Query psy7420
Match_columns 59
No_of_seqs 103 out of 361
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 17:49:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cmq_A Phenylalanyl-tRNA synth 99.8 1.7E-20 5.9E-25 137.7 1.0 54 1-54 285-338 (415)
2 1b7y_A Phers, protein (phenyla 99.0 3.7E-11 1.3E-15 86.9 1.1 25 1-25 324-348 (350)
3 2rhq_A Phenylalanyl-tRNA synth 99.0 3.3E-11 1.1E-15 84.0 0.0 26 1-26 264-289 (294)
4 3pco_A Phenylalanyl-tRNA synth 99.0 5E-11 1.7E-15 86.0 0.4 24 1-24 304-327 (327)
5 2du3_A O-phosphoseryl-tRNA syn 98.5 5.2E-09 1.8E-13 80.0 -2.9 38 1-43 335-374 (534)
6 3l4g_A Phenylalanyl-tRNA synth 96.9 0.00031 1.1E-08 53.5 1.9 28 1-28 466-495 (508)
7 3pco_B Phenylalanyl-tRNA synth 95.0 0.0035 1.2E-07 49.3 -0.3 25 31-55 694-718 (795)
8 2rhq_B Phenylalanyl-tRNA synth 94.8 0.005 1.7E-07 48.2 -0.0 48 3-55 674-721 (795)
9 1b7y_B Phers, protein (phenyla 93.9 0.006 2.1E-07 48.0 -1.3 43 3-55 662-705 (785)
10 2du7_A O-phosphoseryl-tRNA syn 93.6 0.0059 2E-07 47.1 -1.8 19 34-52 352-370 (549)
11 2odr_D Phosphoseryl-tRNA synth 92.7 0.011 3.8E-07 47.0 -1.5 19 34-52 359-377 (685)
12 2odr_C Phosphoseryl-tRNA synth 92.7 0.012 4E-07 46.9 -1.4 19 34-52 359-377 (701)
13 2odr_B Phosphoseryl-tRNA synth 92.6 0.01 3.6E-07 46.8 -1.8 19 34-52 359-377 (648)
14 2odr_A Phosphoseryl-tRNA synth 92.5 0.011 3.8E-07 46.8 -1.8 19 34-52 359-377 (665)
15 3qtc_A Pyrrolysyl-tRNA synthet 81.0 0.24 8.2E-06 33.7 -0.6 14 1-14 265-278 (290)
16 3dsq_A Pyrrolysyl-tRNA synthet 66.4 1 3.4E-05 31.1 -0.4 15 1-15 262-276 (288)
17 1eh2_A EPS15; calcium binding, 21.1 31 0.0011 19.9 0.8 20 32-51 87-106 (106)
No 1
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=99.78 E-value=1.7e-20 Score=137.73 Aligned_cols=54 Identities=37% Similarity=0.578 Sum_probs=48.3
Q ss_pred CccCCCCcccccccCChhhhhccCCCCCCCccceeecccCCCCCccchHhhHhh
Q psy7420 1 MQLYSIPDIRIFFSEDSGFLNQFRTEDVNQKIVFKFLLRELLLPRSYRPEIEER 54 (59)
Q Consensus 1 MlkygIpDIRlfws~D~RFL~QF~~~~~~~~~~Fkp~SkyPp~~rd~s~~i~~~ 54 (59)
|++|||||||+||++|+|||+||+.....+..+|+|+|+||++.||+||+|++.
T Consensus 285 ~~~~~i~DiR~~~~~d~rfl~qf~~~~~~~~~~~~~~skfP~v~RDla~~v~~~ 338 (415)
T 3cmq_A 285 MILYDIPDIRLFWCEDERFLKQFCVSNINQKVKFQPLSKYPAVINDISFWLPSE 338 (415)
T ss_dssp HHHSCCCCGGGGGCCCHHHHGGGCCSSTTSCCCCCCCCCCCCEEEEEEEECCTT
T ss_pred hhhcCcchhhhhhcccHHHHHhcccccccccccccCcCCCCCcceeEEEEEcCC
Confidence 679999999999999999999998775533469999999999999999999664
No 2
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.03 E-value=3.7e-11 Score=86.94 Aligned_cols=25 Identities=52% Similarity=0.883 Sum_probs=23.8
Q ss_pred CccCCCCcccccccCChhhhhccCC
Q psy7420 1 MQLYSIPDIRIFFSEDSGFLNQFRT 25 (59)
Q Consensus 1 MlkygIpDIRlfws~D~RFL~QF~~ 25 (59)
|++|||+|||+||++|+|||+||+.
T Consensus 324 ml~~gi~DiR~~~~~d~rfl~qf~~ 348 (350)
T 1b7y_A 324 MLRYGIPDIRYFFGGRLKFLEQFKG 348 (350)
T ss_dssp HHHTTCCCGGGTTSCCHHHHGGGTT
T ss_pred HHHcCCChHHHHhcCCHHHHHhhhc
Confidence 8999999999999999999999964
No 3
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.01 E-value=3.3e-11 Score=84.01 Aligned_cols=26 Identities=46% Similarity=0.836 Sum_probs=24.1
Q ss_pred CccCCCCcccccccCChhhhhccCCC
Q psy7420 1 MQLYSIPDIRIFFSEDSGFLNQFRTE 26 (59)
Q Consensus 1 MlkygIpDIRlfws~D~RFL~QF~~~ 26 (59)
|++|||+|||+||++|+|||+||+..
T Consensus 264 m~~~~i~diR~~~~~d~rfl~qf~~~ 289 (294)
T 2rhq_A 264 MLKYGIEDIRYFYTNDVRFLEQFKAV 289 (294)
T ss_dssp HHHHTCCCTTHHHHCCHHHHTTCCSC
T ss_pred HHHcCCCHHHHHhcCCHHHHHHhCcc
Confidence 78999999999999999999999743
No 4
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=98.99 E-value=5e-11 Score=85.98 Aligned_cols=24 Identities=46% Similarity=0.877 Sum_probs=23.1
Q ss_pred CccCCCCcccccccCChhhhhccC
Q psy7420 1 MQLYSIPDIRIFFSEDSGFLNQFR 24 (59)
Q Consensus 1 MlkygIpDIRlfws~D~RFL~QF~ 24 (59)
|++|||+|||+||+||+|||+||+
T Consensus 304 ml~~~i~diR~~~~~d~rfl~qf~ 327 (327)
T 3pco_A 304 MLRYGVTDLRSFFENDLRFLKQFK 327 (327)
T ss_dssp HHHHTCSCGGGGTTCCHHHHHTTC
T ss_pred HHHcCCcHHHHHHhcChhHHhccC
Confidence 799999999999999999999995
No 5
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=98.47 E-value=5.2e-09 Score=80.03 Aligned_cols=38 Identities=16% Similarity=-0.004 Sum_probs=33.9
Q ss_pred CccCCCCcccccccCCh--hhhhccCCCCCCCccceeecccCCCC
Q psy7420 1 MQLYSIPDIRIFFSEDS--GFLNQFRTEDVNQKIVFKFLLRELLL 43 (59)
Q Consensus 1 MlkygIpDIRlfws~D~--RFL~QF~~~~~~~~~~Fkp~SkyPp~ 43 (59)
|++|||+|||+||++|+ |||+||. ++ ..++|+|++|.+
T Consensus 335 Ml~~gi~DIR~~~~~d~~~rfl~qf~--~i---~~~~~~~~~P~~ 374 (534)
T 2du3_A 335 MILYGYDDVRKMVYPQIHGEIKLSDL--DI---AREIKVKEVPQT 374 (534)
T ss_dssp HHHTTCSCHHHHHCTTTTTCCCCCHH--HH---HHHCEESSCCSS
T ss_pred HhhcCCchhhhhhcccccHhHHhhhh--hh---hcCccHhhCCCc
Confidence 78999999999999999 9999994 34 688999999954
No 6
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=96.91 E-value=0.00031 Score=53.50 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=24.6
Q ss_pred CccCCCCcccccccC--ChhhhhccCCCCC
Q psy7420 1 MQLYSIPDIRIFFSE--DSGFLNQFRTEDV 28 (59)
Q Consensus 1 MlkygIpDIRlfws~--D~RFL~QF~~~~~ 28 (59)
|++|||+|||.|+++ |+.|++.-..+-+
T Consensus 466 ml~~gi~diR~l~~~~~dl~~~~~~~~~~~ 495 (508)
T 3l4g_A 466 MIKYGINNIRELVGHKVNLQMVYDSPLCRL 495 (508)
T ss_dssp TTTTTCSCGGGTSSTTCCHHHHHHCCCTTS
T ss_pred HHHcCCcHHHHHhcCCcCHHHHhhCcchhh
Confidence 899999999999998 9999998766554
No 7
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=95.03 E-value=0.0035 Score=49.34 Aligned_cols=25 Identities=12% Similarity=-0.083 Sum_probs=21.9
Q ss_pred ccceeecccCCCCCccchHhhHhhh
Q psy7420 31 KIVFKFLLRELLLPRSYRPEIEERM 55 (59)
Q Consensus 31 ~~~Fkp~SkyPp~~rd~s~~i~~~~ 55 (59)
..+|+|+|+||++.||+||.+++..
T Consensus 694 ~~~~~~~skfP~v~RDlA~vv~~~v 718 (795)
T 3pco_B 694 VPQAREISRFPANRRDIAVVVAENV 718 (795)
T ss_dssp CCCCCCCCCSCCEEEEEEEEEETTS
T ss_pred CCCcCCCCCCCCcceeEEEEeCCCC
Confidence 3789999999999999999997653
No 8
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=94.79 E-value=0.005 Score=48.24 Aligned_cols=48 Identities=10% Similarity=0.065 Sum_probs=34.8
Q ss_pred cCCCCcccccccCChhhhhccCCCCCCCccceeecccCCCCCccchHhhHhhh
Q psy7420 3 LYSIPDIRIFFSEDSGFLNQFRTEDVNQKIVFKFLLRELLLPRSYRPEIEERM 55 (59)
Q Consensus 3 kygIpDIRlfws~D~RFL~QF~~~~~~~~~~Fkp~SkyPp~~rd~s~~i~~~~ 55 (59)
.|||+.= ..|+=|+.-|.+-... ..+|+|+|+||++.||+++.+++..
T Consensus 674 ~~~l~~~-~afEL~le~L~~~~~~----~~~~~~~skfP~v~RDlA~vv~~~v 721 (795)
T 2rhq_B 674 DNDLKRT-YVFELNYDAMMQVAVG----YINYEQIPKFPGVTRDIALEVNHDV 721 (795)
T ss_dssp HTTCCSE-EEEEEEHHHHTTCCCC----SCCCCCCCSSCCEEEEEECBEETTS
T ss_pred HcCCCCc-EEEEEEHHHHhhhccc----CCccCCCCCCCCcceeEEEEECCCC
Confidence 4677644 7788777655432221 1589999999999999999997643
No 9
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=93.90 E-value=0.006 Score=47.96 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=31.4
Q ss_pred cCCCCccc-ccccCChhhhhccCCCCCCCccceeecccCCCCCccchHhhHhhh
Q psy7420 3 LYSIPDIR-IFFSEDSGFLNQFRTEDVNQKIVFKFLLRELLLPRSYRPEIEERM 55 (59)
Q Consensus 3 kygIpDIR-lfws~D~RFL~QF~~~~~~~~~~Fkp~SkyPp~~rd~s~~i~~~~ 55 (59)
.|||+ + ..|+=|+. |. -. . .+|+|+|+||++.||++|.+++..
T Consensus 662 ~~~l~--~v~afEl~Ld-L~-~~-----~-~~~~~~skfP~v~RDlA~vv~~~v 705 (785)
T 1b7y_B 662 ELELP--PVHLFELRLP-LP-DK-----P-LAFQDPSRHPAAFRDLAVVVPAPT 705 (785)
T ss_dssp HTTCC--CCEEEEEEES-CC-CC-----C-CCCCCCCCSCCEEEEECCCEESSS
T ss_pred HCCCC--cEEEEEEEee-hh-hC-----c-ccccCCCCCCCcceeEEEEeCCCC
Confidence 36665 4 56666766 54 11 1 589999999999999999986543
No 10
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=93.58 E-value=0.0059 Score=47.10 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=16.1
Q ss_pred eeecccCCCCCccchHhhH
Q psy7420 34 FKFLLRELLLPRSYRPEIE 52 (59)
Q Consensus 34 Fkp~SkyPp~~rd~s~~i~ 52 (59)
|+++|+||++-||+++-|+
T Consensus 352 ~~dlsrFPav~RDlAlvVd 370 (549)
T 2du7_A 352 YPQFYEYRLSDRDIAGMIR 370 (549)
T ss_dssp SSSSSCCCCCHHHHHTTCC
T ss_pred cCCcccCCcccccEEEEEc
Confidence 4567899999999999887
No 11
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=92.69 E-value=0.011 Score=46.97 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=16.1
Q ss_pred eeecccCCCCCccchHhhH
Q psy7420 34 FKFLLRELLLPRSYRPEIE 52 (59)
Q Consensus 34 Fkp~SkyPp~~rd~s~~i~ 52 (59)
|+++|+||++-||+++-|+
T Consensus 359 ~~dISRFPaV~RDIAlVVd 377 (685)
T 2odr_D 359 YPQFYEHKLNDRNVASMVK 377 (685)
T ss_dssp CGGGSCCCCCHHHHHHHEE
T ss_pred cCCcCCCCcccccEEEEEC
Confidence 4567899999999999886
No 12
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=92.67 E-value=0.012 Score=46.94 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=16.2
Q ss_pred eeecccCCCCCccchHhhH
Q psy7420 34 FKFLLRELLLPRSYRPEIE 52 (59)
Q Consensus 34 Fkp~SkyPp~~rd~s~~i~ 52 (59)
|+++|+||++-||+++-|+
T Consensus 359 ~~dISRFPaV~RDIAlVVd 377 (701)
T 2odr_C 359 YPQFYEHKLNDRNVASMVK 377 (701)
T ss_dssp CGGGSCCCCCHHHHHHHBC
T ss_pred cCCcCCCCccccCEEEEEC
Confidence 4667899999999999886
No 13
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=92.57 E-value=0.01 Score=46.80 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=15.8
Q ss_pred eeecccCCCCCccchHhhH
Q psy7420 34 FKFLLRELLLPRSYRPEIE 52 (59)
Q Consensus 34 Fkp~SkyPp~~rd~s~~i~ 52 (59)
|+++|+||++-||+++-|+
T Consensus 359 ~~diSRFPaV~RDIAlVVd 377 (648)
T 2odr_B 359 YPQFYEHKLNDRNVASMVK 377 (648)
T ss_dssp CGGGSCCCCCHHHHHTTEE
T ss_pred cCCcCCCCcccccEEEEEC
Confidence 4567889999999998885
No 14
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=92.46 E-value=0.011 Score=46.82 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=15.8
Q ss_pred eeecccCCCCCccchHhhH
Q psy7420 34 FKFLLRELLLPRSYRPEIE 52 (59)
Q Consensus 34 Fkp~SkyPp~~rd~s~~i~ 52 (59)
|+++|+||++-||+++-|+
T Consensus 359 ~~diSRFPaV~RDIAlVVd 377 (665)
T 2odr_A 359 YPQFYEHKLNDRNVASMVK 377 (665)
T ss_dssp CGGGSCCCCCHHHHHTTEE
T ss_pred cCCcCCCCcccccEEEEEC
Confidence 4567889999999998885
No 15
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=81.05 E-value=0.24 Score=33.69 Aligned_cols=14 Identities=7% Similarity=-0.107 Sum_probs=12.0
Q ss_pred CccCCCCccccccc
Q psy7420 1 MQLYSIPDIRIFFS 14 (59)
Q Consensus 1 MlkygIpDIRlfws 14 (59)
|++|||+|||.|..
T Consensus 265 ~~~~~~~dir~~~~ 278 (290)
T 3qtc_A 265 KVKHDFKNIKRAAR 278 (290)
T ss_dssp HHHHTCSSGGGGSS
T ss_pred HHHcCCcHHHHHhc
Confidence 57899999999873
No 16
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=66.40 E-value=1 Score=31.12 Aligned_cols=15 Identities=7% Similarity=-0.006 Sum_probs=12.8
Q ss_pred CccCCCCcccccccC
Q psy7420 1 MQLYSIPDIRIFFSE 15 (59)
Q Consensus 1 MlkygIpDIRlfws~ 15 (59)
|+++||+|||.+..+
T Consensus 262 m~~~g~~~iR~~~~~ 276 (288)
T 3dsq_A 262 MIREGTQHVQSMARS 276 (288)
T ss_dssp HHHHTCSCGGGGSSC
T ss_pred HHHcCCchhhcCCCC
Confidence 688999999998753
No 17
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=21.09 E-value=31 Score=19.92 Aligned_cols=20 Identities=15% Similarity=-0.296 Sum_probs=11.5
Q ss_pred cceeecccCCCCCccchHhh
Q psy7420 32 IVFKFLLRELLLPRSYRPEI 51 (59)
Q Consensus 32 ~~Fkp~SkyPp~~rd~s~~i 51 (59)
..=-|-++.||+-|..+.+|
T Consensus 87 P~~LP~~l~pps~r~~~~~~ 106 (106)
T 1eh2_A 87 PMSLPPALVPPSKRKTWLEI 106 (106)
T ss_dssp CSSCCTTTSCTTCC------
T ss_pred CCCCCcccCChhhccccccC
Confidence 44468899999999888765
Done!