++|+||.+|++++|+.+| +.++.++|+++|+|||++|+.++||++.++ ...+++.|+|+|+
T Consensus 10 ~~l~V~v~~~~~-~~~~~f~v~~~N~lllQ~~~l-~~~~~~~V~a~G~G~a~lQv~~~Ynv~~~~--~~~~c~~F~L~V~ 85 (379)
T 3hrz_C 10 LNLDITIELPDR-EVPIRYRINYENALLARTVET-KLNQDITVTASGDGKATMTILTFYNAQLQE--KANVCNKFHLNVS 85 (379)
T ss_dssp CEEEEEEECTTC-SSCEEEEEEGGGTTBCEEEEE-SSCCCEEEEEEESCCEEEEEEEEEEECC-------CCCSEEEEEE
T ss_pred eeEEEEEEcCCC-CccEEEEECCCccceeeEEEe-cCCCeEEEEEEeeeEEEEEEEEEEcccCcc--ccccCCceEEEEE
Confidence 456666655322 345789999999999999999 579999999999999999999999997643 1234578999998
Q ss_pred eecc----CCCCceeEEEEEEEeeccCCCCccceEEEEEecCcceeecccchHHHhccCCCCcceeEEEe-----CCEEE
Q psy742 494 ANFH----GRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTRNVPNLQRARFQ-----EQKVL 564 (713)
Q Consensus 494 ~~~~----~~~~~~~~l~vC~~~~~~~~~~~s~MaiveV~lpSGf~~~~~~L~~l~~~~~~~~i~~~E~~-----d~~V~ 564 (713)
+... .....++.+.||++|++. ..||||||||+|||||+|+.++|++|.. .....|+|+|++ +++|+
T Consensus 86 ~~~~~~~~~~~~~~~~l~vc~~y~g~---~~SnMaIvdV~LlSGF~~~~~~L~~L~~-~~~~~I~r~E~~~~~s~~~~Vi 161 (379)
T 3hrz_C 86 VENIHLNAMGAKGALMLKICTRYLGE---VDSTMTIIDISMLTGFLPDAEDLTRLSK-GVDRYISRYEVDNNMAQKVAVI 161 (379)
T ss_dssp EEECCCC----CCCEEEEEEEEECSS---SCEEEEEEEEECCTTEEEBHHHHHHHHC-STTEEECCCCEETTEESCSEEE
T ss_pred eeccccCccccccEEEEEEEEEeCCC---CCCceEEEEEecCcceeechhhHHHHhh-ccccceeEEEEeccccCCCEEE
Confidence 7542 124567999999999863 4689999999999999999999999964 234568999997 89999
Q ss_pred EEEecCCCc-eeEEEEEEEEEeeeeccccceeEEEEeccCCCceeEEEeecCc--cccccccc----ccCCCCCCCCCC
Q psy742 565 FYFDYLDDT-ETCINFTIERWFPVANMSRYLPIRVYDYYAPERFNETIFDALP--TYLLNICE----VCGSSQCPYCPI 636 (713)
Q Consensus 565 lYfd~l~~~-~~cv~f~~~~~~~V~~~~~pa~v~VYDYY~P~~~~~~~y~~~~--~~~~~~C~----~C~~~~C~~c~~ 636 (713)
||||+++++ +.||+|+++|+|+|+++ |||+|+|||||+|+++|+++|++.. ..++++|+ .|+++.|+.+..
T Consensus 162 iYld~v~~~~~~c~~f~~~q~~~V~~l-qPA~V~VYDYYep~~~~~~fY~~~~~~~~l~~lC~~~~C~Cae~~C~~~~~ 239 (379)
T 3hrz_C 162 IYLNKVSHSEDECLHFKILKHFEVGFI-QPGSVKVYSYYNLDEKCTKFYHPDKGTGLLNKICIGNVCRCAGETCSSLNH 239 (379)
T ss_dssp EEEEEECSSSCEEEEEEEEECSCCSSC-CCEEEEEEETTBTTCCCEEEEBTTBTTCCCCEEEETTEEEECCSSCCCCBC
T ss_pred EEEccCCCCCcEEEEEEEEEEEEeccc-cceEEEEEeccCCCceEEEEEcCCcccchhhhhcCCCccEeecCCCCcccc
Confidence 999999985 79999999999999999 5999999999999999999998743 46788996 378889987654
No 11
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=100.00 E-value=5.1e-37 Score=322.76 Aligned_cols=207 Identities=31% Similarity=0.485 Sum_probs=175.0
Q ss_pred cchhhhhhhHH---hhhhhcc-CCCHHHHHHHHHHHHh-ccCCCcceeeccccccccccccCCCCCCCcccCcceehHHH
Q psy742 167 KMLLWYSCLLC---LYIWETL-MLPLQVITQAVSWVLD-HQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHV 241 (713)
Q Consensus 167 P~gtWL~TAfV---F~qa~~~-~ID~~~I~~ai~WL~~-~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyV 241 (713)
|.++|| |||| |.+++++ +||+++|+++++||.+ +|++||||.+.++++|++|+|++.|. ...++.+||||
T Consensus 64 ~~s~wl-Ta~v~~~l~~a~~~~~v~~~~i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~----~~~~~~lta~v 138 (277)
T 1qqf_A 64 PPSTWL-TAYVSRVFSLAANLIAIDSQVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNT----KEADVSLTAFV 138 (277)
T ss_dssp CCCHHH-HHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSC----TTHHHHHHHHH
T ss_pred CccHHH-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCC----ccCccchHHHH
Confidence 445999 9999 9999999 9999999999999995 99999999999999999998765321 13458899999
Q ss_pred HHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhhccCCCChHHHHHHHHHHHhcCCccHHHHHHHHHHhhhccCCceee
Q psy742 242 LITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGILTQHARSEGGLTYW 321 (713)
Q Consensus 242 liaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~~~~YtlAl~aYALaLa~~~~~~~al~~L~~~a~~~~~~~~W 321 (713)
+++|.++++.+.+-.......+++|++||+++.+... ++|++|+++|||+++|++ ++.++++|++.+. +..||
T Consensus 139 l~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~---~~y~~a~~ayAl~l~g~~-~~~~l~~l~~~~~---~~~~w 211 (277)
T 1qqf_A 139 LIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQ---RPYTVAIAGYALALMNKL-EEPYLTKFLNTAK---DRNRW 211 (277)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCC---CHHHHHHHHHHHHHTTCC-CTTHHHHHHHHSB---TTTBC
T ss_pred HHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHcCCh-HHHHHHHHHHhcc---CCCCC
Confidence 9999999764322122345789999999999987666 999999999999999998 6678888887653 34578
Q ss_pred cCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-chhHHHHHHHhcccCCCCccchhhHHHHHHH
Q psy742 322 GKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKA 400 (713)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-~a~~Iv~WL~~Qrn~~GGF~STQDTvvALqA 400 (713)
.... +.+.+||+||||||+++..++. .+.++++||.+|||.+|||.|||||++||+|
T Consensus 212 ~~~~----------------------~~~~~ve~Ta~aLlal~~~~~~~~~~~~v~wL~~qq~~~Ggw~sTq~T~~aL~A 269 (277)
T 1qqf_A 212 EEPG----------------------QQLYNVEATSYALLALLLLKDFDSVPPVVRWLNDERYYGGGYGSTQATFMVFQA 269 (277)
T ss_dssp CCTT----------------------CHHHHHHHHHHHHHHHHHTTCTTSHHHHHHHHHHCCCCTTSTTCHHHHHHHHHH
T ss_pred CCCC----------------------CccchhHHHHHHHHHHHhcCChhhHHHHHHHHHHccCCCCCeecchHHHHHHHH
Confidence 5421 1256999999999999999988 9999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy742 401 LIEYTNR 407 (713)
Q Consensus 401 La~Ya~~ 407 (713)
|++|+.+
T Consensus 270 L~~y~~~ 276 (277)
T 1qqf_A 270 LAQYRAD 276 (277)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999874
No 12
>1edy_A Alpha 1-macroglobulin; beta sandwich, pseudo-symmetric dimer, protein binding; 2.30A {Rattus norvegicus} SCOP: b.2.4.1
Probab=99.96 E-value=1.2e-28 Score=230.09 Aligned_cols=123 Identities=24% Similarity=0.473 Sum_probs=108.4
Q ss_pred CCeeEEEEeeccC----CCCceeEEEEEEEeeccCCCCccceEEEEEecCcceeecccchHHHhccCCCCcceeEEEeCC
Q psy742 486 PAFALNTRANFHG----RNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTRNVPNLQRARFQEQ 561 (713)
Q Consensus 486 ~~F~L~v~~~~~~----~~~~~~~l~vC~~~~~~~~~~~s~MaiveV~lpSGf~~~~~~L~~l~~~~~~~~i~~~E~~d~ 561 (713)
++|+|+|++.... ....++.+++|++|++. ...||||||||+|||||.++.++|++|.. .+.|+|+|++++
T Consensus 2 ~~F~L~V~~~~~~~~~~~~~~~~~l~vc~~y~g~--~~~SnMai~dV~l~SGf~~~~~~l~~L~~---~~~i~r~E~~~~ 76 (134)
T 1edy_A 2 APFTLKVNTLPLNFDKAEHHRKFQIHINVSYIGE--RPNSNMVIVDVKMVSGFIPVKPSVKKLQD---QSNIQRTEVNTN 76 (134)
T ss_dssp CSEEEEEEEEESSTTTCSSCCEEEEEEEEEECSS--SSSCSSEEEEEECCTTEEECHHHHHGGGG---STTEEEEEEETT
T ss_pred CccEEEEEEecccCCCcCcccEEEEEEEEEEcCC--CCCCCEEEEEEecccCceEcHHHHHHhhc---ccceEEEEecCC
Confidence 4799999864321 23467999999999753 46799999999999999999999999864 357999999999
Q ss_pred EEEEEEecCCCceeEEEEEEEEEeeeeccccceeEEEEeccCCCceeEEEeec
Q psy742 562 KVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIRVYDYYAPERFNETIFDA 614 (713)
Q Consensus 562 ~V~lYfd~l~~~~~cv~f~~~~~~~V~~~~~pa~v~VYDYY~P~~~~~~~y~~ 614 (713)
+|+||||++++++.||+|+++|+++|+++ |||+|+|||||+|+++|+++|+.
T Consensus 77 ~VilY~d~l~~~~~c~~f~~~q~~~V~~~-qPa~V~VYDYY~p~~~~~~~Y~~ 128 (134)
T 1edy_A 77 HVLIYIEKLTNQTMGFSFAVEQDIPVKNL-KPAPVKVYDYYETDEFAIEEYSA 128 (134)
T ss_dssp EEEEEESCCCSSCEEEEEEEEESSCCSCC-CCEEEEEEESSCTTSEEEEEECC
T ss_pred EEEEEEecCCCCcEEEEEEEEEEEEeccc-cceEEEEEecCCCCceeEEEECC
Confidence 99999999999999999999999999998 69999999999999999999974
No 13
>1ayo_A Alpha-2-macroglobulin; receptor binding domain; HET: NAG; 1.90A {Bos taurus} SCOP: b.2.4.1 PDB: 1bv8_A
Probab=99.96 E-value=1.4e-28 Score=228.28 Aligned_cols=122 Identities=24% Similarity=0.440 Sum_probs=107.1
Q ss_pred CCeeEEEEeeccC----CCCceeEEEEEEEeeccCCCCccceEEEEEecCcceeecccchHHHhccCCCCcceeEEEeCC
Q psy742 486 PAFALNTRANFHG----RNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTRNVPNLQRARFQEQ 561 (713)
Q Consensus 486 ~~F~L~v~~~~~~----~~~~~~~l~vC~~~~~~~~~~~s~MaiveV~lpSGf~~~~~~L~~l~~~~~~~~i~~~E~~d~ 561 (713)
++|+|+|++.... ....++.+++|++|++. ...||||||||+|||||.++.++|++|.. . .++|+|++++
T Consensus 2 ~~F~L~V~~~~~~~~~~~~~~~~~l~vc~~y~g~--~~~SnMai~dV~l~SGf~~~~~~l~~L~~---~-~i~r~E~~~~ 75 (130)
T 1ayo_A 2 FPFALEVQTLPQTCDGPKAHTSFQISLSVSYIGS--RPASNMAIVDVKMVSGFIPLKPTVKMLER---S-NVSRTEVSNN 75 (130)
T ss_dssp CSEEEEEEEESSSCCSGGGGTEEEEEEEEEECSS--SSSBSSEEEEEECCTTEEECHHHHHTTCS---S-SEEEEEEETT
T ss_pred CccEEEEEEecCcCCCcCcccEEEEEEEEEEcCC--CCCCCEEEEEEecccCceEcHHHHHHHhh---c-ceEEEEecCC
Confidence 4799999864322 13467999999999753 46799999999999999999999998843 2 6999999999
Q ss_pred EEEEEEecCCCceeEEEEEEEEEeeeeccccceeEEEEeccCCCceeEEEeec
Q psy742 562 KVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIRVYDYYAPERFNETIFDA 614 (713)
Q Consensus 562 ~V~lYfd~l~~~~~cv~f~~~~~~~V~~~~~pa~v~VYDYY~P~~~~~~~y~~ 614 (713)
+|+||||++++++.||+|+++|+++|+++ |||+|+|||||+|+++|+++|+.
T Consensus 76 ~VilY~d~l~~~~~c~~f~~~q~~~V~~~-qPa~V~VYDYY~p~~~~~~~Y~~ 127 (130)
T 1ayo_A 76 HVLIYLDKVTNETLTLTFTVLQDIPVRDL-KPAIVKVYDYYETDEFAVAEYSA 127 (130)
T ss_dssp EEEEEESCBCSSCEEEEEEEEESSCCSSC-CCEEEEEEESSCTTCEEEEEECC
T ss_pred EEEEEEecCCCCcEEEEEEEEEEEEeccc-cceEEEEEeCCCCCceeEEEECC
Confidence 99999999999999999999999999998 69999999999999999999974
No 14
>4fxk_C Complement C4 gamma chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_C*
Probab=99.95 E-value=1.4e-27 Score=249.74 Aligned_cols=134 Identities=25% Similarity=0.479 Sum_probs=115.5
Q ss_pred CCCceeEEEEEEEeeccCCCCccceEEEEEecCcceeecccchHHHhccCCCCcceeEEEeCCEEEEEEecCCCceeEEE
Q psy742 499 RNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTETCIN 578 (713)
Q Consensus 499 ~~~~~~~l~vC~~~~~~~~~~~s~MaiveV~lpSGf~~~~~~L~~l~~~~~~~~i~~~E~~d~~V~lYfd~l~~~~~cv~ 578 (713)
....++.++||++|++. ...||||||||+|||||+++.++|++|... ....++++|+++++|+||||+|++++.||+
T Consensus 8 ~~~~~~~l~vC~~y~g~--~~~SnMaI~eV~l~SGf~~~~~~L~~L~~~-~~~~i~~~E~~~~~VilYfd~i~~~~~Cv~ 84 (291)
T 4fxk_C 8 EQESRVHYTVCIWRNGK--VGLSGMAIADVTLLSGFHALRADLEKLTSL-SDRYVSHFETEGPHVLLYFDSVPTSRECVG 84 (291)
T ss_dssp CCCCEEEEEEEEECCSC--CSCCEEEEEEEECCTTEEECHHHHHHHHHS-SSCCCSEEECCTTEEEEEEEECCSSCEEEE
T ss_pred CccCEEEEEEEEEEcCC--CCCCceEEEEEcCCCceeEchhhHHHHhhc-ccceeEEEEecCCeEEEEEccCCCCeeEEE
Confidence 45678999999999754 457999999999999999999999999753 345789999999999999999999899999
Q ss_pred EEEEEEeeeeccccceeEEEEeccCCCceeEEEeecCc--cccccccc----ccCCCCCCCCCC
Q psy742 579 FTIERWFPVANMSRYLPIRVYDYYAPERFNETIFDALP--TYLLNICE----VCGSSQCPYCPI 636 (713)
Q Consensus 579 f~~~~~~~V~~~~~pa~v~VYDYY~P~~~~~~~y~~~~--~~~~~~C~----~C~~~~C~~c~~ 636 (713)
|+++|+++|+++ +||+|+|||||+|+++|+++|+... ..++++|+ .|+++.|+.|..
T Consensus 85 f~~~q~~~V~~~-qPa~V~VYDYY~p~~~~t~fY~~~~~s~~l~~lC~~d~C~cae~~C~~~k~ 147 (291)
T 4fxk_C 85 FEAVQEVPVGLV-QPASATLYDYYNPERRCSVFYGAPSKSRLLATLCSAEVCQCAEGKCPRQRR 147 (291)
T ss_dssp EEEEESSCEESC-CCEEEEEEESSSCSSCCEEEECCCTTSSSSSCCCCHHHHHHHSSSSCCCBC
T ss_pred EEEEEEEEeccc-cceEEEEEeCccCCceEEEEEcCCcCcchhhhhcCCcccchhccCCcchhc
Confidence 999999999998 6999999999999999998887533 23567774 356778988865
No 15
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=99.66 E-value=2.7e-16 Score=182.84 Aligned_cols=217 Identities=18% Similarity=0.252 Sum_probs=150.6
Q ss_pred hhhhhhHH---hhhhhcc--CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCC-C-CcccCcceehHHHH
Q psy742 170 LWYSCLLC---LYIWETL--MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPN-D-DVKFRNISLTAHVL 242 (713)
Q Consensus 170 tWL~TAfV---F~qa~~~--~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~-~-~~~~~~v~LTAyVl 242 (713)
+|. |||+ |.++... .++++.+.++++||+++|.+||+|.....--...+.+++.-++ + .....++.+||+|+
T Consensus 375 v~d-TA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl 453 (631)
T 2sqc_A 375 VCD-TAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVL 453 (631)
T ss_dssp HHH-HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHH
T ss_pred hHH-HHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHH
Confidence 899 9999 6666554 3567889999999999999999996532111111222221110 0 00124577999999
Q ss_pred HHHHhcccccCCCCCchhHHHHHHHHHHHHhhhhccC------CCChHHHHHHHHHHHhcCC----ccHHHHHHHHHHhh
Q psy742 243 ITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKD------FGDPYEVAIVAYALRLSKA----TIAEAAFGILTQHA 312 (713)
Q Consensus 243 iaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~------~~~~YtlAl~aYALaLa~~----~~~~~al~~L~~~a 312 (713)
.+|.+.+. + .....++||++||.+.-..-.. ....|..+.+++||+.++. +....+++.|.+.+
T Consensus 454 ~aL~~~g~--~----~~~~~i~rai~~L~~~Q~~DGsw~g~wg~~~~y~Ta~~l~aL~~~g~~~~~~~i~rav~~L~s~Q 527 (631)
T 2sqc_A 454 ECFGSFGY--D----DAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQ 527 (631)
T ss_dssp HHHHTTTC--C----TTSHHHHHHHHHHHHHCCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTC
T ss_pred HHHHhcCC--C----ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHhC
Confidence 99988653 1 1235789999999986531100 1146999999999999984 34568888888877
Q ss_pred hccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc---chhHHHHHHHhcccCCCCcc
Q psy742 313 RSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL---LTDPIVKWLNSQRLTDGGWA 389 (713)
Q Consensus 313 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~---~a~~Iv~WL~~Qrn~~GGF~ 389 (713)
..+|+ |..... .+.+ . .|. +....+++.|+|||++++..+.. ...++++||.++|+.+|||.
T Consensus 528 ~~DGg---Wg~~~~-----sy~~-~-~~~-----~~~~s~v~~Ta~ALlaL~~ag~~~~~~i~rav~wL~~~Q~~dGgw~ 592 (631)
T 2sqc_A 528 NPDGG---WGEDCR-----SYED-P-AYA-----GKGASTPSQTAWALMALIAGGRAESEAARRGVQYLVETQRPDGGWD 592 (631)
T ss_dssp CTTSC---CCCCGG-----GGTC-G-GGT-----TCSSCCHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHCCTTSCCC
T ss_pred cCCCC---cCCccc-----cccc-c-ccC-----CCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhccCCCCCcC
Confidence 66654 754210 0000 0 011 11346899999999999988764 56789999999999999999
Q ss_pred chhhH-----------------HHHHHHHHHHHHhc
Q psy742 390 STQDT-----------------AMAMKALIEYTNRH 408 (713)
Q Consensus 390 STQDT-----------------vvALqALa~Ya~~~ 408 (713)
++|+| +++|+||++|..+.
T Consensus 593 ~~~~tg~gf~~~~yl~y~~y~~~f~l~AL~~y~~~~ 628 (631)
T 2sqc_A 593 EPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQAI 628 (631)
T ss_dssp CCSCCEEEETTTEEEEETTHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccccccceeeccchhhHHHHHHHHHHHHHh
Confidence 99997 45999999998764
No 16
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=99.59 E-value=1.1e-14 Score=171.36 Aligned_cols=224 Identities=16% Similarity=0.200 Sum_probs=151.4
Q ss_pred hhhhhhhHH---hhhhhcc------CCCHHHHHHHHHHHHhccCCCcceeecccc----cccccc-ccCCCCCCCcccCc
Q psy742 169 LLWYSCLLC---LYIWETL------MLPLQVITQAVSWVLDHQTPDGSFYETTWL----VDRKVN-SSLNWPNDDVKFRN 234 (713)
Q Consensus 169 gtWL~TAfV---F~qa~~~------~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v----~h~~m~-g~~~Gg~~~~~~~~ 234 (713)
.+|. ||+| |.+++++ .++++.|.++++||++.|++||+|....+- +...++ +.+.|+. ......
T Consensus 453 d~d~-TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~-~~d~s~ 530 (732)
T 1w6k_A 453 VSDC-TAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDI-MIDYTY 530 (732)
T ss_dssp CHHH-HHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSC-SSCCCB
T ss_pred cccc-HHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhccccc-ccCCCc
Confidence 4899 9999 6666543 488899999999999999999999532111 000111 0001110 001234
Q ss_pred ceehHHHHHHHHhcccccCCCCC-chhHHHHHHHHHHHHhhhhccC------CCChHHHHHHHHHHHhcCCc--------
Q psy742 235 ISLTAHVLITLDTVKDLTGGLGA-RVSLAQSKAIKWLERNLRLLKD------FGDPYEVAIVAYALRLSKAT-------- 299 (713)
Q Consensus 235 v~LTAyVliaL~ea~~l~~g~~~-~~~~~~~kA~~yLe~~~~~~~~------~~~~YtlAl~aYALaLa~~~-------- 299 (713)
+.+||+|+.+|.+.+++.+++.. .....++||++||++.-..-.. ....|..+++.+||+++|..
T Consensus 531 v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~aG~~~~~~~~~~ 610 (732)
T 1w6k_A 531 VECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACA 610 (732)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCH
T ss_pred chHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCCCccchHHHHHHHHHHHhCCcccccchhH
Confidence 67999999999987753333321 1246799999999987532111 12579999999999999862
Q ss_pred cHHHHHHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc---chhHHHH
Q psy742 300 IAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL---LTDPIVK 376 (713)
Q Consensus 300 ~~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~---~a~~Iv~ 376 (713)
....+.+.|.+.+..+|+ |..... .+.+ + .|.+ +...+++.||||||+++..+.. ...++++
T Consensus 611 ~i~rav~~Lls~Q~~DGG---Wge~~~-----s~~~-~-~y~~-----~~~s~v~~TAwALlALl~ag~~~~~~i~r~v~ 675 (732)
T 1w6k_A 611 EVSRACDFLLSRQMADGG---WGEDFE-----SCEE-R-RYVQ-----SAQSQIHNTCWAMMGLMAVRHPDIEAQERGVR 675 (732)
T ss_dssp HHHHHHHHHHTTCCTTSC---CCBCTH-----HHHH-T-SCCB-----CSSCCHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCC---CCCCCc-----cccc-c-ccCC-----CCCCCHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 345788888887766654 754210 0000 0 1111 1245899999999999987764 4668899
Q ss_pred HHHhcccCCCCccchhh----------------HHHHHHHHHHHHHhcc
Q psy742 377 WLNSQRLTDGGWASTQD----------------TAMAMKALIEYTNRHR 409 (713)
Q Consensus 377 WL~~Qrn~~GGF~STQD----------------TvvALqALa~Ya~~~~ 409 (713)
||.++|+.+|||.+++. .+++|+||++|..+..
T Consensus 676 wL~~~Q~~~Ggf~~~~~~g~f~~~~~i~Y~~y~~~fpl~AL~~y~~~~~ 724 (732)
T 1w6k_A 676 CLLEKQLPNGDWPQENIAGVFNKSCAISYTSYRNIFPIWALGRFSQLYP 724 (732)
T ss_dssp HHHHHCCTTSCCCCCSCCEEETTTEEECCTTHHHHHHHHHHHHHHHHCT
T ss_pred HHHHhcCCCCCccCCcccccccchhhhcccchhHHHHHHHHHHHHHhcc
Confidence 99999999999997654 4679999999998653
No 17
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=99.52 E-value=1e-13 Score=143.20 Aligned_cols=133 Identities=15% Similarity=0.203 Sum_probs=111.3
Q ss_pred ccceeEeeeeeEEEE-----EEEEEEeeCCCEEEEeccCCCccceeeEEeeCCcccccccccEEEEEEEEecceeeEEEE
Q psy742 15 AGQENMQSTIRSFAV-----SLSAEMAPSATIVVYNVGRNGDVIADSLTFPVNGISRNNVNATVVFLPIVPVHLGDIDVT 89 (713)
Q Consensus 15 ~~~~~~~~~~~~f~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~F~I~p~~lG~i~I~ 89 (713)
..||.+.+++++|-. +|+|+|..++++|..+... ....|++++++++ ++.|+|+|+|+++|+++|+
T Consensus 93 ~rGE~~~l~~~V~Ny~~~~~~v~V~l~~~~~~~~~~~~~--~~~~~~v~v~a~~-------~~~v~f~i~p~~~G~~~i~ 163 (252)
T 3hrz_B 93 VKNEQVEIRAILHNYVNEDIYVRVELLYNPAFCSASTKG--QRYRQQFPIKALS-------SRAVPFVIVPLEQGLHDVE 163 (252)
T ss_dssp ETTCCEEEEEEEEECSSSCEEEEEEECCCTTEEESCCSS--CCEEEEEEECTTE-------EEEEEEEEEECSSEEEEEE
T ss_pred eeCCEEEEEEEEEcccCceEEEEEEEEcCCceEeecCCC--CceEEEEEECCCC-------eEEEEEEEEeccCCcEEEE
Confidence 468999999999976 8999999999999987532 2257889999998 9999999999999999999
Q ss_pred EEEE--ecCCCceEEEEEEEecCCeEEEEeEeeeeecccc---cceeeeeeeccCCCCccCCCCc--eEEEEecC
Q psy742 90 VTAS--SLIGRDTVTRKLHIIADGLPQHRHQSILLDLSNR---AYVFQYLHVNVTETPIIPYDVD--RYYVYGSS 157 (713)
Q Consensus 90 V~A~--s~~~sD~V~~~L~V~peGv~~~~~~s~~ld~~~~---~~~~~~~~~~~p~~~~ip~s~~--~~~v~Gs~ 157 (713)
|+|. +..++|+|+|+|+|+|||++++++++.+|||++. ......+.+++|.+ ++|++.. .++|.|+.
T Consensus 164 v~A~~~~~~~~D~v~k~L~V~peG~~~~~~~s~~l~~~~~~~~~~~~~~i~~~~P~~-~VpgS~~~~~vsv~Gd~ 237 (252)
T 3hrz_B 164 IKASVQEALWSDGVRKKLKVVPEGVQKSIVTIVKLDPRAKGVGGTQLEVIKARKLDD-RVPDTEIETKIIIQGDP 237 (252)
T ss_dssp EEEEETTSSCEEEEEEEEEEECSSEEEEEEEEEEECHHHHCSSSEEEEEECCCCCCS-BCTTCCEEEEEEEEECC
T ss_pred EEEEecCCCcCceEEEEEEECCCCeEeEEEEEEEEccccCCCCCcEEEEEeCCCccc-cCCCCCeeEEEEEEccc
Confidence 9996 4678999999999999999999999999999853 12234566777776 8999833 46788876
No 18
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=98.44 E-value=1.9e-06 Score=91.22 Aligned_cols=190 Identities=18% Similarity=0.202 Sum_probs=115.0
Q ss_pred CCccccccccch--hhh-----hhhHH---h---hhhhcc--CCCH---HHHHHHHHHHHhccCCCcceeeccccccccc
Q psy742 158 INSSSISTLKML--LWY-----SCLLC---L---YIWETL--MLPL---QVITQAVSWVLDHQTPDGSFYETTWLVDRKV 219 (713)
Q Consensus 158 ~~l~sLi~~P~g--tWL-----~TAfV---F---~qa~~~--~ID~---~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m 219 (713)
+++++|++|||| +.. |+-|+ + .|+.+. .+++ +.|++++.|+++.|++||+|...+
T Consensus 5 ~~l~~L~~~P~GC~EQ~~~~~~P~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~~dGgf~~f~------- 77 (310)
T 2wy7_A 5 ERLKHLIVTPSGAGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFV------- 77 (310)
T ss_dssp CTTGGGCCCCCSSTTHHHHHHHHHHHHHHHHHHHTCHHHHCTTHHHHHHHHHHHHHHHHHTTBCTTSCBCSST-------
T ss_pred HHHHHHHhCCCCcHHHHHHHHhHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHHHhcCCCCCcccCC-------
Confidence 579999999999 232 02222 1 122212 1111 568999999999999999997732
Q ss_pred cccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHH-hhhh---ccCCC--------------
Q psy742 220 NSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLER-NLRL---LKDFG-------------- 281 (713)
Q Consensus 220 ~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~-~~~~---~~~~~-------------- 281 (713)
+ ..++.|+||||+.+|.+++++. .. ...++++|++||.+ +... .....
T Consensus 78 ------~----~~~s~wlTa~v~~~l~~a~~~~---~v-~~~~i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~ 143 (310)
T 2wy7_A 78 ------K----RAPSTWLTAYVVKVFSLAVNLI---AI-DSQVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNN 143 (310)
T ss_dssp ------T----SCCCHHHHHHHHHHHHHHTTTS---CC-CHHHHHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTC
T ss_pred ------C----CCccHHHHHHHHHHHHHHHhcC---CC-CHHHHHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccc
Confidence 1 2346899999999999998532 12 23689999999995 4321 10000
Q ss_pred ---ChHHHHHHHHHHHhcCC------c----cHHHHHHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCC
Q psy742 282 ---DPYEVAIVAYALRLSKA------T----IAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKY 348 (713)
Q Consensus 282 ---~~YtlAl~aYALaLa~~------~----~~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (713)
+.+..|++.+||+.+++ + ....+++.|.+......
T Consensus 144 ~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~-------------------------------- 191 (310)
T 2wy7_A 144 NEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQ-------------------------------- 191 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHGGGCC--------------------------------
T ss_pred cccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHhhccC--------------------------------
Confidence 12345777778877732 2 23466777776432110
Q ss_pred CcchhhHHHHHHHHHhhcCCcchhHHHHHHHhcccCCCCccc-------hhhHHHHHHHHHHH
Q psy742 349 DAINIETTAYALLVYVSRQELLTDPIVKWLNSQRLTDGGWAS-------TQDTAMAMKALIEY 404 (713)
Q Consensus 349 ~s~~VEtTAYALLa~l~~~~~~a~~Iv~WL~~Qrn~~GGF~S-------TQDTvvALqALa~Y 404 (713)
.....=.+||||-. .++. +..++++|.++...++.|.. ...|++||.||.+-
T Consensus 192 ~~y~~a~~ayAL~l---~g~~-~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~ 250 (310)
T 2wy7_A 192 RSYTVAIAGYALAQ---MGRL-KGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQL 250 (310)
T ss_dssp CHHHHHHHHHHHHH---TTCC-CHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh---cCCc-HHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhc
Confidence 01233356677632 3443 77788888886432333432 23588999999763
No 19
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=98.38 E-value=3.7e-06 Score=87.52 Aligned_cols=158 Identities=20% Similarity=0.217 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHH
Q psy742 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIK 268 (713)
Q Consensus 189 ~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~ 268 (713)
+.|++++.|+++.|++||+|...+ + ..++.|+||||+.+|.+++++. .. ...++++|++
T Consensus 38 ~~i~~g~~~~l~~q~~dGgf~~f~-------------~----~~~s~wlTa~v~~~l~~a~~~~---~v-~~~~i~~a~~ 96 (277)
T 1qqf_A 38 ELIKKGYTQQLAFKQPISAYAAFN-------------N----RPPSTWLTAYVSRVFSLAANLI---AI-DSQVLCGAVK 96 (277)
T ss_dssp HHHHHHHHHHHTTBCTTSCBCSST-------------T----SCCCHHHHHHHHHHHHHHTTTS---CC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCccccC-------------C----CCccHHHHHHHHHHHHHHhhcC---CC-CHHHHHHHHH
Confidence 568999999999999999997732 1 2346899999999999988532 12 2368999999
Q ss_pred HHHH-hhhh---ccCCC-----------------ChHHHHHHHHHHHhcCC------c----cHHHHHHHHHHhhhccCC
Q psy742 269 WLER-NLRL---LKDFG-----------------DPYEVAIVAYALRLSKA------T----IAEAAFGILTQHARSEGG 317 (713)
Q Consensus 269 yLe~-~~~~---~~~~~-----------------~~YtlAl~aYALaLa~~------~----~~~~al~~L~~~a~~~~~ 317 (713)
||.+ +... ..... +.+..|++.+||..+++ + ....+++.|.+......
T Consensus 97 ~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~~~~~- 175 (277)
T 1qqf_A 97 WLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASYLNLQ- 175 (277)
T ss_dssp HHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHhccCC-
Confidence 9995 4321 00000 12345777778877732 2 23466777765432100
Q ss_pred ceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCcchhHHHHHHHhcccCCCCccc-------
Q psy742 318 LTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQELLTDPIVKWLNSQRLTDGGWAS------- 390 (713)
Q Consensus 318 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~~a~~Iv~WL~~Qrn~~GGF~S------- 390 (713)
.....=..||||- ..++. +..++++|.++...++.|..
T Consensus 176 -------------------------------~~y~~a~~ayAl~---l~g~~-~~~~l~~l~~~~~~~~~w~~~~~~~~~ 220 (277)
T 1qqf_A 176 -------------------------------RPYTVAIAGYALA---LMNKL-EEPYLTKFLNTAKDRNRWEEPGQQLYN 220 (277)
T ss_dssp -------------------------------CHHHHHHHHHHHH---HTTCC-CTTHHHHHHHHSBTTTBCCCTTCHHHH
T ss_pred -------------------------------CHHHHHHHHHHHH---HcCCh-HHHHHHHHHHhccCCCCCCCCCCccch
Confidence 0123334566653 22443 66788888886543333442
Q ss_pred hhhHHHHHHHHHH
Q psy742 391 TQDTAMAMKALIE 403 (713)
Q Consensus 391 TQDTvvALqALa~ 403 (713)
...|++||.||.+
T Consensus 221 ve~Ta~aLlal~~ 233 (277)
T 1qqf_A 221 VEATSYALLALLL 233 (277)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 1358899999875
No 20
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=98.30 E-value=7.3e-06 Score=96.58 Aligned_cols=192 Identities=18% Similarity=0.197 Sum_probs=116.9
Q ss_pred hhhhhhHH---hhhhhccC--CCHHHHHHHHHHHHhccCCC--------------cceeeccccccccccccCCCCCCCc
Q psy742 170 LWYSCLLC---LYIWETLM--LPLQVITQAVSWVLDHQTPD--------------GSFYETTWLVDRKVNSSLNWPNDDV 230 (713)
Q Consensus 170 tWL~TAfV---F~qa~~~~--ID~~~I~~ai~WL~~~Q~~d--------------G~F~e~g~v~h~~m~g~~~Gg~~~~ 230 (713)
+|= |||+ |.++..-. -....+.++++||.+.|..+ |+|..... ++
T Consensus 386 vwd-Talal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~-------------~~-- 449 (732)
T 1w6k_A 386 IWD-TAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTL-------------DC-- 449 (732)
T ss_dssp HHH-HHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCT-------------TT--
T ss_pred hHH-HHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhcccccCCcccccccCCCCCeecCCCC-------------CC--
Confidence 898 9999 55553222 12467999999999988655 44432110 00
Q ss_pred ccCcceehHHHHHHHHhcccccCCCC-CchhHHHHHHHHHHHHhhhhccCC---------------------C-------
Q psy742 231 KFRNISLTAHVLITLDTVKDLTGGLG-ARVSLAQSKAIKWLERNLRLLKDF---------------------G------- 281 (713)
Q Consensus 231 ~~~~v~LTAyVliaL~ea~~l~~g~~-~~~~~~~~kA~~yLe~~~~~~~~~---------------------~------- 281 (713)
...++..||+|+.||..+++..+.+. ......+.+|++||.+.-..-..+ +
T Consensus 450 ~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s 529 (732)
T 1w6k_A 450 GWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYT 529 (732)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCC
T ss_pred CCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCC
Confidence 12357799999999988765432111 112467899999998753210001 0
Q ss_pred ChHHHHHHHHHHHhcCC-----------ccHHHHHHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCc
Q psy742 282 DPYEVAIVAYALRLSKA-----------TIAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDA 350 (713)
Q Consensus 282 ~~YtlAl~aYALaLa~~-----------~~~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 350 (713)
.++.-|.+.-||+..+. +....+++-|.+....+|+ |... | ..
T Consensus 530 ~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGs---W~g~---------------w--------g~ 583 (732)
T 1w6k_A 530 YVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGS---WEGS---------------W--------GV 583 (732)
T ss_dssp BHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSC---CCCS---------------S--------BS
T ss_pred cchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHhhcCCCCC---ccCc---------------C--------CC
Confidence 12344445555554431 1234677777765543331 3210 0 02
Q ss_pred chhhHHHHHHHHHhhcCCc--------chhHHHHHHHhcccCCCCccch-----------------hhHHHHHHHHHH
Q psy742 351 INIETTAYALLVYVSRQEL--------LTDPIVKWLNSQRLTDGGWAST-----------------QDTAMAMKALIE 403 (713)
Q Consensus 351 ~~VEtTAYALLa~l~~~~~--------~a~~Iv~WL~~Qrn~~GGF~ST-----------------QDTvvALqALa~ 403 (713)
..+..|+++|.++...+.. ...+.++||.+.|+.+|||... -.|.+||.||..
T Consensus 584 ~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls~Q~~DGGWge~~~s~~~~~y~~~~~s~v~~TAwALlALl~ 661 (732)
T 1w6k_A 584 CFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHNTCWAMMGLMA 661 (732)
T ss_dssp SHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHTTCCTTSCCCBCTHHHHHTSCCBCSSCCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHHhcccCCCCCCCCccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 3455799999999887653 2457899999999999999842 138899999864
No 21
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=98.27 E-value=1.3e-05 Score=92.98 Aligned_cols=197 Identities=20% Similarity=0.219 Sum_probs=123.9
Q ss_pred hhhhhhHH---hhhhhccCCCHHHHHHHHHHHHhccCC-CcceeeccccccccccccCCCCCCC----cccCcceehHHH
Q psy742 170 LWYSCLLC---LYIWETLMLPLQVITQAVSWVLDHQTP-DGSFYETTWLVDRKVNSSLNWPNDD----VKFRNISLTAHV 241 (713)
Q Consensus 170 tWL~TAfV---F~qa~~~~ID~~~I~~ai~WL~~~Q~~-dG~F~e~g~v~h~~m~g~~~Gg~~~----~~~~~v~LTAyV 241 (713)
+|= |||+ +..+ .+..|...+.++++||.++|.. +|.|....+ |.. +||... ....+++.||++
T Consensus 311 vwd-ta~~l~AL~~~-G~~~~~~~~~ka~~~L~~~q~~~~g~~~~~~~--~~s-----~GgW~f~~~~~~~p~v~dTA~a 381 (631)
T 2sqc_A 311 VWD-TGLAVLALRAA-GLPADHDRLVKAGEWLLDRQITVPGDWAVKRP--NLK-----PGGFAFQFDNVYYPDVCDTAVV 381 (631)
T ss_dssp HHH-HHHHHHHHHHT-TCCTTCHHHHHHHHHHHHTCCCSCCGGGGTCT--TSC-----CCCBCSSSSCTTCCBHHHHHHH
T ss_pred HHH-HHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCCCCCChhhhcC--CCC-----CCCCccccCCCCCCchHHHHHH
Confidence 899 9999 3333 2333567899999999998864 476654221 111 122110 012568999999
Q ss_pred HHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhh---ccCC-----------------------CChHHHHHHHHHHHh
Q psy742 242 LITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRL---LKDF-----------------------GDPYEVAIVAYALRL 295 (713)
Q Consensus 242 liaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~---~~~~-----------------------~~~YtlAl~aYALaL 295 (713)
+.||.+++. .. .......+.+|++||.+.-.. ...+ .+...-|.+.-||..
T Consensus 382 l~AL~~~~~--~~-~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~ 458 (631)
T 2sqc_A 382 VWALNTLRL--PD-ERRRRDAMTKGFRWIVGMQSSNGGWGAYDVDNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGS 458 (631)
T ss_dssp HHHHTTCCC--SC-HHHHHHHHHHHHHHHHHTCCTTSCBCSSCSSCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHT
T ss_pred HHHHHHcCC--Cc-cchhHHHHHHHHHHHHhhcCCCCCCCccCCCCccccccccccccCCcccCCCCchHHHHHHHHHHh
Confidence 999998774 11 011235789999999875321 0000 122355666677777
Q ss_pred cCCcc----HHHHHHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCC---
Q psy742 296 SKATI----AEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQE--- 368 (713)
Q Consensus 296 a~~~~----~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~--- 368 (713)
.+.+. ...+++-|.+....+|+ |... | ....+..|+++|.++...+.
T Consensus 459 ~g~~~~~~~i~rai~~L~~~Q~~DGs---w~g~---------------w--------g~~~~y~Ta~~l~aL~~~g~~~~ 512 (631)
T 2sqc_A 459 FGYDDAWKVIRRAVEYLKREQKPDGS---WFGR---------------W--------GVNYLYGTGAVVSALKAVGIDTR 512 (631)
T ss_dssp TTCCTTSHHHHHHHHHHHHHCCTTSC---CCCS---------------S--------BSSHHHHHHHHHHHHHHTTCCTT
T ss_pred cCCCccHHHHHHHHHHHHHhcCCCCC---CCCC---------------C--------CCCchHHHHHHHHHHHHhCCccc
Confidence 76532 35677777766544442 3110 0 12346789999998887764
Q ss_pred c-chhHHHHHHHhcccCCCCccch-----------------hhHHHHHHHHHHH
Q psy742 369 L-LTDPIVKWLNSQRLTDGGWAST-----------------QDTAMAMKALIEY 404 (713)
Q Consensus 369 ~-~a~~Iv~WL~~Qrn~~GGF~ST-----------------QDTvvALqALa~Y 404 (713)
. ...+.++||.+.|+.+|||+.. -.|..||.||...
T Consensus 513 ~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~~~~~~~s~v~~Ta~ALlaL~~a 566 (631)
T 2sqc_A 513 EPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAG 566 (631)
T ss_dssp SHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcCCCCcCCccccccccccCCCCCCCHHHHHHHHHHHHHc
Confidence 2 6678999999999999999532 1388999999753
No 22
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=98.25 E-value=4.1e-06 Score=105.66 Aligned_cols=106 Identities=19% Similarity=0.125 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHH
Q psy742 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIK 268 (713)
Q Consensus 189 ~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~ 268 (713)
+.|++++.||+++|++||+|...+.- .|+ ..++.||||||+.+|.+|++. +.. ....+.+|++
T Consensus 983 ~~i~~g~~~ll~~q~~dGgf~~f~~~---------~~~----~~~s~wlTAyv~~~l~~a~~~---~~v-~~~~l~~a~~ 1045 (1451)
T 4acq_A 983 GYLNTGYQRQLNYKHYDGSYSTFGER---------YGR----NQGNTWLTAFVLKTFAQARAY---IFI-DEAHITQALI 1045 (1451)
T ss_dssp HHHHHHHHHHGGGBCTTSCBCSSTTG---------GGC----CCCCHHHHHHHHHHHHHHTTT---SCC-CTHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCeeeccCC---------CCC----CCCchhHHHHHHHHHHHhhhh---ccc-CHHHHHHHHH
Confidence 34789999999999999999883310 000 235789999999999999853 222 2468999999
Q ss_pred HHHHhhhh---ccCC-------------CChHHHHHHHHHHHhcCCcc----HHHHHHHHHHh
Q psy742 269 WLERNLRL---LKDF-------------GDPYEVAIVAYALRLSKATI----AEAAFGILTQH 311 (713)
Q Consensus 269 yLe~~~~~---~~~~-------------~~~YtlAl~aYALaLa~~~~----~~~al~~L~~~ 311 (713)
||.++-.. ..+. ++.|..|++.|||+.++.+. ...|++.|++.
T Consensus 1046 wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~~~~~~i~~A~~~L~~~ 1108 (1451)
T 4acq_A 1046 WLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLTVTHPVVRNALFCLESA 1108 (1451)
T ss_dssp HHHHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHH
T ss_pred HHHhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 99987532 1110 13567899999999998653 35788888755
No 23
>3es6_B Prolactin-inducible protein; major histocompatibility complex, protein-protein complex, P inducible protein, zinc 2-glycoprotein, ZAG-PIP complex; HET: NDG NAG BMA MAN P6G; 3.23A {Homo sapiens} SCOP: b.1.18.23
Probab=98.21 E-value=1.4e-06 Score=78.97 Aligned_cols=90 Identities=2% Similarity=-0.020 Sum_probs=76.6
Q ss_pred eccceeEeeeeeEE-----EEEEEEEEeeCCCEEEEeccCCCccceeeEEeeCCcccccccccEEEEEEEEecceeeEEE
Q psy742 14 LAGQENMQSTIRSF-----AVSLSAEMAPSATIVVYNVGRNGDVIADSLTFPVNGISRNNVNATVVFLPIVPVHLGDIDV 88 (713)
Q Consensus 14 l~~~~~~~~~~~~f-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~F~I~p~~lG~i~I 88 (713)
+.-||.++++++|| ||.|+|+|.+|+.+..... ..++.+.+.++ .++++|.|+| +|+++|
T Consensus 18 v~rgE~~~~~~~V~nyl~~~~~v~v~L~~s~~~~~~~~------~~~t~Clc~~~-------~~t~~W~i~~--lg~vni 82 (118)
T 3es6_B 18 VRPNDEVTAVLAVQTELKECMVVKTYLISSIPLQGAFN------YKYTACLCDDN-------PKTFYWDFYT--NRTVQI 82 (118)
T ss_dssp ECSSCCEEEEEEEEECCSSCEEEEEEEEESSCCCSGGG------CEEEEEECSSS-------CEEEEEEECC--SSCEEE
T ss_pred EecCCEEEEEEEEEecccceEEEEEEecCCcCEEccCC------CcccEEecCCC-------ceEEEEEEEe--CCeEEE
Confidence 45789999999999 5699999999999975433 67899999998 9999999987 699999
Q ss_pred EEEEEecCCCceEEEEEEEecCCeEEEEeE
Q psy742 89 TVTASSLIGRDTVTRKLHIIADGLPQHRHQ 118 (713)
Q Consensus 89 ~V~A~s~~~sD~V~~~L~V~peGv~~~~~~ 118 (713)
+|+|.+....|.....+.|.|+|..+....
T Consensus 83 TvsAea~~~~d~C~~e~~vvP~~~~~d~~i 112 (118)
T 3es6_B 83 AAVVDVIRELGICPDDAAVIPIKNNRFYTI 112 (118)
T ss_dssp EEEEEECCCSSSSGGGCCCCCSSCCEEEEE
T ss_pred EEEEEEecCcCccCCCceEcCCcCcEEEEE
Confidence 999998877888888888889888776543
No 24
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=98.21 E-value=1.5e-05 Score=85.28 Aligned_cols=184 Identities=14% Similarity=0.138 Sum_probs=115.9
Q ss_pred hhhhhhHH---hhhhhcc-CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHH
Q psy742 170 LWYSCLLC---LYIWETL-MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITL 245 (713)
Q Consensus 170 tWL~TAfV---F~qa~~~-~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL 245 (713)
.|+ +=|+ +...... .+| -+++++||.+.|++||+|.... | ...++..|.+++.+|
T Consensus 47 ~~~-~yw~l~~L~lLg~l~~~~---r~~~i~~l~s~Q~~dGGF~g~~------------g-----~~~~l~~Ty~Al~~L 105 (331)
T 3dss_B 47 MSG-VYWGLTVMDLMGQLHRMN---KEEILVFIKSCQHECGGVSASI------------G-----HDPHLLYTLSAVQIL 105 (331)
T ss_dssp HHH-HHHHHHHHHHTTCGGGSC---HHHHHHHHHHTBCTTSCBBSST------------T-----SCBCHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHhCCCchhh---HHHHHHHHhhhcCCCCCcCCCC------------C-----CCccHHHHHHHHHHH
Confidence 777 7666 4444444 444 5789999999999999997511 1 234677888888888
Q ss_pred HhcccccCCCCCchhHHHHHHHHHHHHhhhh---cc--CCC--ChHHHHHHHHHHHhcCCc---cHHHHHHHHHHhhhcc
Q psy742 246 DTVKDLTGGLGARVSLAQSKAIKWLERNLRL---LK--DFG--DPYEVAIVAYALRLSKAT---IAEAAFGILTQHARSE 315 (713)
Q Consensus 246 ~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~---~~--~~~--~~YtlAl~aYALaLa~~~---~~~~al~~L~~~a~~~ 315 (713)
.-.+++. ...++++++||++.-.. .. .++ +.+...-+.-+|++.+.. ..+.+.+-|.+....+
T Consensus 106 ~~l~~~~-------~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q~~d 178 (331)
T 3dss_B 106 TLYDSIH-------VINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFD 178 (331)
T ss_dssp HHTTCGG-------GSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTBCTT
T ss_pred HHcCCcc-------HHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCcCC
Confidence 6554321 12368999999996532 11 122 222222233345556643 3567888888766555
Q ss_pred CCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc---chhHHHHHHHhcccCCCCccch-
Q psy742 316 GGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL---LTDPIVKWLNSQRLTDGGWAST- 391 (713)
Q Consensus 316 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~---~a~~Iv~WL~~Qrn~~GGF~ST- 391 (713)
|| |...+ +....+-.|..|+.++...+.. ....+++||.+.|+..|||.--
T Consensus 179 GG---fg~~p----------------------g~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~ 233 (331)
T 3dss_B 179 GG---FGCRP----------------------GSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRP 233 (331)
T ss_dssp SC---BCSST----------------------TCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSST
T ss_pred CC---cCCCC----------------------CCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCC
Confidence 54 43211 1123566788899888887764 6789999999999999999753
Q ss_pred ---hhHHHHHHHHHHHHH
Q psy742 392 ---QDTAMAMKALIEYTN 406 (713)
Q Consensus 392 ---QDTvvALqALa~Ya~ 406 (713)
-|+...--|++..+.
T Consensus 234 ~k~~D~cys~w~l~~L~l 251 (331)
T 3dss_B 234 EKLPDVCYSWWVLASLKI 251 (331)
T ss_dssp TCCCCHHHHHHHHHHHHH
T ss_pred CCCCcchhHHHHHHHHHH
Confidence 356655444444433
No 25
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=98.20 E-value=2.1e-05 Score=95.18 Aligned_cols=158 Identities=20% Similarity=0.250 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHH
Q psy742 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIK 268 (713)
Q Consensus 189 ~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~ 268 (713)
+.|.+++.||++.|++||+|...+ + ..++.||||||+.+|.+++++. .. ...++++|++
T Consensus 299 ~~i~~g~~rll~~Q~~DGsfs~w~--------~---------~~~s~wlTAyv~~~l~~a~~~~---~v-~~~~i~~al~ 357 (915)
T 2hr0_B 299 ELIKKGYTQQLAFRQPSSAFAAFV--------K---------RAPSTWLTAYVVKVFSLAVNLI---AI-DSQVLCGAVK 357 (915)
T ss_dssp HHHHHHHHHHGGGCCTTTCCBSSS--------S---------SCBCHHHHHHHHHHHHTTTTTS---CC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCccccC--------C---------CCCcceehHHHHHHHHHhhhcC---CC-CHHHHHHHHH
Confidence 367889999999999999998732 1 2356899999999999998632 22 2478999999
Q ss_pred HHHH-hhh-h--ccCC-------------C----ChHHHHHHHHHHHhcCCc------c----HHHHHHHHHHhhhccCC
Q psy742 269 WLER-NLR-L--LKDF-------------G----DPYEVAIVAYALRLSKAT------I----AEAAFGILTQHARSEGG 317 (713)
Q Consensus 269 yLe~-~~~-~--~~~~-------------~----~~YtlAl~aYALaLa~~~------~----~~~al~~L~~~a~~~~~ 317 (713)
||.+ +.. . .... + +.+..|++.+||+.++.. . ...+++.|.+....
T Consensus 358 ~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~~~~--- 434 (915)
T 2hr0_B 358 WLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMN--- 434 (915)
T ss_dssp HHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHHGGG---
T ss_pred HHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHhhhc---
Confidence 9995 432 1 1000 0 122347777888888642 1 23566777654321
Q ss_pred ceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCcchhHHHHHHHhcccCCCCccc-------
Q psy742 318 LTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQELLTDPIVKWLNSQRLTDGGWAS------- 390 (713)
Q Consensus 318 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~~a~~Iv~WL~~Qrn~~GGF~S------- 390 (713)
|. .....=..|||| ...++. +..++++|.++...+..|..
T Consensus 435 ---~~--------------------------~~y~~a~layAL---~l~g~~-a~~~l~~L~~~~~~~~~w~~~~~~~~~ 481 (915)
T 2hr0_B 435 ---LQ--------------------------RSYTVAIAGYAL---AQMGRL-KGPLLNKFLTTAKDKNRWEDPGKQLYN 481 (915)
T ss_dssp ---CC--------------------------SHHHHHHHHHHH---HTTTCC-CHHHHHHHHHTSBTTTBCCCSSCHHHH
T ss_pred ---cC--------------------------CHHHHHHHHHHH---HHcCCh-HHHHHHHHHhhccCCCCCCCCCCCccc
Confidence 10 012222344543 233443 77888889887643333532
Q ss_pred hhhHHHHHHHHHH
Q psy742 391 TQDTAMAMKALIE 403 (713)
Q Consensus 391 TQDTvvALqALa~ 403 (713)
...|++||.||.+
T Consensus 482 ve~TayaLlall~ 494 (915)
T 2hr0_B 482 VEATSYALLALLQ 494 (915)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 2357899999865
No 26
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=98.19 E-value=1e-05 Score=89.56 Aligned_cols=174 Identities=19% Similarity=0.255 Sum_probs=110.9
Q ss_pred hhhhhhHHhhhhhcc--CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHh
Q psy742 170 LWYSCLLCLYIWETL--MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247 (713)
Q Consensus 170 tWL~TAfVF~qa~~~--~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~e 247 (713)
.|| +-|++.-..-+ .+|+..++++++||.+.|.+||+|.-.. + ....+..|.+++.+|.-
T Consensus 101 ~~l-~y~~l~aL~lLg~~~~~~~~~r~v~~l~s~Q~~dGGf~g~~------~-----------~~~~i~~T~~Al~aL~~ 162 (437)
T 2h6f_B 101 PWL-CYWILHSLELLDEPIPQIVATDVCQFLELCQSPEGGFGGGP------G-----------QYPHLAPTYAAVNALCI 162 (437)
T ss_dssp HHH-HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHBCTTSSBBSST------T-----------CCBCHHHHHHHHHHHHH
T ss_pred ccH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCcCCcc------C-----------CCcchhHHHHHHHHHHH
Confidence 577 65553223333 4788899999999999999999997622 1 12357789999999876
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhhhh---cc--CCC--ChHHHHHHHHHHHhcCC---ccHHHHHHHHHHhhhccCC
Q psy742 248 VKDLTGGLGARVSLAQSKAIKWLERNLRL---LK--DFG--DPYEVAIVAYALRLSKA---TIAEAAFGILTQHARSEGG 317 (713)
Q Consensus 248 a~~l~~g~~~~~~~~~~kA~~yLe~~~~~---~~--~~~--~~YtlAl~aYALaLa~~---~~~~~al~~L~~~a~~~~~ 317 (713)
.+... .+.. ..++||++||++.-.. .. .++ +.+..--+.-+|++.+. +..+.+.+-|.+....+||
T Consensus 163 lg~~~-~~~~---i~i~kav~~L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L~s~Q~~DGG 238 (437)
T 2h6f_B 163 IGTEE-AYDI---INREKLLQYLYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGG 238 (437)
T ss_dssp HCCHH-HHTT---SCHHHHHHHHHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSS
T ss_pred hCCcc-cccc---hHHHHHHHHHHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCCChHHHHHHHHHHHHccCCCCC
Confidence 55310 0010 2368999999986532 11 011 22222222223455553 3345678888877666664
Q ss_pred ceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc---chhHHHHHHHhccc-CCCCccc
Q psy742 318 LTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL---LTDPIVKWLNSQRL-TDGGWAS 390 (713)
Q Consensus 318 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~---~a~~Iv~WL~~Qrn-~~GGF~S 390 (713)
|+..+ +.....--|++||.+|...+.. .....++||.+.|. ..|||.-
T Consensus 239 ---wg~~p----------------------g~eSh~~~T~~Al~aL~~lg~~~~~~~~rl~~wL~~rQ~~~~GGf~g 290 (437)
T 2h6f_B 239 ---IGGVP----------------------GMEAHGGYTFCGLAALVILKRERSLNLKSLLQWVTSRQMRFEGGFQG 290 (437)
T ss_dssp ---BCSST----------------------TSCCCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHTBCTTTCSBBS
T ss_pred ---cCCCC----------------------CCCCCccHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCCCCCccC
Confidence 54321 1123566799999999988764 66789999999887 7899964
No 27
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=98.15 E-value=3.9e-05 Score=81.99 Aligned_cols=174 Identities=16% Similarity=0.214 Sum_probs=111.2
Q ss_pred hhhhhcc-CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCC
Q psy742 178 LYIWETL-MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLG 256 (713)
Q Consensus 178 F~qa~~~-~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~ 256 (713)
+.....+ .|| +.++++||.+.|++||+|.... + | +.++..|..++.+|.-.+.+.
T Consensus 105 L~~l~~~~~id---~~k~~~fL~~~Q~~DGsf~~~~------~-----g------e~d~~~ty~Al~~L~llg~~~---- 160 (331)
T 3dss_B 105 LTLYDSIHVIN---VDKVVAYVQSLQKEDGSFAGDI------W-----G------EIDTRFSFCAVATLALLGKLD---- 160 (331)
T ss_dssp HHHTTCGGGSC---HHHHHHHHHHTBCTTSCBBSST------T-----C------CBCHHHHHHHHHHHHHHTCGG----
T ss_pred HHHcCCccHHH---HHHHHHHHhccCCCCCCEeccc------C-----C------CCchHHHHHHHHHHHhcCCCC----
Confidence 4444556 666 8899999999999999997621 1 1 234555655666665444321
Q ss_pred CchhHHHHHHHHHHHHhhhhccCC-----C--ChHHHHHHHHHHHhcCCcc---HHHHHHHHHHhhhccCCceeecCCCC
Q psy742 257 ARVSLAQSKAIKWLERNLRLLKDF-----G--DPYEVAIVAYALRLSKATI---AEAAFGILTQHARSEGGLTYWGKEPV 326 (713)
Q Consensus 257 ~~~~~~~~kA~~yLe~~~~~~~~~-----~--~~YtlAl~aYALaLa~~~~---~~~al~~L~~~a~~~~~~~~W~~~~~ 326 (713)
...++++++||.+.-..-..+ . +...-+-+.-||++++..+ .+.+.+-|.+++..+||.. ..
T Consensus 161 ---~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~---gr-- 232 (331)
T 3dss_B 161 ---AINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLN---GR-- 232 (331)
T ss_dssp ---GSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBC---SS--
T ss_pred ---HHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcC---CC--
Confidence 135789999999854211000 0 1222222344677777653 4567777776655555422 11
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc---chhHHHHHHHhcccCC-CCccchh-------hHH
Q psy742 327 PAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL---LTDPIVKWLNSQRLTD-GGWASTQ-------DTA 395 (713)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~---~a~~Iv~WL~~Qrn~~-GGF~STQ-------DTv 395 (713)
| +.-.|+.-|-+++-++...+.. ...+.++||.+.||.. |||+... =|.
T Consensus 233 ------------------~--~k~~D~cys~w~l~~L~llg~~~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~ 292 (331)
T 3dss_B 233 ------------------P--EKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTL 292 (331)
T ss_dssp ------------------T--TCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHH
T ss_pred ------------------C--CCCCcchhHHHHHHHHHHcCCcchhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHH
Confidence 1 1235778888888888777753 7789999999999887 9997543 388
Q ss_pred HHHHHHHH
Q psy742 396 MAMKALIE 403 (713)
Q Consensus 396 vALqALa~ 403 (713)
+||-||+-
T Consensus 293 ~~l~~Ls~ 300 (331)
T 3dss_B 293 FGIAGLSL 300 (331)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 89888874
No 28
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.01 E-value=5.7e-05 Score=96.87 Aligned_cols=159 Identities=20% Similarity=0.230 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHH
Q psy742 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIK 268 (713)
Q Consensus 189 ~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~ 268 (713)
+.|+.++..|+++|++||+|.. |.+ ..++.||||||+.+|.+|+++. .. ...++++|++
T Consensus 1046 ~~i~~g~~r~l~~q~~dGsfs~--------w~~---------~~~s~wLTAyv~~~l~~A~~~~---~v-~~~~l~~a~~ 1104 (1661)
T 2b39_A 1046 ELIRKGYTQQLAFRQKSSAYAA--------FQY---------RPPSTWLTAYVVKVFALAANLI---AI-DSKDLCETVK 1104 (1661)
T ss_dssp HHHHHHHHHHHTTBCTTSCBCS--------STT---------SCCCHHHHHHHHHHHHHHTTTS---CC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCccc--------cCC---------CCCchhhhHHHHHHHHhhhhcc---cC-CHHHHHHHHH
Confidence 3577888999999999999987 421 2356999999999999998642 22 2478999999
Q ss_pred HHHH-hhh-h--ccC------------CC-----ChHHHHHHHHHHHhcCCc------c----HHHHHHHHHHhhhccCC
Q psy742 269 WLER-NLR-L--LKD------------FG-----DPYEVAIVAYALRLSKAT------I----AEAAFGILTQHARSEGG 317 (713)
Q Consensus 269 yLe~-~~~-~--~~~------------~~-----~~YtlAl~aYALaLa~~~------~----~~~al~~L~~~a~~~~~ 317 (713)
||.+ +.. . ..+ .. +....|+++|||+.+++. . ...+++.|.+....
T Consensus 1105 ~L~~~~q~~~g~f~~~~~~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~~~~~~~~~~i~~a~~yL~~~~~~--- 1181 (1661)
T 2b39_A 1105 WLILEKQKPDGIFQEDGPVIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRE--- 1181 (1661)
T ss_dssp HHHHHTBCTTSCBCCCSCCCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTTTTCSSHHHHHHHHHHHHHHHTTT---
T ss_pred HhhHhhCCCCCccccccceechhhcCCccccccCccccHHHHHHHHHhccccccccCcchhHHHHHHHHHHHHhhhc---
Confidence 9995 432 1 000 00 122347888888888642 2 23566666543210
Q ss_pred ceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCcchhHHHHHHHhcccCCCCccc-------
Q psy742 318 LTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQELLTDPIVKWLNSQRLTDGGWAS------- 390 (713)
Q Consensus 318 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~~a~~Iv~WL~~Qrn~~GGF~S------- 390 (713)
|. .....=..||||. ..++. +..++++|.++...+..|..
T Consensus 1182 ---~~--------------------------~~y~~A~layAL~---l~g~~-a~~~l~~L~~~~~~~~~W~~~~~~~~~ 1228 (1661)
T 2b39_A 1182 ---LR--------------------------RPYTVAIAAYALA---LLGKL-EGDRLTKFLNTAKEKNRWEEPNQKLYN 1228 (1661)
T ss_dssp ---CC--------------------------SHHHHHHHHHHHH---HTTCC-CHHHHHHHHHHSBTTTBCCCSSCHHHH
T ss_pred ---cC--------------------------CHHHHHHHHHHHH---HcCCc-HHHHHHHHHhhccCCCCCCCCCCCcch
Confidence 10 0122333445543 34443 77788888876654444643
Q ss_pred hhhHHHHHHHHHHH
Q psy742 391 TQDTAMAMKALIEY 404 (713)
Q Consensus 391 TQDTvvALqALa~Y 404 (713)
...|++||.||.+-
T Consensus 1229 vE~tayaLlall~~ 1242 (1661)
T 2b39_A 1229 VEATSYALLALLAR 1242 (1661)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 24678999998753
No 29
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=97.99 E-value=5.4e-05 Score=82.05 Aligned_cols=117 Identities=22% Similarity=0.166 Sum_probs=65.9
Q ss_pred eeccCCCCccCCCCc--eEEEEe--------c-----CCCccccccccch---hhhhhhHH--------hhhhhcc-CCC
Q psy742 135 HVNVTETPIIPYDVD--RYYVYG--------S-----SINSSSISTLKML---LWYSCLLC--------LYIWETL-MLP 187 (713)
Q Consensus 135 ~~~~p~~~~ip~s~~--~~~v~G--------s-----~~~l~sLi~~P~g---tWL~TAfV--------F~qa~~~-~ID 187 (713)
..++|.+ +||++.. .++|.| + .+++++|++|||| -++ ..|. +...+.. ..+
T Consensus 5 ~~~~p~~-~vp~s~~~~~v~v~~~~~~d~~g~~~~~~~~~l~~L~~~P~Gc~EQ~~-s~~~P~~~v~~~l~~~~~w~~~~ 82 (367)
T 1hzf_A 5 PGNSDPN-MIPDGDFNSYVRVTASDPLDTLGSEGALSPGGVASLLRLPRGCGEQTM-IYLAPTLAASRYLDKTEQWSTLP 82 (367)
T ss_dssp ------------------------------------CHHHHHTTCCCCCSSHHHHH-HHHHHHHHHHHHHHHTTCSTTSC
T ss_pred CCCCccc-cCCCCCceEEEEEecCCchhhhhhhhccCHHHHHHHHhCCCCCHHHHH-HHHHHHHHHHHHHHHhhhcccCC
Confidence 3455665 7888742 234433 2 1467899999999 222 2332 1111111 122
Q ss_pred ----H---HHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchh
Q psy742 188 ----L---QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVS 260 (713)
Q Consensus 188 ----~---~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~ 260 (713)
+ +.|+++++||++.|++||+|.. |.+ ..++.|+||||+.+|.++++. +.. ..
T Consensus 83 ~~~~~~~~~~i~~g~~~ll~~Q~~dGgf~~--------~~~---------~~~~~~lTa~v~~~l~~a~~~---~~v-~~ 141 (367)
T 1hzf_A 83 PETKDHAVDLIQKGYMRIQQFRKADGSYAA--------WLS---------RDSSTWLTAFVLKVLSLAQEQ---VGG-SP 141 (367)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTBCTTSCBCS--------STT---------SCCCHHHHHHHHHHHHHHGGG---TCC-CH
T ss_pred hhHHHHHHHHHHHHHHHHHhccCCCCCeec--------cCC---------CCCcHHHHHHHHHHHHHHHHH---hCC-CH
Confidence 1 4699999999999999999966 311 124689999999999999863 222 14
Q ss_pred HHHHHHHHHHHHhh
Q psy742 261 LAQSKAIKWLERNL 274 (713)
Q Consensus 261 ~~~~kA~~yLe~~~ 274 (713)
.++++|++||.++.
T Consensus 142 ~~i~~a~~~L~~~Q 155 (367)
T 1hzf_A 142 EKLQETSNWLLSQQ 155 (367)
T ss_dssp HHHHHHHHHHGGGB
T ss_pred HHHHHHHHHHHHhh
Confidence 68999999998864
No 30
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=97.95 E-value=5.7e-05 Score=94.93 Aligned_cols=160 Identities=20% Similarity=0.283 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHH
Q psy742 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIK 268 (713)
Q Consensus 189 ~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~ 268 (713)
+.|+++++||++.|++||+|.. |.+ ..++.|+||||+.+|.+++++ ++..+ ..++++|++
T Consensus 872 ~~i~~g~~rll~~q~~dGgf~~--------f~~---------~~~s~~lTa~v~~~l~~a~~~--~~~v~-~~~l~~a~~ 931 (1325)
T 2pn5_A 872 NLLRQGYQNQMRYRQTDGSFGL--------WET---------TNGSVFLTAFVGTSMQTAVKY--ISDID-AAMVEKALD 931 (1325)
T ss_dssp HHHHHHHHHHGGGBCTTSCBCS--------SSS---------SCCCHHHHHHHHHHHHHHTTT--CSCSC-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCeec--------cCC---------CCCCeeehHHHHHHHHHHHhh--EEcCC-HHHHHHHHH
Confidence 3588899999999999999988 321 235689999999999999863 33222 368899999
Q ss_pred HHHHhhhhccCCCC------h-------HHHHHHHHHH-HhcCCcc--------HHHHHHHHHHhhhccCCceeecCCCC
Q psy742 269 WLERNLRLLKDFGD------P-------YEVAIVAYAL-RLSKATI--------AEAAFGILTQHARSEGGLTYWGKEPV 326 (713)
Q Consensus 269 yLe~~~~~~~~~~~------~-------YtlAl~aYAL-aLa~~~~--------~~~al~~L~~~a~~~~~~~~W~~~~~ 326 (713)
||.+....-..+.. . ...++.+|+| +|++..+ ...+++.|.+...... .
T Consensus 932 ~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~--~------- 1002 (1325)
T 2pn5_A 932 WLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSIN--N------- 1002 (1325)
T ss_dssp HHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCC--C-------
T ss_pred HHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccC--C-------
Confidence 99876532100100 0 1356778886 4654422 2346667765432100 0
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCcchhHHHHHHHhccc--CC--C-Cc--cc-hhhHHHHH
Q psy742 327 PAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQELLTDPIVKWLNSQRL--TD--G-GW--AS-TQDTAMAM 398 (713)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~~a~~Iv~WL~~Qrn--~~--G-GF--~S-TQDTvvAL 398 (713)
....-..||||. +. ++..+..++++|.+.-. .. + .| .| ..+|++||
T Consensus 1003 -----------------------~~~~a~~ayaL~-l~--g~~~~~~~l~~L~~~~~~~~~~~~~~w~~~s~ve~tA~aL 1056 (1325)
T 2pn5_A 1003 -----------------------AYDLSIATYAMM-LN--GHTMKEEALNKLIDMSFIDADKNERFWNTTNPIETTAYAL 1056 (1325)
T ss_dssp -----------------------HHHHHHHHHHHH-HH--TCTTHHHHHHHHHHTCEEETTTTEEECCSSSHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHH-hc--CCchHHHHHHHHHhhhhhccCCCcccCCCCCchHHHHHHH
Confidence 112223567653 22 22246778888876311 11 1 12 33 35889999
Q ss_pred HHHHH
Q psy742 399 KALIE 403 (713)
Q Consensus 399 qALa~ 403 (713)
.||.+
T Consensus 1057 lall~ 1061 (1325)
T 2pn5_A 1057 LSFVM 1061 (1325)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99864
No 31
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=97.76 E-value=0.00013 Score=93.64 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHH
Q psy742 190 VITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKW 269 (713)
Q Consensus 190 ~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~y 269 (713)
.|+.++..+++.|++||+|.. |. + ..++.||||||+.+|.+|+++. .. ...++++|++|
T Consensus 1048 ~i~~g~~r~l~~q~~dGsfs~--------w~----~-----~~~s~wLTAyv~~~l~~A~~~~---~v-~~~~l~~a~~~ 1106 (1676)
T 3cu7_A 1048 KLKEGMLSIMSYRNADYSYSV--------WK----G-----GSASTWLTAFALRVLGQVNKYV---EQ-NQNSICNSLLW 1106 (1676)
T ss_dssp HHHHHHHHGGGGBCTTSCBCS--------SS----S-----SCCCHHHHHHHHHHHHHHHTTS---CC-CHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCCccc--------cC----C-----CCCcEEEeHHHHHHHHHHHhcc---cC-CHHHHHHHHHH
Confidence 467778888999999999988 41 1 2357999999999999998642 22 24789999999
Q ss_pred HHH
Q psy742 270 LER 272 (713)
Q Consensus 270 Le~ 272 (713)
|.+
T Consensus 1107 L~~ 1109 (1676)
T 3cu7_A 1107 LVE 1109 (1676)
T ss_dssp HHH
T ss_pred HHH
Confidence 998
No 32
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=97.48 E-value=0.0004 Score=82.37 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHH
Q psy742 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIK 268 (713)
Q Consensus 189 ~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~ 268 (713)
+.|..++..|++.|++||+|.. |. + ..++.||||||+.+|.+|+++ ++. .+..+.+++.
T Consensus 368 ~~l~~gyqrll~~q~~DGsfs~--------w~-----~----~~~s~wLTAyV~~~l~~A~~~--i~i--d~~~i~~a~~ 426 (767)
T 4fxk_B 368 DLIQKGYMRIQQFRKADGSYAA--------WL-----S----RDSSTWLTAFVLKVLSLAQEQ--VGG--SPEKLQETSN 426 (767)
T ss_dssp HHHHHHHHHHTTTBCTTSCBBS--------SS-----S----SCBCHHHHHHHHHHHHHTCSS--SSC--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCccc--------CC-----C----CCCCchhHHHHHHHHHHHHhh--cCc--chHHHHHHHH
Confidence 3488899999999999999977 31 1 235689999999999999863 222 2467899999
Q ss_pred HHHHhh
Q psy742 269 WLERNL 274 (713)
Q Consensus 269 yLe~~~ 274 (713)
||.++.
T Consensus 427 wL~~~Q 432 (767)
T 4fxk_B 427 WLLSQQ 432 (767)
T ss_dssp HHHHTB
T ss_pred HHHHhh
Confidence 998764
No 33
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=97.43 E-value=0.001 Score=73.48 Aligned_cols=165 Identities=12% Similarity=0.072 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhc-cCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHH
Q psy742 190 VITQAVSWVLDH-QTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIK 268 (713)
Q Consensus 190 ~I~~ai~WL~~~-Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~ 268 (713)
..++.++||.+. |..+|+|.... ..+.++.-|++.+|.-.+. ... ...++++++
T Consensus 74 ~~~~hi~~l~~~lq~~~gg~~a~D-------------------~~r~~l~y~~l~aL~lLg~-----~~~-~~~~~r~v~ 128 (437)
T 2h6f_B 74 QREKHFHYLKRGLRQLTDAYECLD-------------------ASRPWLCYWILHSLELLDE-----PIP-QIVATDVCQ 128 (437)
T ss_dssp CHHHHHHHHHHHTTEECGGGGGGT-------------------TCHHHHHHHHHHHHHHTTC-----CCC-HHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCCCccccc-------------------CCCccHHHHHHHHHHHhCC-----CCC-HHHHHHHHH
Confidence 368899999998 88899987621 1235676567777743331 111 246799999
Q ss_pred HHHHhhhhc---c--CCC--ChHHHHHHHHHHHhcCC------ccHHHHHHHHHHhhhccCCceeecCCCCCCCCCCccC
Q psy742 269 WLERNLRLL---K--DFG--DPYEVAIVAYALRLSKA------TIAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIEN 335 (713)
Q Consensus 269 yLe~~~~~~---~--~~~--~~YtlAl~aYALaLa~~------~~~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~ 335 (713)
||.+.-..- . .++ +.+.-.-+.-||++.+. ++.+.+.+-|++.+..+|+ |....
T Consensus 129 ~l~s~Q~~dGGf~g~~~~~~~i~~T~~Al~aL~~lg~~~~~~~i~i~kav~~L~s~Q~~DGs---f~~~~---------- 195 (437)
T 2h6f_B 129 FLELCQSPEGGFGGGPGQYPHLAPTYAAVNALCIIGTEEAYDIINREKLLQYLYSLKQPDGS---FLMHV---------- 195 (437)
T ss_dssp HHHHHBCTTSSBBSSTTCCBCHHHHHHHHHHHHHHCCHHHHTTSCHHHHHHHHHTTBCTTSC---BBSST----------
T ss_pred HHHHhCCCCCCcCCccCCCcchhHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhCCCCCC---eeecC----------
Confidence 999864211 0 111 33333344456666664 3456788888877665553 32110
Q ss_pred CCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc---chhHHHHHHHhcccCCCCccchh-------hHHHHHHHHHHH
Q psy742 336 QKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL---LTDPIVKWLNSQRLTDGGWASTQ-------DTAMAMKALIEY 404 (713)
Q Consensus 336 ~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~---~a~~Iv~WL~~Qrn~~GGF~STQ-------DTvvALqALa~Y 404 (713)
| + ..++.-|-.|+.++-..+.. ...+.++||.+.||.+|||+... -|.+||.||...
T Consensus 196 ----~-------G-e~d~~~ty~A~~~L~llg~~~~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL~~l 262 (437)
T 2h6f_B 196 ----G-------G-EVDVRSAYCAASVASLTNIITPDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAALVIL 262 (437)
T ss_dssp ----T-------C-CBSHHHHHHHHHHHHHTTCCCTTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHHHHH
T ss_pred ----C-------C-CccchhHHHHHHHHHHhCCCChHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHHHHc
Confidence 0 0 23455553333333333332 56789999999999999997532 388999999753
No 34
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=97.25 E-value=0.0013 Score=71.51 Aligned_cols=93 Identities=15% Similarity=0.240 Sum_probs=69.1
Q ss_pred ChHHHHHHHHHHHhcCCccHHHHHHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHH
Q psy742 282 DPYEVAIVAYALRLSKATIAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALL 361 (713)
Q Consensus 282 ~~YtlAl~aYALaLa~~~~~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALL 361 (713)
+-|..|+...||-.+|..-...+.++|-.....+ .|+. +...+|-|||+|+|
T Consensus 135 n~Yq~sL~vLALC~~g~~v~~~~v~~Ll~~~~~~---~~~~-------------------------g~~~sVDT~AMA~l 186 (414)
T 2bb6_A 135 SYYQYSLGILALCVHQKRVHDSVVGKLLYAVEHK---PHLL-------------------------QDHVSVDTMAMAGM 186 (414)
T ss_dssp CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHSS---SCSC-------------------------CTTTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCCccHHHHHHHHHHhhcc---CcCC-------------------------CCcccccHHHHHHH
Confidence 4589999999999998776556777776544321 1221 12468999999999
Q ss_pred HHhhcCC----------c-c-hhHHHHHHHhcccCCCCccchhhHHHHHHHHH
Q psy742 362 VYVSRQE----------L-L-TDPIVKWLNSQRLTDGGWASTQDTAMAMKALI 402 (713)
Q Consensus 362 a~l~~~~----------~-~-a~~Iv~WL~~Qrn~~GGF~STQDTvvALqALa 402 (713)
|+...++ + . ...+++||.++|+.+|+|+..-.|..|+|||.
T Consensus 187 AL~C~~~~~~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FGN~~ST~lA~QAL~ 239 (414)
T 2bb6_A 187 AFSCLELSNLNPKQRNRINLALKRVQEKILKAQTPEGYFGNVYSTPLALQLLM 239 (414)
T ss_dssp HHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTBCTTSCBSSTTTHHHHHHHHT
T ss_pred HHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHHHH
Confidence 9987533 1 1 12456999999999999999999999999995
No 35
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=97.14 E-value=0.0024 Score=69.24 Aligned_cols=88 Identities=18% Similarity=0.180 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHH
Q psy742 284 YEVAIVAYALRLSKATIAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVY 363 (713)
Q Consensus 284 YtlAl~aYALaLa~~~~~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~ 363 (713)
|..|+...||-+++.+-...+.++|-.....++ ...+|-|+|+|.||+
T Consensus 115 Yq~sL~vLALC~~~~~v~~~~v~kLl~~~~~~g--------------------------------~~~sVDT~AMa~LAL 162 (399)
T 2pmv_A 115 YGPSLAILALCQKNSEATLPIAVRFAKTLLANS--------------------------------SPFNVDTGAMATLAL 162 (399)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC--------------------------------SCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC--------------------------------CcccchHHHHHHHHH
Confidence 999999999999987766677777765543221 135789999999998
Q ss_pred hhcCC-------------c--chhHHHHHHHhcccCCCCccchhhHHHHHHHHHH
Q psy742 364 VSRQE-------------L--LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIE 403 (713)
Q Consensus 364 l~~~~-------------~--~a~~Iv~WL~~Qrn~~GGF~STQDTvvALqALa~ 403 (713)
.-..+ + ....++++|.++|+.+|+|+.+-.|..|+|||..
T Consensus 163 ~C~~~~~~~~~~~~~~~~i~~ai~~~~~~l~~~q~~dG~fGn~yST~LA~QAL~~ 217 (399)
T 2pmv_A 163 TCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIGDIYSTGLAMQALSV 217 (399)
T ss_dssp HHHHTBCCTTCCSSHHHHHHHHHHHHHHHHTTSBCTTSCBSSHHHHHHHHHHHHH
T ss_pred HHHhhccccccchhhHHHHHHHHHHHHHHHHHhhcCCCcccccccHHHHHHHHHh
Confidence 86544 2 3346889999999999999999999999999964
No 36
>2icn_B Prolactin-inducible protein; beta-pleated sheet, complex, seminal fluid; HET: NAG BMA MAN P6G; 3.23A {Homo sapiens} PDB: 3es6_B*
Probab=97.12 E-value=0.0013 Score=59.28 Aligned_cols=78 Identities=4% Similarity=0.034 Sum_probs=65.5
Q ss_pred ccceeEeeeeeEE-----EEEEEEEEeeCCCEEEEeccCCCccceeeEEeeCCcccccccccEEEEEEEEecceeeEEEE
Q psy742 15 AGQENMQSTIRSF-----AVSLSAEMAPSATIVVYNVGRNGDVIADSLTFPVNGISRNNVNATVVFLPIVPVHLGDIDVT 89 (713)
Q Consensus 15 ~~~~~~~~~~~~f-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~F~I~p~~lG~i~I~ 89 (713)
..||.+++-.+|| ||.|+|+|.+|+.+.... ...++-+.++++ .++.+|.|.|.. +++|+
T Consensus 19 ~rgE~f~lkatVfNyL~~Ci~V~v~L~~S~~~~~~~------~~~~s~ClC~~~-------~ktf~W~v~~~~--~Vnit 83 (118)
T 2icn_B 19 RPNDEVTAVLAVQTELKECMVVKTYLISSIPLQGAF------NYKYTACLCDDN-------PKTFYWDFYTNR--TVQIA 83 (118)
T ss_dssp CSSCCEEEEEEEEECCSSCEEEEEEEEESSCCCGGG------GCEEEEEECSSS-------CEEEEEEECCSS--CEEEE
T ss_pred cCCCEEEEEEEEEeccCcCEEEEEEEcCCCCeEeec------CCcCCEEECCCC-------CEEEEEEEEECc--EEEEE
Confidence 5689999999999 679999999999887642 256888999998 899999999995 89999
Q ss_pred EEEEec----------------CCCceEEEEEEE
Q psy742 90 VTASSL----------------IGRDTVTRKLHI 107 (713)
Q Consensus 90 V~A~s~----------------~~sD~V~~~L~V 107 (713)
|+|... ..+|.|.|+|+|
T Consensus 84 v~ae~~~~~~iC~n~~~~vp~~g~~dtvik~LlV 117 (118)
T 2icn_B 84 AVVDVIRELGICPDDAAVIPIKNNRFYTIEILKV 117 (118)
T ss_dssp EEEEECCCSSSSGGGCCCCCSSCCEECCEEEEEE
T ss_pred EEEEEEcCCCCCCCCccccCCcCcEEEEEEEEEe
Confidence 988742 257899999987
No 37
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=96.80 E-value=0.0084 Score=64.96 Aligned_cols=199 Identities=13% Similarity=0.153 Sum_probs=111.3
Q ss_pred hhhhhhHH---hhhhhcc-CCCHHHHHHHHHHHHhccC---------CCcceeecccc--ccccccccCCCCCCCcccCc
Q psy742 170 LWYSCLLC---LYIWETL-MLPLQVITQAVSWVLDHQT---------PDGSFYETTWL--VDRKVNSSLNWPNDDVKFRN 234 (713)
Q Consensus 170 tWL~TAfV---F~qa~~~-~ID~~~I~~ai~WL~~~Q~---------~dG~F~e~g~v--~h~~m~g~~~Gg~~~~~~~~ 234 (713)
.|+ +=|+ +...... .+| .+++++||.+.|. +||+|.-.... +..++.. ...+ .......
T Consensus 48 ~~~-~yw~l~~L~lLg~l~~~~---~~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~-~~~~-~~~d~~~ 121 (377)
T 1n4q_B 48 LTI-AFFALSGLDMLDSLDVVN---KDDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKN-PGTA-HPYDSGH 121 (377)
T ss_dssp HHH-HHHHHHHHHHTTCGGGSC---HHHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCS-CCCC-CTTCCCC
T ss_pred HHH-HHHHHHHHHHhCCCCccC---HHHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhcc-cccc-ccCCCCC
Confidence 677 6565 3333434 444 7899999999998 68999753311 1001100 0000 0012356
Q ss_pred ceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHHhhhh---cc---CCCC-----hHHHHHHHHHHHhcCCccHHH
Q psy742 235 ISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRL---LK---DFGD-----PYEVAIVAYALRLSKATIAEA 303 (713)
Q Consensus 235 v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~~~~---~~---~~~~-----~YtlAl~aYALaLa~~~~~~~ 303 (713)
+..|.+++.+|.--++ .+.. ...+++++||++.-.. .. .++. .|...-+.++|.....+..+.
T Consensus 122 v~~T~~Al~~L~~lg~---~~~~---id~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~~~~~v~k 195 (377)
T 1n4q_B 122 IAMTYTGLSCLIILGD---DLSR---VDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKK 195 (377)
T ss_dssp HHHHHHHHHHHHHTTC---CSTT---SCHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCGGGSCHHH
T ss_pred HHHHHHHHHHHHHhCc---ccch---hhHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCCChHHHHH
Confidence 8889999888865442 2221 1348899999985421 11 1221 344322223332222345678
Q ss_pred HHHHHHHhhhccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc-------chhHHHH
Q psy742 304 AFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-------LTDPIVK 376 (713)
Q Consensus 304 al~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-------~a~~Iv~ 376 (713)
+.+-|.+....+|| |+..+. .+| ..-.|+.|+.++...+.. .....++
T Consensus 196 a~~fL~scQn~DGG---fGe~p~---------------------~ES-h~g~T~cAlaaL~llg~~~~~~~~~~~~rli~ 250 (377)
T 1n4q_B 196 AISYIRRSMSYDNG---LAQGAG---------------------LES-HGGSTFCGIASLCLMGKLEEVFSEKELNRIKR 250 (377)
T ss_dssp HHHHHHHTBCTTSS---BBSSTT---------------------SCB-CHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCC---CCCCCC---------------------CCC-chhHHHHHHHHHHHhcCcccccchhhHHHHHH
Confidence 88989888777765 654320 112 233454444444444433 2357899
Q ss_pred HHHhcccCCCCccc----hhhHHHHHHHHHHHHHh
Q psy742 377 WLNSQRLTDGGWAS----TQDTAMAMKALIEYTNR 407 (713)
Q Consensus 377 WL~~Qrn~~GGF~S----TQDTvvALqALa~Ya~~ 407 (713)
||.+.| .|||.- --||+++--.++.+...
T Consensus 251 wL~~rQ--~gGf~GR~nK~~D~CYSfWv~~~l~iL 283 (377)
T 1n4q_B 251 WCIMRQ--QNGYHGRPNKPVDTCYSFWVGATLKLL 283 (377)
T ss_dssp HHHTTB--SSSBCSSTTSCCCTTHHHHHHHHHHHT
T ss_pred HHHhcC--CCCcCCCCCcchhHHHHHHHHHHHHHh
Confidence 999887 799953 24888877777776554
No 38
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=96.69 E-value=0.013 Score=65.55 Aligned_cols=207 Identities=15% Similarity=0.169 Sum_probs=109.1
Q ss_pred hhhhhhHHhhhhhcc--CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHh
Q psy742 170 LWYSCLLCLYIWETL--MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247 (713)
Q Consensus 170 tWL~TAfVF~qa~~~--~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~e 247 (713)
.|| .=|++.-..-. .+|+...+++++||.+.|.+||+|.-.... + ....+..|.+++.+|.-
T Consensus 89 ~wl-~Yw~l~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~~----------~-----~~~hla~TysAV~aL~i 152 (520)
T 3q7a_B 89 PWL-VFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPAN----------S-----QIPHLLPTYASVCSLAI 152 (520)
T ss_dssp HHH-HHHHHHHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCTT----------T-----SCCCHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCCC----------C-----CCCcHHHHHHHHHHHHH
Confidence 787 44443322222 578888999999999999999999752110 1 23568889999999876
Q ss_pred cccccCCCCCc-hhHHHHHHHHHHHHhhhh-cc----CCC--ChHHHHHHHHHHHhcCC---ccHHHHHHHHHHhhhccC
Q psy742 248 VKDLTGGLGAR-VSLAQSKAIKWLERNLRL-LK----DFG--DPYEVAIVAYALRLSKA---TIAEAAFGILTQHARSEG 316 (713)
Q Consensus 248 a~~l~~g~~~~-~~~~~~kA~~yLe~~~~~-~~----~~~--~~YtlAl~aYALaLa~~---~~~~~al~~L~~~a~~~~ 316 (713)
.++..++.... +...+.++++||++.-.. -. .++ +.|..-.+.-+|.+.+. +..+.+.+-|.+....+|
T Consensus 153 lg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~~~~~v~kav~fI~scQn~DG 232 (520)
T 3q7a_B 153 AGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDIITPELLHNVDKFVSACQTYEG 232 (520)
T ss_dssp HCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCCCHHHHTTHHHHHHTTBCTTS
T ss_pred hCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcCCCC
Confidence 55422222111 112267899999986532 00 122 33333333334444443 234567788877776666
Q ss_pred CceeecCCC----CCCCC-CCccCCCCCCCCCCCCCCCcc-hhhHHHHHHHHHhhcC------Cc-chhHHHHHHHhccc
Q psy742 317 GLTYWGKEP----VPAPP-SKIENQKPFLLPRLPYKYDAI-NIETTAYALLVYVSRQ------EL-LTDPIVKWLNSQRL 383 (713)
Q Consensus 317 ~~~~W~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~s~-~VEtTAYALLa~l~~~------~~-~a~~Iv~WL~~Qrn 383 (713)
| |+... .+.+. +.....+|.- |.|. .+|- ----.|.|-|+++..- .. ....+++||...|.
T Consensus 233 G---fGe~s~~~~~~~~~~~~~~~~rp~~--~~Pg-~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~ 306 (520)
T 3q7a_B 233 G---FACASFPFPSVVPSTSAFPTSEPSC--RVSM-AEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQG 306 (520)
T ss_dssp S---BCSCEEEEC------------CCSE--EEEC-SCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBC
T ss_pred C---ccCcccccccccccccccccccccc--CCCC-CccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCC
Confidence 5 54410 00000 0000001100 0010 1110 1112344555555542 23 67899999998885
Q ss_pred ---CCCCccc-h---hhHHHHH
Q psy742 384 ---TDGGWAS-T---QDTAMAM 398 (713)
Q Consensus 384 ---~~GGF~S-T---QDTvvAL 398 (713)
..|||.- | -||+++-
T Consensus 307 ~~~e~GGF~GR~NKlvD~CYSf 328 (520)
T 3q7a_B 307 EPIEGGGFRGRTNKLVDGCYSW 328 (520)
T ss_dssp CGGGTTCBBSSTTSCBCTTHHH
T ss_pred cccCCCcccCCCCCCCchhhhh
Confidence 3599964 2 4766543
No 39
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=96.46 E-value=0.061 Score=58.17 Aligned_cols=175 Identities=13% Similarity=0.090 Sum_probs=96.5
Q ss_pred hhHH---hhhhh-cc-CCCHHHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhc
Q psy742 174 CLLC---LYIWE-TL-MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTV 248 (713)
Q Consensus 174 TAfV---F~qa~-~~-~ID~~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea 248 (713)
|.++ +.... .+ .||. .++++||.+.|++||+|.... .| | +.++..|=.++.+|.-.
T Consensus 125 T~~Al~~L~~lg~~~~~id~---~~~~~fL~~~Q~~DGSf~g~~-----~w-----G------e~DirftY~Al~~l~ll 185 (377)
T 1n4q_B 125 TYTGLSCLIILGDDLSRVDK---EACLAGLRALQLEDGSFCAVP-----EG-----S------ENDMRFVYCASCICYML 185 (377)
T ss_dssp HHHHHHHHHHTTCCSTTSCH---HHHHHHHHHHBCTTSCBCSST-----TC-----C------CCBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcccchhhH---HHHHHHHHHhcCCCCCeeecc-----CC-----C------cchhHHHHHHHHHHHHh
Confidence 6555 33333 45 6774 789999999999999997631 11 2 23444443333333222
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhhhhccCCC-C-------hHH-HHHHHHHHHhcCCcc-------HHHHHHHHHHhh
Q psy742 249 KDLTGGLGARVSLAQSKAIKWLERNLRLLKDFG-D-------PYE-VAIVAYALRLSKATI-------AEAAFGILTQHA 312 (713)
Q Consensus 249 ~~l~~g~~~~~~~~~~kA~~yLe~~~~~~~~~~-~-------~Yt-lAl~aYALaLa~~~~-------~~~al~~L~~~a 312 (713)
+. .. ...++||++||.+.-..-..++ . .|| -|++ ||++++..+ .+.+..-|.+++
T Consensus 186 g~----~~---~~~v~ka~~fL~scQn~DGGfGe~p~~ESh~g~T~cAla--aL~llg~~~~~~~~~~~~rli~wL~~rQ 256 (377)
T 1n4q_B 186 NN----WS---GMDMKKAISYIRRSMSYDNGLAQGAGLESHGGSTFCGIA--SLCLMGKLEEVFSEKELNRIKRWCIMRQ 256 (377)
T ss_dssp TC----GG---GSCHHHHHHHHHHTBCTTSSBBSSTTSCBCHHHHHHHHH--HHHHHTCHHHHSCHHHHHHHHHHHHTTB
T ss_pred cC----CC---hHHHHHHHHHHHHhcCCCCCCCCCCCCCCchhHHHHHHH--HHHHhcCcccccchhhHHHHHHHHHhcC
Confidence 21 11 2357999999999753210010 1 122 1333 355555443 234445555443
Q ss_pred hccCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcC--Cc-chhHHHHHHHhcccC-CCCc
Q psy742 313 RSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ--EL-LTDPIVKWLNSQRLT-DGGW 388 (713)
Q Consensus 313 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~--~~-~a~~Iv~WL~~Qrn~-~GGF 388 (713)
++|..-. | +...|++=+=|++-++-.++ .+ ....+.+||.+-|+. .|||
T Consensus 257 --~gGf~GR-----------------------~--nK~~D~CYSfWv~~~l~iL~~~~~~d~~~l~~fil~cQ~~~~GGf 309 (377)
T 1n4q_B 257 --QNGYHGR-----------------------P--NKPVDTCYSFWVGATLKLLKIFQYTNFEKNRNYILSTQDRLVGGF 309 (377)
T ss_dssp --SSSBCSS-----------------------T--TSCCCTTHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTTCSB
T ss_pred --CCCcCCC-----------------------C--CcchhHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHcCCCCCCc
Confidence 4433211 1 11234444434444433333 34 778999999888888 9999
Q ss_pred cchh----h---HHHHHHHHHH
Q psy742 389 ASTQ----D---TAMAMKALIE 403 (713)
Q Consensus 389 ~STQ----D---TvvALqALa~ 403 (713)
+--. | |.+||-+|+-
T Consensus 310 ~~~p~~~~D~~HT~~~LagLsl 331 (377)
T 1n4q_B 310 AKWPDSHPDALHAYFGICGLSL 331 (377)
T ss_dssp CSSTTSCCBHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHh
Confidence 8653 3 8888888874
No 40
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=95.74 E-value=0.0017 Score=82.72 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHH
Q psy742 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIK 268 (713)
Q Consensus 189 ~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~ 268 (713)
+.|+.++..++++|++||+|...+ + ..++.||||||+.+|.+|+++ ++..+ ...+.+|++
T Consensus 1030 ~~i~~Gyqr~l~yq~~DGsfs~w~-------------~----~~~stWLTAyV~k~f~~A~~~--i~~Vd-~~~l~~~~~ 1089 (1642)
T 3prx_B 1030 NQIVTGYAQQMVYKKADHSYAAFT-------------N----RASSSWLTAYVVKVFAMAAKM--VAGIS-HEIICGGVR 1089 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCCCeecCC-------------C----CCCccccHHHHHHHHHHHHhh--ccCCC-HHHHHHHHH
Confidence 457788999999999999998833 1 235689999999999999863 22121 368899999
Q ss_pred HHHH
Q psy742 269 WLER 272 (713)
Q Consensus 269 yLe~ 272 (713)
||..
T Consensus 1090 wL~~ 1093 (1642)
T 3prx_B 1090 WLIL 1093 (1642)
T ss_dssp ----
T ss_pred HHHh
Confidence 9975
No 41
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=93.76 E-value=0.6 Score=50.59 Aligned_cols=189 Identities=19% Similarity=0.192 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhccCCCcceeeccccccccc--ccc-------------------CCCCC-CCcccCcceehHHHHHHHHh
Q psy742 190 VITQAVSWVLDHQTPDGSFYETTWLVDRKV--NSS-------------------LNWPN-DDVKFRNISLTAHVLITLDT 247 (713)
Q Consensus 190 ~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m--~g~-------------------~~Gg~-~~~~~~~v~LTAyVliaL~e 247 (713)
.-++..++|+..|.++|+|...... +..+ .+. +..+. .....=|.--||-|+++|..
T Consensus 82 ~A~~iAd~ll~~Q~~~GGW~kn~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~r 160 (408)
T 1r76_A 82 AARHVADVIVSFQTPAGGWGKNQPR-DGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLAQ 160 (408)
T ss_dssp HHHHHHHHHHHHCCTTSCCCSSCCS-SSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccccCCCCCCcccc-ccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHHH
Confidence 3578899999999999999774321 1110 000 00000 00011134469999999988
Q ss_pred cccc-cCCCCCchhHHHHHHHHHHHHhhhh-----------------ccCCCChHHHHHHHHHHHhcCC-----------
Q psy742 248 VKDL-TGGLGARVSLAQSKAIKWLERNLRL-----------------LKDFGDPYEVAIVAYALRLSKA----------- 298 (713)
Q Consensus 248 a~~l-~~g~~~~~~~~~~kA~~yLe~~~~~-----------------~~~~~~~YtlAl~aYALaLa~~----------- 298 (713)
+... .+.-...+..++.||++||...-.. +. ++|. ..+-+.-.|...+.
T Consensus 161 v~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~Ip-FnDD-vt~rvle~L~~~~~~~~~~~~~~~~ 238 (408)
T 1r76_A 161 VVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAIT-YNDD-ALVHVAELLSDIAAGRDGFGFVPPA 238 (408)
T ss_dssp HHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEE-CGGG-HHHHHHHHHHHHHHTCTTCTTSCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCC-cCcH-HHHHHHHHHHHHHhccCcccccchh
Confidence 6542 1001123457899999999876311 11 1111 11222212211111
Q ss_pred ------ccHHHHHHHHHHhhhc-cCCceeecCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCc--
Q psy742 299 ------TIAEAAFGILTQHARS-EGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQEL-- 369 (713)
Q Consensus 299 ------~~~~~al~~L~~~a~~-~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~~-- 369 (713)
+....+++-|.+.+.. +|.-.-|..... +....|.+. |+ +...++.--.|+.+|+.+|.....
T Consensus 239 ~~~~~~~av~Rgi~~Ll~~Qe~~dGsw~rWg~qY~------ygT~~Pa~a-Rs-YE~psLs~~esa~il~~LM~~~~~~~ 310 (408)
T 1r76_A 239 IRTRALEATNAAIHCIVETQVVQDGKRLGWGQQHD------ALTLRPTSA-RN-FEPAALSSTESARILLFLMEIEAPSD 310 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCEETTEECCCCSEEC------TTTCSBCCC-ST-TCCSCEEHHHHHHHHHHHTTSSSCCH
T ss_pred hhhhHHHHHHHHHHHHHHhhcccCCcccchhcccc------cccCcchhh-hc-cCCccccHHHHHHHHHHHccCCCCCH
Confidence 1124566666665554 443334543221 011122111 10 112355555567788888887653
Q ss_pred ----chhHHHHHHHhcccCCCCcc
Q psy742 370 ----LTDPIVKWLNSQRLTDGGWA 389 (713)
Q Consensus 370 ----~a~~Iv~WL~~Qrn~~GGF~ 389 (713)
.....+.||.+.|+.+|+|.
T Consensus 311 ~~~~aI~~Av~WL~s~Q~~dg~w~ 334 (408)
T 1r76_A 311 AVKQAIRGGVAWLNTSVIRDRAWV 334 (408)
T ss_dssp HHHHHHHHHHHHHHHSCCCC----
T ss_pred HHHHHHHHHHHHHHHhhcCCCcee
Confidence 35689999999999999998
No 42
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=90.85 E-value=1.8 Score=47.01 Aligned_cols=55 Identities=16% Similarity=0.013 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHhhcCCc-chhHHHHHHHhcccC---CCCccchhhHHHHHHHHHHHHHh
Q psy742 353 IETTAYALLVYVSRQEL-LTDPIVKWLNSQRLT---DGGWASTQDTAMAMKALIEYTNR 407 (713)
Q Consensus 353 VEtTAYALLa~l~~~~~-~a~~Iv~WL~~Qrn~---~GGF~STQDTvvALqALa~Ya~~ 407 (713)
.=.-|+++||+...+.. ...-|.+||..|.+. .|+|.|.-+|+||++||.-....
T Consensus 136 ~Yq~sL~vLALC~~g~~v~~~~v~~Ll~~~~~~~~~~g~~~sVDT~AMA~lAL~C~~~~ 194 (414)
T 2bb6_A 136 YYQYSLGILALCVHQKRVHDSVVGKLLYAVEHKPHLLQDHVSVDTMAMAGMAFSCLELS 194 (414)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHSSSCSCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCccHHHHHHHHHHhhccCcCCCCcccccHHHHHHHHHHHHhhc
Confidence 33457999999998876 444455555545432 37888999999999999887653
No 43
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=90.73 E-value=0.24 Score=52.16 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcc
Q psy742 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVK 249 (713)
Q Consensus 189 ~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~ 249 (713)
+.+.++++||++.|-+||+|.-.-+.- +.+...++- .| -.||.|+-.|.+..
T Consensus 97 ~Ai~Rgl~wlL~mQ~~nGGWpqFdpd~-~~Yl~~IpF-------nD-DvtarvLelL~~~~ 148 (332)
T 1gxm_A 97 DAVRKAANFLVNSQYSTGALPQFYPLK-GGYSDHATF-------ND-NGMAYALTVLDFAA 148 (332)
T ss_dssp HHHHHHHHHHHHHCCTTSCCBSEESCC-SGGGGSEEC-------GG-GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCccccCCCc-ccccccCCc-------ch-HHHHHHHHHHHHHH
Confidence 668999999999999999986543321 111111111 11 36999999998775
No 44
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=88.17 E-value=1.8 Score=48.37 Aligned_cols=119 Identities=12% Similarity=0.096 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhhhhccC---CCChHHHHH---HHHHHHhcCCc----cHHHHHHHHHHhhhccCCceeecCCCCCCCCC
Q psy742 262 AQSKAIKWLERNLRLLKD---FGDPYEVAI---VAYALRLSKAT----IAEAAFGILTQHARSEGGLTYWGKEPVPAPPS 331 (713)
Q Consensus 262 ~~~kA~~yLe~~~~~~~~---~~~~YtlAl---~aYALaLa~~~----~~~~al~~L~~~a~~~~~~~~W~~~~~~~~~~ 331 (713)
..++-++||.+.+..+.. ..|.--..+ ..-||.+.|.+ ..+.+.+.|.+....+||..-|..
T Consensus 62 ~~~~Hi~yl~~~L~~LP~~y~~~Dasr~wl~Yw~l~aL~LLg~~ld~~~~~~~I~~Ils~Q~~dGGFgg~p~-------- 133 (520)
T 3q7a_B 62 RKQEHTQFLASSFFQLPGKFVSLDASRPWLVFWTVHSLDLLGVALDQGTKDRVVSTLLHFLSPKGGFGGGPA-------- 133 (520)
T ss_dssp CHHHHHHHHHHHHSCBCGGGGGGGGGHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTBCTTSSBCSSCT--------
T ss_pred CHHHHHHHHHHHhhhCChhhhhcccchHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCCCCC--------
Confidence 346778888888754320 002111222 33367777732 234666767665544444333321
Q ss_pred CccCCCCCCCCCCCCCCCcchhhHHHHHHHHHhhcCC------c---c--hhHHHHHHHhcccCCCCccch-------hh
Q psy742 332 KIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQE------L---L--TDPIVKWLNSQRLTDGGWAST-------QD 393 (713)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~s~~VEtTAYALLa~l~~~~------~---~--a~~Iv~WL~~Qrn~~GGF~ST-------QD 393 (713)
.+....+++|..||++|...+. . . -..+++||.+.|+.+|+|... --
T Consensus 134 ---------------~~~~~hla~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~ 198 (520)
T 3q7a_B 134 ---------------NSQIPHLLPTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRG 198 (520)
T ss_dssp ---------------TTSCCCHHHHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHH
T ss_pred ---------------CCCCCcHHHHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHH
Confidence 0234689999999999988754 2 2 557999999999999999763 34
Q ss_pred HHHHHHHHHH
Q psy742 394 TAMAMKALIE 403 (713)
Q Consensus 394 TvvALqALa~ 403 (713)
|..|+-+|..
T Consensus 199 TY~Al~~L~l 208 (520)
T 3q7a_B 199 TYCLLVVATL 208 (520)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5556655543
No 45
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=85.77 E-value=7.1 Score=42.14 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=26.8
Q ss_pred chhHHHHHHHhcccCCCCccchh-------hHHHHHHHHH
Q psy742 370 LTDPIVKWLNSQRLTDGGWASTQ-------DTAMAMKALI 402 (713)
Q Consensus 370 ~a~~Iv~WL~~Qrn~~GGF~STQ-------DTvvALqALa 402 (713)
....+++|+.+.|++.|||+... =|..|+-||+
T Consensus 192 d~~~~~~~I~~cq~ydGGfg~~p~~EsH~G~TfCalaaL~ 231 (390)
T 3dra_B 192 DLISLQQFILDRININGGFSSTIMDESHLGFTFCAIASLK 231 (390)
T ss_dssp CHHHHHHHHHTTBCTTSCBCSSTTSCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCCCcCCCCCcccccchhHHHHHHHH
Confidence 56899999999999999999763 2666766665
No 46
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=84.82 E-value=5.1 Score=43.24 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=28.0
Q ss_pred chhHHHHHHHh-cccC-CCCccchh----h---HHHHHHHHHHHH
Q psy742 370 LTDPIVKWLNS-QRLT-DGGWASTQ----D---TAMAMKALIEYT 405 (713)
Q Consensus 370 ~a~~Iv~WL~~-Qrn~-~GGF~STQ----D---TvvALqALa~Ya 405 (713)
...++.+||.. |++. .|||+-.- | |.++|-+|+-..
T Consensus 317 d~~~l~~yiL~c~Q~~~~GGf~d~Pg~~pD~yHT~~gLagLsl~~ 361 (390)
T 3dra_B 317 DLNKAEDYLLNKTQNQLFGGFGRDPDSTPDPMHSYLALASLSLWN 361 (390)
T ss_dssp CHHHHHHHHHHTTBCTTTCSBCSSTTSCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCCCCcCCCCCCCCchHHHHHHHHHHHHcC
Confidence 78899999877 5675 89998542 3 889999998653
No 47
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=79.77 E-value=2.5 Score=45.78 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhccCCCcceeecccc---ccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCC-------Cc
Q psy742 189 QVITQAVSWVLDHQTPDGSFYETTWL---VDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLG-------AR 258 (713)
Q Consensus 189 ~~I~~ai~WL~~~Q~~dG~F~e~g~v---~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~-------~~ 258 (713)
+.+.++++||++.|.+||+|.-.-+. +|..+ . -. .-.|+.|+-.|.....-..++. ..
T Consensus 175 ~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~I----p-------Fn-DDvt~rvle~L~~~~~~~~~~~~~~~~~~~~ 242 (408)
T 1r76_A 175 DAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAI----T-------YN-DDALVHVAELLSDIAAGRDGFGFVPPAIRTR 242 (408)
T ss_dssp HHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSE----E-------CG-GGHHHHHHHHHHHHHHTCTTCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCcCcCccccccccCC----C-------cC-cHHHHHHHHHHHHHHhccCcccccchhhhhh
Confidence 66899999999999999998654332 22222 1 11 2369999999977753101110 12
Q ss_pred hhHHHHHHHHHHHHhh
Q psy742 259 VSLAQSKAIKWLERNL 274 (713)
Q Consensus 259 ~~~~~~kA~~yLe~~~ 274 (713)
...+++||++||.+.-
T Consensus 243 ~~~av~Rgi~~Ll~~Q 258 (408)
T 1r76_A 243 ALEATNAAIHCIVETQ 258 (408)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3468999999998863
No 48
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=77.59 E-value=4.4 Score=43.77 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhH-HHHHHH
Q psy742 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSL-AQSKAI 267 (713)
Q Consensus 189 ~~I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~-~~~kA~ 267 (713)
..|.+.+.+|+++|++||+|.. +.-|+.++=||..++... . .. ...+|+
T Consensus 183 ~ai~~~~~~l~~~q~~dG~fGn------------------------~yST~LA~QAL~~~~~~~----~--~~W~c~~al 232 (399)
T 2pmv_A 183 QVLKDIVEKISMKIKDNGIIGD------------------------IYSTGLAMQALSVTPEPS----K--KEWNCKKTT 232 (399)
T ss_dssp HHHHHHHHHHTTSBCTTSCBSS------------------------HHHHHHHHHHHHHCSSCC----S--SCCCHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcccc------------------------cccHHHHHHHHHhcCCCc----c--ccccHHHHH
Confidence 5678888889999999999832 456999999998876411 1 12 468899
Q ss_pred HHHHHhhhhccCCCChHHHHHHHHHH
Q psy742 268 KWLERNLRLLKDFGDPYEVAIVAYAL 293 (713)
Q Consensus 268 ~yLe~~~~~~~~~~~~YtlAl~aYAL 293 (713)
++|.+++..- .+++|.+.|-+.=||
T Consensus 233 ~~l~~q~~~G-~F~np~~taQilPaL 257 (399)
T 2pmv_A 233 DMILNEIKQG-KFHNPMSIAQILPSL 257 (399)
T ss_dssp HHHHHHHTTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHhhCC-CcCCHHHHHHHHHHh
Confidence 9999876554 355776666554444
No 49
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=64.63 E-value=5.8 Score=46.23 Aligned_cols=64 Identities=22% Similarity=0.347 Sum_probs=44.9
Q ss_pred HHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHH
Q psy742 191 ITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWL 270 (713)
Q Consensus 191 I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yL 270 (713)
.-+.++||+++|.+||+|...+... ..+.+.-|.=.++||..-+ .. ...++|++.||
T Consensus 52 Fp~~~~wil~nQ~~DGsWG~~~~~~---------------~~D~ll~TLAcvlAL~~w~-----~~---~~~i~rGl~fl 108 (727)
T 3pya_A 52 FPSAVKWIAENQLSDGSWGDAYLFS---------------YHDRLINTLACVVALRSWN-----LF---PHQCNKGITFF 108 (727)
T ss_dssp CHHHHHHHHHTCCTTSCCSCSSSCC---------------HHHHHHHHHHHHHHHHHTT-----CC---HHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCCCCCCCCCCcc---------------hhhHHHHHHHHHHHHHHcc-----CC---HHHHHHHHHHH
Confidence 4678999999999999986533100 1123556777788886522 11 24789999999
Q ss_pred HHhhhhc
Q psy742 271 ERNLRLL 277 (713)
Q Consensus 271 e~~~~~~ 277 (713)
++++..+
T Consensus 109 ~~nl~~~ 115 (727)
T 3pya_A 109 RENIGKL 115 (727)
T ss_dssp HHHGGGT
T ss_pred HHHHHHh
Confidence 9999765
No 50
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=62.42 E-value=6.7 Score=46.44 Aligned_cols=65 Identities=26% Similarity=0.456 Sum_probs=45.2
Q ss_pred HHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHH
Q psy742 191 ITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWL 270 (713)
Q Consensus 191 I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yL 270 (713)
.-+.++||+++|.+||+|...+.. ...+.+.-|.=.++||..-. .. ...++|++.||
T Consensus 103 Fp~~~~wil~nQ~~DGsWg~~~~~---------------~~~d~ll~TlAcvlAL~~w~-----~~---~~~i~~Gl~fl 159 (817)
T 3sdr_A 103 FPQTVDWILKNQLKDGSWGIQSHF---------------LLSDRLLATLSCVLVLLKWN-----VG---DLQVEQGIEFI 159 (817)
T ss_dssp SHHHHHHHHHCCCTTSCCSCTTCC---------------CHHHHHHHHHHHHHHHHHTT-----CC---HHHHHHHHHHH
T ss_pred chHHHHHHHHccCCCCCCCCCCCc---------------chHHHHHHHHHHHHHHHHcc-----CC---HHHHHHHHHHH
Confidence 467899999999999998653310 01123445777788886532 11 25789999999
Q ss_pred HHhhhhcc
Q psy742 271 ERNLRLLK 278 (713)
Q Consensus 271 e~~~~~~~ 278 (713)
++++..+.
T Consensus 160 ~~nl~~~~ 167 (817)
T 3sdr_A 160 KSNLELVK 167 (817)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHhh
Confidence 99997653
No 51
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=59.92 E-value=6.7 Score=46.22 Aligned_cols=64 Identities=25% Similarity=0.400 Sum_probs=44.5
Q ss_pred HHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHH
Q psy742 191 ITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWL 270 (713)
Q Consensus 191 I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yL 270 (713)
.-+.++||+++|.+||+|..... +. ..+.+.-|.=.++||..-. .. ...++|++.||
T Consensus 76 Fp~~~~wil~nQ~~DGsWg~~~~--~~-------------~~d~l~~TlAcvlAL~~w~-----~~---~~~i~~Gl~fl 132 (785)
T 3s9v_A 76 FPETVEWILQNQLKDGSWGEGFY--FL-------------AYDRILATLACIITLTLWR-----TG---ETQVQKGIEFF 132 (785)
T ss_dssp SHHHHHHHHHCCCTTSCCSCSSS--CC-------------HHHHHHHHHHHHHHHHHTT-----CC---HHHHHHHHHHH
T ss_pred chHHHHHHHHccCCCCCCCCCCC--Cc-------------hHHHHHHHHHHHHHHHHcc-----cC---HHHHHHHHHHH
Confidence 46789999999999999865321 00 1122555777788886532 11 25789999999
Q ss_pred HHhhhhc
Q psy742 271 ERNLRLL 277 (713)
Q Consensus 271 e~~~~~~ 277 (713)
++++..+
T Consensus 133 ~~nl~~~ 139 (785)
T 3s9v_A 133 RTQAGKM 139 (785)
T ss_dssp HHHHTTG
T ss_pred HHHHHHh
Confidence 9999765
No 52
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=58.86 E-value=6.7 Score=46.08 Aligned_cols=61 Identities=25% Similarity=0.401 Sum_probs=43.1
Q ss_pred HHHHHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHH
Q psy742 191 ITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWL 270 (713)
Q Consensus 191 I~~ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yL 270 (713)
.-+.++||+++|.+||+|...+.. ...+.+.-|.=.++||..-. .. ...++|++.||
T Consensus 55 Fp~~~~wil~nQ~~DGsWg~~~~~---------------~~~d~ll~TlAcvlAL~~w~-----~~---~~~i~~Gl~fl 111 (764)
T 3p5p_A 55 FPQALNWVFNNQLQDGSWGIESHF---------------SLCDRLLNTTNSVIALSVWK-----TG---HSQVQQGAEFI 111 (764)
T ss_dssp CHHHHHHHHHCCCTTSCCSCTTSC---------------CHHHHHHHHHHHHHHHHHTT-----CC---HHHHHHHHHHH
T ss_pred ChHHHHHHHHccCCCCCCCCCCCc---------------chHHHHHHHHHHHHHHHHcc-----CC---HHHHHHHHHHH
Confidence 467899999999999998653310 01223555777788886532 11 25789999999
Q ss_pred HHhh
Q psy742 271 ERNL 274 (713)
Q Consensus 271 e~~~ 274 (713)
++++
T Consensus 112 ~~nl 115 (764)
T 3p5p_A 112 AENL 115 (764)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9998
No 53
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=41.22 E-value=1.9e+02 Score=25.73 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=33.2
Q ss_pred ceeeEEeeCCcccccccccEEEEEEEEecceeeEEEEEEEEec-------CCCceEEEEEEEecC
Q psy742 53 IADSLTFPVNGISRNNVNATVVFLPIVPVHLGDIDVTVTASSL-------IGRDTVTRKLHIIAD 110 (713)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~V~F~I~p~~lG~i~I~V~A~s~-------~~sD~V~~~L~V~pe 110 (713)
..+.+.++... ++.|.|...|...|...|++.+-.. .....++..+.|.-|
T Consensus 64 ~t~~v~La~G~-------s~tv~f~~~~~~~G~~~v~AvVD~~n~I~E~nE~NN~~t~~~~~~~~ 121 (127)
T 3idu_A 64 KNWTVSLGPKE-------EKVLTFNWTPTQEGMYRINATVDEENTVVELNENNNVATFDVSVVLE 121 (127)
T ss_dssp EEEEEEECTTC-------EEEEEEEECCSSCEEEEEEEEESTTCCSCCSCSSSSEEEEEEEEC--
T ss_pred eeEEeccCCCC-------eEEEEEEEEcCCCcEEEEEEEEcCCCcEeeccCCCCEEEEEEEEEEe
Confidence 34455665555 7899999999899988888877533 223456666655443
No 54
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=39.77 E-value=27 Score=36.72 Aligned_cols=74 Identities=19% Similarity=0.127 Sum_probs=45.9
Q ss_pred HHHHHHhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHHHHHHHh
Q psy742 194 AVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERN 273 (713)
Q Consensus 194 ai~WL~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~~yLe~~ 273 (713)
..+.|+..|.++|+|...-.. ++...+ .++.+ ...-|.--||-|+.+|..+....+ ......++.||++||...
T Consensus 36 ~Ad~~l~~Q~~~GGW~kn~d~-~~~~~~--~~~~~-~~t~DnddTa~vl~~Larv~~~~~--~~~y~~Ai~Rgl~wlL~m 109 (332)
T 1gxm_A 36 RADVVLSYQQNNGGWPKNLDY-NSVGNG--GGGNE-SGTIDNGATITEMVFLAEVYKSGG--NTKYRDAVRKAANFLVNS 109 (332)
T ss_dssp GHHHHHHTCCTTSCCCSCCCT-TTCCCC--CCCCS-CEECGGGTTHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcCCCCCCcceec-cccccc--CCCCC-CCCccCccHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHHhc
Confidence 377889999999999885432 111111 01110 012234569999999988653221 123457899999999875
No 55
>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}
Probab=39.20 E-value=9.3 Score=29.11 Aligned_cols=11 Identities=55% Similarity=1.404 Sum_probs=9.5
Q ss_pred cCCCCCCCCCC
Q psy742 626 CGSSQCPYCPI 636 (713)
Q Consensus 626 C~~~~C~~c~~ 636 (713)
|..++||||-+
T Consensus 26 Cp~gqCPYC~~ 36 (57)
T 2k9h_A 26 CINGQCPYCMT 36 (57)
T ss_dssp HTTTBCTTTCC
T ss_pred CCCCCCCcccC
Confidence 77889999966
No 56
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=35.65 E-value=1.3e+02 Score=25.65 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=33.3
Q ss_pred ceeeEEeeCCcccccccc---cEEEEEEEEecceeeEEEEEEEEecCC--CceEEEEEEEecCCeEE
Q psy742 53 IADSLTFPVNGISRNNVN---ATVVFLPIVPVHLGDIDVTVTASSLIG--RDTVTRKLHIIADGLPQ 114 (713)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~---~~~V~F~I~p~~lG~i~I~V~A~s~~~--sD~V~~~L~V~peGv~~ 114 (713)
...++.|-.+| ..++ ...-.|...+. .|...|+++|+...+ ...-...|.|..+-.+.
T Consensus 31 ~V~kVef~vdg---~~vg~dt~apy~~~w~~~-~G~htl~a~AtD~~G~~~tS~~v~vtV~~~~~~~ 93 (98)
T 3pe9_A 31 KISRVDFLVDG---EVIGSDREAPYEYEWKAV-EGNHEISVIAYDDDDAASTPDSVKIFVKQARLEH 93 (98)
T ss_dssp CEEEEEEEETT---EEEEEECSSSEEEEEECC-SEEEEEEEEEEETTCCBCCCEEEEEEEECCC---
T ss_pred CEEEEEEEECC---EEecccccCCEEEEEEcC-CccEEEEEEEEECCCCEEeeeEEEEEECchhhcc
Confidence 34567777777 3332 33445666666 799999999996532 22333445555554443
No 57
>2wgn_B Inhibitor of cysteine peptidase compnd 3; hydrolase inhibitor, dynamics, peptidase inhibitor, cathepsi hydrolase inhibitor; NMR {Pseudomonas aeruginosa}
Probab=23.84 E-value=3.8e+02 Score=23.89 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=26.6
Q ss_pred CceEEEEEEeeeEEEEEEEEEEeeccccccCCCCCCCeeEEEEe
Q psy742 451 WGTVKVQASGAGYAILQMSVDYNVDIAKFQTQPPVPAFALNTRA 494 (713)
Q Consensus 451 ~g~v~v~a~G~G~a~~q~~~~Yn~~~~~~~~~~~~~~F~L~v~~ 494 (713)
+|.-....++..-+..++...|..++++ ...+...|.|.|.+
T Consensus 90 gG~~~w~f~A~~~G~~~i~~~Y~RpWE~--~~~~~~~F~l~V~V 131 (132)
T 2wgn_B 90 GGESTWRFRVAASGDDRLELVYRRPWEK--DAEPAESFSCAIQV 131 (132)
T ss_dssp SCCEEEEEEECSCEEEEEEEEEECTTSS--SCCCSSEEEEEEEE
T ss_pred CceEEEEEEEcCCceEEEEEEEECccCC--CCCcceEEEEEEEE
Confidence 4544444444445566777888888864 22345779988875
No 58
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=22.68 E-value=2.4e+02 Score=29.80 Aligned_cols=101 Identities=14% Similarity=0.147 Sum_probs=58.5
Q ss_pred HHHHHHHHHH-HhccCCCcceeeccccccccccccCCCCCCCcccCcceehHHHHHHHHhcccccCCCCCchhHHHHHHH
Q psy742 189 QVITQAVSWV-LDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAI 267 (713)
Q Consensus 189 ~~I~~ai~WL-~~~Q~~dG~F~e~g~v~h~~m~g~~~Gg~~~~~~~~v~LTAyVliaL~ea~~l~~g~~~~~~~~~~kA~ 267 (713)
+.+.+.+.|- ..-+.++|+|.+. +.. .|.+.. ..+..++++|-.+.++.++..+.+. ........+++
T Consensus 13 ~~~~~~l~fw~~~~~D~~GGf~~~---l~~--dg~~~~----~~~k~l~~n~r~i~~~a~a~~~~g~--~~~l~~A~~~~ 81 (402)
T 3gt5_A 13 THISDTMAFYHPRCIDSAGGFFHY---FRD--DGSIYN----ATHRHLVSSTRFVFNYAMAYLQFGT--AEYLDAVHHGL 81 (402)
T ss_dssp HHHHHHHHHHTTTTBCTTSSBCCE---ECT--TSCEEE----SSEEEHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcCeeeE---ECC--CCCCCC----CCchhHHHHHHHHHHHHHHHHhhCC--hHHHHHHHHHH
Confidence 4567777754 4445678998641 011 111000 0123477889999999888643221 12335668899
Q ss_pred HHHHHhhhhc---------------cCCCChHHHHHHHHHHHh---cCCcc
Q psy742 268 KWLERNLRLL---------------KDFGDPYEVAIVAYALRL---SKATI 300 (713)
Q Consensus 268 ~yLe~~~~~~---------------~~~~~~YtlAl~aYALaL---a~~~~ 300 (713)
+||.+++..- ...+..|..|.+++||+- +++++
T Consensus 82 ~fl~~~~~d~~~Gg~~~~~~dG~~~~~~~~lyd~Af~i~al~~~~~tgd~~ 132 (402)
T 3gt5_A 82 SYVRDVHRNPATGGYAWTLCDDRVEDDTNHCYGLAFVMLAYSCGLKVGIKQ 132 (402)
T ss_dssp HHHHHTTBCTTTSCBCSEEETTEEEECCEEHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhCccCCCCcEEEEeeCCCCCcCCcchHHHHHHHHHHHHHHHhCChh
Confidence 9999876211 112256888888888774 45554
No 59
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=20.56 E-value=3.5e+02 Score=23.57 Aligned_cols=23 Identities=17% Similarity=0.027 Sum_probs=16.7
Q ss_pred cEEEEEEEEec-ceeeEEEEEEEE
Q psy742 71 ATVVFLPIVPV-HLGDIDVTVTAS 93 (713)
Q Consensus 71 ~~~V~F~I~p~-~lG~i~I~V~A~ 93 (713)
++.|.|...|. ..|...|++.+-
T Consensus 62 s~tv~~~w~~~~~~G~ytl~a~VD 85 (114)
T 2l0d_A 62 STNVDFHWTLDGTANSYTLTVNVD 85 (114)
T ss_dssp EEEEEEEEECCCSCSEEEEEEEEC
T ss_pred EEEEEEEEeecCcCceEEEEEEEC
Confidence 56778877777 478777777664
No 60
>2bgo_A Endo-B1,4-mannanase 5C; carbohydrate binding protein, carbohydrate binding module; NMR {Cellvibrio japonicus} PDB: 2bgp_A
Probab=20.35 E-value=4.9e+02 Score=23.64 Aligned_cols=55 Identities=20% Similarity=0.157 Sum_probs=33.5
Q ss_pred eeeEEeeCCcccccccccEEEEEEEEecceeeEEEEEEEEecCCCceEEEEEEE-ecCCeEEE
Q psy742 54 ADSLTFPVNGISRNNVNATVVFLPIVPVHLGDIDVTVTASSLIGRDTVTRKLHI-IADGLPQH 115 (713)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~V~F~I~p~~lG~i~I~V~A~s~~~sD~V~~~L~V-~peGv~~~ 115 (713)
.++|+||+... .+ +.. .++.+.-|..+|++...++.-.+.....|.| .+.|.+.+
T Consensus 73 ~~~V~fP~tt~---~~-~~~---~~V~L~aG~NtI~i~~~~g~WG~~~iD~I~l~~a~~~~~~ 128 (140)
T 2bgo_A 73 ALSYAFAEATV---PV-TYV---QTKTLSAGNHSFGVRVGSSDWGYMNVHSLKLELLGGLTIR 128 (140)
T ss_dssp EEEEEEESCCS---CE-EEE---EEEEECSSCEEEEEECCSSSCCCCEEEEEEEEECC-----
T ss_pred eeEEEECCcCC---cE-EEE---EEEEecCCccEEEEEecCCCceeEEEEEEEEEcCCCcccc
Confidence 77899997662 12 112 2377999999999998655555655555555 45666655
Done!