RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy742
(713 letters)
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 326
Score = 134 bits (338), Expect = 2e-35
Identities = 66/225 (29%), Positives = 94/225 (41%), Gaps = 16/225 (7%)
Query: 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTV 248
+ + + +W+L Q DGSF + ++DR + L ++ ++LTA V I L
Sbjct: 103 EKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLVGNDET-----VALTAFVTIALHHG 157
Query: 249 KDLTGGLGA-----RVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKA--TIA 301
+ GA RV + SKA +L + AI AYAL L+KA +
Sbjct: 158 LAVFQDEGAEPLKQRVEASISKASSFLGEKAS--AGLLGAHAAAITAYALTLTKAPADLR 215
Query: 302 EAAFGILTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALL 361
A L A+ G YWG + P + A+ IETTAYALL
Sbjct: 216 GVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALL 275
Query: 362 VYVSRQELLT--DPIVKWLNSQRLTDGGWASTQDTAMAMKALIEY 404
+ + D WL Q GG+ STQDT +A+ AL Y
Sbjct: 276 HLLLHEGKAEMADQASAWLTRQGSFQGGFRSTQDTVIALDALSAY 320
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement
receptor 2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 294
Score = 113 bits (284), Expect = 2e-28
Identities = 61/218 (27%), Positives = 94/218 (43%), Gaps = 35/218 (16%)
Query: 189 QVITQAVSWVL-DHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDT 247
QV+ AV W++ + Q PDG F E ++ +++ L N+ +++LTA VLI+L
Sbjct: 105 QVLCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEK----DMALTAFVLISLQE 160
Query: 248 VKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRLSKATIAEAAFGI 307
KD+ + + +KA +LE N L+ Y VAI YAL +
Sbjct: 161 AKDICEEQVNSLPGSITKAGDFLEANYMNLQR---SYTVAIAGYALAQMGRLKGP----L 213
Query: 308 LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAYALLVYVSRQ 367
L + + W N+E T+YALL + +
Sbjct: 214 LNKFLTTAKDKNRWE----------------------DPGKQLYNVEATSYALLALLQLK 251
Query: 368 EL-LTDPIVKWLNSQRLTDGGWASTQDTAMAMKALIEY 404
+ P+V+WLN QR GG+ STQ T M +AL +Y
Sbjct: 252 DFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQY 289
>d1ayoa_ b.2.4.1 (A:) alpha-2-macroglobulin {Cow (Bos taurus)
[TaxId: 9913]}
Length = 130
Score = 97.2 bits (242), Expect = 2e-24
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 497 HGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTRNVPNLQRA 556
+ + Y S MA++DV + +G+I + + R N+ R
Sbjct: 17 GPKAHTSFQISLSVS--YIGSRPASNMAIVDVKMVSGFIPLKPTVKMLER----SNVSRT 70
Query: 557 RFQEQKVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIRVYDYYAPERFNETIFDA 614
VL Y D + + + FT+ + PV ++ ++VYDYY + F + A
Sbjct: 71 EVSNNHVLIYLDKVTNETLTLTFTVLQDIPVRDLKPA-IVKVYDYYETDEFAVAEYSA 127
>d1edya_ b.2.4.1 (A:) alpha-1-macroglobulin {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 134
Score = 96.5 bits (240), Expect = 3e-24
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 497 HGRNQSHITYHSCQRWIYQNESARSGMAVLDVAIPTGYIIQQQKLDAYIRTRNVPNLQRA 556
+ H Y E S M ++DV + +G+I + + ++ N+QR
Sbjct: 17 KAEHHRKFQIHINVS--YIGERPNSNMVIVDVKMVSGFIPVKPSVKKL---QDQSNIQRT 71
Query: 557 RFQEQKVLFYFDYLDDTETCINFTIERWFPVANMSRYLPIRVYDYYAPERFNETIFDA 614
VL Y + L + +F +E+ PV N+ + P++VYDYY + F + A
Sbjct: 72 EVNTNHVLIYIEKLTNQTMGFSFAVEQDIPVKNL-KPAPVKVYDYYETDEFAIEEYSA 128
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 448
Score = 44.3 bits (104), Expect = 4e-05
Identities = 41/249 (16%), Positives = 81/249 (32%), Gaps = 54/249 (21%)
Query: 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNI-------SLTAHV 241
+ + AV+ +L+ + PDG F T+ R L N F +I T+ V
Sbjct: 197 ERLCDAVAVLLNMRNPDGGF--ATYETKRG-GHLLELLNPSEVFGDIMIDYTYVECTSAV 253
Query: 242 LITLDTV-KDLTGGLGARVSLAQSKAIKWLERNLR----LLKDFGDPYEVAIVAYALRLS 296
+ L K A + ++ +++ R R +G + +
Sbjct: 254 MQALKYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFA 313
Query: 297 KA-----------TIAEAA-FGILTQHA---RSEGGLTYWGKEPVPAPPSKIENQKPFLL 341
++ A F + Q A E + + V + S+I N
Sbjct: 314 CMGQTYRDGTACAEVSRACDFLLSRQMADGGWGEDFESCEERRYVQSAQSQIHN------ 367
Query: 342 PRLPYKYDAINIETTAYALLVYVSRQELLTDPI---VKWLNSQRLTDGGWASTQDTAMAM 398
T +A++ ++ + + V+ L ++L +G W +
Sbjct: 368 --------------TCWAMMGLMAVRHPDIEAQERGVRCLLEKQLPNGDWPQENIAGVFN 413
Query: 399 KAL-IEYTN 406
K+ I YT+
Sbjct: 414 KSCAISYTS 422
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase
{Alicyclobacillus acidocaldarius [TaxId: 405212]}
Length = 352
Score = 39.0 bits (90), Expect = 0.002
Identities = 31/213 (14%), Positives = 65/213 (30%), Gaps = 32/213 (15%)
Query: 189 QVITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTV 248
+T+ W++ Q+ +G + + N F ++ +T +
Sbjct: 120 DAMTKGFRWIVGMQSSNGGWGAYDVDNTSDL---PNHIPFSD-FGEVTDPPSEDVTAHVL 175
Query: 249 KDLTGGLGARVSLAQSKAIKWLERNLR------LLKDFGDPYEVAIVAYALRLSKATIAE 302
+ +A+++L+R + Y V AL+ E
Sbjct: 176 ECFGSFGYDDAWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDTRE 235
Query: 303 AAFGI----LTQHARSEGGLTYWGKEPVPAPPSKIENQKPFLLPRLPYKYDAINIETTAY 358
+ QH +GG WG++ + TA+
Sbjct: 236 PYIQKALDWVEQHQNPDGG---WGEDCRSYEDPAYAGKGA------------STPSQTAW 280
Query: 359 ALLVYVSRQELLTDPI---VKWLNSQRLTDGGW 388
AL+ ++ ++ V++L + DGGW
Sbjct: 281 ALMALIAGGRAESEAARRGVQYLVETQRPDGGW 313
Score = 29.7 bits (66), Expect = 1.2
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 25/111 (22%)
Query: 171 WYSCLLCLYIWET--LMLPL---------QVITQAVSWVLDHQTPDGSFYETTWLVDRKV 219
W+ Y++ T ++ L I +A+ WV HQ PDG + E +
Sbjct: 207 WFGRWGVNYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPA 266
Query: 220 NSSLNWPNDDVKFRNISLTAHVLITLDTVKDLTGGLGARVSLAQSKAIKWL 270
+ S TA L+ L + GG + + +++L
Sbjct: 267 YAGKGAS-------TPSQTAWALMAL-----IAGGRAESEAAR--RGVQYL 303
Score = 27.8 bits (61), Expect = 4.8
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 374 IVKWLNSQRLTDGGWAS-----TQDTAMAMKALIE 403
V++L S + +G W DT +A+ AL
Sbjct: 11 AVEYLLSCQKDEGYWWGPLISPVWDTGLAVLALRA 45
Score = 27.8 bits (61), Expect = 4.9
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 190 VITQAVSWVLDHQTPDGSFYE 210
+ V ++++ Q PDG + E
Sbjct: 295 AARRGVQYLVETQRPDGGWDE 315
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase)
{Azospirillum irakense [TaxId: 34011]}
Length = 408
Score = 32.3 bits (73), Expect = 0.19
Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 191 ITQAVSWVLDHQTPDGSFYETTWLVDRKVNSSLNWPNDDVKFRNISLTAHVLITLDTVKD 250
+ + ++L Q P+G + W ++ + ++ + NDD L + + D
Sbjct: 177 ALKGIEYLLASQFPNGGWP-QVWPLEGGYHDAITY-NDDALVHVAELLSDIAAGRDGFGF 234
Query: 251 LTGGLGARVSLAQSKAIKWLER 272
+ + R A + AI +
Sbjct: 235 VPPAIRTRALEATNAAIHCIVE 256
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 193
Score = 29.2 bits (64), Expect = 1.2
Identities = 10/106 (9%), Positives = 29/106 (27%), Gaps = 11/106 (10%)
Query: 534 YIIQQQKLDAYIRTRNVP-NLQRARFQEQKVLFYFDYLDDTETCINFTIERWFPVANMSR 592
Y + ++++ Y+ +P + + QK+ Y+++ + +I
Sbjct: 7 YQEKYKQVEQYMSFHKLPADFR------QKIHDYYEHRYQGKMFDEDSILGELN----GP 56
Query: 593 YLPIRVYDYYAPERFNETIFDALPTYLLNICEVCGSSQCPYCPIYN 638
V + +F + + Y
Sbjct: 57 LREEIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYI 102
>d1ma1a1 a.2.11.1 (A:4-91) Fe superoxide dismutase (FeSOD) {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 88
Score = 27.7 bits (61), Expect = 1.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 336 QKPFLLPRLPYKYDAI 351
+K + LP LPY YDA+
Sbjct: 2 KKFYELPELPYPYDAL 17
>d1gv3a1 a.2.11.1 (A:25-126) Mn superoxide dismutase (MnSOD)
{Anabaena sp. [TaxId: 1167]}
Length = 102
Score = 28.1 bits (62), Expect = 1.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 337 KPFLLPRLPYKYDAI 351
P LP LPY YDA+
Sbjct: 12 NPAELPPLPYGYDAL 26
>d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 186
Score = 28.5 bits (64), Expect = 1.9
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 246 DTVKDLTGGLGARVSLAQSKAIKWLERNLRLLKDFGDPYEVAIVAYALRL 295
+ L G V A S A+ + R + FG V I+A LR+
Sbjct: 76 EARDALLE-RGVNV-YAGSHALSGVGRGIS--NRFGGVTPVEIMAETLRM 121
>d1mnga1 a.2.11.1 (A:1-92) Mn superoxide dismutase (MnSOD) {Thermus
thermophilus [TaxId: 274]}
Length = 92
Score = 27.3 bits (60), Expect = 2.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 338 PFLLPRLPYKYDAI 351
PF LP L Y Y+A+
Sbjct: 3 PFKLPDLGYPYEAL 16
>d1p7ga1 a.2.11.1 (A:12-103) Fe superoxide dismutase (FeSOD)
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 92
Score = 27.3 bits (60), Expect = 2.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 337 KPFLLPRLPYKYDAI 351
K + LP LPY Y+A+
Sbjct: 5 KRYTLPPLPYAYNAL 19
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 279
Score = 27.9 bits (62), Expect = 4.2
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 176 LCLYIWETLMLPLQVITQAVSWVLDHQTPDGSF 208
+ ++ LP + V ++ Q PDG +
Sbjct: 11 ITCHVARIP-LPAGYREEIVRYLRSVQLPDGGW 42
>d1kkca1 a.2.11.1 (A:14-97) Mn superoxide dismutase (MnSOD)
{Aspergillus fumigatus [TaxId: 5085]}
Length = 84
Score = 26.1 bits (57), Expect = 4.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 337 KPFLLPRLPYKYDA 350
+ + LP LPY YDA
Sbjct: 1 QQYTLPPLPYPYDA 14
>d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Dog (Canis familiaris) [TaxId: 9615]}
Length = 337
Score = 27.8 bits (61), Expect = 5.1
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 595 PIRVYDYYAPERFNETIFDALP-----TYLLNICEVCGSSQCPY 633
+R Y YY+ N F + P + N C C CP
Sbjct: 264 HLRSYKYYSESILNPDGFASYPCASYRAFESNKCFPCPDQGCPQ 307
>d1wb8a1 a.2.11.1 (A:4-92) Fe superoxide dismutase (FeSOD) {Archaeon
Sulfolobus solfataricus [TaxId: 2287]}
Length = 89
Score = 26.2 bits (57), Expect = 5.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 337 KPFLLPRLPYKYDAI 351
K + LP LPYK DA+
Sbjct: 4 KKYELPPLPYKIDAL 18
>d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 338
Score = 27.4 bits (60), Expect = 5.6
Identities = 13/42 (30%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 597 RVYDYYAPERFNETIFDALP-----TYLLNICEVCGSSQCPY 633
R Y YYA N F P + N C C CP
Sbjct: 267 RSYKYYASSILNPDGFLGYPCSSYEKFQQNDCFPCPEEGCPK 308
>d1ix9a1 a.2.11.1 (A:1-90) Mn superoxide dismutase (MnSOD)
{Escherichia coli [TaxId: 562]}
Length = 90
Score = 25.3 bits (55), Expect = 8.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 339 FLLPRLPYKYDAI 351
+ LP LPY YDA+
Sbjct: 2 YTLPSLPYAYDAL 14
>d1bsma1 a.2.11.1 (A:1-86) Cambialistic superoxide dismutase
{Propionibacterium shermanii [TaxId: 1752]}
Length = 86
Score = 25.4 bits (55), Expect = 8.9
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 338 PFLLPRLPYKYDA 350
+ LP LPY Y A
Sbjct: 2 VYTLPELPYDYSA 14
>d1idsa1 a.2.11.1 (A:2-85) Fe superoxide dismutase (FeSOD)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 84
Score = 25.4 bits (55), Expect = 9.3
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 338 PFLLPRLPYKYDA 350
+ LP L + Y A
Sbjct: 2 EYTLPDLDWDYGA 14
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.411
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,646,196
Number of extensions: 124483
Number of successful extensions: 342
Number of sequences better than 10.0: 1
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 31
Length of query: 713
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 621
Effective length of database: 1,144,436
Effective search space: 710694756
Effective search space used: 710694756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.9 bits)