RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy742
(713 letters)
>gnl|CDD|219510 pfam07678, A2M_comp, A-macroglobulin complement component. This
family includes the complement components region of the
alpha-2-macroglobulin family.
Length = 248
Score = 207 bits (529), Expect = 5e-62
Identities = 81/221 (36%), Positives = 116/221 (52%), Gaps = 22/221 (9%)
Query: 186 LPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITL 245
+ Q I Q+++W+L Q PDGSF E + R++ + +++LTA VLI L
Sbjct: 46 IDEQHICQSLNWLLSQQKPDGSFREPGPVFHREMKGGVE--------DDVTLTAFVLIAL 97
Query: 246 DTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLS-KATIAEAA 304
D+ +RV A KA+++LE + + PY +AI AYAL L+ K+ A
Sbjct: 98 LEALDILPDELSRVDPAIDKALEYLESAV---EGLNRPYTLAITAYALTLAGKSPQASEL 154
Query: 305 FGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYV 364
L A+ EG YW ++ K P Y A +ETTAYALL Y+
Sbjct: 155 LEKLKALAQEEGNSRYWERDEKSKDSGK---------PLYWYSAPAAEVETTAYALLAYL 205
Query: 365 SRQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEY 404
S +L DPIV+WL SQR + GG++STQDT +A++AL EY
Sbjct: 206 SLGDLTYADPIVRWLTSQRNSGGGFSSTQDTVVALQALSEY 246
>gnl|CDD|239226 cd02896, complement_C3_C4_C5, Proteins similar to C3, C4 and C5 of
vertebrate complement. The vertebrate complement
system, comprised of a large number of distinct plasma
proteins, is an effector of both the acquired and innate
immune systems. The point of convergence of the
classical, alternative and lectin pathways of the
complement system is the proteolytic activation of C3.
C4 plays a key role in propagating the classical and
lectin pathways. C5 participates in the classical and
alternative pathways. The thioester bond located within
the structure of C3 and C4 is central to the function of
complement. C5 does not contain an active thioester
bond.
Length = 297
Score = 133 bits (336), Expect = 1e-34
Identities = 74/219 (33%), Positives = 108/219 (49%), Gaps = 23/219 (10%)
Query: 187 PLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLD 246
VI +V+W++ +Q PDGSF E + ++ R++ + DV SLTA VLI L
Sbjct: 101 DQNVICGSVNWLISNQKPDGSFQEPSPVIHREMTGGVEGSEGDV-----SLTAFVLIALQ 155
Query: 247 TVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFG 306
+ + + + KAI +LE L + PY +AI AYAL L+ + ++ AA
Sbjct: 156 EARSICPPEVQNLDQSIRKAISYLENQLP---NLQRPYALAITAYALALADSPLSHAANR 212
Query: 307 ILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSR 366
L A+ +G YW P P AI +ETTAYALL +
Sbjct: 213 KLLSLAKRDGNGWYWWTIDSPYWPVP--------------GPSAITVETTAYALLALLKL 258
Query: 367 QEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEY 404
++ +PI +WL QR GG+ STQDT +A++AL EY
Sbjct: 259 GDIEYANPIARWLTEQRNYGGGFGSTQDTVVALQALAEY 297
>gnl|CDD|239227 cd02897, A2M_2, Proteins similar to alpha2-macroglobulin (alpha
(2)-M). This group also contains the pregnancy zone
protein (PZP). Alpha(2)-M and PZP are broadly specific
proteinase inhibitors. Alpha (2)-M is a major carrier
protein in serum. The structural thioester of alpha
(2)-M, is involved in the immobilization and entrapment
of proteases. PZP is a trace protein in the plasma of
non-pregnant females and males which is elevated in
pregnancy. Alpha (2)-M and PZ bind to placental
protein-14 and may modulate its activity in T-cell
growth and cytokine production contributing to fetal
survival. It has been suggested that thioester bond
cleavage promotes the binding of PZ and alpha (2)-M to
the CD91 receptor clearing them from circulation.
Length = 292
Score = 129 bits (326), Expect = 3e-33
Identities = 74/222 (33%), Positives = 108/222 (48%), Gaps = 37/222 (16%)
Query: 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTV 248
V+ QA++W+ HQ +G F E V R + ++ DD ++LTA+VLI L
Sbjct: 102 NVLQQALTWLSSHQKSNGCFRE----VGRVFHKAMQGGVDD----EVALTAYVLIAL--- 150
Query: 249 KDLTGGLGARVSLAQS---KAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAF 305
L A + + KA+ LE L DPY +A+ AYAL L+ + A
Sbjct: 151 ------LEAGLPSERPVVEKALSCLEAAL---DSISDPYTLALAAYALTLAGSEKRPEAL 201
Query: 306 GILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVS 365
L + A SE G +W + P P ++ + +E TAYALL +S
Sbjct: 202 KKLDELAISEDGTKHWSRPPPSEE-----------GPSYYWQAPSAEVEMTAYALLALLS 250
Query: 366 R-QELLTD--PIVKWLNSQRLTDGGWASTQDTAMAMKALIEY 404
E L + PIVKWL QR + GG++STQDT +A++AL +Y
Sbjct: 251 AGGEDLAEALPIVKWLAKQRNSLGGFSSTQDTVVALQALAKY 292
>gnl|CDD|239221 cd02891, A2M_like, Proteins similar to alpha2-macroglobulin (alpha
(2)-M). Alpha (2)-M is a major carrier protein in
serum. It is a broadly specific proteinase inhibitor.
The structural thioester of alpha (2)-M, is involved in
the immobilization and entrapment of proteases. This
group contains another broadly specific proteinase
inhibitor: pregnancy zone protein (PZP). PZP is a
trace protein in the plasma of non-pregnant females and
males which is elevated in pregnancy. Alpha (2)-M and PZ
bind to placental protein-14 and may modulate its
activity in T-cell growth and cytokine production
thereby protecting the allogeneic fetus from attack by
the maternal immune system. This group also contains C3,
C4 and C5 of vertebrate complement. The vertebrate
complement is an effector of both the acquired and
innate immune systems The point of convergence of the
classical, alternative and lectin pathways of the
complement system is the proteolytic activation of C3.
C4 plays a key role in propagating the classical and
lectin pathways. C5 participates in the classical and
alternative pathways. The thioester bond located within
the structure of C3 and C4 is central to the function of
complement. C5 does not contain an active thioester
bond.
Length = 282
Score = 122 bits (309), Expect = 5e-31
Identities = 72/220 (32%), Positives = 104/220 (47%), Gaps = 38/220 (17%)
Query: 187 PLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLD 246
V+ +A+ W++ Q DGSF E ++ R++ +D V SLTA+VLI L
Sbjct: 99 DENVLARALGWLVPQQKEDGSFRELGPVIHREMKGG---VDDSV-----SLTAYVLIALA 150
Query: 247 TVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLS-KATIAEAAF 305
G + KA+ +LE L DPY +AI+AYAL L+ +T A+ A
Sbjct: 151 -------EAGKACDASIEKALAYLETQL---DGLLDPYALAILAYALALAGDSTRADEAL 200
Query: 306 GILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVS 365
L + AR +GG +W L ++ +E TAYALL +
Sbjct: 201 KKLLEAAREKGGTAHWS------------------LSWPGDYGSSLRVEATAYALLALLK 242
Query: 366 RQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEY 404
+L PI KWL QR + GG+ STQDT +A++AL Y
Sbjct: 243 LGDLEEAGPIAKWLAQQRNSGGGFLSTQDTVVALQALAAY 282
>gnl|CDD|203720 pfam07677, A2M_recep, A-macroglobulin receptor. This family
includes the receptor domain region of the
alpha-2-macroglobulin family.
Length = 90
Score = 98.4 bits (246), Expect = 9e-25
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 521 SGMAVLDVAIPTGYIIQQQKLDAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTETCINFT 580
S MA++D+ + +G+ ++ L + R + KV+ Y D + E C +F
Sbjct: 1 SNMAIVDIKLLSGFTPDKEDLKQL-SNGVDRYISRYEVDDGKVILYLDEISSEEVCFSFR 59
Query: 581 IERWFPVANMSRYLPIRVYDYYAPERFNETIF 612
E+ FPV N+ + ++VYDYY P+ +
Sbjct: 60 AEQTFPVGNL-QPASVKVYDYYEPDERCTKFY 90
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene
cyclases, protein prenyltransferases beta subunit, two
broadly specific proteinase inhibitors
alpha2-macroglobulin (alpha (2)-M) and pregnancy zone
protein (PZP) and, the C3 C4 and C5 components of
vertebrate complement. Class II terpene cyclases include
squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase
(OSQCY), these integral membrane proteins catalyze a
cationic cyclization cascade converting linear
triterpenes to fused ring compounds. The protein
prenyltransferases include protein farnesyltransferase
(FTase) and geranylgeranyltransferase types I and II
(GGTase-I and GGTase-II) which catalyze the
carboxyl-terminal lipidation of Ras, Rab, and several
other cellular signal transduction proteins,
facilitating membrane associations and specific
protein-protein interactions. Alpha (2)-M is a major
carrier protein in serum and involved in the
immobilization and entrapment of proteases. PZP is a
pregnancy associated protein. Alpha (2)-M and PZP are
known to bind to and, may modulate, the activity of
placental protein-14 in T-cell growth and cytokine
production thereby protecting the allogeneic fetus from
attack by the maternal immune system.
Length = 300
Score = 93.4 bits (232), Expect = 7e-21
Identities = 58/236 (24%), Positives = 81/236 (34%), Gaps = 53/236 (22%)
Query: 186 LPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITL 245
+ + +A++W+L Q DG F E + +D + LTA+ LI L
Sbjct: 101 VDRIDLARALNWLLSLQNEDGGFRE----DGPGNHRIGGDESD------VRLTAYALIAL 150
Query: 246 DTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFG-----DPYEVAIVAYALRLSKATI 300
+ L KA+ +L FG Y A A AL L
Sbjct: 151 ALLGKLD------PDPLIEKALDYLLSCQNYDGGFGPGGESHGYGTACAAAALALLGDLD 204
Query: 301 AEAAFGI---LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKY-DAINIETT 356
+ A L R +GG K D+ E
Sbjct: 205 SPDAKKALRWLLSRQRPDGGWGEG--------------------RDRTNKLSDSCYTEWA 244
Query: 357 AYALLVYVSRQEL-LTDPIVKWLNSQRLTDGGWAS-------TQDTAMAMKALIEY 404
AYALL +L + +VKWL SQ+ DGG++S TQ T A+ AL Y
Sbjct: 245 AYALLALGKLGDLEDAEKLVKWLLSQQNEDGGFSSKPGKSYDTQHTVFALLALSLY 300
>gnl|CDD|219528 pfam07703, A2M_N_2, Alpha-2-macroglobulin family N-terminal
region. This family includes a region of the
alpha-2-macroglobulin family.
Length = 136
Score = 44.8 bits (107), Expect = 1e-05
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 1 MNREKKKMMRIILLAGQENMQSTIRSFAVSLSAEMAPSATIVVYNVGRNGDVIADSLTFP 60
+R K IL +G +++ + + ++A+MAP+A + Y + G+ +A S+
Sbjct: 34 ESRGK------ILSSGVVDVKGGSTTIELPVTADMAPNAYVSAYYIRPGGERVAGSVWLD 87
Query: 61 VNGISRNN 68
V R
Sbjct: 88 VEDCDRKL 95
>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II
terpene cyclases that have an alpha 6 - alpha 6 barrel
fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene
cyclase (OSQCY) are integral membrane proteins that
catalyze a cationic cyclization cascade converting
linear triterpenes to fused ring compounds. Bacterial
SQCY catalyzes the convertion of squalene to hopene or
diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide
of squalene to compounds such as, lanosterol (a
metabolic precursor of cholesterol and steroid hormones)
in mammals and fungi or, cycloartenol in plants.
Deletion of a single glycine residue of Alicyclobacillus
acidocaldarius SQCY alters its substrate specificity
into that of eukaryotic OSQCY. Both enzymes have a
second minor domain, which forms an alpha-alpha barrel
that is inserted into the major domain. This group also
contains SQCY-like archael sequences and some bacterial
SQCY's which lack this minor domain.
Length = 348
Score = 36.8 bits (86), Expect = 0.030
Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 14/93 (15%)
Query: 191 ITQAVSWVLDHQTPDGSFYETTWLVDRKVNSS-LNWPNDDVKFRNI-------SLTAHVL 242
+ AV W+L Q +G F + D L + +I T VL
Sbjct: 119 LYDAVDWLLSMQNSNGGF--AAFEPDN--TYKYLELIPE--VDGDIMIDPPYVECTGSVL 172
Query: 243 ITLDTVKDLTGGLGARVSLAQSKAIKWLERNLR 275
L L + A +A+K+LER
Sbjct: 173 EALGLFGKLYPEHRREIDPAIRRAVKYLEREQE 205
Score = 32.2 bits (74), Expect = 0.89
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 189 QVITQAVSWVLDHQTPDGSFY 209
I +AV ++ Q PDGS+Y
Sbjct: 191 PAIRRAVKYLEREQEPDGSWY 211
Score = 30.3 bits (69), Expect = 3.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 191 ITQAVSWVLDHQTPDGSFYET 211
+ +A W+L Q PDG + E+
Sbjct: 241 VRKACDWLLSKQNPDGGWGES 261
>gnl|CDD|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found
in class II terpene cyclases that have an alpha 6 -
alpha 6 barrel fold. Squalene cyclase (SQCY) and
2,3-oxidosqualene cyclase (OSQCY) are integral membrane
proteins that catalyze a cationic cyclization cascade
converting linear triterpenes to fused ring compounds.
This group contains bacterial SQCY which catalyzes the
convertion of squalene to hopene or diplopterol and
eukaryotic OSQCY which transforms the 2,3-epoxide of
squalene to compounds such as, lanosterol in mammals and
fungi or, cycloartenol in plants. Deletion of a single
glycine residue of Alicyclobacillus acidocaldarius SQCY
alters its substrate specificity into that of eukaryotic
OSQCY. Both enzymes have a second minor domain, which
forms an alpha-alpha barrel that is inserted into the
major domain.
Length = 634
Score = 36.0 bits (84), Expect = 0.066
Identities = 52/238 (21%), Positives = 80/238 (33%), Gaps = 77/238 (32%)
Query: 191 ITQAVSWVLDHQTPDGSF--YETTWLVDRKVNSSLNWPNDDVKFRNISL-------TAHV 241
+ AV W+L Q +G F +E +LN P +D F +I + T V
Sbjct: 402 LYDAVDWLLGMQNSNGGFAAFEPD--NTYHWLENLN-PFED--FGDIMIDPPYVECTGSV 456
Query: 242 LITLDTVKDLTGGLGARVSLAQSKAIKWLERN----------------------LRLLKD 279
L L L G + A +A+K+L R L L
Sbjct: 457 LEALGLFGKLYPGHRREIDPAIRRAVKYLLREQEPDGSWYGRWGVCYIYGTWFALEALAA 516
Query: 280 FGDPYEVAIVAYALRLSKATIAEAA-FGILTQHARSEGG-----LTYWGKEPVPAPPSKI 333
G+ YE + I +A F L +GG L+Y K S
Sbjct: 517 AGEDYE----------NSPYIRKACDF--LLSKQNPDGGWGESYLSYEDKSYAGGGRS-- 562
Query: 334 ENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQELLTDPI---VKWLNSQRLTDGGW 388
+ TA+ALL ++ E ++ + +K+L + +L DG W
Sbjct: 563 ------------------TVVQTAWALLALMAAGEPDSEAVERGIKYLLNTQLPDGDW 602
Score = 32.6 bits (75), Expect = 0.89
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 189 QVITQAVSWVLDHQTPDGSFY 209
I +AV ++L Q PDGS+Y
Sbjct: 476 PAIRRAVKYLLREQEPDGSWY 496
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like.
Length = 112
Score = 33.1 bits (76), Expect = 0.11
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 352 NIETTAYALLVYVSRQELLT-DPIVKWLNSQRLTDGGWASTQD--------TAMAMKAL 401
++ TA ALL + E + WL SQ+ DGG+ TA A+ AL
Sbjct: 23 DVAMTALALLALAALGETPDVKKALAWLLSQQNPDGGFGYDPQSNSPDLSSTAYALAAL 81
Score = 32.7 bits (75), Expect = 0.16
Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 32/120 (26%)
Query: 279 DFGDPYEVAIVAYALRLSKA----TIAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIE 334
G +VA+ A AL A + A L +GG Y + P
Sbjct: 17 AVGGGSDVAMTALALLALAALGETPDVKKALAWLLSQQNPDGGFGYDPQSNSP------- 69
Query: 335 NQKPFLLPRLPYKYDAINIETTAYAL-LVYVSRQELLTDPI---VKWLNSQRLTDGGWAS 390
++ +TAYAL + + E + + V +L S + DGG+
Sbjct: 70 -----------------DLSSTAYALAALELLGGEPDDEAVEKAVDYLLSCQNPDGGFGY 112
Score = 32.3 bits (74), Expect = 0.22
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
Query: 375 VKWLNSQRLTDGGWAS-------TQDTAMAMKALIEY 404
V +L SQ+ DGGW + TA+A+ AL
Sbjct: 1 VDYLLSQQNPDGGWGAAVGGGSDVAMTALALLALAAL 37
Score = 28.5 bits (64), Expect = 4.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 191 ITQAVSWVLDHQTPDGSF 208
+ +AV ++L Q PDG F
Sbjct: 93 VEKAVDYLLSCQNPDGGF 110
Score = 27.7 bits (62), Expect = 9.8
Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 31/110 (28%)
Query: 195 VSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGG 254
V ++L Q PDG + +++ +D +++TA L+ L
Sbjct: 1 VDYLLSQQNPDGGW-----------GAAVGGGSD------VAMTALALLAL--------- 34
Query: 255 LGARVSLAQSKAIKWLERNLRLLKDF-----GDPYEVAIVAYALRLSKAT 299
+ KA+ WL F + +++ AYAL +
Sbjct: 35 AALGETPDVKKALAWLLSQQNPDGGFGYDPQSNSPDLSSTAYALAALELL 84
>gnl|CDD|111368 pfam02462, Opacity, Opacity family porin protein. Pathogenic
Neisseria spp. possess a repertoire of phase-variable
Opacity proteins that mediate various pathogen--host
cell interactions. These proteins are integral membrane
proteins related to other porins.
Length = 126
Score = 31.3 bits (71), Expect = 0.66
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 224 NWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSK 265
+ F+ SL A V+ DT + +GARVS K
Sbjct: 19 KVKANSTDFKGYSLGASVIYDFDTQSPVKPYVGARVSTNGFK 60
>gnl|CDD|215548 PLN03042, PLN03042, Lactoylglutathione lyase; Provisional.
Length = 185
Score = 31.3 bits (71), Expect = 0.96
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 533 GYIIQQ---------QKLDAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTETCINFTIER 583
GYI+QQ LD Y R + L+R F E K YF +D+ET ER
Sbjct: 25 GYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPER 84
Query: 584 W 584
Sbjct: 85 T 85
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase
repeat.
Length = 44
Score = 28.3 bits (64), Expect = 1.1
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 193 QAVSWVLDHQTPDGSFYETTW 213
+ V ++L Q PDG F
Sbjct: 5 KLVDYLLSCQNPDGGFGGRPG 25
>gnl|CDD|177995 PLN02367, PLN02367, lactoylglutathione lyase.
Length = 233
Score = 31.1 bits (70), Expect = 1.5
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 533 GYIIQQ---------QKLDAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTETCINFTIER 583
GYI+QQ LD Y R + L+R F E K YF +DT + ER
Sbjct: 73 GYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTER 132
>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases. This
family of enzymes catalyzes the cyclization of the
triterpenes squalene or 2-3-oxidosqualene to a variety
of products including hopene , lanosterol ,
cycloartenol, amyrin, lupeol and isomultiflorenol.
Length = 621
Score = 31.6 bits (72), Expect = 1.6
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 146 YDVDRYYVYGSSINSSSISTLKML------LWYSCLLCLYIWETLMLPL-QVITQAVSWV 198
YD D + +N S + M+ + + L + + V+ +A+ ++
Sbjct: 410 YDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYL 469
Query: 199 LDHQTPDGSFY 209
Q DGS++
Sbjct: 470 RREQRADGSWF 480
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like.
Length = 109
Score = 29.6 bits (67), Expect = 2.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 187 PLQVITQAVSWVLDHQTPDGSF 208
L+ I +AV W+LD Q DG F
Sbjct: 44 VLEAIKKAVEWLLDQQQEDGGF 65
Score = 29.2 bits (66), Expect = 2.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 191 ITQAVSWVLDHQTPDGSFY 209
+ +AV ++L+ Q PDGS+
Sbjct: 1 LERAVEYILNTQNPDGSWS 19
>gnl|CDD|216208 pfam00941, FAD_binding_5, FAD binding domain in molybdopterin
dehydrogenase.
Length = 171
Score = 29.4 bits (67), Expect = 4.4
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 10/64 (15%)
Query: 230 VKFRNISLTAHVLIT----LDTVKDLTGGL--GARVSLAQSKAIKWLERNLRLLKD---- 279
+K R + I L +++ GL GA V+L + L +
Sbjct: 37 MKLRLARPPVLIDINGIPELRGIEETGDGLEIGAAVTLTDLIDSPLVAEVFPALAEALRK 96
Query: 280 FGDP 283
P
Sbjct: 97 IASP 100
>gnl|CDD|221345 pfam11965, DUF3479, Domain of unknown function (DUF3479). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 160 amino acids in length. This
domain is found associated with pfam02514.
Length = 164
Score = 28.7 bits (65), Expect = 6.1
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 9 MRIILLAGQENMQSTIRSFAVSLSAEMAPSATIVVYNVG 47
MR++++ + + A L+ E P + V+
Sbjct: 1 MRVVIVTLDAHYNGALARAAERLNRERFPGLELSVFAAA 39
>gnl|CDD|131404 TIGR02351, thiH, thiazole biosynthesis protein ThiH. Members this
protein family are the ThiH protein of thiamine
biosynthesis, a homolog of the BioB protein of biotin
biosynthesis. Genes for the this protein generally are
found in operons with other thiamin biosynthesis genes
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Thiamine].
Length = 366
Score = 29.6 bits (67), Expect = 6.8
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 605 ERFNETIFDALPTYLLNICEVCGSSQCPYC 634
+RF TI P YL N C S++C YC
Sbjct: 65 KRFGNTISLFTPLYLSNYC----SNKCVYC 90
>gnl|CDD|190082 pfam01731, Arylesterase, Arylesterase. This family consists of
arylesterases (Also known as serum paraoxonase)
EC:3.1.1.2. These enzymes hydrolyse organophosphorus
esters such as paraoxon and are found in the liver and
blood. They confer resistance to organophosphate
toxicity. Human arylesterase (PON1) is associated with
HDL and may protect against LDL oxidation.
Length = 86
Score = 27.4 bits (61), Expect = 8.0
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 19 NMQSTIRSFAVSLSAEMAPSATIVVYNVGRNGDVIADSLTFPVNGI 64
N F +L + T VVY V+A +F NGI
Sbjct: 15 NDHYFGDPFLQNLEMYLGLIWTGVVYYSPSEVKVVASGFSFA-NGI 59
>gnl|CDD|225248 COG2373, COG2373, Large extracellular alpha-helical protein [General
function prediction only].
Length = 1621
Score = 29.7 bits (67), Expect = 8.1
Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 22/133 (16%)
Query: 215 VDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKDLT-GGLGARVSLAQSKAIKWLERN 273
++R +N P + + + L I+ D + L+ + A++ L+ + A +
Sbjct: 1101 LERHLNVRPAVP-PQTQVKTVVLAPGFTISGDLLAGLSPQAVNAQLQLSGTPAAD-IAAL 1158
Query: 274 LRLLKDFGDPYEVAI----VAYA-LRLSKATI------------AEAAFGILTQHARSEG 316
L +L D+ PY A L KAT + A G L S G
Sbjct: 1159 LDVLDDY--PYGCAEQTASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGSNG 1216
Query: 317 GLTYWGKEPVPAP 329
WG P
Sbjct: 1217 AFGLWGGNGSGDP 1229
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.411
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,486,936
Number of extensions: 3579629
Number of successful extensions: 3000
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2966
Number of HSP's successfully gapped: 41
Length of query: 713
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 609
Effective length of database: 6,324,786
Effective search space: 3851794674
Effective search space used: 3851794674
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.1 bits)