RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7421
(465 letters)
>gnl|CDD|215825 pfam00262, Calreticulin, Calreticulin family.
Length = 359
Score = 310 bits (797), Expect = e-103
Identities = 134/253 (52%), Positives = 162/253 (64%), Gaps = 11/253 (4%)
Query: 215 SGASKDWLGQWSIEPLKLHP-LVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEV 273
S A KD G+W +E K + D GLV K AK +AISA KPF V+QYEV
Sbjct: 20 SKAKKDDDGKWKVEAGKFYGGEEKDKGLVTKDDAKFYAISAKFPKPFSNKGKTLVVQYEV 79
Query: 274 MFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDK-VHFIIRHRNPL 332
Q DCGGAY+KLL++ D F+ +TPYTIMFGPD CG+D K VHFI RH+ P+
Sbjct: 80 KLQQGIDCGGAYIKLLSKDF---DQKDFSGETPYTIMFGPDICGSDTKKVHFIFRHK-PI 135
Query: 333 NGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPP 392
G EKH IK ++ ++ HLYTL++ PDN + + ID E+ G LL++ F+PP
Sbjct: 136 TGYKEEKH--LIKKPISRC-DKLTHLYTLIIRPDNTFEILIDGEVVKSGSLLED--FDPP 190
Query: 393 INPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPK 452
NPPKEI D DKKP WD+REKIPDPE KPEDWDEDEP I D A KP+GWL DEP+
Sbjct: 191 FNPPKEIPDPTDKKPEDWDDREKIPDPEAKKPEDWDEDEPEFIPDPNAVKPEGWLEDEPE 250
Query: 453 LIPDPSAVKPADW 465
IPDP A KP DW
Sbjct: 251 YIPDPDATKPEDW 263
Score = 123 bits (311), Expect = 2e-31
Identities = 48/77 (62%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
Query: 37 DKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMI 96
D E DGEWEAP I NP C A GC P+IKNPK+KGKW PPMI+NPNY G W PR I
Sbjct: 264 DDEEDGEWEAPMIPNPKCEKACGC--GKPPMIKNPKYKGKWKPPMIDNPNYKGVWKPRKI 321
Query: 97 PNPEYYHDAEPFKLFPI 113
PNP+Y+ D P+ L PI
Sbjct: 322 PNPDYFEDPNPYNLEPI 338
>gnl|CDD|239584 cd03507, Delta12-FADS-like, The Delta12 Fatty Acid Desaturase
(Delta12-FADS)-like CD includes the integral-membrane
enzymes, delta-12 acyl-lipid desaturases, oleate
12-hydroxylases, omega3 and omega6 fatty acid
desaturases, and other related proteins, found in a wide
range of organisms including higher plants, green algae,
diatoms, nematodes, fungi, and bacteria. The expression
of these proteins appears to be temperature dependent:
decreases in temperature result in increased levels of
fatty acid desaturation within membrane lipids
subsequently altering cell membrane fluidity. An
important enzyme for the production of polyunsaturates
in plants is the oleate delta-12 desaturase (Arabidopsis
FAD2) of the endoplasmic reticulum. This enzyme accepts
l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate
and requires NADH:cytochrome b oxidoreductase,
cytochrome b, and oxygen for activity. FAD2 converts
oleate(18:1) to linoleate (18:2) and is closely related
to oleate 12-hydroxylase which catalyzes the
hydroxylation of oleate to ricinoleate. Plastid-bound
desaturases (Arabidopsis delta-12 desaturase (FAD6),
omega-3 desaturase (FAD8), omega-6 desaturase (FAD6)),
as well as, the cyanobacterial thylakoid-bound FADSs
require oxygen, ferredoxin, and ferredoxin
oxidoreductase for activity. As in higher plants, the
cyanobacteria delta-12 (DesA) and omega-3 (DesB) FADSs
desaturate oleate (18:1) to linoleate (18:2) and
linoleate (18:2) to linolenate (18:3), respectively.
Omega-3 (DesB/FAD8) and omega-6 (DesD/FAD6) desaturases
catalyze reactions that introduce a double bond between
carbons three and four, and carbons six and seven,
respectively, from the methyl end of fatty acids. As
with other members of this superfamily, this domain
family has extensive hydrophobic regions that would be
capable of spanning the membrane bilayer at least twice.
Comparison of sequences also reveals the existence of
three regions of conserved histidine cluster motifs that
contain eight histidine residues: HXXXH, HXX(X)HH, and
HXXHH. These histidine residues are reported to be
catalytically essential and proposed to be the ligands
for the iron atoms contained within the homologue,
stearoyl CoA desaturase. Mutation of any one of four of
these histidines in the Synechocystis delta-12
acyl-lipid desaturase resulted in complete inactivity.
Length = 222
Score = 39.1 bits (92), Expect = 0.002
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 187 YTQENPWLWAVYVIVTGVFVVLFYVL---CCSGA---SK---DWLGQWSIEPLKLHPLVG 237
+ WLW +Y IV G+F+ +VL C G+ ++ D +G + L P
Sbjct: 25 SLLLSWWLWPLYWIVQGLFLTGLFVLGHDCGHGSFSDNRRLNDIVG-HILHSPLLVPYHS 83
Query: 238 DSGLVQKSKAKHHAISANLDKPFIF 262
+ S +HHA + NL+ ++
Sbjct: 84 ----WRISHNRHHAHTGNLEGDEVW 104
>gnl|CDD|198410 cd10428, LFG_like, Proteins similar to and including lifeguard
(LFG), a putative regulator of apoptosis. Lifeguard
(LFG) inhibits Fas-mediated apoptosis and interacts with
the death receptor FasR/CD95/Apo1. LFG has been shown to
interact with Bax and is supposed to be integral to
cellular membranes such as the ER. A close homolog,
PP1201 or RECS1, appears located in the Golgi
compartment and also interacts with the Fas receptor
CD95/Apo1. PP1201 is expressed in response to shear
stress.
Length = 217
Score = 36.8 bits (86), Expect = 0.013
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 179 SFVSMVMKYTQENPWLWAVYVIVTGVFVVLFYVL-CCSGA 217
+F V K+ ++NPWL Y + VF + + L CC G
Sbjct: 34 TFHDPVKKFVRKNPWL---YYVSYIVFFITYIALACCEGL 70
>gnl|CDD|235947 PRK07152, nadD, putative nicotinate-nucleotide adenylyltransferase;
Validated.
Length = 342
Score = 34.5 bits (80), Expect = 0.11
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 107 PFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIIT 153
K I ST + + L PK+ YIN +Y ++I+ +
Sbjct: 150 KNKNLNISST-----KIRKGNLLGKLDPKVNDYINENFLYLEDILKS 191
>gnl|CDD|221214 pfam11769, DUF3313, Protein of unknown function (DUF3313). This a
bacterial family of proteins which are annotated as
putative lipoproteins.
Length = 202
Score = 33.4 bits (77), Expect = 0.14
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 13/72 (18%)
Query: 115 STLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIIT------------ESLDEAKQF 162
S L+ R R++ P + Y V D + + E L E +
Sbjct: 24 SGLEPGKSPSGRAVLRWVDPGVDLS-QYDKVIIDPVEVYPGPDPTFQRVSQEDLAELANY 82
Query: 163 AEATFKQKLSKR 174
+ K++LSKR
Sbjct: 83 FDQALKEELSKR 94
>gnl|CDD|176546 cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester
phosphodiesterase domain repeat 2 of
glycerophosphodiester phosphodiesterase-like protein
SHV3 and SHV3-like proteins. This subfamily corresponds
to the glycerophosphodiester phosphodiesterase domain
(GDPD) repeat 2 present in glycerophosphodiester
phosphodiesterase (GP-GDE)-like protein SHV3 and
SHV3-like proteins (SVLs), which may play important an
role in cell wall organization. The prototype of this
family is a glycosylphosphatidylinositol (GPI) anchored
protein SHV3 encoded by shaven3 (shv3) gene from
Arabidopsis thaliana. Members in this family show
sequence homology to bacterial GP-GDEs (EC 3.1.4.46)
that catalyze the hydrolysis of various
glycerophosphodiesters, and produce
sn-glycerol-3-phosphate (G3P) and the corresponding
alcohols. Both, SHV3 and SVLs, have two tandemly
repeated GDPD domains whose biochemical functions remain
unclear. The residues essential for interactions with
the substrates and calcium ions in bacterial GP-GDEs are
not conserved in SHV3 and SVLs, which suggests that the
function of GDPD domains in these proteins might be
distinct from those in typical bacterial GP-GDEs. In
addition, the two tandem repeats show low sequence
similarity to each other, suggesting they have different
biochemical function. Most of the members of this family
are Arabidopsis-specific gene products. To date, SHV3
orthologues are only found in Physcomitrella patens.
This CD includes domain II (the second GDPD domain of
SHV3 and SVLs), which is necessary for SHV3 function.
Length = 300
Score = 33.1 bits (76), Expect = 0.26
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 135 KIQKYINYQNVYF--DNI--IITESLDEAKQFAEATFKQKLSKRTNDKSFVS 182
+K I+Y+ VY + I S++E K+FA+A + S SF++
Sbjct: 186 AFKKQISYERVYVVDETIRDASDSSIEEIKKFADAVVIDRGSVFPVSTSFLT 237
>gnl|CDD|222372 pfam13777, DUF4173, Domain of unknown function (DUF4173). This
domain of unknown function contains multiple predicted
transmembrane domains.
Length = 188
Score = 29.8 bits (68), Expect = 1.8
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 180 FVSMVMKYTQENPWLWAVYVIVTGVFVVLFYVLCCSGASKDWL 222
+ + + T++ L ++ G++ L VL S A + L
Sbjct: 52 VILVARRATRKRRLL----RVLLGLWCALTLVLVASAALRMDL 90
>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown].
Length = 931
Score = 30.9 bits (70), Expect = 1.9
Identities = 15/84 (17%), Positives = 18/84 (21%), Gaps = 10/84 (11%)
Query: 387 GTFNPPINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYE---IEDVEAH-- 441
G + + P E I PEV P + E E A
Sbjct: 45 GPVAKAAEQM-AAPEAAEAAPLPAAA-ESIASPEVPPPVPPAPAQEGEAPAAEQPSAVPA 102
Query: 442 KPDGWLSDEPKLIPDPSAVKPADW 465
EP PS
Sbjct: 103 PSAAPAPAEPVE---PSLAANPFA 123
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 30.1 bits (68), Expect = 2.7
Identities = 12/90 (13%), Positives = 30/90 (33%), Gaps = 5/90 (5%)
Query: 127 IFSRYLSPKIQKYINYQNVYFDNI--IITESLD---EAKQFAEATFKQKLSKRTNDKSFV 181
+ L+ K +K + + ESL K F + K + N++
Sbjct: 167 LVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRR 226
Query: 182 SMVMKYTQENPWLWAVYVIVTGVFVVLFYV 211
+ + E + ++ + V++ +
Sbjct: 227 ANLRASRLEALLAPLMLLLSSLGTVLVLAL 256
>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid
transport and metabolism].
Length = 228
Score = 29.7 bits (67), Expect = 2.9
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 193 WLWAVYVIVTGVF----VVLFYVLCCSGASKDWLGQWSIEPLKLHPLVGDSGLV 242
LW + +LFY+L A L Q P P +G SG +
Sbjct: 90 ALWVFGSNLERRLGTLRFLLFYLLSGLLAG---LAQVLFGPKGGAPSLGASGAI 140
>gnl|CDD|221792 pfam12823, DUF3817, Domain of unknown function (DUF3817). This
domain is of unknown function. It is sometimes found
adjacent to pfam07690 and pfam03176 which are both
transporter domains.
Length = 92
Score = 27.9 bits (63), Expect = 3.4
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 180 FVSMVMKYTQENPWLWAVYVI--VTGVFVVLFYVLCCSGASKDWLGQWSI 227
F++M +KY P AV +I + G V++ V A K +WS
Sbjct: 22 FIAMPLKYLAGIP--LAVKIIGPIHGWLFVVYLVAALDLAVK---ARWSF 66
>gnl|CDD|198350 cd07772, FGGY_NaCK_like, Novosphingobium aromaticivorans
carbohydrate kinase-like proteins; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of uncharacterized bacterial
proteins with similarity to carbohydrate kinase from
Novosphingobium aromaticivorans (NaCK). These proteins
may catalyze the transfer of a phosphate group from ATP
to their carbohydrate substrates. They belong to the
FGGY family of carbohydrate kinases, the monomers of
which contain two large domains, which are separated by
a deep cleft that forms the active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain.
Length = 419
Score = 28.5 bits (64), Expect = 7.5
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 405 KKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSD 449
K +D + D ++P D+PY DVEA WL D
Sbjct: 12 AKLFLFDADGREVD-RASRPNAVLPDDPYPHLDVEALW--AWLLD 53
>gnl|CDD|220690 pfam10321, 7TM_GPCR_Srt, Serpentine type 7TM GPCR chemoreceptor
Srt. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srt is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 313
Score = 28.3 bits (64), Expect = 8.1
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 184 VMKYTQENPW-LWAVYVIVTGVFVVLFYVLC 213
T + Y +V+G+ +++ Y+ C
Sbjct: 23 EWSETIGVKRPILGAYFLVSGIIILILYIPC 53
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.136 0.428
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,444,862
Number of extensions: 2400527
Number of successful extensions: 2385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2358
Number of HSP's successfully gapped: 29
Length of query: 465
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 365
Effective length of database: 6,502,202
Effective search space: 2373303730
Effective search space used: 2373303730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)