BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7421
(465 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin
Length = 424
Score = 269 bits (687), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 134/246 (54%), Positives = 176/246 (71%), Gaps = 8/246 (3%)
Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
G+W ++ +K L GD GLV S+AKHHAISA L+KPF+F+ P ++QYEV FQ+ +CG
Sbjct: 59 GKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECG 118
Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
GAY+KLL++ P L +L F+DKTPYTIMFGPDKCG D K+HFI RH+NP G EKH K
Sbjct: 119 GAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAK 177
Query: 343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
+P +L ++++ HLYTL+L PDN + + +D + G+LL++ T PP+NP +EI
Sbjct: 178 --RPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLNDMT--PPVNPSREI 233
Query: 400 VDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSA 459
D D+KP WDER KIPDP+ KP+DW+ED P +I D EA KPDGWL DEP+ +PDP A
Sbjct: 234 EDPEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDA 293
Query: 460 VKPADW 465
KP DW
Sbjct: 294 EKPEDW 299
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 64/92 (69%)
Query: 37 DKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMI 96
D++MDGEWEAPQI NP C APGCG W P+I NP +KGKW PPMI+NPNY G W PR I
Sbjct: 300 DEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKI 359
Query: 97 PNPEYYHDAEPFKLFPIVSTLQEQVEKKNRIF 128
PNP+++ D EPFK+ P + E + IF
Sbjct: 360 PNPDFFEDLEPFKMTPFSAIGLELWSMTSDIF 391
>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin
And Arm Domains Of Calreticulin
Length = 332
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 104/210 (49%), Gaps = 19/210 (9%)
Query: 222 LGQWSIEPLKLHP-LVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHD 280
G++ + K + L D GL A+ +A+SA + PF V+Q+ V + D
Sbjct: 32 FGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKFE-PFSNKGQTLVVQFTVKHEQNID 90
Query: 281 CGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCG-TDDKVHFIIRHRNPLNGSITEK 339
CGG Y+KL G +D+ + Y IMFGPD CG KVH I ++
Sbjct: 91 CGGGYVKLFPSGLDQKDMHG---DSEYNIMFGPDICGPGTKKVHVIFNYKG--------- 138
Query: 340 HHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
+ I + +E HLYTL++ PDN Y V IDN G L D+ F PP K+I
Sbjct: 139 KNVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP----KKI 194
Query: 400 VDVNDKKPATWDEREKIPDPEVTKPEDWDE 429
D + KP WDER KI DP +KPEDWD+
Sbjct: 195 KDPDAAKPEDWDERAKIDDPTDSKPEDWDK 224
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 75 GKWSPPMINNPNYNGKWAPRMIPNPEYYHDAE--PFKLFPIVSTLQEQVEKKNRIFSRYL 132
G+W P I+NP+Y G W I NPEY DA + F ++ QV K IF +L
Sbjct: 229 GEWKPRQIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGLDLWQV-KSGTIFDNFL 287
Query: 133 SPKIQKY 139
+ Y
Sbjct: 288 ITNDEAY 294
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 61 GPWTVPLIKNPKFKGKWSPPMINNPNYN 88
G W I NP +KG W P I+NP Y+
Sbjct: 229 GEWKPRQIDNPDYKGTWIHPEIDNPEYS 256
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain
Length = 273
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 81/173 (46%), Gaps = 15/173 (8%)
Query: 222 LGQWSIEPLKLHP-LVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHD 280
G++ + K + L D GL A+ +A+SA + PF V+Q+ V + D
Sbjct: 32 FGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKFE-PFSNKGQTLVVQFTVKHEQNID 90
Query: 281 CGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCG-TDDKVHFIIRHRNPLNGSITEK 339
CGG Y+KL G +D+ + Y IMFGPD CG KVH I ++
Sbjct: 91 CGGGYVKLFPSGLDQKDMHG---DSEYNIMFGPDICGPGTKKVHVIFNYKGK-------- 139
Query: 340 HHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPP 392
+ I + +E HLYTL++ PDN Y V IDN G L D+ F PP
Sbjct: 140 -NVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP 191
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POS|B Chain B, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POS|C Chain C, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POW|A Chain A, Crystal Structure Of The Globular Domain Of Human
Calreticulin
Length = 265
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 75/160 (46%), Gaps = 14/160 (8%)
Query: 238 DSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQD 297
D GL A+ +A+SA+ + PF V+Q+ V + DCGG Y+KL P D
Sbjct: 54 DKGLQTSQDARFYALSASFE-PFSNKGQTLVVQFTVKHEQNIDCGGGYVKLF---PNSLD 109
Query: 298 LTAFNDKTPYTIMFGPDKCG-TDDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESP 356
T + + Y IMFGPD CG KVH I ++ + I + +E
Sbjct: 110 QTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGK---------NVLINKDIRCKDDEFT 160
Query: 357 HLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPP 396
HLYTL++ PDN Y V IDN G L D+ F P P
Sbjct: 161 HLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPGSGDP 200
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By
Calreticulin
pdb|3O0X|A Chain A, Structural Basis Of Carbohydrate Recognition By
Calreticulin
pdb|3O0X|B Chain B, Structural Basis Of Carbohydrate Recognition By
Calreticulin
Length = 273
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 79/173 (45%), Gaps = 15/173 (8%)
Query: 222 LGQWSIEPLKLHP-LVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHD 280
G++ + K + L D GL A+ +A+SA + PF V+Q+ V + D
Sbjct: 32 FGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKFE-PFSNKGQTLVVQFTVKHEQNID 90
Query: 281 CGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCG-TDDKVHFIIRHRNPLNGSITEK 339
CGG Y+KL G +D + Y I FGPD CG KVH I ++
Sbjct: 91 CGGGYVKLFPSGLDQKDXHG---DSEYNIXFGPDICGPGTKKVHVIFNYKGK-------- 139
Query: 340 HHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPP 392
+ I + +E HLYTL++ PDN Y V IDN G L D+ F PP
Sbjct: 140 -NVLINKDIRSKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPP 191
>pdb|1HHN|A Chain A, Calreticulin P-Domain
Length = 101
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 19/69 (27%)
Query: 37 DKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMI 96
D+EMDGEWE P +I+NP++KG+W P I+NP+Y G W I
Sbjct: 50 DEEMDGEWEPP-------------------VIQNPEYKGEWKPRQIDNPDYKGTWIHPEI 90
Query: 97 PNPEYYHDA 105
NPEY DA
Sbjct: 91 DNPEYSPDA 99
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 21/69 (30%)
Query: 397 KEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPD 456
K+I D + KP WDER KI DP +KPEDW D+P+ IPD
Sbjct: 2 KKIKDPDAAKPEDWDERAKIDDPTDSKPEDW---------------------DKPEHIPD 40
Query: 457 PSAVKPADW 465
P A KP DW
Sbjct: 41 PDAKKPEDW 49
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 399 IVDVNDKKPATWDEREKIPDPEVTKPEDWDE 429
I D D KP WD+ E IPDP+ KPEDWDE
Sbjct: 21 IDDPTDSKPEDWDKPEHIPDPDAKKPEDWDE 51
>pdb|1K9C|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain
(Residues 189-261)
Length = 74
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 21/69 (30%)
Query: 397 KEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPD 456
K+I D + KP WDER KI DP +KPEDW D+P+ IPD
Sbjct: 2 KKIKDPDAAKPEDWDERAKIDDPTDSKPEDW---------------------DKPEHIPD 40
Query: 457 PSAVKPADW 465
P A KP DW
Sbjct: 41 PDAKKPEDW 49
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 399 IVDVNDKKPATWDEREKIPDPEVTKPEDWDE 429
I D D KP WD+ E IPDP+ KPEDWDE
Sbjct: 21 IDDPTDSKPEDWDKPEHIPDPDAKKPEDWDE 51
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 72 KFKGKWSPPMINNPNYNGKWAPR 94
+ G+W PP+I NP Y G+W PR
Sbjct: 52 EMDGEWEPPVIQNPEYKGEWKPR 74
>pdb|3ICI|C Chain C, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 38
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 449 DEPKLIPDPSAVKPADW 465
DEPK IPDP+A KP DW
Sbjct: 5 DEPKFIPDPNAEKPDDW 21
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 38 KEMDGEWEAPQIENP 52
++MDGEWEAP+I NP
Sbjct: 23 EDMDGEWEAPRISNP 37
>pdb|3PPL|A Chain A, Crystal Structure Of An Aspartate Transaminase (Ncgl0237,
Cgl0240) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.25 A Resolution
pdb|3PPL|B Chain B, Crystal Structure Of An Aspartate Transaminase (Ncgl0237,
Cgl0240) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.25 A Resolution
Length = 427
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 67 LIKNPKFKGKWSPPMINNPN 86
L+KNP+ KG W P+ +NP
Sbjct: 175 LVKNPQVKGXWVVPVFSNPT 194
>pdb|1K91|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain
(Residues 221-256)
Length = 37
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 37 DKEMDGEWEAPQIENP 52
D+EMDGEWE P I+NP
Sbjct: 18 DEEMDGEWEPPVIQNP 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,552,616
Number of Sequences: 62578
Number of extensions: 784432
Number of successful extensions: 1834
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1743
Number of HSP's gapped (non-prelim): 55
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)