RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy742
(713 letters)
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide,
immune system; HET: NAG; 2.70A {Anopheles gambiae}
Length = 1325
Score = 255 bits (651), Expect = 2e-72
Identities = 95/456 (20%), Positives = 183/456 (40%), Gaps = 56/456 (12%)
Query: 185 MLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLIT 244
+ ++ +A+ W+ Q G F + +++ L ++LT++VL+
Sbjct: 920 DIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRN--------GVALTSYVLMA 971
Query: 245 LDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAA 304
L A+ + K + +L + + Y+++I YA+ L+ T+ E A
Sbjct: 972 LL----ENDIAKAKHAEVIQKGMTYLSNQFGSINN---AYDLSIATYAMMLNGHTMKEEA 1024
Query: 305 FGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYV 364
L + + + IETTAYALL +V
Sbjct: 1025 LNKLIDMSFIDADKNER------------------------FWNTTNPIETTAYALLSFV 1060
Query: 365 SRQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVSIEAT 423
++ P++ WL +QR G + STQDT + +KAL + + TV ++
Sbjct: 1061 MAEKYTDGIPVMNWLVNQRYVTGSFPSTQDTFVGLKALTKMAEKISPSRND-YTVQLKY- 1118
Query: 424 ALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQP 483
KY + + + ++IP+ +++ G G+ +L++ +N+++ F+
Sbjct: 1119 --KKSAKYFKINSEQIDVENFVDIPEDTKKLEINVGGIGFGLLEVVYQFNLNLVNFE--- 1173
Query: 484 PVPAFALNTRANFHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDA 543
F L+ G + + C +I Q RS MA+++V +P+GY++ + +
Sbjct: 1174 --NRFQLDLEKQNTGSDY-ELRLKVCASYIPQLTDRRSNMALIEVTLPSGYVVDRNPISE 1230
Query: 544 YIRTRNVPNLQRARFQEQKVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIRVYDYYA 603
+ + R+ V+ Y+D + C T R F VA R + VYDYY
Sbjct: 1231 QTKVNPI-QKTEIRYGGTSVVLYYDNMGSERNCFTLTAYRRFKVALK-RPAYVVVYDYYN 1288
Query: 604 PERFNETIFDALPTYLLNICEVCGSSQCP-YCPIYN 638
+++ N+CE+C CP C ++
Sbjct: 1289 TNLNAIKVYEVDKQ---NLCEICDEEDCPAECGGHH 1321
Score = 40.8 bits (94), Expect = 0.002
Identities = 24/214 (11%), Positives = 57/214 (26%), Gaps = 21/214 (9%)
Query: 10 RIILLAGQENMQSTIRSFAVSLSAEMAPSATIVVYNVGRNGDVIADSLTFPVNGISRNNV 69
II + ++ + +M P A I++ V V+ D + RNN
Sbjct: 440 NIIDAGFMRPNKQPKYLLQLNATEKMIPRAKILIATV-AGRTVVYDFADLAFQEL-RNNF 497
Query: 70 NATVVFLPIVPVHLGDIDVTVTASSLIGRDTVTRKLHIIADGLPQHRHQSILLDLSNRAY 129
+ ++ I P ++ ++ + +G + L +
Sbjct: 498 DLSIDEQEIKPGRQIELSMSGRPGAYVGLAAYDKALLLFNKNHDL-----------FWED 546
Query: 130 VFQYLHVNVTETPIIPYDVDRYYVYGSSINSSSISTLKMLLWYSCLLCLYIWETLMLPLQ 189
+ Q ++ +++ + + L L+
Sbjct: 547 IGQVFDGFHAINENEFDIFHSLGLFARTLDDILFDSANEKTGRNALQSGKPIGKLVSYRT 606
Query: 190 VITQAVSWVLDHQTPDGSF--------YETTWLV 215
++ W GS T+W +
Sbjct: 607 NFQESWLWKNVSIGRSGSRKLIEVVPDTTTSWYL 640
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor,
irreversible PROT inhibitor, conformational change, blood
plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Length = 1451
Score = 245 bits (624), Expect = 8e-69
Identities = 100/434 (23%), Positives = 177/434 (40%), Gaps = 37/434 (8%)
Query: 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTV 248
ITQA+ W+ Q +G F + L LN ++L+A++ I L +
Sbjct: 1038 AHITQALIWLSQRQKDNGCFRSSGSL--------LNNAIKGGVEDEVTLSAYITIALLEI 1089
Query: 249 KDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLS-KATIAEAAFGI 307
R +L ++ + + Y A++AYA L+ +
Sbjct: 1090 PLTVTHPVVRNALF---CLESAWKTAQEGDHGSHVYTKALLAYAFALAGNQDKRKEVLKS 1146
Query: 308 LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ 367
L + A + +W + P P + + +E T+Y LL Y++ Q
Sbjct: 1147 LNEEAVKKDNSVHWERPQKPKAPVG---------HFYEPQAPSAEVEMTSYVLLAYLTAQ 1197
Query: 368 ELLTD-------PIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVSI 420
T IVKW+ Q+ GG++STQDT +A+ AL +Y R V+I
Sbjct: 1198 PAPTSEDLTSATNIVKWITKQQNAQGGFSSTQDTVVALHALSKYGAATFTRTGKAAQVTI 1257
Query: 421 EATALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQ 480
+++ V NNN LQ++ +P+ G ++ +G G LQ S+ YN+ K +
Sbjct: 1258 QSS--GTFSSKFQVDNNNRLLLQQVSLPELPGEYSMKVTGEGCVYLQTSLKYNILPEKEE 1315
Query: 481 TQPPVPAFALNTRANFHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQK 540
A + T ++H ++ Y + S MA++DV + +G+I +
Sbjct: 1316 FP---FALGVQTLPQTCDEPKAHTSFQISLSVSYTGSRSASNMAIVDVKMVSGFIPLKPT 1372
Query: 541 LDAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIRVYD 600
+ R+ +V R VL Y D + + + FT+ + PV ++ ++VYD
Sbjct: 1373 VKMLERSNHV---SRTEVSSNHVLIYLDKVSNQTLSLFFTVLQDVPVRDLKPA-IVKVYD 1428
Query: 601 YYAPERFNETIFDA 614
YY + F ++A
Sbjct: 1429 YYETDEFAIAEYNA 1442
Score = 53.6 bits (127), Expect = 2e-07
Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 12 ILLAGQENMQSTIR------SFAVSLSAEMAPSATIVVYNVGRNGDVIADSLTFPVNGIS 65
I+ G + S ++ + +++AP A +++Y V GDVI DS + V
Sbjct: 482 IVRTGTHGLLVKQEDMKGHFSISIPVKSDIAPVARLLIYAVLPTGDVIGDSAKYDVENCL 541
Query: 66 RNNVNATVVFLPIVPVHLGDIDVTVTASSLIGRDTVTRKLHIIADG 111
N V+ + +P + VT S+ V + + ++
Sbjct: 542 ANKVDLSFSPSQSLPASHAHLRVTAAPQSVCALRAVDQSVLLMKPD 587
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of
basic residues, complement alternate pathway,
glycoprotein, immune response; HET: NAG; 3.10A {Homo
sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A*
4a5w_A* 1xwe_A
Length = 1676
Score = 235 bits (600), Expect = 1e-65
Identities = 93/464 (20%), Positives = 185/464 (39%), Gaps = 44/464 (9%)
Query: 189 QVITQAVSWVL-DHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247
I ++ W++ ++Q +GSF E + K+ +L + ++ LTA +I +
Sbjct: 1098 NSICNSLLWLVENYQLDNGSFKENSQYQPIKLQGTLPVEARE---NSLYLTAFTVIGIRK 1154
Query: 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKAT--IAEAAF 305
D+ + ++ A KA +L N + + +AI AYAL L T +
Sbjct: 1155 AFDICPLV--KIDTALIKADNFLLENTLPAQS---TFTLAISAYALSLGDKTHPQFRSIV 1209
Query: 306 GILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVS 365
L + A +G + +P A +ETTAYALL ++
Sbjct: 1210 SALKREALVKGNPPIYRFWKDNLQHK---------DSSVPNTGTARMVETTAYALLTSLN 1260
Query: 366 RQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVSIEATA 424
+++ +P++KWL+ ++ GG+ STQDT A++ L EY+ + L++ I+ +
Sbjct: 1261 LKDINYVNPVIKWLSEEQRYGGGFYSTQDTINAIEGLTEYSLLVKQLR---LSMDIDVSY 1317
Query: 425 LPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQPP 484
+ + + + +E+ + G+G A + ++ + K T
Sbjct: 1318 KHKGALHNYKMTDKNFLGRPVEVLLNDDLIVSTGFGSGLATVHVTTVVH----KTSTSEE 1373
Query: 485 VPAFALN-------TRANFHGRNQSHITYHSCQRWIYQNESAR--SGMAVLDVAIPTGYI 535
V +F L N + +C + E + S AV+D+++PTG
Sbjct: 1374 VCSFYLKIDTQDIEASHYRGYGNSDYKRIVACASYKPSREESSSGSSHAVMDISLPTGIS 1433
Query: 536 IQQQKLDAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTE-TCINFTIERWFPVANMSRYL 594
++ L A + + + ++ V+ + + ++ C+ F I F V +S
Sbjct: 1434 ANEEDLKALVEGVD-QLFTDYQIKDGHVILQLNSIPSSDFLCVRFRIFELFEVGFLSP-A 1491
Query: 595 PIRVYDYYAPERFNETIFDALPTYLLNICE----VCGSSQCPYC 634
VY+Y+ P++ + + +CE C + C
Sbjct: 1492 TFTVYEYHRPDKQCTMFYSTSNIKIQKVCEGAACKCVEADCGQM 1535
Score = 59.4 bits (142), Expect = 4e-09
Identities = 17/131 (12%), Positives = 50/131 (38%), Gaps = 9/131 (6%)
Query: 71 ATVVFLPIVPVHLGDIDVTVTASSLIGRDTVTRKLHIIADGLPQHRHQSILLDLSNRAYV 130
+ +V ++P+ +G ++ + + G++ + + L ++ +G+ + + + LD
Sbjct: 893 SHLVTFTVLPLEIGLHNINFSLETWFGKEILVKTLRVVPEGVKRESYSGVTLDPRG---- 948
Query: 131 FQYLHVNVTETPIIPYDVDRYYVYGSSINSSSISTLKML--LWYSCLLCLYIWETLMLPL 188
++ ++ PY + V + I ++ + + L I LP
Sbjct: 949 ---IYGTISRRKEFPYRIPLDLVPKTEIKRILSVKGLLVGEILSAVLSQEGINILTHLPK 1005
Query: 189 QVITQAVSWVL 199
+ V+
Sbjct: 1006 GSAEAELMSVV 1016
Score = 36.3 bits (82), Expect = 0.039
Identities = 11/67 (16%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 12 ILLAGQE--NMQSTIRSFAVSLSAEMAPSATIVVYNV---GRNGDVIADSLTFPVNGISR 66
I+ G ++ +S + ++ M PS+ ++VY + + ++++DS+ +
Sbjct: 509 IIHFGTREKFSDASYQSINIPVTQNMVPSSRLLVYYIVTGEQTAELVSDSVWLNIEEKCG 568
Query: 67 NNVNATV 73
N + +
Sbjct: 569 NQLQVHL 575
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune
system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B*
2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B*
2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C*
3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Length = 915
Score = 221 bits (563), Expect = 1e-61
Identities = 103/454 (22%), Positives = 173/454 (38%), Gaps = 51/454 (11%)
Query: 189 QVITQAVSW-VLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247
QV+ AV W +L+ Q PDG F E ++ +++ L N+ +++LTA VLI+L
Sbjct: 350 QVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEK----DMALTAFVLISLQE 405
Query: 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGI 307
KD+ + + +KA +LE N L+ Y VAI YAL
Sbjct: 406 AKDICEEQVNSLPGSITKAGDFLEANYMNLQR---SYTVAIAGYALAQMGRLKGPL---- 458
Query: 308 LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ 367
L + + W N+E T+YALL + +
Sbjct: 459 LNKFLTTAKDKNRWE----------------------DPGKQLYNVEATSYALLALLQLK 496
Query: 368 EL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVSIEATALP 426
+ P+V+WLN QR GG+ STQ T M +AL +Y L VS++ +
Sbjct: 497 DFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAPDHQELNLDVSLQLPSRS 556
Query: 427 GQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQPPVP 486
++ + + + + L+ E + G V A G G L + Y+ Q
Sbjct: 557 SKITH-RIHWESASLLRSEETKENEG-FTVTAEGKGQGTLSVVTMYHAKAKD---QLTCN 611
Query: 487 AFALN----TRANFHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLD 542
F L R Q + + M++LD+++ TG+ L
Sbjct: 612 KFDLKVTIKPAPETEKRPQDAKNTMILEICTRYRGDQDATMSILDISMMTGFAPDTDDLK 671
Query: 543 AYIRTRNV----PNLQRARFQEQKVLFYFDYLDDTE-TCINFTIERWFPVANMSRYLPIR 597
+ L +A ++ Y D + +E C+ F + ++F V + + ++
Sbjct: 672 QLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVELI-QPGAVK 730
Query: 598 VYDYYAPERFNETIFDALPTYLLNICEVCGSSQC 631
VY YY E + T F + ++C C
Sbjct: 731 VYAYYNLEE-SCTRFYHPEKEDGKLNKLCRDELC 763
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A
{Bos taurus}
Length = 1661
Score = 216 bits (551), Expect = 2e-59
Identities = 102/453 (22%), Positives = 184/453 (40%), Gaps = 50/453 (11%)
Query: 189 QVITQAVSW-VLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247
+ + + V W +L+ Q PDG F E ++ +++ D + +++SLTA VLI L
Sbjct: 1097 KDLCETVKWLILEKQKPDGIFQEDGPVIHQEMIGGF----RDTREKDVSLTAFVLIALHE 1152
Query: 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGI 307
KD+ + + +KA +LE + R L+ PY VAI AYAL L +
Sbjct: 1153 AKDICEAQVNSLGRSIAKAGDFLENHYRELRR---PYTVAIAAYALALLGKLEGDR---- 1205
Query: 308 LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ 367
LT+ + W + N+E T+YALL ++R+
Sbjct: 1206 LTKFLNTAKEKNRWEE----------------------PNQKLYNVEATSYALLALLARK 1243
Query: 368 EL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVSIEATALP 426
+ T P+V+WLN QR GG+ STQ T M +AL +Y L VSI+ +
Sbjct: 1244 DYDTTPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDVPDHKELNLDVSIQLPSRN 1303
Query: 427 GQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQPP-- 484
V++ + + L R E + V+A G G L + Y+ + +
Sbjct: 1304 SAVRHRILWESA--SLLRSEETKENERFTVKAEGKGQGTLSVVTVYHAKLKGKVSCKKFD 1361
Query: 485 --VPAFALNTRANFHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLD 542
V + + C +++ + + M++LD+++ TG+ + L
Sbjct: 1362 LRVSIRPAPETVKKPQDAKGSMILDICTKYLGDQD---ATMSILDISMMTGFSPDVEDLK 1418
Query: 543 AYIRT--RNVPNLQRARFQEQ-KVLFYFDYLD-DTETCINFTIERWFPVANMSRYLPIRV 598
R + + R + ++ Y D + E C++F + ++F V + + ++V
Sbjct: 1419 TLSTGVDRYISKYEMNRDSNKNTLIIYLDKVSHTVEDCLSFKVHQYFNVGLI-QPGAVKV 1477
Query: 599 YDYYAPERFNETIFDALPTYLLNICEVCGSSQC 631
Y YY + + + ++C C
Sbjct: 1478 YSYYNLDETCIRFYHP-DKEDGMLSKLCHKDTC 1509
Score = 42.1 bits (97), Expect = 8e-04
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 7/90 (7%)
Query: 12 ILLAGQENMQSTIRSFAVSL--SAEMAPSATIVVY----NVGRNGDVIADSLTFPVNGIS 65
+L G++ + + L +++ PS +V Y N +V+ADS+ V
Sbjct: 498 LLKVGRQYREPGQDLVVLPLTITSDFIPSFRLVAYYTLINAKGQREVVADSVWVDVKDSC 557
Query: 66 RNNVNATV-VFLPIVPVHLGDIDVTVTASS 94
+ I + + A
Sbjct: 558 MGTLVVKNGGKEEKHHRPGQQITLKIEADQ 587
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex;
HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Length = 1642
Score = 214 bits (545), Expect = 1e-58
Identities = 94/456 (20%), Positives = 168/456 (36%), Gaps = 50/456 (10%)
Query: 187 PLQVITQAVSWVLD-HQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITL 245
++I V W++ Q PDG+F E ++ + + ++V LTA +L+ L
Sbjct: 1080 SHEIICGGVRWLILNRQQPDGAFKENAPVLSGTMQGGIQGAEEEV-----YLTAFILVAL 1134
Query: 246 DTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAF 305
K + + + KA +L + L+ PY A+ AYAL + +
Sbjct: 1135 LESKTICNDYVNSLDSSIKKATNYLLKKYEKLQR---PYTTALTAYALAAADQLNDDRVL 1191
Query: 306 GILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVS 365
+ G +W Y NIE T+YALL +
Sbjct: 1192 ------MAASTGRDHWE----------------------EYNAHTHNIEGTSYALLALLK 1223
Query: 366 RQEL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVSIEATA 424
++ T PIV+WL Q + TQ T MA +AL EY + L ++IE
Sbjct: 1224 MKKFDQTGPIVRWLTDQNFYGETYGQTQATVMAFQALAEYEIQMPTHKDLNLDITIELPD 1283
Query: 425 LPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQPP 484
++Y + N + +E + V ASG G A + + YN + +
Sbjct: 1284 REVPIRY-RINYENALLARTVETKLNQ-DITVTASGDGKATMTILTFYNAQLQE--KANV 1339
Query: 485 VPAFALN-TRANFHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDA 543
F LN + N H + S M ++D+++ TG++ + L
Sbjct: 1340 CNKFHLNVSVENIHLNAMGAKGALMLKICTRYLGEVDSTMTIIDISMLTGFLPDAEDLTR 1399
Query: 544 YIRTRNVP----NLQRARFQEQKVLFYFDYLDDTET-CINFTIERWFPVANMSRYLPIRV 598
+ + + Q+ V+ Y + + +E C++F I + F V + ++V
Sbjct: 1400 LSKGVDRYISRYEVDNNMAQKVAVIIYLNKVSHSEDECLHFKILKHFEVGFIQPG-SVKV 1458
Query: 599 YDYYAPERFNETIFDALPTYLLNICEVCGSSQCPYC 634
Y YY + + + ++C + C
Sbjct: 1459 YSYYNLDEKCTKFYHP-DKGTGLLNKICIGNVCRCA 1493
Score = 42.4 bits (98), Expect = 5e-04
Identities = 22/165 (13%), Positives = 56/165 (33%), Gaps = 11/165 (6%)
Query: 12 ILLAGQENMQS--TIRSFAVSLSAEMAPSATIVVYNVGRNGDVIADSLTFPVNGISRNNV 69
I G++ + + + + ++ ++ PS V Y N +++ADS+ V +
Sbjct: 489 IFKVGRQPRRDGQNLVTMNLHITPDLIPSFRFVAYYQVGNNEIVADSVWVDVKDTCMGTL 548
Query: 70 NATVVFLPIVPVHLGDIDVTVTASSLIGRDTVTRKLHIIADGLPQHRHQSILLDLSNRAY 129
L +P I + + +G V + ++++ D + +
Sbjct: 549 VVKGDNLIQMPGAAMKIKLEGDPGARVGLVAVDKAVYVLNDKYK--------ISQAKIWD 600
Query: 130 VFQYLHVNVTETPIIPYDVDRYYVYGSSINSSSISTLKMLLWYSC 174
+ T ++ + G ++ +S+ K C
Sbjct: 601 TIEKSDFGCTAGS-GQNNLGVFEDAGLALTTSTNLNTKQRSAAKC 644
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A
{Homo sapiens} SCOP: a.102.4.4
Length = 367
Score = 150 bits (378), Expect = 5e-40
Identities = 65/233 (27%), Positives = 93/233 (39%), Gaps = 16/233 (6%)
Query: 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTV 248
+ + + +W+L Q DGSF + ++DR + L ++ V +LTA V I L
Sbjct: 142 EKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDETV-----ALTAFVTIALHHG 196
Query: 249 KDLTGG-----LGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKA--TIA 301
+ L RV + SKA +L + AI AYAL L+KA +
Sbjct: 197 LAVFQDEGAEPLKQRVEASISKASSFLGEKAS--AGLLGAHAAAITAYALTLTKAPADLR 254
Query: 302 EAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALL 361
A L A+ G YWG + P + A+ IETTAYALL
Sbjct: 255 GVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALL 314
Query: 362 VYVSRQELLTD--PIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRD 412
+ + WL Q GG+ STQDT +A+ AL Y +
Sbjct: 315 HLLLHEGKAEMADQASAWLTRQGSFQGGFRSTQDTVIALDALSAYWIASHTTE 367
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A
{Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A
2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Length = 277
Score = 135 bits (340), Expect = 9e-36
Identities = 62/218 (28%), Positives = 96/218 (44%), Gaps = 35/218 (16%)
Query: 189 QVITQAVSW-VLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247
QV+ AV W +L+ Q PDG F E ++ +++ + ++SLTA VLI L
Sbjct: 89 QVLCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEA----DVSLTAFVLIALQE 144
Query: 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGI 307
+D+ G + + +KA ++LE + L+ PY VAI YAL L
Sbjct: 145 ARDICEGQVNSLPGSINKAGEYLEASYLNLQR---PYTVAIAGYALALMNKLEEPY---- 197
Query: 308 LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ 367
LT+ + W + N+E T+YALL + +
Sbjct: 198 LTKFLNTAKDRNRWEE----------------------PGQQLYNVEATSYALLALLLLK 235
Query: 368 EL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEY 404
+ P+V+WLN +R GG+ STQ T M +AL +Y
Sbjct: 236 DFDSVPPVVRWLNDERYYGGGYGSTQATFMVFQALAQY 273
>2wy7_A Complement C3D fragment; immune system, immune response, innate
immunity, complement inflammatory response; 1.70A {Homo
sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Length = 310
Score = 127 bits (320), Expect = 9e-33
Identities = 65/237 (27%), Positives = 99/237 (41%), Gaps = 35/237 (14%)
Query: 189 QVITQAVSW-VLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247
QV+ AV W +L+ Q PDG F E ++ +++ L N+ +++LTA VLI+L
Sbjct: 105 QVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEK----DMALTAFVLISLQE 160
Query: 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGI 307
KD+ + + +KA +LE N L+ Y VAI YAL +
Sbjct: 161 AKDICEEQVNSLPGSITKAGDFLEANYMNLQR---SYTVAIAGYALAQMGRLKGP----L 213
Query: 308 LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ 367
L + + W N+E T+YALL + +
Sbjct: 214 LNKFLTTAKDKNRWED----------------------PGKQLYNVEATSYALLALLQLK 251
Query: 368 EL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVSIEAT 423
+ P+V+WLN QR GG+ STQ T M +AL +Y L VS++
Sbjct: 252 DFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAPDHQELNLDVSLQLP 308
>3hrz_C Cobra venom factor; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB:
3frp_B* 3hs0_C*
Length = 379
Score = 129 bits (325), Expect = 1e-32
Identities = 39/232 (16%), Positives = 83/232 (35%), Gaps = 14/232 (6%)
Query: 416 LTVSIEATALPGQVKYLHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVD 475
L ++IE ++Y + N + +E + V ASG G A + + YN
Sbjct: 12 LDITIELPDREVPIRY-RINYENALLARTVETKL-NQDITVTASGDGKATMTILTFYNAQ 69
Query: 476 IAKFQTQPPVPAFALNTRANFHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYI 535
+ + ++ + Y E S M ++D+++ TG++
Sbjct: 70 LQEKANVCNKFHLNVSVENIHLNAMGAKGALMLKICTRYLGEV-DSTMTIIDISMLTGFL 128
Query: 536 IQQQKLDAYIRTRNVP----NLQRARFQEQKVLFYFDYLDDTE-TCINFTIERWFPVANM 590
+ L + + + Q+ V+ Y + + +E C++F I + F V +
Sbjct: 129 PDAEDLTRLSKGVDRYISRYEVDNNMAQKVAVIIYLNKVSHSEDECLHFKILKHFEVGFI 188
Query: 591 SRYLPIRVYDYYAPERFNETIFDALPTYLLNICEVCGSSQC----PYCPIYN 638
+ ++VY YY + + + ++C + C C N
Sbjct: 189 -QPGSVKVYSYYNLDEKCTKFYHP-DKGTGLLNKICIGNVCRCAGETCSSLN 238
>1edy_A Alpha 1-macroglobulin; beta sandwich, pseudo-symmetric dimer,
protein binding; 2.30A {Rattus norvegicus} SCOP: b.2.4.1
Length = 134
Score = 108 bits (272), Expect = 4e-28
Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 10/133 (7%)
Query: 486 PAFALNTRAN----FHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKL 541
F L + H Y E S M ++DV + +G+I + +
Sbjct: 2 APFTLKVNTLPLNFDKAEHHRKFQIHINVS--YIGERPNSNMVIVDVKMVSGFIPVKPSV 59
Query: 542 DAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIRVYDY 601
N+ QR VL Y + L + +F +E+ PV N+ + P++VYDY
Sbjct: 60 KKLQDQSNI---QRTEVNTNHVLIYIEKLTNQTMGFSFAVEQDIPVKNL-KPAPVKVYDY 115
Query: 602 YAPERFNETIFDA 614
Y + F + A
Sbjct: 116 YETDEFAIEEYSA 128
>1ayo_A Alpha-2-macroglobulin; receptor binding domain; HET: NAG; 1.90A
{Bos taurus} SCOP: b.2.4.1 PDB: 1bv8_A
Length = 130
Score = 100 bits (251), Expect = 2e-25
Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 11/131 (8%)
Query: 488 FALNTRA----NFHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDA 543
FAL + + + Y S MA++DV + +G+I + +
Sbjct: 4 FALEVQTLPQTCDGPKAHTSFQISLSVS--YIGSRPASNMAIVDVKMVSGFIPLKPTVKM 61
Query: 544 YIRTRNVPNLQRARFQEQKVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIRVYDYYA 603
R N+ R VL Y D + + + FT+ + PV ++ ++VYDYY
Sbjct: 62 LER----SNVSRTEVSNNHVLIYLDKVTNETLTLTFTVLQDIPVRDLKPA-IVKVYDYYE 116
Query: 604 PERFNETIFDA 614
+ F + A
Sbjct: 117 TDEFAVAEYSA 127
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 2e-08
Identities = 83/563 (14%), Positives = 159/563 (28%), Gaps = 196/563 (34%)
Query: 87 DVTVTASSLIGRDTVTRKLHIIADGLPQHRHQSILLDLSNRAYVFQYLHVNVTETPIIPY 146
D + + + V+R + + LL+L V
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPY-------LKLRQALLELRPAKNVL--------------- 154
Query: 147 DVDRYYVYG------SSINSSSISTLKMLL-------WYSCLLCLYIWETLMLPLQVITQ 193
+ G + + + K+ W + C ET++ LQ +
Sbjct: 155 ------IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-ETVLEMLQKLLY 207
Query: 194 AVSWVLDHQTPDGSF---YETTWLVDRKVN--SSLNWPN-----DDVKFRNI----SLTA 239
+ D S + S + N +V+ +L+
Sbjct: 208 QIDPNW-TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 240 HVLITLDT----VKD-LTGGLGARVSL---------AQSKAI--KWLE---RNLRLLKDF 280
+L+T T V D L+ +SL + K++ K+L+ ++L
Sbjct: 267 KILLT--TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 281 GDPYEVAIVAYALRLSKATIAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIE----NQ 336
+P ++I+A ++R AT W + IE
Sbjct: 325 TNPRRLSIIAESIRDGLATW------------------DNWKHVNCDKLTTIIESSLNVL 366
Query: 337 KPFLLPRLPYKYDAI-----NIETTAYALLVYVSRQELLTDPIVKWLNSQRLTDGGWAST 391
+P ++ + ++ +I T +L+ W +
Sbjct: 367 EPAEYRKM-FDRLSVFPPSAHIPTILLSLI---------------WFDV---------IK 401
Query: 392 QDTAMAMKALIEYTNRHRL--RDVSYLTVSIEATALPGQVKYLHVKNNNLAQLQRIEIPQ 449
D + + L +Y+ L + T+SI P L VK N L R +
Sbjct: 402 SDVMVVVNKLHKYS----LVEKQPKESTISI-----PSIYLELKVKLENEYALHRSIVDH 452
Query: 450 AWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQPPVPAFALNTRANFHGRNQSHITYH-- 507
Y I + + D + D+ P + + F+ SHI +H
Sbjct: 453 -------------YNIPK-TFDSD-DLIP----PYLDQY-------FY----SHIGHHLK 482
Query: 508 SCQ---------------RWIYQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTRNVPN 552
+ + R++ + + A + Q + YI N P
Sbjct: 483 NIEHPERMTLFRMVFLDFRFL-EQKIRHDSTAWNASGSILNTLQQLKFYKPYI-CDNDPK 540
Query: 553 LQRARFQEQKVLFYFDYLDDTET 575
E+ V D+L E
Sbjct: 541 Y------ERLVNAILDFLPKIEE 557
Score = 46.4 bits (109), Expect = 3e-05
Identities = 89/639 (13%), Positives = 174/639 (27%), Gaps = 214/639 (33%)
Query: 114 QHRHQSILLDLSNRAYVFQYLHVNVTETPIIPYDVDRYYV--YGSSINSSS--------- 162
H H + + Y ++ + ++V E + + D V SI S
Sbjct: 1 HHHHHHMDFETGEHQYQYKDI-LSVFEDAFVD-NFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 163 --ISTLKMLLWYSCLLCLYIWETLMLPLQVITQAVSWVLDHQTPDGSFYETTWLVDRKVN 220
+S L W L +++ + V VL + Y+ +L+ +
Sbjct: 59 DAVSGTLRLFW---TLLSK-------QEEMVQKFVEEVLR---IN---YK--FLMSP-IK 99
Query: 221 SSLNWP---------------NDDVKF--RNIS-------LTAHVLITLDTVKDLT---- 252
+ P ND+ F N+S L L+ L K++
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-LLELRPAKNVLIDGV 158
Query: 253 GGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGILTQ-- 310
G G +A + ++ +++ + L L E +L +
Sbjct: 159 LGSGKTW-VALDVC-----LSYKVQCKM--DFKI----FWLNLKNCNSPETVLEMLQKLL 206
Query: 311 -------HARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVY 363
+RS+ + I+ + LL PY+ LLV
Sbjct: 207 YQIDPNWTSRSDHS------SNIKLRIHSIQAELRRLLKSKPYEN----------CLLVL 250
Query: 364 --VSRQELLT--DPIVKWLNSQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYLTVS 419
V + + K L LT T+ + T L S
Sbjct: 251 LNVQNAKAWNAFNLSCKIL----LT------TRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 420 IEATALPGQVKYLHVKNNNL-AQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAK 478
E +L +KYL + +L ++ P ++S+ IA+
Sbjct: 301 DEVKSL--LLKYLDCRPQDLPREVLTT-NP-----------------RRLSI-----IAE 335
Query: 479 FQTQPPVPAFALNTRANFHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQ 538
+ W + N + +++ ++
Sbjct: 336 SIRDGL-----------------ATW-----DNWKHVNCDKLT--TIIESSL-------- 363
Query: 539 QKLDAYIRTRNVPNLQRARFQEQKVLFYFDYLDDTETCINFTIER-WFPVANMSRYLPIR 597
L+ P R F L F + WF ++ +
Sbjct: 364 NVLE--------PAEYRKMFDR---LSVFP--PSAHIPTI-LLSLIWF---DVIKSDV-- 404
Query: 598 VYDYYAPERFNETIFDALPTYLLNICEVCGSSQCPYCPIYNLAVALSCPPVFFLSFFVL- 656
+ + L Y L + S+ I ++ + L + + L
Sbjct: 405 -----------MVVVNKLHKYSLVEKQPKEST----ISIPSIYLELKVKL---ENEYALH 446
Query: 657 -SVVFADGLPQHRHQSILLDLSNRAYVFQYL--HVNVTE 692
S+V +P+ L+ Y + ++ H+ E
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Score = 33.7 bits (76), Expect = 0.28
Identities = 23/209 (11%), Positives = 61/209 (29%), Gaps = 63/209 (30%)
Query: 63 GISRNNVNATVVFLPIV-----PVHLGDIDVTVTASSLIGRD--TVTRKLHIIADGLPQH 115
+ + + + L ++ + + + SL+ + T + I L
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 116 R------HQSIL--------------LDLSNRAYVFQYL--HV-------NVTETPIIPY 146
H+SI+ + Y + ++ H+ +T ++
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 147 DVD------RYYVYGSSINSSSISTLKMLLWYSCLLCLYIWETLMLPLQVITQAVSWVLD 200
D R+ + + S ++TL+ L +Y YI + +++ + ++
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP----YICDNDPKYERLVNAILDFLPK 554
Query: 201 H-----------------QTPDGSFYETT 212
D + +E
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEA 583
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 6e-08
Identities = 57/309 (18%), Positives = 97/309 (31%), Gaps = 110/309 (35%)
Query: 6 KKMMRI---ILLAGQENM-QSTIRSFAVSLSAEM---APSATIVVYNVGR---------- 48
+K + + I + E +++ + S E PS + + N+ +
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 49 N-----GDVIADSLTFPVNGISRNNVNATVVFLPIVPVHLGDIDVTVTASSLIGRDTVTR 103
N G + SL VNG ++N V V+ SL G + R
Sbjct: 357 NSHLPAGKQVEISL---VNG-AKNLV------------------VSGPPQSLYGLNLTLR 394
Query: 104 KLHIIADGLPQHRHQSILLDLSNRAYVF--QYLHVNVTETPI-IPYDVDRYYVYGSSINS 160
K GL Q R + S R F ++L P+ P+ S +
Sbjct: 395 KAKA-PSGLDQSR-----IPFSERKLKFSNRFL-------PVASPFH--------SHLLV 433
Query: 161 SSISTLKMLLWYSCLLCLYIW--ETLMLPLQVITQAVSWVLDHQTPDG------SFYETT 212
+ + L + + + + + +P V D T DG S +
Sbjct: 434 PASDLINKDLVKNNVS----FNAKDIQIP----------VYD--TFDGSDLRVLSGSISE 477
Query: 213 WLVDRKVNSSLNWPNDDVKFRNISLTAHVLI----TLDTVKDLTG----GLGARVSLAQS 264
+VD + + W T H+L + LT G G RV +A +
Sbjct: 478 RIVDCIIRLPVKWETTT----QFKAT-HILDFGPGGASGLGVLTHRNKDGTGVRVIVAGT 532
Query: 265 KAIKWLERN 273
L+ N
Sbjct: 533 -----LDIN 536
Score = 53.1 bits (127), Expect = 3e-07
Identities = 104/612 (16%), Positives = 169/612 (27%), Gaps = 223/612 (36%)
Query: 61 VNGIS-RNNVNATVVFLPIVPVHLGDIDVTV--------TASSLIGRDTVTRKLHIIADG 111
++ S R P+ H G ++ + AS L ++ + L +G
Sbjct: 1 MDAYSTR----------PLTLSH-GSLEHVLLVPTASFFIASQL--QEQFNKILPEPTEG 47
Query: 112 LPQHRHQSILLDLSNRAYVFQYLHVNVTETPIIPYDVDRYYVYGSSINSSSISTLKMLLW 171
+ +L V ++L YV S + S + +L
Sbjct: 48 FAADDEPTTPAEL-----VGKFLG----------------YV-SSLVEPSKVGQFDQVL- 84
Query: 172 YSCLLCLYIWETLMLPLQVI-TQAVSWVLDHQTPDG-------SFYETTWLVDRKV---- 219
LCL +E L I A + ++ T ++ + R
Sbjct: 85 ---NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 220 NSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKD 279
NS+L FR + L+ + GG Q + E LR L
Sbjct: 142 NSAL--------FRAVGEGNAQLVAI------FGG--------QGNTDDYFE-ELRDL-- 176
Query: 280 FGDPYEVAIVAYALRLSKATIAEAAFGILTQHARSEG--------GL--TYWGKEPVPAP 329
Y+ Y + + I +A L++ R+ GL W + P P
Sbjct: 177 ----YQT----YHVLV-GDLIKFSA-ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 330 PSKIENQKPFLLPRLPYKYDAINIETTAYALLVY-VSRQELLTDP-----IVKWL--NSQ 381
K +LL +P I L Y V+ + L P +K +SQ
Sbjct: 227 D------KDYLL-SIPISCPLI----GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 382 RL-------TDGGWAS-TQDTAMAMKAL--IEYTNR-HRLRDVSYLTVSIEATALPGQVK 430
L W S A+ L I R + + L SI +L
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGV--RCYEAYPNTSLPPSILEDSLENNEG 333
Query: 431 Y----LHVKNNNLAQLQRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQPPVP 486
L + N Q+Q + K + P
Sbjct: 334 VPSPMLSISNLTQEQVQDY------------------------------VNKTNSHLPAG 363
Query: 487 ---AFAL-NTRANFHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLD 542
+L N N V+ +G L+
Sbjct: 364 KQVEISLVNGAKNL----------------------------VV-----SGPPQSLYGLN 390
Query: 543 AYIRTRNVPNL--Q-RARFQEQKVLFY--F---------DYLDDTETCINFTIERWFPVA 588
+R P+ Q R F E+K+ F F L IN + + V+
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK-NNVS 449
Query: 589 NMSRYLPIRVYD 600
++ + I VYD
Sbjct: 450 FNAKDIQIPVYD 461
Score = 50.0 bits (119), Expect = 3e-06
Identities = 74/507 (14%), Positives = 137/507 (27%), Gaps = 170/507 (33%)
Query: 17 QENMQSTIRSFAVSLSAEMAPSATIVVYNVGRNGDVIADSLTFPVNGISRNNVNATVVFL 76
QE + +A+ P+ +++ L + + + + V L
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPA---------ELVGKFLGYVSSLVEPSKVGQFDQVL 84
Query: 77 PIVPVH-----LGDIDV-TVTASSLIGRDT-VTRKLHII--------ADGLP-QHRHQSI 120
+ L D+ + A L DT + + +I P + S
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 121 LLDLSN----RAY-VF--Q-----YLHVNVTETPIIPYDVDRYYVYGSSIN---SSSIST 165
L + +F Q Y E D Y Y + S T
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYF----EEL------RDLYQTYHVLVGDLIKFSAET 194
Query: 166 LKMLL--------WYSCLLCLYIW----------ETLM-----LPLQVITQAVSWVLDHQ 202
L L+ ++ L + W + L+ PL + Q +V+ +
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 203 ----TPDGSFYETTWLVDRK--------VNSSLNWPNDDVKFRNISLTA----------- 239
TP + + +W + F A
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES----FFVSVRKAITVLFFIGVRC 310
Query: 240 -----HVLITLDTVKD-LTGGLGA-----RVS-LAQSKAIKWLER-NLRLLKDFGDPYE- 285
+ + ++D L G +S L Q + ++ + N L P
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL------PAGK 364
Query: 286 -VAIVAYALRLSKATIAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPF----- 339
V I +L +++ +S GL AP +++ PF
Sbjct: 365 QVEI---SLV-----NGAKNL-VVSGPPQSLYGLNLT-LRKAKAPSGLDQSRIPFSERKL 414
Query: 340 -----LLP-RLPY--KY--DAI----------NIETTAYALL--VYVSR-----QEL--- 369
LP P+ A N+ A + VY + + L
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Query: 370 LTDPIVKWLNSQRLTDGGW-ASTQDTA 395
+++ IV + + W +TQ A
Sbjct: 475 ISERIVDCIIRLPVK---WETTTQFKA 498
Score = 42.3 bits (99), Expect = 6e-04
Identities = 93/590 (15%), Positives = 161/590 (27%), Gaps = 229/590 (38%)
Query: 198 VLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDV---KFRNISLTAHVLITLD----TVKD 250
L H GS E LV + ++ +F I D T +
Sbjct: 10 TLSH----GSL-EHVLLV-----PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 251 LTGG-LGARVSLAQSKAIKWLERNLRL-LKDFGDPY----EV-AIVA------------- 290
L G LG SL + + ++ L L L +F + Y ++ A+ A
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 291 ------Y--ALRLSKATIAEAAFGILTQHARSE--------GG----LTYWGKEPVPAPP 330
Y A ++K + + L + GG Y+ +E
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF-EE------ 172
Query: 331 SKIENQKPFLLPRLPYK-YDAIN---IETTAYALLVYVSRQELLTDP-------IVKWLN 379
L L Y+ Y + I+ +A L + R L + I++WL
Sbjct: 173 ----------LRDL-YQTYHVLVGDLIKFSA-ETLSELIRTTLDAEKVFTQGLNILEWL- 219
Query: 380 SQRLTDGGWASTQDTAMAMKALIEYTNRHRLRDVSYL---TVSIEATALPGQVKYLHVKN 436
N D YL +S P
Sbjct: 220 -------------------------ENPSNTPDKDYLLSIPIS-----CPL--------- 240
Query: 437 NNLAQLQRIEIPQAWGTVKVQAS--GAGYAILQMSVDYNVDIAKFQTQPPVPAFAL---N 491
+ QL + T K+ G + L+ + ++ + V A A+ +
Sbjct: 241 IGVIQLAHYVV-----TAKLLGFTPGELRSYLKGATGHSQGL--------VTAVAIAETD 287
Query: 492 TRANFHGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTRNVP 551
+ +F + IT +I G+ + A P + D+ VP
Sbjct: 288 SWESFFVSVRKAITVLF---FI--------GVRCYE-AYPNTSLPPSILEDSLENNEGVP 335
Query: 552 -------NLQRARFQEQKVLFYFDYLDDTETCINFTIERWFPVANMSRYLP----IRVYD 600
NL + + Q+ Y++ T N +LP + +
Sbjct: 336 SPMLSISNLTQEQVQD--------YVNKT---------------N--SHLPAGKQVEISL 370
Query: 601 YYAPERFN-----ETIFDALPTYLLNICEVCGSSQC--PYCPIYNLAVALSCPPVFFLSF 653
+ ++++ L L G Q P+ F F
Sbjct: 371 VNGAKNLVVSGPPQSLY-GLNLTLRKAKAPSGLDQSRIPFS---------ERKLKFSNRF 420
Query: 654 FVLSVVFADGLPQHRH------QSILLDLSNRAYVF--QYLHVNV--TET 693
++ F H H I DL F + + + V T
Sbjct: 421 LPVASPF------HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB:
3frp_G* 3hs0_B*
Length = 252
Score = 48.3 bits (114), Expect = 3e-06
Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 11/109 (10%)
Query: 70 NATVVFLPIVPVHLG--DIDVTVTASSLIGRDTVTRKLHIIADGLPQHRHQSILLDLSNR 127
++ V IVP+ G D+++ + + D V +KL ++ +G+ + + LD +
Sbjct: 144 SSRAVPFVIVPLEQGLHDVEIKASVQEALWSDGVRKKLKVVPEGVQKSIVTIVKLDPRAK 203
Query: 128 AYVFQYLHVNVTETP--IIPYDVDRYYVY------GSSINSSSISTLKM 168
L V +P + I +SI K+
Sbjct: 204 GVGGTQLEVIKARKLDDRVPDTEIETKIIIQGDPVAQIIE-NSIDGSKL 251
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic
membrane protein, QW-sequence, repeat; HET: C8E; 2.00A
{Alicyclobacillus acidocaldarius} SCOP: a.102.4.2
a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A*
1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A*
1o79_A* 1sqc_A* 1o6r_A*
Length = 631
Score = 46.4 bits (109), Expect = 3e-05
Identities = 40/285 (14%), Positives = 78/285 (27%), Gaps = 68/285 (23%)
Query: 171 WYSCLLCLYIWETLMLPLQV---------ITQAVSWVLDHQTPDGSFYETTWLVDRKVNS 221
+Y + + + L++ +T+ W++ Q+ +G + + VD +
Sbjct: 371 YYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGW--GAYDVDNT-SD 427
Query: 222 SLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLERN------LR 275
N F ++ +T ++ +A+++L+R
Sbjct: 428 LPNHIPFSD-FGEVTDPPSEDVTAHVLECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWF 486
Query: 276 LLKDFGDPYEVAIVAYALRLSKATIAEAAFGI----LTQHARSEGG-----LTYWGKEPV 326
Y V AL+ E + QH +GG +Y
Sbjct: 487 GRWGVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYA 546
Query: 327 PAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQELLTDPI---VKWLNSQRL 383
S TA+AL+ ++ ++ V++L +
Sbjct: 547 GKGASTPSQ--------------------TAWALMALIAGGRAESEAARRGVQYLVETQR 586
Query: 384 TDGGWASTQDTA-----------------MAMKALIEYTNRHRLR 411
DGGW T AL Y R
Sbjct: 587 PDGGWDEPYYTGTGFPGDFYLGYTMYRHVFPTLALGRYKQAIERR 631
Score = 29.4 bits (65), Expect = 4.4
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 8/68 (11%)
Query: 146 YDVDRYYVYGSSINSSSISTLKMLLWYSCLLCLYIWETLMLPLQVITQAVSWVLDHQTPD 205
Y S+ T L+ + + V ++++ Q PD
Sbjct: 537 CRSYEDPAYAGKGASTPSQTAWALMAL--------IAGGRAESEAARRGVQYLVETQRPD 588
Query: 206 GSFYETTW 213
G + E +
Sbjct: 589 GGWDEPYY 596
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB:
3frp_A* 3hs0_A*
Length = 627
Score = 43.1 bits (100), Expect = 3e-04
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 12 ILLAGQENMQST--IRSFAVSLSAEMAPSATIVVYNVGRNGDVIADSLTFPVNGISRNNV 69
I G++ + + + + ++ ++ PS V Y N +++ADS+ V +
Sbjct: 467 IFKVGRQPRRDGQNLVTMNLHITPDLIPSFRFVAYYQVGNNEIVADSVWVDVKDTCMGTL 526
Query: 70 NATVVFLPIVPVHLGDIDVTVTASSLIG 97
L +P I + + +G
Sbjct: 527 VVKGDNLIQMPGAAMKIKLEGDPGARVG 554
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane
protein, B-octyl-glucoside, isomerase, steroid
biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP:
a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Length = 732
Score = 41.7 bits (97), Expect = 8e-04
Identities = 40/254 (15%), Positives = 82/254 (32%), Gaps = 64/254 (25%)
Query: 189 QVITQAVSWVLDHQTPDGSF--YET--TWLVDRKVNSSLNWPNDDVKFRNISLTAHVLIT 244
+ + AV+ +L+ + PDG F YET + +N S + + + + + T+ V+
Sbjct: 481 ERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQA 540
Query: 245 LDTV-KDLTGGLGARVSLAQSKAIKWLERN----------------------LRLLKDFG 281
L K A + ++ +++ R L G
Sbjct: 541 LKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMG 600
Query: 282 DPYEVAIVAYALRLSKATIAEAAFGILTQHARSEGG-----LTYWGKEPVPAPPSKIENQ 336
Y + A L ++GG + + V + S+I N
Sbjct: 601 QTYRDGTACAEVS--------RACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHN- 651
Query: 337 KPFLLPRLPYKYDAINIETTAYALLVYVSRQELLTDPI---VKWLNSQRLTDGGWASTQD 393
T +A++ ++ + + V+ L ++L +G W
Sbjct: 652 -------------------TCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQENI 692
Query: 394 TAMAMKAL-IEYTN 406
+ K+ I YT+
Sbjct: 693 AGVFNKSCAISYTS 706
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.2 bits (90), Expect = 0.001
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 9/38 (23%)
Query: 263 QSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATI 300
+ +A+K L+ +L+L D P A A+ KAT+
Sbjct: 18 EKQALKKLQASLKLYADDSAP------ALAI---KATM 46
Score = 33.8 bits (76), Expect = 0.078
Identities = 8/42 (19%), Positives = 20/42 (47%), Gaps = 17/42 (40%)
Query: 4 EKKKMMRIILLAGQENMQSTIRSFAVSLSAEMAPS----ATI 41
EK+ + + +Q++++ +A + AP+ AT+
Sbjct: 18 EKQALKK---------LQASLKLYA----DDSAPALAIKATM 46
Score = 33.4 bits (75), Expect = 0.12
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 11/39 (28%)
Query: 366 RQELLTDPIVKWLNSQ-RLTDGGWASTQDTAMAMKALIE 403
+Q L K L + +L +A A+A+KA +E
Sbjct: 19 KQAL------KKLQASLKL----YADDSAPALAIKATME 47
Score = 31.8 bits (71), Expect = 0.37
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 25/49 (51%)
Query: 443 QRIEIPQAWGTVKVQASGAGYAILQMSVDYNVDIAKFQTQPPVPAFALN 491
Q ++ K+QAS L++ Y D A PA A+
Sbjct: 20 QALK--------KLQAS------LKL---YADDSA--------PALAIK 43
>2hr0_A Complement C3 beta chain; complement component C3B, immune system;
HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A*
2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A*
3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A*
2xwb_A*
Length = 645
Score = 37.0 bits (84), Expect = 0.024
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 12 ILLAGQENMQSTIRSFAVSL--SAEMAPSATIVVYNV----GRNGDVIADSLTFPVNGIS 65
+L AG++ + + L + + PS +V Y +V+ADS+ V
Sbjct: 478 LLKAGRQVREPGQDLVVLPLSITTDFIPSFRLVAYYTLIGASGQREVVADSVWVDVKDSC 537
Query: 66 RNNVNATVVFLPIVPVHLGD---IDVTVTASSLIG 97
++ G + + + +
Sbjct: 538 VGSLVVKSGQSEDRQPVPGQQMTLKIEGDHGARVV 572
>3dra_B Geranylgeranyltransferase type I beta subunit;
geranylgeranyltrasferase, ggtase, ggtase-I, PGGT,
prenyltransferase, farnesyltransferase; HET: B3P GRG;
1.80A {Candida albicans}
Length = 390
Score = 34.4 bits (78), Expect = 0.12
Identities = 11/105 (10%), Positives = 34/105 (32%), Gaps = 4/105 (3%)
Query: 172 YSCLLCLYIWETLMLPLQVITQAVSWVLDHQTPDGSF---YETTWLVDRKVNSSLNWPND 228
L L I ++ + + ++++ Q DG + T + + +
Sbjct: 98 LFALYNLLILKSPYHTIINRKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEP 157
Query: 229 DVKFRNISL-TAHVLITLDTVKDLTGGLGARVSLAQSKAIKWLER 272
D++ ++L H++ D + + +++
Sbjct: 158 DLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILD 202
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense}
SCOP: a.102.5.1
Length = 408
Score = 30.9 bits (69), Expect = 1.3
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 191 ITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWP-NDDVKFRNISLTAHVLITLDTVK 249
+ + ++L Q P+G + + + NDD L + + D
Sbjct: 177 ALKGIEYLLASQFPNGGWPQV---WPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFG 233
Query: 250 DLTGGLGARVSLAQSKAIKWL 270
+ + R A + AI +
Sbjct: 234 FVPPAIRTRALEATNAAIHCI 254
>2ka3_A Emilin-1; C1Q-like domain, homotrimeric protein complex,
beta-sandwich, structural protein, cell adhesion,
extracellular matrix; NMR {Homo sapiens} PDB: 2oii_A
Length = 162
Score = 30.0 bits (67), Expect = 1.5
Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 7/107 (6%)
Query: 26 SFAVSLSAEMAPSATI----VVYNVGRNGDVIADSLTFPVNGISRNNVNATVVFLPIVPV 81
+F+ +LS + T+ V+ N G D T P+ G + T V
Sbjct: 18 AFSAALSLPRSEPGTVPFDRVLLNDGGYYDPETGVFTAPLAGRYLLSAVLTGHRHEKVEA 77
Query: 82 HLGDIDVTVTASSLIGRDTVTRKLHIIADGLPQHRHQ---SILLDLS 125
L + V G + + +A+ P S++L L
Sbjct: 78 VLSRSNQGVARVDSGGYEPEGLENKPVAESQPSPGTLGVFSLILPLQ 124
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 31.0 bits (70), Expect = 1.8
Identities = 22/103 (21%), Positives = 29/103 (28%), Gaps = 25/103 (24%)
Query: 250 DLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGILT 309
DL GGL L + A +L K+ + EV KA E A
Sbjct: 726 DLNGGLQFVPELKEFTA--------KLRKELVETSEVR---------KAVSIETALEHKV 768
Query: 310 QHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAIN 352
+ S V P N + P L Y +
Sbjct: 769 VNGNSADAAY----AQVEIQPR--ANIQ-LDFPELK-PYKQVK 803
>1kkc_A Mnsod, manganese superoxide dismutase; homotetramer,
oxidoreductase; 2.00A {Aspergillus fumigatus} SCOP:
a.2.11.1 d.44.1.1
Length = 221
Score = 30.3 bits (69), Expect = 1.9
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 322 GKEPVPAPPSKIENQKPFLLPRLPYKYDA 350
G P+ P + + + + LP LPY YDA
Sbjct: 1 GTSPIQTPINTM--SQQYTLPPLPYPYDA 27
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6
motif two domain P transport protein; HET: NAG B12;
2.60A {Homo sapiens} PDB: 3kq4_A*
Length = 399
Score = 29.7 bits (66), Expect = 3.2
Identities = 11/45 (24%), Positives = 16/45 (35%)
Query: 357 AYALLVYVSRQELLTDPIVKWLNSQRLTDGGWASTQDTAMAMKAL 401
+ A+L + T PI L + + AMA AL
Sbjct: 118 SLAILALCQKNSEATLPIAVRFAKTLLANSSPFNVDTGAMATLAL 162
>2cw3_A Pmsod2, iron superoxide dismutase; oxidoreductase; 2.50A {Perkinsus
marinus}
Length = 280
Score = 29.7 bits (67), Expect = 3.2
Identities = 13/65 (20%), Positives = 17/65 (26%), Gaps = 4/65 (6%)
Query: 286 VAIVAYALRLSKATIAEAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLP 345
V +V +A L + S GL P L LP
Sbjct: 30 VLLVYFAETLFVVCRGSMDSRAVRHAIPSGKGLRAKP----FVPSRSGVAPSSGLRMTLP 85
Query: 346 YKYDA 350
Y +A
Sbjct: 86 YGLEA 90
>1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET:
DDQ; 2.99A {Equus caballus}
Length = 452
Score = 29.6 bits (66), Expect = 3.5
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 597 RVYDYYAPERFNETIFDALP-----TYLLNICEVCGSSQCPY 633
+ ++YY+ N F A P + N C C + CP
Sbjct: 267 KSFEYYSSSILNPDGFLAYPCDSYDKFQENGCFPCPAGGCPK 308
>2r31_A ATP12 ATPase; chaperone F1 ATPase assembly ATP12P, chaperone; 1.00A
{Paracoccus denitrificans} SCOP: d.381.1.1 PDB: 2p4x_A
2zd2_A
Length = 239
Score = 29.3 bits (65), Expect = 4.1
Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 10/102 (9%)
Query: 363 YVSRQELLTDPIVKWLNSQR-----LTDGGWASTQD--TAMAMKALIEYTNRHRLRDVSY 415
V Q DP++ W ++ +T G QD + ++A + + L +
Sbjct: 112 LVRAQAEGWDPLIDWAATELRAPLRITHGVIPVPQDPVVLLKLRAEVASLDPFGLTALHD 171
Query: 416 LTVSIEATALPGQVKYLHVKNNNLAQLQRIE-IPQA--WGTV 454
L + L V + L RI+ QA WG
Sbjct: 172 LVTLPGSLILGLAVIRGRIDAPTAHALSRIDEEFQAERWGRD 213
>1gv3_A Manganese superoxide dismutase; anabaena PCC 7120,; 2.0A {Anabaena
SP} SCOP: a.2.11.1 d.44.1.1
Length = 248
Score = 29.2 bits (66), Expect = 4.3
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 327 PAPPSKIENQKPFLLPRLPYKYDA 350
+ P LP LPY YDA
Sbjct: 26 IGFIDRQLGTNPAELPPLPYGYDA 49
>1b06_A Protein (superoxide dismutase); oxidoreductase; 2.20A {Sulfolobus
acidocaldarius} SCOP: a.2.11.1 d.44.1.1 PDB: 1wb8_A*
1wb7_A
Length = 210
Score = 28.7 bits (65), Expect = 5.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 331 SKIENQKPFLLPRLPYKYDA 350
+++ K + P+LPYK DA
Sbjct: 1 TQVIQLKRYEFPQLPYKVDA 20
>3qvn_A Manganese-containing superoxide dismutase; Mn superoxide dismutase,
oxidoreductase; 2.60A {Candida albicans}
Length = 206
Score = 28.3 bits (64), Expect = 7.7
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 333 IENQKPFLLPRLPYKYDA 350
I + LP++ + DA
Sbjct: 2 ITENEKISLPKIDWALDA 19
>1mng_A Manganese superoxide dismutase; oxidoreductase(superoxide
acceptor); 1.80A {Thermus thermophilus} SCOP: a.2.11.1
d.44.1.1 PDB: 3mds_A
Length = 203
Score = 28.3 bits (64), Expect = 7.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 338 PFLLPRLPYKYDA 350
PF LP L Y Y+A
Sbjct: 3 PFKLPDLGYPYEA 15
>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid
degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP:
b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*
Length = 452
Score = 28.5 bits (63), Expect = 9.2
Identities = 13/42 (30%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 597 RVYDYYAPERFNETIFDALP-----TYLLNICEVCGSSQCPY 633
R Y YYA N F P + N C C CP
Sbjct: 267 RSYKYYASSILNPDGFLGYPCSSYEKFQQNDCFPCPEEGCPK 308
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.411
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,966,264
Number of extensions: 668619
Number of successful extensions: 1584
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1503
Number of HSP's successfully gapped: 79
Length of query: 713
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 613
Effective length of database: 3,909,693
Effective search space: 2396641809
Effective search space used: 2396641809
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.2 bits)