BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7420
(59 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CMQ|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanine
Trna Synthetase
pdb|3HFV|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanyl-Trna
Synthetase Complexed With M-Tyrosine
pdb|3TEG|A Chain A, Bacterial And Eukaryotic Phenylalanyl-Trna Synthetases
Catalyze Misaminoacylation Of Trnaphe With
3,4-Dihydroxy-L-Phenylalanine (L- Dopa)
pdb|3TUP|A Chain A, Crystal Structure Of Human Mitochondrial Phers Complexed
With Trnaphe In The Active Open State
Length = 415
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 1 MQLYSIPDIRIFFSEDSGFLNQFRTEDVNQKIVFKFL 37
M LY IPDIR+F+ ED FL QF ++NQK+ F+ L
Sbjct: 285 MILYDIPDIRLFWCEDERFLKQFCVSNINQKVKFQPL 321
>pdb|2AKW|A Chain A, Crystal Structure Of T.thermophilus Phenylalanyl-trna
Synthetase Complexed With P-cl-phenylalanine
pdb|2ALY|A Chain A, Crystal Structure Of T.Thermophilus Phenylalanyl-Trna
Synthetase Complexed With
5'-O-[n-(L-Tyrosyl)sulphamoyl]adenosine
pdb|2AMC|A Chain A, Crystal Structure Of Phenylalanyl-Trna Synthetase
Complexed With L- Tyrosine
Length = 266
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 1 MQLYSIPDIRIFFSEDSGFLNQFR 24
M Y IPDIR FF FL QF+
Sbjct: 240 MLRYGIPDIRYFFGGRLKFLEQFK 263
>pdb|1PYS|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
pdb|1B7Y|A Chain A, Phenylalanyl Trna Synthetase Complexed With
Phenylalaninyl-Adenylate
pdb|1EIY|A Chain A, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
Thermus Thermophilus Complexed With Cognate Trnaphe
pdb|1B70|A Chain A, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
pdb|1JJC|A Chain A, Crystal Structure At 2.6a Resolution Of Phenylalanyl-trna
Synthetase Complexed With Phenylalanyl-adenylate In The
Presence Of Manganese
pdb|2IY5|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
Complexed With Trna And A Phenylalanyl-Adenylate Analog
pdb|3HFZ|A Chain A, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With M-Tyrosine
pdb|3TEH|A Chain A, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With L-Dopa
Length = 350
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 1 MQLYSIPDIRIFFSEDSGFLNQFR 24
M Y IPDIR FF FL QF+
Sbjct: 324 MLRYGIPDIRYFFGGRLKFLEQFK 347
>pdb|2RHQ|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|C Chain C, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 294
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 1 MQLYSIPDIRIFFSEDSGFLNQFRT 25
M Y I DIR F++ D FL QF+
Sbjct: 264 MLKYGIEDIRYFYTNDVRFLEQFKA 288
>pdb|3PCO|A Chain A, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
pdb|3PCO|C Chain C, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
Length = 327
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 1 MQLYSIPDIRIFFSEDSGFLNQFR 24
M Y + D+R FF D FL QF+
Sbjct: 304 MLRYGVTDLRSFFENDLRFLKQFK 327
>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-2
Length = 403
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 13 FSEDSGFLNQFRTEDVNQKIVFKFLLRELLLPRSYRPEIEERMKT 57
++ D+GF N +N K+V + + LPR E E M+T
Sbjct: 240 YTHDAGFDNDIALIKLNNKVVINSNITPICLPRK---EAESFMRT 281
>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2
pdb|1Q3X|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-2
Length = 328
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 13 FSEDSGFLNQFRTEDVNQKIVFKFLLRELLLPRSYRPEIEERMKT 57
++ D+GF N +N K+V + + LPR E E M+T
Sbjct: 165 YTHDAGFDNDIALIKLNNKVVINSNITPICLPRK---EAESFMRT 206
>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2
pdb|4FXG|J Chain J, Complement C4 In Complex With Masp-2
Length = 242
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 13 FSEDSGFLNQFRTEDVNQKIVFKFLLRELLLPRSYRPEIEERMKT 57
++ D+GF N +N K+V + + LPR E E M+T
Sbjct: 79 YTHDAGFDNDIALIKLNNKVVINSNITPICLPRK---EAESFMRT 120
>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 242
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 13 FSEDSGFLNQFRTEDVNQKIVFKFLLRELLLPRSYRPEIEERMKT 57
++ D+GF N +N K+V + + LPR E E M+T
Sbjct: 79 YTHDAGFDNDIALIKLNNKVVINSNITPICLPRK---EAESFMRT 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.145 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,641,089
Number of Sequences: 62578
Number of extensions: 49039
Number of successful extensions: 104
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 10
length of query: 59
length of database: 14,973,337
effective HSP length: 30
effective length of query: 29
effective length of database: 13,095,997
effective search space: 379783913
effective search space used: 379783913
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)