Query psy7421
Match_columns 465
No_of_seqs 274 out of 703
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 17:50:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jhn_A Calnexin; jelly-roll, b 100.0 1.7E-96 6E-101 755.3 20.8 243 220-465 56-299 (424)
2 3rg0_A Calreticulin; beta-sand 100.0 8.2E-80 2.8E-84 615.6 16.6 223 216-460 26-256 (332)
3 3pow_A Calreticulin; legume le 100.0 1.7E-64 5.8E-69 494.5 14.5 164 216-392 31-196 (265)
4 1jhn_A Calnexin; jelly-roll, b 100.0 9.6E-44 3.3E-48 365.2 10.0 131 26-174 287-419 (424)
5 3rg0_A Calreticulin; beta-sand 100.0 9.5E-32 3.3E-36 269.2 7.9 137 5-174 170-310 (332)
6 1hhn_A Calreticulin; molecular 99.9 1.5E-23 5.1E-28 179.5 2.7 62 46-107 35-101 (101)
7 1hhn_A Calreticulin; molecular 99.8 5.2E-20 1.8E-24 157.6 3.8 63 396-460 1-68 (101)
8 3pow_A Calreticulin; legume le 99.1 6.8E-11 2.3E-15 116.2 5.4 55 102-174 197-251 (265)
9 3ici_C Calnexin, PP90; protein 98.7 8.1E-09 2.8E-13 74.0 3.0 29 430-458 5-38 (38)
10 3ici_C Calnexin, PP90; protein 97.8 1.3E-05 4.3E-10 57.5 3.3 19 35-53 20-38 (38)
11 4b1m_A Levanase; hydrolase, CB 50.9 1.2E+02 0.0041 27.1 10.5 122 221-381 36-157 (185)
12 2kbg_A N-CAM 2, neural cell ad 31.0 65 0.0022 26.8 5.0 62 303-374 20-82 (114)
13 2quo_A Heat-labIle enterotoxin 30.9 36 0.0012 28.9 3.3 34 273-312 79-124 (126)
14 2oka_A Hypothetical protein; P 27.4 62 0.0021 27.5 4.2 24 359-382 40-63 (104)
15 2p0g_A Selenoprotein W-related 26.9 64 0.0022 27.4 4.2 25 358-382 37-61 (105)
16 2ojl_A Hypothetical protein; B 25.1 72 0.0024 27.3 4.2 25 358-382 42-66 (108)
17 3dex_A SAV_2001; alpha-beta pr 23.4 79 0.0027 27.1 4.2 32 350-382 39-70 (107)
18 2fa8_A Hypothetical protein AT 21.6 93 0.0032 26.4 4.2 24 359-382 42-65 (105)
No 1
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1
Probab=100.00 E-value=1.7e-96 Score=755.34 Aligned_cols=243 Identities=53% Similarity=1.043 Sum_probs=228.9
Q ss_pred CccceEEeccCCCCCCCCCcceeeCCccchhhhhccCCCccccCCCceEEEEEEEeecccccccceEEEccCCCCcCCcc
Q psy7421 220 DWLGQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLT 299 (465)
Q Consensus 220 ky~GkW~~~~~~~~~~~~DkGLv~~~~ak~yaISa~l~kPf~~~~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~~~d~~ 299 (465)
+|.|+|+++++++++.++|+||||+++|||||||++|++||+|++|+||||||||||++|+|||||||||+.+ .+++++
T Consensus 56 ~y~G~w~~~~~~~~~~~~DkGL~~~~~ar~yaISa~~~kpf~~~~k~LVvQYeVk~q~~idCGGaYiKLl~~~-~~~d~~ 134 (424)
T 1jhn_A 56 KYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKT-PELNLD 134 (424)
T ss_dssp --CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEECSSSSCEEEEEEECCTTCCSEEECCEEEEBCC-SSCCGG
T ss_pred cCCeEEEEecCccCCCccccceeeccchhHHHHHHhhcCccccCCCCEEEEEEEEecccccccceEEEeecCc-ccCCHh
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999975 568999
Q ss_pred cCCCCCCceEeeccCCcCCCCeEEEEEeecCCCCCcccccccccCCCCc-cccCCCCceeEEEEEecCCeEEEEEccEEE
Q psy7421 300 AFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHKAIKPSV-NLYSNESPHLYTLVLYPDNKYAVYIDNELN 378 (465)
Q Consensus 300 ~f~~~TpY~IMFGPD~CG~~~kvHfI~~~knp~~~~~eek~~~~~~~~l-~~~~D~~tHLYTLIi~pdnTyeI~IDg~~v 378 (465)
+|+++|||+||||||+||.++||||||||+||+||+++|||++++..++ +|++|++||||||||||||||||+|||++|
T Consensus 135 ~f~~~TpY~IMFGPD~CG~~~kvH~I~~~knp~~g~~~ekh~~~~~~~~~~~~~D~~tHlYTLIl~pdntyei~ID~~~v 214 (424)
T 1jhn_A 135 QFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIV 214 (424)
T ss_dssp GCCSSCCEEEEEEEEEESSCCEEEEEEEEECTTTCCEEEECCCCCSSCCTHHHHSCSCEEEEEEEETTTEEEEEETTEEE
T ss_pred HcCCCCCceEeccCCccCCCCeEEEEEecCCCCCCchhhhcccCCcccccccccCCCceEEEEEEcCCCcEEEEECCcee
Confidence 9999999999999999999999999999999999999999999887766 688999999999999999999999999999
Q ss_pred EeeccccCCCCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCC
Q psy7421 379 IEGHLLDEGTFNPPINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPS 458 (465)
Q Consensus 379 ~~GsL~~d~~f~P~~~pPk~I~DP~d~KP~DWdD~~~I~DP~~~KPeDWDE~~P~~IpDp~a~KP~dW~d~ep~~IpdP~ 458 (465)
.+|||++| |+|||+||++|+||+|+||+|||||++|+||+|+||+||||++|++|+||+|+||+||+|+||+||+||+
T Consensus 215 ~~GsL~~D--~~Pp~~pp~~I~Dp~~~KP~DWde~~~I~Dp~a~KPeDWde~~p~~I~Dp~A~KPedWdd~ep~~I~DP~ 292 (424)
T 1jhn_A 215 NSGNLLND--MTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPD 292 (424)
T ss_dssp EEEC---------CCSSCCCCBCTTCCCCTTCCCCSEEECSSCCCCTTCCSSCCSEEECTTCCCCSSCBSSSCSCCBCTT
T ss_pred cccccHHh--ccccCCCcccccCccccCccccccccccCCcccCCccccccCCccccCCccccCCCCccccccccCCCcc
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy7421 459 AVKPADW 465 (465)
Q Consensus 459 ~~kP~dW 465 (465)
++||+||
T Consensus 293 a~KPedW 299 (424)
T 1jhn_A 293 AEKPEDW 299 (424)
T ss_dssp CCCCTTC
T ss_pred cCCcccc
Confidence 9999999
No 2
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus}
Probab=100.00 E-value=8.2e-80 Score=615.60 Aligned_cols=223 Identities=36% Similarity=0.627 Sum_probs=179.9
Q ss_pred CCCCCccceEEeccCCCCCC-CCCcceeeCCccchhhhhccCCCccccCCCceEEEEEEEeecccccccceEEEccCCCC
Q psy7421 216 GASKDWLGQWSIEPLKLHPL-VGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPA 294 (465)
Q Consensus 216 gksKky~GkW~~~~~~~~~~-~~DkGLv~~~~ak~yaISa~l~kPf~~~~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~ 294 (465)
|+.++..|+|++++|++++. ++|+||||+++|||||||++| +||+|++|+||||||||||++|+|||||||||++.
T Consensus 26 S~~~~~~G~w~~~~g~~~~~~~~DkGL~t~~~ak~yAISakf-~pf~n~~k~LVvQYeVK~e~~idCGGaYiKLl~~~-- 102 (332)
T 3rg0_A 26 SKHKSDFGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSG-- 102 (332)
T ss_dssp CCSSSSCCCEEEECCSSCSSTTTTCEEEECSSSEEEEEEEEE-EEECCTTSCEEEEEEEEETTCCSEEECCEEEECSS--
T ss_pred CCCcccCCeEEeecCcccCCcccccceeecchhhhhhhhccc-CCccCCCCCEEEEEEEEcccccccCceEEEeecCc--
Confidence 33456679999999999866 679999999999999999999 89999999999999999999999999999999864
Q ss_pred cCCcccCCCCCCceEeeccCCcCC-CCeEEEEEeecCCCCCcccccccccCCCCccccCCCCceeEEEEEecCCeEEEEE
Q psy7421 295 LQDLTAFNDKTPYTIMFGPDKCGT-DDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYI 373 (465)
Q Consensus 295 ~~d~~~f~~~TpY~IMFGPD~CG~-~~kvHfI~~~knp~~~~~eek~~~~~~~~l~~~~D~~tHLYTLIi~pdnTyeI~I 373 (465)
+|+++|+++|||+||||||+||+ ++||||||||+|+ +|+.+. +++|++|++||||||||||||||||+|
T Consensus 103 -~d~~~f~~~TpY~IMFGPD~CG~~~~kvH~I~~~k~~-------~h~~kk--~i~~~~D~~THLYTLIi~pdntyeI~I 172 (332)
T 3rg0_A 103 -LDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGK-------NVLINK--DIRSKDDEFTHLYTLIVRPDNTYEVKI 172 (332)
T ss_dssp -CCGGGCCTTSCCSEEEEEEEETTTEEEEEEEEEETTE-------EEECSS--CCBCCCSSSEEEEEEEECTTSEEEEEE
T ss_pred -CCHhhcCCCCcceEEecCcccCCCCCEEEEEEEeCCc-------cccccC--CCCCCCCCCCceEEEEEcCCCeEEEEE
Confidence 89999999999999999999998 6899999999985 355433 467999999999999999999999999
Q ss_pred ccEEEEeeccccCCCCCCCCCCCCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCC------CCCccCCCCCCCCCCCC
Q psy7421 374 DNELNIEGHLLDEGTFNPPINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDED------EPYEIEDVEAHKPDGWL 447 (465)
Q Consensus 374 Dg~~v~~GsL~~d~~f~P~~~pPk~I~DP~d~KP~DWdD~~~I~DP~~~KPeDWDE~------~P~~IpDp~a~KP~dW~ 447 (465)
||++|.+|||++||+ ++||++|+||+|+||+|||||++|+||+|+||+|||+. .|++|.+|+-+ -.|
T Consensus 173 D~~~v~~GsL~~Dwd----~~ppk~I~Dp~d~KPedWdd~~~I~DP~a~KPeDWd~p~YkG~Wkp~~I~NP~Yk--G~W- 245 (332)
T 3rg0_A 173 DNSQVESGSLEDDWD----FLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDKGGSGGEWKPRQIDNPDYK--GTW- 245 (332)
T ss_dssp TTEEEEEEEHHHHSC----CSCCSEEECTTCCCCTTCCCCCCCC----------------------------CC--CCC-
T ss_pred CCEEEecccccCCCC----cCCccccCCcccCCcccCcCcccCCCcccCCccccccccccccccccccCCCccc--CCc-
Confidence 999999999999976 58999999999999999999999999999999999953 24556555433 123
Q ss_pred CCCCCCCCCCCCC
Q psy7421 448 SDEPKLIPDPSAV 460 (465)
Q Consensus 448 d~ep~~IpdP~~~ 460 (465)
.|++|+||+|.
T Consensus 246 --~p~~I~NP~Y~ 256 (332)
T 3rg0_A 246 --IHPEIDNPEYS 256 (332)
T ss_dssp --CCCEEECTTCC
T ss_pred --cCCccCCCCCc
Confidence 36667777665
No 3
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A*
Probab=100.00 E-value=1.7e-64 Score=494.49 Aligned_cols=164 Identities=34% Similarity=0.560 Sum_probs=148.2
Q ss_pred CCCCCccceEEeccCCCCCC-CCCcceeeCCccchhhhhccCCCccccCCCceEEEEEEEeecccccccceEEEccCCCC
Q psy7421 216 GASKDWLGQWSIEPLKLHPL-VGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPA 294 (465)
Q Consensus 216 gksKky~GkW~~~~~~~~~~-~~DkGLv~~~~ak~yaISa~l~kPf~~~~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~ 294 (465)
|+.+++.|+|+++++++++. ++|+||||+++|||||||++| +||++++|+||||||||||++|+|||||||||+..
T Consensus 31 S~~kk~~G~w~~~~g~~~~~~~~DkGL~t~~~Ak~yaISakl-~pf~~~~k~LVvQYeVk~q~~idCGGaYiKLl~~~-- 107 (265)
T 3pow_A 31 SKHKSDFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNS-- 107 (265)
T ss_dssp CCSSSCCCCEEEECCSSCSCTTTTCEEEECSSSEEEEEEEEE-EEECCTTSCEEEEEEEECTTCCSEEECCEEEECTT--
T ss_pred CCCcCcCCeEEeecccccCCcccccceeecchhhhhhhhccc-CCccCCCCCEEEEEEEEeccccccCceEEEeecCC--
Confidence 34456789999999999866 679999999999999999999 99999999999999999999999999999999864
Q ss_pred cCCcccCCCCCCceEeeccCCcCC-CCeEEEEEeecCCCCCcccccccccCCCCccccCCCCceeEEEEEecCCeEEEEE
Q psy7421 295 LQDLTAFNDKTPYTIMFGPDKCGT-DDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYI 373 (465)
Q Consensus 295 ~~d~~~f~~~TpY~IMFGPD~CG~-~~kvHfI~~~knp~~~~~eek~~~~~~~~l~~~~D~~tHLYTLIi~pdnTyeI~I 373 (465)
+++++|+++|||+||||||+||+ ++||||||||+|+ +|+.+. +++|++|++||||||||||||||||+|
T Consensus 108 -~~~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~k~~-------~h~~~~--~~~~~~D~~tHLYTLIi~pdntyeI~I 177 (265)
T 3pow_A 108 -LDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGK-------NVLINK--DIRCKDDEFTHLYTLIVRPDNTYEVKI 177 (265)
T ss_dssp -CCGGGCCTTSCCSEEEEEEEESTTCEEEEEEEEETTE-------EEECSS--CCBCCCSSSEEEEEEEECTTSEEEEEE
T ss_pred -CCHhhcCCCCCceEEecCcccCCCCCEEEEEEEcCCc-------cccccC--CCCCCCCCCCceEEEEEcCCCeEEEEE
Confidence 89999999999999999999998 7899999999985 355433 357899999999999999999999999
Q ss_pred ccEEEEeeccccCCCCCCC
Q psy7421 374 DNELNIEGHLLDEGTFNPP 392 (465)
Q Consensus 374 Dg~~v~~GsL~~d~~f~P~ 392 (465)
||+++.+|||++||+|.||
T Consensus 178 D~~~v~~GsL~~d~df~Pp 196 (265)
T 3pow_A 178 DNSQVESGSLEDDWDFLPG 196 (265)
T ss_dssp TTEEEEEEEHHHHSCC---
T ss_pred CCEEeeeccccCccccCCC
Confidence 9999999999999887544
No 4
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1
Probab=100.00 E-value=9.6e-44 Score=365.21 Aligned_cols=131 Identities=43% Similarity=0.910 Sum_probs=119.2
Q ss_pred hhcccccC--cCCCCCCCCCccCCCCCCCcccCCCCCCCCCCCccCCCCCCcCCCCCccCCCCCCCCCcCCcCCCCCCCC
Q psy7421 26 TFKQKLSK--RTNDKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYH 103 (465)
Q Consensus 26 ~~~~~~~~--~~wd~e~dGeWe~p~i~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp~I~NP~YkG~W~prkI~NP~y~e 103 (465)
+..+|.+. .+||++++|+|+||+|+||+|++++|||+|++|||.||+|||+|+||||+||+|+|+|+||+|+||+||+
T Consensus 287 ~I~DP~a~KPedWd~~~~G~W~~P~i~NP~~~~~~gcG~W~~P~I~NP~ykG~W~pp~I~NP~Ykg~W~p~~I~NP~y~~ 366 (424)
T 1jhn_A 287 YVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKIPNPDFFE 366 (424)
T ss_dssp CCBCTTCCCCTTCCTTTSCCCCCCBCCCGGGTTSSCBSSCCCCEEECTTCCCSCCCCEEECTTCCCSCCCCBCCCTTCCC
T ss_pred cCCCcccCCccccccCCCccccCcccCCchhcccccCCcccCCCCCCccccCcccCCccCCCcccccccccccCCccccC
Confidence 34455555 3799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCceeeeeeeeeehhhhhhcccCccceeeccccceeeeeEEecCCHHHHHHHHHHHhHhhhhcc
Q psy7421 104 DAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAKQFAEATFKQKLSKR 174 (465)
Q Consensus 104 d~~p~~~~~i~~~g~e~v~~~~~i~~~~~~~~ie~w~~~~~~~FDNilItdd~~~A~~~~~~t~~~k~~~~ 174 (465)
|.+||+|.+|+|||| |||||++|++|||||||+|+++|+++|++||+.|+..+
T Consensus 367 d~~p~~~~~i~~iG~------------------ElW~~~~g~~FDNilItdd~~~A~~~~~~t~~~k~~~e 419 (424)
T 1jhn_A 367 DLEPFKMTPFSAIGL------------------ELWSMTSDIFFDNFIVCGDRRVVDDWANDGWGLKKAAD 419 (424)
T ss_dssp CCCTTCCCCEEEEEE------------------CCCCSSSCCBCEEEEEESSSHHHHHHHHHTTTC-----
T ss_pred CCcccccCcccEEEE------------------EeEEeeCCcEEeeEEEcCCHHHHHHHHHhhhhhhhhhh
Confidence 999999999999985 68999999999999999999999999999999887544
No 5
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus}
Probab=99.97 E-value=9.5e-32 Score=269.25 Aligned_cols=137 Identities=26% Similarity=0.394 Sum_probs=85.1
Q ss_pred cceeeeee-ecchHHHHHHH-HHhhcccccC--cCCCCCCCCCccCCCCCCCcccCCCCCCCCCCCccCCCCCCcCCCCC
Q psy7421 5 VYFDNIII-TESLDEAKQFA-EATFKQKLSK--RTNDKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPP 80 (465)
Q Consensus 5 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~--~~wd~e~dGeWe~p~i~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp 80 (465)
|..||-.+ .-||.+--.+. .....||.++ .+||+.+ ....|....|.+++ ||+|||+|+||
T Consensus 170 I~ID~~~v~~GsL~~Dwd~~ppk~I~Dp~d~KPedWdd~~--~I~DP~a~KPeDWd-------------~p~YkG~Wkp~ 234 (332)
T 3rg0_A 170 VKIDNSQVESGSLEDDWDFLPPKKIKDPDAAKPEDWDERA--KIDDPTDSKPEDWD-------------KGGSGGEWKPR 234 (332)
T ss_dssp EEETTEEEEEEEHHHHSCCSCCSEEECTTCCCCTTCCCCC--CCC-----------------------------------
T ss_pred EEECCEEEecccccCCCCcCCccccCCcccCCcccCcCcc--cCCCcccCCccccc-------------ccccccccccc
Confidence 44555333 34555432221 1344666664 5787643 33445555555443 68899999999
Q ss_pred ccCCCCCCCCCcCCcCCCCCCCCCCCCCccCCceeeeeeeeeehhhhhhcccCccceeeccccceeeeeEEecCCHHHHH
Q psy7421 81 MINNPNYNGKWAPRMIPNPEYYHDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAK 160 (465)
Q Consensus 81 ~I~NP~YkG~W~prkI~NP~y~ed~~p~~~~~i~~~g~e~v~~~~~i~~~~~~~~ie~w~~~~~~~FDNilItdd~~~A~ 160 (465)
||+||||||+|+||+|+||+||+|.+||+|.+|+|||+ |||||++|++|||||||+|+++|+
T Consensus 235 ~I~NP~YkG~W~p~~I~NP~Y~~D~~~~~~~~i~~iG~------------------ElWq~~sg~iFDNilItdd~~~A~ 296 (332)
T 3rg0_A 235 QIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGL------------------DLWQVKSGTIFDNFLITNDEAYAE 296 (332)
T ss_dssp ------CCCCCCCCEEECTTCCCCTTTTCCSCEEEEEE------------------EEEESSCCEEEEEEEEESCHHHHH
T ss_pred ccCCCcccCCccCCccCCCCCcCCcchhccccccEEEE------------------EEEeccCCcEEeeEEEcCCHHHHH
Confidence 99999999999999999999999999999999999985 689999999999999999999999
Q ss_pred HHHHHHhHhhhhcc
Q psy7421 161 QFAEATFKQKLSKR 174 (465)
Q Consensus 161 ~~~~~t~~~k~~~~ 174 (465)
++|++||++|+..+
T Consensus 297 ~~~~~t~~~~~~~E 310 (332)
T 3rg0_A 297 EFGNETWGVTKAAE 310 (332)
T ss_dssp HHHHTTHHHHHHHH
T ss_pred HHHHHhhhhhhHHH
Confidence 99999999887643
No 6
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A
Probab=99.87 E-value=1.5e-23 Score=179.47 Aligned_cols=62 Identities=42% Similarity=0.868 Sum_probs=56.0
Q ss_pred CCCCCCCccc-----CCCCCCCCCCCccCCCCCCcCCCCCccCCCCCCCCCcCCcCCCCCCCCCCCC
Q psy7421 46 APQIENPLCV-----DAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYHDAEP 107 (465)
Q Consensus 46 ~p~i~NP~c~-----~~~gcG~W~~P~I~NP~YKG~W~pp~I~NP~YkG~W~prkI~NP~y~ed~~p 107 (465)
+.+|+||.|. +..+||+|++|||.||+|||+|+++||+||+|+|+|+||+|+||+||+|.++
T Consensus 35 ~~~I~dP~~~kP~dWd~~~~G~W~~p~I~NP~ykG~W~pp~I~NP~Ykg~W~p~~I~NP~y~~d~~~ 101 (101)
T 1hhn_A 35 PEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEYSPDANI 101 (101)
T ss_dssp CSEEECTTCCCCTTCCHHHHSSCCCCEEECTTCCSSCCCCCEECSSCCCCCCCCCBCCTTCCSSSCC
T ss_pred cccCCCcccCCccccCcccCCcccCCcCCCccCcCcccCCccCCCCCCCCccCCccCCCCccCCCCC
Confidence 4577777765 6678999999999999999999999999999999999999999999999753
No 7
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A
Probab=99.78 E-value=5.2e-20 Score=157.59 Aligned_cols=63 Identities=48% Similarity=0.912 Sum_probs=57.7
Q ss_pred CCcccCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCC-----CCCCCCCCCCC
Q psy7421 396 PKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSD-----EPKLIPDPSAV 460 (465)
Q Consensus 396 Pk~I~DP~d~KP~DWdD~~~I~DP~~~KPeDWDE~~P~~IpDp~a~KP~dW~d~-----ep~~IpdP~~~ 460 (465)
|++|+||+++||+|||++++|+||+|+||+|||| +++|+||+|+||++|+++ +++||+||+|+
T Consensus 1 p~~I~Dp~~~KPeDWd~~~~I~DP~a~KPeDWde--~~~I~dP~~~kP~dWd~~~~G~W~~p~I~NP~yk 68 (101)
T 1hhn_A 1 SKKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDK--PEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYK 68 (101)
T ss_dssp CCSBCCSTTCCCSCCSTTSEECCSSCCCCSTTCC--CSEEECTTCCCCTTCCHHHHSSCCCCEEECTTCC
T ss_pred CcccCCcccCCccccccccccCCcccCCccCccc--cccCCCcccCCccccCcccCCcccCCcCCCccCc
Confidence 6899999999999999999999999999999996 789999999999999986 37777777775
No 8
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A*
Probab=99.08 E-value=6.8e-11 Score=116.21 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=45.7
Q ss_pred CCCCCCCccCCceeeeeeeeeehhhhhhcccCccceeeccccceeeeeEEecCCHHHHHHHHHHHhHhhhhcc
Q psy7421 102 YHDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAKQFAEATFKQKLSKR 174 (465)
Q Consensus 102 ~ed~~p~~~~~i~~~g~e~v~~~~~i~~~~~~~~ie~w~~~~~~~FDNilItdd~~~A~~~~~~t~~~k~~~~ 174 (465)
.+|.++|++.+|+++|+ |||||++|+||||||||||+++|+++|++||++++..+
T Consensus 197 ~~d~~ly~~~~i~~vGl------------------dlWQvksGtiFDNiLITDd~~~A~~~~eetw~~~k~~E 251 (265)
T 3pow_A 197 SGDPSIYAYDNFGVLGL------------------DLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAE 251 (265)
T ss_dssp ----CTTCCSCEEEEEE------------------EEEESSCCCEEEEEEEESCHHHHHHHHHHTHHHHHHHH
T ss_pred CCCccccccccccEEEE------------------EEEEecCCeEeccEEecCCHHHHHHHHHHHHHhhhHHH
Confidence 45667788889988875 68999999999999999999999999999999876543
No 9
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris}
Probab=98.68 E-value=8.1e-09 Score=73.97 Aligned_cols=29 Identities=48% Similarity=0.783 Sum_probs=26.1
Q ss_pred CCCCccCCCCCCCCCCCCCC-----CCCCCCCCC
Q psy7421 430 DEPYEIEDVEAHKPDGWLSD-----EPKLIPDPS 458 (465)
Q Consensus 430 ~~P~~IpDp~a~KP~dW~d~-----ep~~IpdP~ 458 (465)
++|++|+||+|+||+||+++ ++|||+||.
T Consensus 5 dep~~IpDP~a~KP~DWdde~DGeWe~P~I~NPk 38 (38)
T 3ici_C 5 DEPKFIPDPNAEKPDDWNEDMDGEWEAPRISNPA 38 (38)
T ss_pred cccccccCCCCCCCCCcCcCcCCcccCCcCCCcC
Confidence 47999999999999999987 499999995
No 10
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris}
Probab=97.80 E-value=1.3e-05 Score=57.53 Aligned_cols=19 Identities=58% Similarity=1.146 Sum_probs=11.5
Q ss_pred CCCCCCCCCccCCCCCCCc
Q psy7421 35 TNDKEMDGEWEAPQIENPL 53 (465)
Q Consensus 35 ~wd~e~dGeWe~p~i~NP~ 53 (465)
+||+|+||+|+||+|+||+
T Consensus 20 DWdde~DGeWe~P~I~NPk 38 (38)
T 3ici_C 20 DWNEDMDGEWEAPRISNPA 38 (38)
T ss_pred CcCcCcCCcccCCcCCCcC
Confidence 4666666666666666653
No 11
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=50.91 E-value=1.2e+02 Score=27.07 Aligned_cols=122 Identities=18% Similarity=0.306 Sum_probs=61.9
Q ss_pred ccceEEeccCCCCCCCCCcceeeCCccchhhhhccCCCccccCCCceEEEEEEEeecccccccceEEEccCCCCcCCccc
Q psy7421 221 WLGQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTA 300 (465)
Q Consensus 221 y~GkW~~~~~~~~~~~~DkGLv~~~~ak~yaISa~l~kPf~~~~k~LVvQYeVk~q~~idCGGaYIKLl~~~~~~~d~~~ 300 (465)
+.|.|+++.+ ||+.+....-++++ +.+-++++|+-+||...+-..|-+-|- |... .|
T Consensus 36 ~~g~W~v~~g---------gl~~~~~~~~~l~t-------~~~~~Df~le~dvk~~~~~~~g~~Gi~-fR~~---~d--- 92 (185)
T 4b1m_A 36 VNGTWADTIE---------GKQGRSDGDSFILS-------SASGSDFTYESDITIKDGNGRGAGALM-FRSD---KD--- 92 (185)
T ss_dssp CSSEEEEETT---------EEEEEEEEEEEEEE-------EEEESSEEEEEEEEEEEEEEEEEEEEE-EEEC---TT---
T ss_pred CCCeEEEeCC---------cEEEecCCCcEEEc-------CCCccCEEEEEEEEEcCCCCcceEEEE-EEEc---CC---
Confidence 4578887743 66544332222222 112478999999999875211222242 3221 12
Q ss_pred CCCCCCceEeeccCCcCCCCeEEEEEeecCCCCCcccccccccCCCCccccCCCCceeEEEEEecCCeEEEEEccEEEEe
Q psy7421 301 FNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIE 380 (465)
Q Consensus 301 f~~~TpY~IMFGPD~CG~~~kvHfI~~~knp~~~~~eek~~~~~~~~l~~~~D~~tHLYTLIi~pdnTyeI~IDg~~v~~ 380 (465)
...-|.+.+.|. .+++.+ .++.+ +.+. .+...+..+ .....|-++++++ .++.+++|||+.+.+
T Consensus 93 --~~~gY~~~i~~~----~~~~~l-~k~~~---g~~~--~L~~~~~~~---~~g~w~~l~I~~~-G~~i~~~vnG~~v~~ 156 (185)
T 4b1m_A 93 --AKNGYLANVDAK----HDLVKF-FKFEN---GAAS--VIAEYKTPI---DVNKKYHLKTEAE-GDRFKIYLDDRLVID 156 (185)
T ss_dssp --SSSEEEEEEETT----TTEEEE-EEEET---TEEE--EEEEEECCC---CSSCCEEEEEEEE-TTEEEEEETTEEEEE
T ss_pred --CCCcEEEEEECC----CCEEEE-EEEeC---CcEE--EeeeccccC---CCCCeEEEEEEEE-CCEEEEEECCEEEEE
Confidence 125688888774 234433 33332 2211 121111222 1234455555554 679999999988765
Q ss_pred e
Q psy7421 381 G 381 (465)
Q Consensus 381 G 381 (465)
-
T Consensus 157 ~ 157 (185)
T 4b1m_A 157 A 157 (185)
T ss_dssp E
T ss_pred E
Confidence 3
No 12
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Probab=30.96 E-value=65 Score=26.78 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=37.8
Q ss_pred CCCCceEeeccCCcCCCCeEEEEEeecCCCCCcccccccccCCCCccccCCCCceeEEEE-EecCCeEEEEEc
Q psy7421 303 DKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESPHLYTLV-LYPDNKYAVYID 374 (465)
Q Consensus 303 ~~TpY~IMFGPD~CG~~~kvHfI~~~knp~~~~~eek~~~~~~~~l~~~~D~~tHLYTLI-i~pdnTyeI~ID 374 (465)
..+.+.|..-|-.-|..--.|+++.|+......+. +... . ...+.-|||. |.|+.+|++||=
T Consensus 20 ~~~sv~L~W~p~~dggsPI~~Y~I~yr~~~~~~w~--~~~~------~--~~~~~~~~l~~L~p~t~Y~frV~ 82 (114)
T 2kbg_A 20 SGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQW--LEKK------V--QGNKDHIILEHLQWTMGYEVQIT 82 (114)
T ss_dssp STTCEEEEECCCCCSSSCCSEEEEEEEESSCCSCC--EEEE------E--ETTTCCEEECCCCTTCCEEEEEE
T ss_pred CCCEEEEEEECCCCCCCcccEEEEEEEeCCCCCcE--EeEE------c--CCCcCEEEEcCCCCCCEEEEEEE
Confidence 45667788877544555567899999764222211 1110 1 1123448884 899999999984
No 13
>2quo_A Heat-labIle enterotoxin B chain; beta sandwich, claudin-4 binding domain, therapeutic agent; 1.75A {Clostridium perfringens}
Probab=30.90 E-value=36 Score=28.87 Aligned_cols=34 Identities=24% Similarity=0.634 Sum_probs=24.4
Q ss_pred EEeecccccc------------cceEEEccCCCCcCCcccCCCCCCceEeec
Q psy7421 273 VMFQDKHDCG------------GAYLKLLTEGPALQDLTAFNDKTPYTIMFG 312 (465)
Q Consensus 273 Vk~q~~idCG------------GaYIKLl~~~~~~~d~~~f~~~TpY~IMFG 312 (465)
||++|.+--| |.|+-.+... ..+++.-||+|+|-
T Consensus 79 vkleqslgdgvkdhyvdisldagqyvlvmkan------ssysgnypysilfq 124 (126)
T 2quo_A 79 VKLEQSLGDGVKDHYVDISLDAGQYVLVMKAN------SSYSGNYPYSILFQ 124 (126)
T ss_dssp EEEEEECCCSSSCEEEEEEECSEEEEEEEEES------SCCSSCBCCEEEEE
T ss_pred HHHHHHhcccchhceEEEEecCCcEEEEEecc------CcccCCCCceEeee
Confidence 5677665444 7788777653 45789999999983
No 14
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=27.35 E-value=62 Score=27.47 Aligned_cols=24 Identities=13% Similarity=-0.018 Sum_probs=20.1
Q ss_pred EEEEEecCCeEEEEEccEEEEeec
Q psy7421 359 YTLVLYPDNKYAVYIDNELNIEGH 382 (465)
Q Consensus 359 YTLIi~pdnTyeI~IDg~~v~~Gs 382 (465)
.+|+--..+.|||.|||+.|-+-.
T Consensus 40 v~l~P~~~G~FEV~vng~lV~SKk 63 (104)
T 2oka_A 40 VCLEPGTGGVFRITCDGVQVWERK 63 (104)
T ss_dssp EEEEEECTTCEEEEETTEEEEEHH
T ss_pred EEEEeCCCceEEEEECCEEEEEEe
Confidence 577777789999999999998754
No 15
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=26.86 E-value=64 Score=27.42 Aligned_cols=25 Identities=8% Similarity=0.130 Sum_probs=20.1
Q ss_pred eEEEEEecCCeEEEEEccEEEEeec
Q psy7421 358 LYTLVLYPDNKYAVYIDNELNIEGH 382 (465)
Q Consensus 358 LYTLIi~pdnTyeI~IDg~~v~~Gs 382 (465)
-.+|+--..+.|||.|||+.|-+-.
T Consensus 37 ~v~l~P~~~G~FEV~vng~lV~SKk 61 (105)
T 2p0g_A 37 YVALHPDTGGRFEIFCNGVQIWERK 61 (105)
T ss_dssp EEEEEEESTTCEEEEETTEEEEEHH
T ss_pred eEEEEeCCCceEEEEECCEEEEEEe
Confidence 3567766788999999999998754
No 16
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=25.09 E-value=72 Score=27.35 Aligned_cols=25 Identities=8% Similarity=-0.011 Sum_probs=20.5
Q ss_pred eEEEEEecCCeEEEEEccEEEEeec
Q psy7421 358 LYTLVLYPDNKYAVYIDNELNIEGH 382 (465)
Q Consensus 358 LYTLIi~pdnTyeI~IDg~~v~~Gs 382 (465)
=.+|+--..+.|||.|||+.|-+-.
T Consensus 42 eV~L~P~~~G~FeV~vng~lVwsRk 66 (108)
T 2ojl_A 42 EVALVPGTGGVFRIHYNGAPLWDRE 66 (108)
T ss_dssp EEEEEEECTTCEEEEETTEEEEEHH
T ss_pred eEEEEeCCCceEEEEECCEEEEEEc
Confidence 3577777789999999999998754
No 17
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=23.44 E-value=79 Score=27.05 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=24.1
Q ss_pred ccCCCCceeEEEEEecCCeEEEEEccEEEEeec
Q psy7421 350 LYSNESPHLYTLVLYPDNKYAVYIDNELNIEGH 382 (465)
Q Consensus 350 ~~~D~~tHLYTLIi~pdnTyeI~IDg~~v~~Gs 382 (465)
-+.+.+.- .+|+--..++|+|.|||+.|-+-.
T Consensus 39 tF~~~l~e-VsL~Pg~gG~FeV~vdg~lVwsRk 70 (107)
T 3dex_A 39 TFETELTE-LALKPGTGGVFVVRVDDEVVWDRR 70 (107)
T ss_dssp HSTTTEEE-EEEEEESSSCEEEEETTEEEEEHH
T ss_pred hcccccce-EEEEeCCCceEEEEECCEEEEEec
Confidence 34444433 478777789999999999998876
No 18
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=21.55 E-value=93 Score=26.35 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=19.9
Q ss_pred EEEEEecCCeEEEEEccEEEEeec
Q psy7421 359 YTLVLYPDNKYAVYIDNELNIEGH 382 (465)
Q Consensus 359 YTLIi~pdnTyeI~IDg~~v~~Gs 382 (465)
.+|+--..+.|||.|||+.|-+.-
T Consensus 42 V~l~P~~~G~FEV~vng~lV~SKk 65 (105)
T 2fa8_A 42 VSLIPSTGGLFEITVDGTIIWERK 65 (105)
T ss_dssp EEEEEECTTCEEEEETTEEEEEHH
T ss_pred EEEEcCCCcEEEEEECCEEEEEec
Confidence 467766788999999999998864
Done!