BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7420
         (59 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6AYQ3|SYFM_RAT Phenylalanine--tRNA ligase, mitochondrial OS=Rattus norvegicus
           GN=Fars2 PE=2 SV=1
          Length = 472

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/35 (60%), Positives = 26/35 (74%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQFRTEDVNQKIVFK 35
           M LY IPDIR+F+SED  FL QFR  D+NQ + F+
Sbjct: 321 MVLYDIPDIRLFWSEDERFLKQFRLSDINQSVKFQ 355


>sp|Q99M01|SYFM_MOUSE Phenylalanine--tRNA ligase, mitochondrial OS=Mus musculus GN=Fars2
           PE=2 SV=1
          Length = 451

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/37 (56%), Positives = 26/37 (70%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQFRTEDVNQKIVFKFL 37
           M LY IPDIR+F+SED  FL QF   D+NQ + F+ L
Sbjct: 321 MVLYDIPDIRLFWSEDERFLKQFLLSDINQSVKFQPL 357


>sp|O95363|SYFM_HUMAN Phenylalanine--tRNA ligase, mitochondrial OS=Homo sapiens GN=FARS2
           PE=1 SV=1
          Length = 451

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/37 (54%), Positives = 26/37 (70%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQFRTEDVNQKIVFKFL 37
           M LY IPDIR+F+ ED  FL QF   ++NQK+ F+ L
Sbjct: 321 MILYDIPDIRLFWCEDERFLKQFCVSNINQKVKFQPL 357


>sp|O16129|SYFM_DROME Probable phenylalanine--tRNA ligase, mitochondrial OS=Drosophila
           melanogaster GN=Aats-phe PE=2 SV=3
          Length = 453

 Score = 41.6 bits (96), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/29 (58%), Positives = 24/29 (82%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQFRTEDVN 29
           M L+ IPDIR+F+S DSGFL+QF  +D++
Sbjct: 319 MVLFDIPDIRLFWSNDSGFLSQFSEKDLH 347


>sp|Q86A68|SYFM_DICDI Phenylalanine--tRNA ligase, mitochondrial OS=Dictyostelium
           discoideum GN=mpheS PE=3 SV=1
          Length = 454

 Score = 35.8 bits (81), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 15/27 (55%), Positives = 22/27 (81%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQFRTED 27
           M L++IPDIR+F++ED+ F NQF+  D
Sbjct: 300 MILFNIPDIRLFWTEDNRFHNQFKGVD 326


>sp|Q9RRX8|SYFA_DEIRA Phenylalanine--tRNA ligase alpha subunit OS=Deinococcus radiodurans
           (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 /
           NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=pheS PE=3
           SV=1
          Length = 339

 Score = 31.6 bits (70), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQFRTE 26
           M  Y IPDIR F++ D   + QFR E
Sbjct: 312 MLKYGIPDIRYFYANDPRVIGQFRGE 337


>sp|C1CYT5|SYFA_DEIDV Phenylalanine--tRNA ligase alpha subunit OS=Deinococcus deserti
           (strain VCD115 / DSM 17065 / LMG 22923) GN=pheS PE=3
           SV=1
          Length = 339

 Score = 31.2 bits (69), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQFRTE 26
           M  Y IPDIR F++ D   + QFR E
Sbjct: 312 MLKYGIPDIRYFYANDPRVIGQFRGE 337


>sp|B8E0D9|SYFA_DICTD Phenylalanine--tRNA ligase alpha subunit OS=Dictyoglomus turgidum
           (strain Z-1310 / DSM 6724) GN=pheS PE=3 SV=1
          Length = 339

 Score = 31.2 bits (69), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQF 23
           MQ+Y I DIR+F+  D  FL QF
Sbjct: 317 MQIYGIDDIRLFYENDVRFLKQF 339


>sp|Q1J1V8|SYFA_DEIGD Phenylalanine--tRNA ligase alpha subunit OS=Deinococcus
           geothermalis (strain DSM 11300) GN=pheS PE=3 SV=1
          Length = 339

 Score = 31.2 bits (69), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQFRTE 26
           M  Y IPDIR F++ D   + QFR E
Sbjct: 312 MLKYGIPDIRYFYANDPRVIGQFRGE 337


>sp|Q1G9C7|SYFA_LACDA Phenylalanine--tRNA ligase alpha subunit OS=Lactobacillus
           delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM
           20081) GN=pheS PE=3 SV=1
          Length = 349

 Score = 31.2 bits (69), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 14/24 (58%), Positives = 17/24 (70%)

Query: 4   YSIPDIRIFFSEDSGFLNQFRTED 27
           Y I DIR F+S+D  FL QFR E+
Sbjct: 325 YGIDDIRDFYSDDVRFLQQFRQEE 348


>sp|B5YER5|SYFA_DICT6 Phenylalanine--tRNA ligase alpha subunit OS=Dictyoglomus
           thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)
           GN=pheS PE=3 SV=1
          Length = 339

 Score = 30.8 bits (68), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQF 23
           MQ+Y I DIR+F+  D  FL QF
Sbjct: 317 MQIYGIDDIRLFYENDIRFLKQF 339


>sp|A8YWB7|SYFA_LACH4 Phenylalanine--tRNA ligase alpha subunit OS=Lactobacillus
           helveticus (strain DPC 4571) GN=pheS PE=3 SV=1
          Length = 349

 Score = 30.8 bits (68), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 4   YSIPDIRIFFSEDSGFLNQFRTED 27
           Y I DIR F++ D  FL QFR E+
Sbjct: 325 YGIDDIRDFYTNDVRFLKQFRKEE 348


>sp|Q21KD6|SYFA_SACD2 Phenylalanine--tRNA ligase alpha subunit OS=Saccharophagus
           degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=pheS
           PE=3 SV=1
          Length = 337

 Score = 30.8 bits (68), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQF 23
           M  Y + D+R+FF  D  FLNQF
Sbjct: 315 MLRYGVNDLRLFFENDLDFLNQF 337


>sp|O74952|SYFM_SCHPO Phenylalanine--tRNA ligase, mitochondrial OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=mfs1 PE=3 SV=1
          Length = 429

 Score = 30.8 bits (68), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 14/23 (60%), Positives = 16/23 (69%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQF 23
           M LY IPDIR+F+S D  F  QF
Sbjct: 305 MILYGIPDIRLFWSLDERFSKQF 327


>sp|Q94K73|SYFM_ARATH Phenylalanine--tRNA ligase, chloroplastic/mitochondrial
           OS=Arabidopsis thaliana GN=At3g58140 PE=1 SV=1
          Length = 429

 Score = 30.4 bits (67), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQF 23
           M L+ IPDIR F+S D  F +QF
Sbjct: 303 MVLFDIPDIRFFWSSDERFTSQF 325


>sp|Q891T7|SYFA_CLOTE Phenylalanine--tRNA ligase alpha subunit OS=Clostridium tetani
           (strain Massachusetts / E88) GN=pheS PE=3 SV=1
          Length = 339

 Score = 30.0 bits (66), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQF 23
           MQ Y I DIR+ +  D  FLNQF
Sbjct: 317 MQKYGIDDIRLLYESDMRFLNQF 339


>sp|A1AWT1|SYFA_RUTMC Phenylalanine--tRNA ligase alpha subunit OS=Ruthia magnifica subsp.
           Calyptogena magnifica GN=pheS PE=3 SV=1
          Length = 339

 Score = 30.0 bits (66), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQFR 24
           M  Y + D+R+FF  DS FL QFR
Sbjct: 316 MLRYGVNDLRLFFENDSRFLRQFR 339


>sp|Q7NGP0|SYFA_GLOVI Phenylalanine--tRNA ligase alpha subunit OS=Gloeobacter violaceus
           (strain PCC 7421) GN=pheS PE=3 SV=1
          Length = 338

 Score = 30.0 bits (66), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQF 23
           M LY I DIR+F++ D  FL QF
Sbjct: 316 MLLYDINDIRLFYTNDLRFLRQF 338


>sp|A9B8B9|SYFA_HERA2 Phenylalanine--tRNA ligase alpha subunit OS=Herpetosiphon
           aurantiacus (strain ATCC 23779 / DSM 785) GN=pheS PE=3
           SV=1
          Length = 346

 Score = 29.6 bits (65), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 14/23 (60%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQF 23
           M  Y I DIR FFS D  FL QF
Sbjct: 323 MLRYDIDDIRWFFSNDGRFLEQF 345


>sp|Q7VR67|SYFA_BLOFL Phenylalanine--tRNA ligase alpha subunit OS=Blochmannia floridanus
           GN=pheS PE=3 SV=1
          Length = 335

 Score = 29.6 bits (65), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQF 23
           M LY + DIR+FF  D  FL+QF
Sbjct: 313 MLLYHMTDIRVFFENDLQFLDQF 335


>sp|Q492V1|SYFA_BLOPB Phenylalanine--tRNA ligase alpha subunit OS=Blochmannia
           pennsylvanicus (strain BPEN) GN=pheS PE=3 SV=1
          Length = 331

 Score = 29.6 bits (65), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQFR 24
           M  Y+I DIR+FF  D  FL+QF+
Sbjct: 308 MLQYNIDDIRVFFKNDLQFLDQFK 331


>sp|A1WMG9|SYFA_VEREI Phenylalanine--tRNA ligase alpha subunit OS=Verminephrobacter
           eiseniae (strain EF01-2) GN=pheS PE=3 SV=1
          Length = 350

 Score = 29.6 bits (65), Expect = 5.8,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQFR 24
           M  Y + D+R+FF  D  FL+QFR
Sbjct: 327 MLRYGVSDLRLFFDGDIRFLSQFR 350


>sp|Q3Z9I8|SYFA_DEHE1 Phenylalanine--tRNA ligase alpha subunit OS=Dehalococcoides
           ethenogenes (strain 195) GN=pheS PE=3 SV=1
          Length = 346

 Score = 29.3 bits (64), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQF 23
           M  Y I DIR+F+S D+ FL QF
Sbjct: 324 MLRYGIDDIRLFYSNDTRFLRQF 346


>sp|Q5FIY6|SYFA_LACAC Phenylalanine--tRNA ligase alpha subunit OS=Lactobacillus
           acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM)
           GN=pheS PE=3 SV=1
          Length = 349

 Score = 29.3 bits (64), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 4   YSIPDIRIFFSEDSGFLNQFRTED 27
           Y I DIR F++ D  FL QFR E+
Sbjct: 325 YGIDDIRDFYTNDVRFLEQFRKEE 348


>sp|A8MI78|SYFA_ALKOO Phenylalanine--tRNA ligase alpha subunit OS=Alkaliphilus oremlandii
           (strain OhILAs) GN=pheS PE=3 SV=1
          Length = 339

 Score = 29.3 bits (64), Expect = 7.2,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQF 23
           MQ Y I DIR+ F  D  F++QF
Sbjct: 317 MQKYGIDDIRLLFENDMRFIDQF 339


>sp|Q3ZZD3|SYFA_DEHSC Phenylalanine--tRNA ligase alpha subunit OS=Dehalococcoides sp.
           (strain CBDB1) GN=pheS PE=3 SV=1
          Length = 346

 Score = 29.3 bits (64), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQF 23
           M  Y I DIR+F+S D+ FL QF
Sbjct: 324 MLRYGIDDIRLFYSNDTRFLRQF 346


>sp|A5FS95|SYFA_DEHSB Phenylalanine--tRNA ligase alpha subunit OS=Dehalococcoides sp.
           (strain BAV1) GN=pheS PE=3 SV=1
          Length = 346

 Score = 29.3 bits (64), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQF 23
           M  Y I DIR+F+S D+ FL QF
Sbjct: 324 MLRYGIDDIRLFYSNDTRFLRQF 346


>sp|Q0VNG2|SYFA_ALCBS Phenylalanine--tRNA ligase alpha subunit OS=Alcanivorax borkumensis
           (strain SK2 / ATCC 700651 / DSM 11573) GN=pheS PE=3 SV=1
          Length = 339

 Score = 29.3 bits (64), Expect = 7.6,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQF 23
           M  Y + D+R+FF  D+ FL+QF
Sbjct: 316 MLRYGVNDLRLFFENDTRFLSQF 338


>sp|Q74IE1|SYFA_LACJO Phenylalanine--tRNA ligase alpha subunit OS=Lactobacillus johnsonii
           (strain CNCM I-12250 / La1 / NCC 533) GN=pheS PE=3 SV=1
          Length = 349

 Score = 29.3 bits (64), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 4   YSIPDIRIFFSEDSGFLNQFRTED 27
           Y I DIR F++ D  FL QFR E+
Sbjct: 325 YGISDIRDFYTNDVRFLAQFRKEE 348


>sp|Q041W8|SYFA_LACGA Phenylalanine--tRNA ligase alpha subunit OS=Lactobacillus gasseri
           (strain ATCC 33323 / DSM 20243) GN=pheS PE=3 SV=1
          Length = 349

 Score = 29.3 bits (64), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 4   YSIPDIRIFFSEDSGFLNQFRTED 27
           Y I DIR F++ D  FL QFR E+
Sbjct: 325 YGISDIRDFYTNDVRFLAQFRKEE 348


>sp|A5FLW1|SYFA_FLAJ1 Phenylalanine--tRNA ligase alpha subunit OS=Flavobacterium
           johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)
           GN=pheS PE=3 SV=1
          Length = 339

 Score = 29.3 bits (64), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQFRT 25
           M LY I DIR+F+  D  FL QF+ 
Sbjct: 313 MLLYQIGDIRMFYENDVRFLEQFKA 337


>sp|Q02NN7|SYFA_PSEAB Phenylalanine--tRNA ligase alpha subunit OS=Pseudomonas aeruginosa
           (strain UCBPP-PA14) GN=pheS PE=3 SV=1
          Length = 338

 Score = 28.9 bits (63), Expect = 8.4,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQFR 24
           M  Y + D+R+FF  D  FL QFR
Sbjct: 315 MLRYGVNDLRLFFDNDLRFLGQFR 338


>sp|Q9I0A3|SYFA_PSEAE Phenylalanine--tRNA ligase alpha subunit OS=Pseudomonas aeruginosa
           (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
           GN=pheS PE=3 SV=1
          Length = 338

 Score = 28.9 bits (63), Expect = 8.5,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQFR 24
           M  Y + D+R+FF  D  FL QFR
Sbjct: 315 MLRYGVNDLRLFFDNDLRFLGQFR 338


>sp|B7V310|SYFA_PSEA8 Phenylalanine--tRNA ligase alpha subunit OS=Pseudomonas aeruginosa
           (strain LESB58) GN=pheS PE=3 SV=1
          Length = 338

 Score = 28.9 bits (63), Expect = 8.5,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQFR 24
           M  Y + D+R+FF  D  FL QFR
Sbjct: 315 MLRYGVNDLRLFFDNDLRFLGQFR 338


>sp|A6V489|SYFA_PSEA7 Phenylalanine--tRNA ligase alpha subunit OS=Pseudomonas aeruginosa
           (strain PA7) GN=pheS PE=3 SV=1
          Length = 338

 Score = 28.9 bits (63), Expect = 8.5,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQFR 24
           M  Y + D+R+FF  D  FL QFR
Sbjct: 315 MLRYGVNDLRLFFDNDLRFLGQFR 338


>sp|A0M6W9|SYFA_GRAFK Phenylalanine--tRNA ligase alpha subunit OS=Gramella forsetii
           (strain KT0803) GN=pheS PE=3 SV=1
          Length = 339

 Score = 28.9 bits (63), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQFRT 25
           M LY I DIR+F+  D  FL QF++
Sbjct: 313 MLLYQIEDIRMFYENDLRFLEQFKS 337


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.145    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,975,460
Number of Sequences: 539616
Number of extensions: 640996
Number of successful extensions: 2157
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2098
Number of HSP's gapped (non-prelim): 60
length of query: 59
length of database: 191,569,459
effective HSP length: 32
effective length of query: 27
effective length of database: 174,301,747
effective search space: 4706147169
effective search space used: 4706147169
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)