RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7420
         (59 letters)



>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha
           subunit, PheS {Thermus thermophilus [TaxId: 274]}
          Length = 266

 Score = 40.4 bits (94), Expect = 2e-06
 Identities = 13/24 (54%), Positives = 14/24 (58%)

Query: 1   MQLYSIPDIRIFFSEDSGFLNQFR 24
           M  Y IPDIR FF     FL QF+
Sbjct: 240 MLRYGIPDIRYFFGGRLKFLEQFK 263


>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 276

 Score = 21.8 bits (46), Expect = 7.8
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 27 DVNQKIVFKFLLRELLLPRSYRPEIEERM 55
          DV QK   K L + L+   S   + E  M
Sbjct: 50 DVFQKFYAKMLAKRLVHQNSASDDAEASM 78


>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain
           {Mastadenovirus H2 [TaxId: 10515]}
          Length = 203

 Score = 21.6 bits (46), Expect = 8.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 29  NQKIVFKFLLRELLLPRSYRPEIEE 53
           NQ+ ++ FL R     RS+  +I  
Sbjct: 169 NQEQLYSFLERHSPYFRSHSAQIRS 193


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.145    0.414 

Gapped
Lambda     K      H
   0.267   0.0563    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 227,792
Number of extensions: 8420
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 4
Length of query: 59
Length of database: 2,407,596
Length adjustment: 29
Effective length of query: 30
Effective length of database: 2,009,426
Effective search space: 60282780
Effective search space used: 60282780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.3 bits)