Query psy7421
Match_columns 465
No_of_seqs 274 out of 703
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 17:50:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00262 Calreticulin: Calreti 100.0 7.2E-97 2E-101 752.9 12.7 240 219-465 29-270 (367)
2 KOG0675|consensus 100.0 8.2E-91 1.8E-95 720.5 20.7 246 218-465 70-316 (558)
3 KOG0674|consensus 100.0 9.5E-80 2.1E-84 610.0 18.9 221 221-460 46-273 (406)
4 KOG0675|consensus 100.0 4.3E-54 9.2E-59 447.0 9.8 167 34-219 314-480 (558)
5 PF00262 Calreticulin: Calreti 100.0 9.6E-42 2.1E-46 348.6 4.0 109 25-152 257-367 (367)
6 KOG0674|consensus 100.0 8.7E-31 1.9E-35 261.3 9.3 127 26-170 208-351 (406)
7 PF12273 RCR: Chitin synthesis 83.5 0.54 1.2E-05 42.1 1.2 22 195-216 2-23 (130)
8 PF07210 DUF1416: Protein of u 57.7 13 0.00029 31.9 3.5 40 264-305 5-44 (85)
9 PF15086 UPF0542: Uncharacteri 48.1 16 0.00036 30.6 2.5 36 178-213 5-40 (74)
10 PF10262 Rdx: Rdx family; Int 43.8 40 0.00086 27.4 4.2 24 359-382 35-58 (76)
11 KOG3285|consensus 41.2 11 0.00023 36.8 0.5 25 420-444 160-184 (203)
12 PF12273 RCR: Chitin synthesis 40.7 18 0.00039 32.4 1.9 36 192-227 2-41 (130)
13 KOG3285|consensus 34.3 17 0.00037 35.4 0.7 25 436-460 157-181 (203)
14 PF12606 RELT: Tumour necrosis 32.4 39 0.00085 26.4 2.3 26 198-223 6-31 (50)
15 PF07691 PA14: PA14 domain; I 32.1 81 0.0018 27.3 4.6 27 356-382 59-85 (145)
16 COG5035 CDC50 Cell cycle contr 30.9 34 0.00075 36.0 2.3 25 189-213 327-351 (372)
17 PF01102 Glycophorin_A: Glycop 27.2 25 0.00054 32.1 0.5 26 195-220 68-94 (122)
18 PF01034 Syndecan: Syndecan do 24.6 17 0.00037 29.8 -0.9 26 206-231 25-50 (64)
19 PF04478 Mid2: Mid2 like cell 24.0 47 0.001 31.6 1.7 11 211-221 72-82 (154)
20 PRK10132 hypothetical protein; 21.1 75 0.0016 28.3 2.3 29 180-208 74-102 (108)
21 cd00413 Glyco_hydrolase_16 gly 20.5 1.5E+02 0.0033 27.6 4.4 30 353-383 141-170 (210)
No 1
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=7.2e-97 Score=752.86 Aligned_cols=240 Identities=58% Similarity=1.044 Sum_probs=192.2
Q ss_pred CCccceEEeccCCCC-CCCCCcceeeCCccchhhhhccCCCccccCCCceEEEEEEEeecccccccceEEEccCCCCcCC
Q psy7421 219 KDWLGQWSIEPLKLH-PLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQD 297 (465)
Q Consensus 219 Kky~GkW~~~~~~~~-~~~~DkGLv~~~~ak~yaISa~l~kPf~~~~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~~~d 297 (465)
.+|.|+|++++++.+ +.++|+||||+++|||||||++|++||++++|+||||||||||++|+|||||||||+++ .+
T Consensus 29 ~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVvQYeVK~q~~idCGGaYIKLL~~~---~~ 105 (367)
T PF00262_consen 29 AKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVVQYEVKFQQGIDCGGAYIKLLPAS---FD 105 (367)
T ss_dssp -----EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEEEEEEEETT--SEEE--EEEEBTT---SS
T ss_pred ccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEEEEEEEeecceeccceEEEEecCc---cc
Confidence 468999999999776 88899999999999999999999999999999999999999999999999999999986 45
Q ss_pred cc-cCCCCCCceEeeccCCcCCCCeEEEEEeecCCCCCcccccccccCCCCccccCCCCceeEEEEEecCCeEEEEEccE
Q psy7421 298 LT-AFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNE 376 (465)
Q Consensus 298 ~~-~f~~~TpY~IMFGPD~CG~~~kvHfI~~~knp~~~~~eek~~~~~~~~l~~~~D~~tHLYTLIi~pdnTyeI~IDg~ 376 (465)
+. +|+++|||+||||||+||+++||||||||+||++++++|+|+++++ +++.+|++||||||||||||||||||||+
T Consensus 106 ~~~~f~~~TpY~IMFGPD~CG~~~kvHfI~~~~nP~~~~~~e~~l~~~p--~~~~~D~~tHlYTLii~~dntyeI~IDg~ 183 (367)
T PF00262_consen 106 QEENFSDKTPYSIMFGPDKCGSSNKVHFIFRHKNPITGEIEEKHLKKPP--ISCFTDKLTHLYTLIIRPDNTYEIRIDGE 183 (367)
T ss_dssp GGGG-STTS-ESEEEEEEEESTTEEEEEEEEEE-TTTEETTEEEE-SSS--SB-HHSSSEEEEEEEEETTTEEEEEETTE
T ss_pred hhhhcCCCCCceEEeCCccCCCCceEEEEEEecCCCCCcccceecccCC--cccccCCCcceEEEEEcCCCeEEEEECCE
Confidence 55 9999999999999999999999999999999999999999999875 45689999999999999999999999999
Q ss_pred EEEeeccccCCCCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCC
Q psy7421 377 LNIEGHLLDEGTFNPPINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPD 456 (465)
Q Consensus 377 ~v~~GsL~~d~~f~P~~~pPk~I~DP~d~KP~DWdD~~~I~DP~~~KPeDWDE~~P~~IpDp~a~KP~dW~d~ep~~Ipd 456 (465)
++.+|||++| |+|||+|||+|+||+|+||+|||||++|+||+|+|||||||++|++|+||+|+||++|+|+||+||||
T Consensus 184 ~~~~G~L~~d--f~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~p~~I~D~~a~kP~~W~edep~~IpD 261 (367)
T PF00262_consen 184 VVKSGSLLED--FDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDEPEFIPDPDAVKPEGWLEDEPEYIPD 261 (367)
T ss_dssp EEEEEEHHHH--SE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS--SEEE-TT----SS-BSSS-SEEE-
T ss_pred Eeeccccccc--cccCcCChhcccCccccCCcchhhhcccCCccccCcccccccCcccccCccccCCcchhhCCCcccCC
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy7421 457 PSAVKPADW 465 (465)
Q Consensus 457 P~~~kP~dW 465 (465)
|+|+||+||
T Consensus 262 p~a~kP~dW 270 (367)
T PF00262_consen 262 PEAKKPEDW 270 (367)
T ss_dssp TT--S-TT-
T ss_pred CCCCCCCCC
Confidence 999999999
No 2
>KOG0675|consensus
Probab=100.00 E-value=8.2e-91 Score=720.48 Aligned_cols=246 Identities=57% Similarity=1.059 Sum_probs=239.9
Q ss_pred CCCccceEEeccCCCCCCCCCcceeeCCccchhhhhccCCCccccCCCceEEEEEEEeecccccccceEEEccCCCCcCC
Q psy7421 218 SKDWLGQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQD 297 (465)
Q Consensus 218 sKky~GkW~~~~~~~~~~~~DkGLv~~~~ak~yaISa~l~kPf~~~~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~~~d 297 (465)
..+|+|+|.++++...+.++|+||++++.|||||||+.|++||++..++||||||||+|+|++|||||||||+......+
T Consensus 70 i~kY~G~W~~ee~~~~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plVVQYEvk~qeg~eCGGAYlKLLs~~~~~~~ 149 (558)
T KOG0675|consen 70 IAKYDGVWDLEEPPKSHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLVVQYEVKFQEGLECGGAYLKLLSQGTAGEN 149 (558)
T ss_pred hhhccceeeeccCccccCCcccceEeeccchhhHHHhhhcCCcccCCCCeEEEEEEecCCCcccchhHHHhhcccccccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999998446789
Q ss_pred cccCCCCCCceEeeccCCcCCCCeEEEEEeecCCCCCcccccccccCCCCc-cccCCCCceeEEEEEecCCeEEEEEccE
Q psy7421 298 LTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHKAIKPSV-NLYSNESPHLYTLVLYPDNKYAVYIDNE 376 (465)
Q Consensus 298 ~~~f~~~TpY~IMFGPD~CG~~~kvHfI~~~knp~~~~~eek~~~~~~~~l-~~~~D~~tHLYTLIi~pdnTyeI~IDg~ 376 (465)
+++|+++|||+||||||+||.++||||||||+||+||+++|||++.|++++ ..++|++||||||||+|||||+|||||+
T Consensus 150 l~~f~dktpy~ImFGPDKCG~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l~~~~~d~~tHLYTLvl~pd~sfeI~vDg~ 229 (558)
T KOG0675|consen 150 LKNFDDKTPYTIMFGPDKCGETNKVHFIFRHKNPITGEISEKHLKAPPSSLKKPFDDKLTHLYTLVLKPDNTFEIRVDGK 229 (558)
T ss_pred hhccCCCCCeEEEeCccccCCcccEEEEEeeccCCCCeeehhhccCCCcccccccccCCceeEEEEecCCCeEEEEecCc
Confidence 999999999999999999999999999999999999999999999999877 6788999999999999999999999999
Q ss_pred EEEeeccccCCCCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCC
Q psy7421 377 LNIEGHLLDEGTFNPPINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPD 456 (465)
Q Consensus 377 ~v~~GsL~~d~~f~P~~~pPk~I~DP~d~KP~DWdD~~~I~DP~~~KPeDWDE~~P~~IpDp~a~KP~dW~d~ep~~Ipd 456 (465)
+|+.|||++| |.||++||++|+||+|.||+|||+|++||||+|+||+||||++|.+|||++|+||++|+|+||.||+|
T Consensus 230 vv~~G~ll~D--f~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~D 307 (558)
T KOG0675|consen 230 VVYKGSLLTD--FEPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPD 307 (558)
T ss_pred EEEecccccc--cCCCCCCccccCCcccCCccchhhhhcCCCcccCCccccCcCCCccCCCccccCCccccccCCcccCC
Confidence 9999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy7421 457 PSAVKPADW 465 (465)
Q Consensus 457 P~~~kP~dW 465 (465)
|+|+||+||
T Consensus 308 P~A~KPedW 316 (558)
T KOG0675|consen 308 PEAQKPEDW 316 (558)
T ss_pred cccCCCCCC
Confidence 999999999
No 3
>KOG0674|consensus
Probab=100.00 E-value=9.5e-80 Score=610.03 Aligned_cols=221 Identities=41% Similarity=0.723 Sum_probs=209.8
Q ss_pred ccceEEeccCCCCCCCC-CcceeeCCccchhhhhccCCCccccCCCceEEEEEEEeecccccccceEEEccCCCCcCCcc
Q psy7421 221 WLGQWSIEPLKLHPLVG-DSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLT 299 (465)
Q Consensus 221 y~GkW~~~~~~~~~~~~-DkGLv~~~~ak~yaISa~l~kPf~~~~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~~~d~~ 299 (465)
--|+|++++|++++.++ |+||+|++++||||||++|+ ||+|++|+|||||+|||+|+|+|||||||||++. +||.
T Consensus 46 ~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~sa~F~-~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~~d---~Dq~ 121 (406)
T KOG0674|consen 46 DFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAISAKFK-PFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFPAD---LDQT 121 (406)
T ss_pred ccCceEeccccccCcccccccccccccceeeeeecccc-cccccCceEEEEEEecccccccCCceeEEeeecc---cchh
Confidence 55999999999999988 99999999999999999995 7999999999999999999999999999999875 8999
Q ss_pred cCCCCCCceEeeccCCcCC-CCeEEEEEeecCCCCCcccccccccCCCCccccCCCCceeEEEEEecCCeEEEEEccEEE
Q psy7421 300 AFNDKTPYTIMFGPDKCGT-DDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELN 378 (465)
Q Consensus 300 ~f~~~TpY~IMFGPD~CG~-~~kvHfI~~~knp~~~~~eek~~~~~~~~l~~~~D~~tHLYTLIi~pdnTyeI~IDg~~v 378 (465)
+|+++|||.||||||+||+ ++|||+||+|++. +|+.+ +.|+|++|++|||||||||||+||+|+|||+.+
T Consensus 122 ~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~-------nhlik--K~i~Ck~D~~tHlYTlIlRPd~TYeVkIDn~~~ 192 (406)
T KOG0674|consen 122 DFHGESPYNIMFGPDICGFGTKKVHVILNYKGK-------NHLIK--KDIRCKDDELTHLYTLILRPDATYEVKIDNQQV 192 (406)
T ss_pred hcCCCcccccccCCcccCCCCceEEEEEecccc-------cchhc--cccccccCCcceeEEEEecCCCeeEEEEccccc
Confidence 9999999999999999998 5799999999883 36654 568999999999999999999999999999999
Q ss_pred EeeccccCCCCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC-----CCC
Q psy7421 379 IEGHLLDEGTFNPPINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDE-----PKL 453 (465)
Q Consensus 379 ~~GsL~~d~~f~P~~~pPk~I~DP~d~KP~DWdD~~~I~DP~~~KPeDWDE~~P~~IpDp~a~KP~dW~d~e-----p~~ 453 (465)
.+|||++||+ |+|||.|.||.++||+|||+|+.|+||+|+||+||+ .|++||||+|+||+||++++ +||
T Consensus 193 esGsle~DWd----ll~~KKikdP~a~KPedWDer~~I~DpeD~Kp~dwe--~pehipDpdakKpedWddemDGEWe~P~ 266 (406)
T KOG0674|consen 193 ESGSLEDDWD----LLPPKKIKDPDAKKPEDWDEREYIPDPEDKKPQDWE--KPEHIPDPDAKKPEDWDDEMDGEWEAPM 266 (406)
T ss_pred ccCccccccc----cccccccCCccccCcccchhhccCCCccccCccccc--cccccCCcccCCcccccccccCCcCCCC
Confidence 9999999988 599999999999999999999999999999999998 79999999999999999984 999
Q ss_pred CCCCCCC
Q psy7421 454 IPDPSAV 460 (465)
Q Consensus 454 IpdP~~~ 460 (465)
||||+|+
T Consensus 267 i~nPey~ 273 (406)
T KOG0674|consen 267 IPNPEYK 273 (406)
T ss_pred CCCcccc
Confidence 9999987
No 4
>KOG0675|consensus
Probab=100.00 E-value=4.3e-54 Score=447.02 Aligned_cols=167 Identities=44% Similarity=0.874 Sum_probs=160.2
Q ss_pred cCCCCCCCCCccCCCCCCCcccCCCCCCCCCCCccCCCCCCcCCCCCccCCCCCCCCCcCCcCCCCCCCCCCCCCccCCc
Q psy7421 34 RTNDKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYHDAEPFKLFPI 113 (465)
Q Consensus 34 ~~wd~e~dGeWe~p~i~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp~I~NP~YkG~W~prkI~NP~y~ed~~p~~~~~i 113 (465)
.+||+|+|||||||+|.||+|..++|||+|+||||+||+|||+|.+|||+||||+|+|+||+|+||+|||+.+|+.+.+|
T Consensus 314 edWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pI 393 (558)
T KOG0675|consen 314 EDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILPMIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPI 393 (558)
T ss_pred CCCCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCccccccCccccCccccccCCCcccccccCcccccch
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeeeehhhhhhcccCccceeeccccceeeeeEEecCCHHHHHHHHHHHhHhhhhcccCchHHHHHHhhhhcCCce
Q psy7421 114 VSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAKQFAEATFKQKLSKRTNDKSFVSMVMKYTQENPW 193 (465)
Q Consensus 114 ~~~g~e~v~~~~~i~~~~~~~~ie~w~~~~~~~FDNilItdd~~~A~~~~~~t~~~k~~~~~~~~~~~~~~~~~a~enPw 193 (465)
.|+|+ |+|+|+++|+|||||||+|+++|+.+|+.||..|+...++.+ +++++|++|+.+||
T Consensus 394 savgl------------------ElWsMs~~IlfdNi~i~~~~e~a~~~~~~tw~~K~~~~~e~~-~~~~~~~~~~~~~~ 454 (558)
T KOG0675|consen 394 SAVGL------------------ELWSMSSNILFDNIIITKDIEVAEDIANFTWLLKAAAEREKP-FVQQVMEAAEGHPW 454 (558)
T ss_pred hhhhh------------------hhhhcCCCceeceeEEeccHHHHHHhhhhceeeehhhcccch-HHHHHHhhccccch
Confidence 99985 689999999999999999999999999999999988888777 99999999999999
Q ss_pred eeehhHHHHHHHHHHHhhhhccCCCC
Q psy7421 194 LWAVYVIVTGVFVVLFYVLCCSGASK 219 (465)
Q Consensus 194 lwiVyil~v~LpVvL~~lfCcsgksK 219 (465)
||++|+++++++|+++..|||+++++
T Consensus 455 ~w~~~i~~~~~~v~~i~~~c~~~k~k 480 (558)
T KOG0675|consen 455 LWAIYILTLLLPVADITKFCAPVKSK 480 (558)
T ss_pred HHHHHHHHhhhhHhhhhhcccccccc
Confidence 99999999999999999999996554
No 5
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=9.6e-42 Score=348.57 Aligned_cols=109 Identities=50% Similarity=1.051 Sum_probs=66.4
Q ss_pred HhhcccccCc--CCCCCCCCCccCCCCCCCcccCCCCCCCCCCCccCCCCCCcCCCCCccCCCCCCCCCcCCcCCCCCCC
Q psy7421 25 ATFKQKLSKR--TNDKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYY 102 (465)
Q Consensus 25 ~~~~~~~~~~--~wd~e~dGeWe~p~i~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp~I~NP~YkG~W~prkI~NP~y~ 102 (465)
++.-||.+++ +||+|+||||+||+|+||+|.. +|||+|+||||.||+|||+|+||||+||||||+|+||+|+||+||
T Consensus 257 ~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~-~gCG~w~~p~i~Np~YkG~W~pp~I~NP~YkG~W~p~~I~NP~y~ 335 (367)
T PF00262_consen 257 EYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKE-PGCGEWKPPMIKNPNYKGKWKPPMIPNPNYKGEWKPRKIPNPDYF 335 (367)
T ss_dssp SEEE-TT--S-TT--CCCCSS----EEE-CGGTT-S-BSS----EEE-TT--SS----EEE-TT---S----EEE-TT--
T ss_pred cccCCCCCCCCCCCCccccCCccCCccCCCcccC-CCccccccccccCccccCCccccccCCccccccccccccCCCccc
Confidence 3445666654 7999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCCceeeeeeeeeehhhhhhcccCccceeeccccceeeeeEEe
Q psy7421 103 HDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIII 152 (465)
Q Consensus 103 ed~~p~~~~~i~~~g~e~v~~~~~i~~~~~~~~ie~w~~~~~~~FDNilI 152 (465)
+|.+|+++.+|+|||| |||||++|++||||||
T Consensus 336 ~d~~p~~~~~i~~ig~------------------ElW~~~~~~~FDNi~i 367 (367)
T PF00262_consen 336 EDPNPYNFEPIGAIGF------------------ELWQMSSGIIFDNILI 367 (367)
T ss_dssp SSTTTT--S-EEEEEE------------------EEEESSS-EEEEEEEE
T ss_pred CCCCccccCceeEEEE------------------EEEeccCCceeeeEEC
Confidence 9999999999999985 6899999999999998
No 6
>KOG0674|consensus
Probab=99.97 E-value=8.7e-31 Score=261.26 Aligned_cols=127 Identities=34% Similarity=0.611 Sum_probs=114.3
Q ss_pred hhcccccCc--CCCCC------CC---CCcc------CCCCCCCcccCCCCCCCCCCCccCCCCCCcCCCCCccCCCCCC
Q psy7421 26 TFKQKLSKR--TNDKE------MD---GEWE------APQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYN 88 (465)
Q Consensus 26 ~~~~~~~~~--~wd~e------~d---GeWe------~p~i~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp~I~NP~Yk 88 (465)
..|+|.++. +||+- +| -.|+ .|....|..++...+|+|+||||+||.|||.|+|++|+||+||
T Consensus 208 KikdP~a~KPedWDer~~I~DpeD~Kp~dwe~pehipDpdakKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yK 287 (406)
T KOG0674|consen 208 KIKDPDAKKPEDWDEREYIPDPEDKKPQDWEKPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYK 287 (406)
T ss_pred ccCCccccCcccchhhccCCCccccCccccccccccCCcccCCcccccccccCCcCCCCCCCccccCccCcccccCcccc
Confidence 468898888 89876 22 3477 4556667778999999999999999999999999999999999
Q ss_pred CCCcCCcCCCCCCCCCCCCCccCCceeeeeeeeeehhhhhhcccCccceeeccccceeeeeEEecCCHHHHHHHHHHHhH
Q psy7421 89 GKWAPRMIPNPEYYHDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAKQFAEATFK 168 (465)
Q Consensus 89 G~W~prkI~NP~y~ed~~p~~~~~i~~~g~e~v~~~~~i~~~~~~~~ie~w~~~~~~~FDNilItdd~~~A~~~~~~t~~ 168 (465)
|.|.+++|.||+|-.|.++|.+.+|+++|| |||||+||+||||||||||+++|+.+|++||+
T Consensus 288 g~w~hp~i~npey~~d~~ly~~~ni~~lgl------------------dLWQVKSgtIFDN~LitdD~eyA~k~~~eTwg 349 (406)
T KOG0674|consen 288 GKWIHPEIDNPEYPDDPELYHYENIGVLGL------------------DLWQVKSGTIFDNFLITDDEEYAEKFANETWG 349 (406)
T ss_pred ceeeccccCCCcCCCCcceeeecccceeee------------------eEEEeecceeecceEecCCHHHHHHHHHhhhc
Confidence 999999999999999999999999998875 68999999999999999999999999999999
Q ss_pred hh
Q psy7421 169 QK 170 (465)
Q Consensus 169 ~k 170 (465)
+.
T Consensus 350 ~~ 351 (406)
T KOG0674|consen 350 KT 351 (406)
T ss_pred cc
Confidence 44
No 7
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=83.47 E-value=0.54 Score=42.14 Aligned_cols=22 Identities=14% Similarity=0.807 Sum_probs=12.0
Q ss_pred eehhHHHHHHHHHHHhhhhccC
Q psy7421 195 WAVYVIVTGVFVVLFYVLCCSG 216 (465)
Q Consensus 195 wiVyil~v~LpVvL~~lfCcsg 216 (465)
|++++++|++.+++++++||.+
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555543
No 8
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=57.65 E-value=13 Score=31.95 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=30.6
Q ss_pred CCceEEEEEEEeecccccccceEEEccCCCCcCCcccCCCCC
Q psy7421 264 KVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKT 305 (465)
Q Consensus 264 ~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~~~d~~~f~~~T 305 (465)
.|..|||=.|+ ..+--.||||+.||..+ .++..+-..+.+
T Consensus 5 ~ke~VItG~V~-~~G~Pv~gAyVRLLD~s-gEFtaEvvts~~ 44 (85)
T PF07210_consen 5 EKETVITGRVT-RDGEPVGGAYVRLLDSS-GEFTAEVVTSAT 44 (85)
T ss_pred cceEEEEEEEe-cCCcCCCCeEEEEEcCC-CCeEEEEEecCC
Confidence 57899999999 88888999999999876 455444444433
No 9
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=48.06 E-value=16 Score=30.61 Aligned_cols=36 Identities=11% Similarity=0.335 Sum_probs=29.1
Q ss_pred hHHHHHHhhhhcCCceeeehhHHHHHHHHHHHhhhh
Q psy7421 178 KSFVSMVMKYTQENPWLWAVYVIVTGVFVVLFYVLC 213 (465)
Q Consensus 178 ~~~~~~~~~~a~enPwlwiVyil~v~LpVvL~~lfC 213 (465)
.+.++.++.++..+||=.+.|++.++.|.+++..+|
T Consensus 5 k~w~~~~v~~vAkdP~~Fl~~vll~LtPlfiisa~l 40 (74)
T PF15086_consen 5 KAWASYIVEWVAKDPYEFLTTVLLILTPLFIISAVL 40 (74)
T ss_pred HHHHHHHHHHHHcChHHHHHHHHHHHhHHHHHHHHH
Confidence 467788899999999999999998888876655443
No 10
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=43.75 E-value=40 Score=27.44 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=18.9
Q ss_pred EEEEEecCCeEEEEEccEEEEeec
Q psy7421 359 YTLVLYPDNKYAVYIDNELNIEGH 382 (465)
Q Consensus 359 YTLIi~pdnTyeI~IDg~~v~~Gs 382 (465)
.+|+.-..+.|||.+||+.|.+..
T Consensus 35 v~~~~~~~G~FEV~v~g~lI~SK~ 58 (76)
T PF10262_consen 35 VELSPGSTGAFEVTVNGELIFSKL 58 (76)
T ss_dssp EEEEEESTT-EEEEETTEEEEEHH
T ss_pred EEEEeccCCEEEEEEccEEEEEeh
Confidence 466777899999999999998653
No 11
>KOG3285|consensus
Probab=41.15 E-value=11 Score=36.77 Aligned_cols=25 Identities=36% Similarity=0.621 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCCCccCCCCCCCCC
Q psy7421 420 EVTKPEDWDEDEPYEIEDVEAHKPD 444 (465)
Q Consensus 420 ~~~KPeDWDE~~P~~IpDp~a~KP~ 444 (465)
+..=|++|+|+.|..|.||.+++=.
T Consensus 160 D~~vP~~W~eS~~~~I~n~e~Vqlr 184 (203)
T KOG3285|consen 160 DTEVPEKWDESGPKLIQNPEAVQLR 184 (203)
T ss_pred CccCCcchhcCCCeEecChhhEEEe
Confidence 3444666666666666666655433
No 12
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=40.72 E-value=18 Score=32.42 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=26.8
Q ss_pred ceeeehhHHHHHHHHHHHhhhhccCCCC----CccceEEe
Q psy7421 192 PWLWAVYVIVTGVFVVLFYVLCCSGASK----DWLGQWSI 227 (465)
Q Consensus 192 PwlwiVyil~v~LpVvL~~lfCcsgksK----ky~GkW~~ 227 (465)
-.||+|+|++++|.+++++++..++..+ .+.-.|..
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r~G~~P~~gt~w~~ 41 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRRRGLQPIYGTRWMA 41 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCCceecC
Confidence 4689999999999998888877776543 34455654
No 13
>KOG3285|consensus
Probab=34.30 E-value=17 Score=35.43 Aligned_cols=25 Identities=40% Similarity=0.781 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC
Q psy7421 436 EDVEAHKPDGWLSDEPKLIPDPSAV 460 (465)
Q Consensus 436 pDp~a~KP~dW~d~ep~~IpdP~~~ 460 (465)
-|-|++-|++|.|+.|..|+||+..
T Consensus 157 TdkD~~vP~~W~eS~~~~I~n~e~V 181 (203)
T KOG3285|consen 157 TDKDTEVPEKWDESGPKLIQNPEAV 181 (203)
T ss_pred eCCCccCCcchhcCCCeEecChhhE
Confidence 3566667777777777777777654
No 14
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=32.45 E-value=39 Score=26.37 Aligned_cols=26 Identities=15% Similarity=0.115 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHhhhhccCCCCCccc
Q psy7421 198 YVIVTGVFVVLFYVLCCSGASKDWLG 223 (465)
Q Consensus 198 yil~v~LpVvL~~lfCcsgksKky~G 223 (465)
.+.++.+.++|+++.|--++.+.|..
T Consensus 6 iV~i~iv~~lLg~~I~~~~K~ygYkh 31 (50)
T PF12606_consen 6 IVSIFIVMGLLGLSICTTLKAYGYKH 31 (50)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccc
Confidence 33444455566677776666666654
No 15
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=32.11 E-value=81 Score=27.32 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=23.7
Q ss_pred ceeEEEEEecCCeEEEEEccEEEEeec
Q psy7421 356 PHLYTLVLYPDNKYAVYIDNELNIEGH 382 (465)
Q Consensus 356 tHLYTLIi~pdnTyeI~IDg~~v~~Gs 382 (465)
+-.||+.+..|+.+++.|||+.+....
T Consensus 59 ~G~y~f~~~~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 59 TGTYTFSLTSDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SEEEEEEEEESSEEEEEETTEEEEECS
T ss_pred CceEEEEEEecccEEEEECCEEEEcCC
Confidence 677999999999999999999886544
No 16
>COG5035 CDC50 Cell cycle control protein [Cell division and chromosome partitioning / Transcription / Signal transduction mechanisms]
Probab=30.94 E-value=34 Score=35.99 Aligned_cols=25 Identities=32% Similarity=0.483 Sum_probs=20.4
Q ss_pred cCCceeeehhHHHHHHHHHHHhhhh
Q psy7421 189 QENPWLWAVYVIVTGVFVVLFYVLC 213 (465)
Q Consensus 189 ~enPwlwiVyil~v~LpVvL~~lfC 213 (465)
-.|+.|-|||+++.++++++.++|.
T Consensus 327 gkN~fLGI~ylivg~ical~~~if~ 351 (372)
T COG5035 327 GKNYFLGIVYLIVGGICALLGLIFL 351 (372)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHH
Confidence 3899999999999999887665543
No 17
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.25 E-value=25 Score=32.06 Aligned_cols=26 Identities=19% Similarity=0.493 Sum_probs=12.1
Q ss_pred eehhHHHHHHH-HHHHhhhhccCCCCC
Q psy7421 195 WAVYVIVTGVF-VVLFYVLCCSGASKD 220 (465)
Q Consensus 195 wiVyil~v~Lp-VvL~~lfCcsgksKk 220 (465)
+||+.+++|+. ++|+++||+.+..|+
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444444444 445555666544443
No 18
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=24.59 E-value=17 Score=29.77 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=2.7
Q ss_pred HHHHhhhhccCCCCCccceEEeccCC
Q psy7421 206 VVLFYVLCCSGASKDWLGQWSIEPLK 231 (465)
Q Consensus 206 VvL~~lfCcsgksKky~GkW~~~~~~ 231 (465)
++++++|++-+-.|+-.|...+.+.+
T Consensus 25 ailLIlf~iyR~rkkdEGSY~l~e~K 50 (64)
T PF01034_consen 25 AILLILFLIYRMRKKDEGSYDLDEPK 50 (64)
T ss_dssp ------------S------SS--S--
T ss_pred HHHHHHHHHHHHHhcCCCCccCCCCC
Confidence 34444455555556666777777655
No 19
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=24.04 E-value=47 Score=31.57 Aligned_cols=11 Identities=18% Similarity=0.679 Sum_probs=4.9
Q ss_pred hhhccCCCCCc
Q psy7421 211 VLCCSGASKDW 221 (465)
Q Consensus 211 lfCcsgksKky 221 (465)
+||+.++.++|
T Consensus 72 ~~c~r~kktdf 82 (154)
T PF04478_consen 72 IFCIRRKKTDF 82 (154)
T ss_pred eEEEecccCcc
Confidence 34445444443
No 20
>PRK10132 hypothetical protein; Provisional
Probab=21.13 E-value=75 Score=28.31 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=19.2
Q ss_pred HHHHHhhhhcCCceeeehhHHHHHHHHHH
Q psy7421 180 FVSMVMKYTQENPWLWAVYVIVTGVFVVL 208 (465)
Q Consensus 180 ~~~~~~~~a~enPwlwiVyil~v~LpVvL 208 (465)
.+...-++..+|||--++..+++|+.+.+
T Consensus 74 a~~~~~~~V~~~Pw~svgiaagvG~llG~ 102 (108)
T PRK10132 74 AVGCADTFVRERPWCSVGTAAAVGIFIGA 102 (108)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 44555567789999877666655555443
No 21
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=20.54 E-value=1.5e+02 Score=27.56 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=24.8
Q ss_pred CCCceeEEEEEecCCeEEEEEccEEEEeecc
Q psy7421 353 NESPHLYTLVLYPDNKYAVYIDNELNIEGHL 383 (465)
Q Consensus 353 D~~tHLYTLIi~pdnTyeI~IDg~~v~~GsL 383 (465)
..-=|.|++...| +....+|||+.+.+-+.
T Consensus 141 ~~~~H~Y~~~W~~-~~i~~yvDG~~~~~~~~ 170 (210)
T cd00413 141 ADDFHTYRVDWTP-GEITFYVDGVLVATITN 170 (210)
T ss_pred ccCeEEEEEEEeC-CEEEEEECCEEEEEECC
Confidence 4456999999998 78999999999987543
Done!