RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7421
(465 letters)
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus
familiaris} SCOP: b.29.1.12 b.104.1.1
Length = 424
Score = 260 bits (666), Expect = 9e-83
Identities = 131/244 (53%), Positives = 171/244 (70%), Gaps = 4/244 (1%)
Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
G+W ++ +K L GD GLV S+AKHHAISA L+KPF+F+ P ++QYEV FQ+ +CG
Sbjct: 59 GKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECG 118
Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
GAY+KLL++ P L +L F+DKTPYTIMFGPDKCG D K+HFI RH+NP G EKH K
Sbjct: 119 GAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAK 177
Query: 343 AIK-PSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEIVD 401
++++ HLYTL+L PDN + + +D + G+LL++ PP+NP +EI D
Sbjct: 178 RPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLND--MTPPVNPSREIED 235
Query: 402 VNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVK 461
D+KP WDER KIPDP+ KP+DW+ED P +I D EA KPDGWL DEP+ +PDP A K
Sbjct: 236 PEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEK 295
Query: 462 PADW 465
P DW
Sbjct: 296 PEDW 299
Score = 133 bits (335), Expect = 1e-34
Identities = 56/134 (41%), Positives = 75/134 (55%), Gaps = 18/134 (13%)
Query: 37 DKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMI 96
D++MDGEWEAPQI NP C APGCG W P+I NP +KGKW PPMI+NPNY G W PR I
Sbjct: 300 DEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKI 359
Query: 97 PNPEYYHDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESL 156
PNP+++ D EPFK+ P + ++ + +++FDN I+
Sbjct: 360 PNPDFFEDLEPFKMTPFSAIG------------------LELWSMTSDIFFDNFIVCGDR 401
Query: 157 DEAKQFAEATFKQK 170
+A + K
Sbjct: 402 RVVDDWANDGWGLK 415
Score = 36.7 bits (84), Expect = 0.016
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 1 MSENVYFDNIIITESLDEAKQFAEATFKQK 30
M+ +++FDN I+ +A + K
Sbjct: 386 MTSDIFFDNFIVCGDRRVVDDWANDGWGLK 415
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
binding, carbohydrate binding, calcium binding,
endoplasmic reticulu; 2.57A {Mus musculus}
Length = 332
Score = 194 bits (493), Expect = 3e-58
Identities = 82/250 (32%), Positives = 110/250 (44%), Gaps = 33/250 (13%)
Query: 215 SGASKDWLGQWSIEPLKLHP-LVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEV 273
S D G++ + K + L D GL A+ +A+SA + PF V+Q+ V
Sbjct: 26 SKHKSD-FGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKFE-PFSNKGQTLVVQFTV 83
Query: 274 MFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDD-KVHFIIRHRNPL 332
+ DCGG Y+KL G D + + Y IMFGPD CG KVH I ++
Sbjct: 84 KHEQNIDCGGGYVKLFPSG---LDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKN 140
Query: 333 NGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPP 392
+ K +E HLYTL++ PDN Y V IDN G L D +
Sbjct: 141 VLINKDIRSK---------DDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLED----DWD 187
Query: 393 INPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPK 452
PPK+I D + KP WDER KI DP +KPEDWD+ W +P+
Sbjct: 188 FLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDKGGS----------GGEW---KPR 234
Query: 453 LIPDPSAVKP 462
I +P
Sbjct: 235 QIDNPDYKGT 244
Score = 81.3 bits (200), Expect = 5e-17
Identities = 28/138 (20%), Positives = 44/138 (31%), Gaps = 26/138 (18%)
Query: 33 KRTNDKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWA 92
K + + + E +I++P G+W P I+NP+Y G W
Sbjct: 195 KDPDAAKPEDWDERAKIDDPTDSKPEDWD--------KGGSGGEWKPRQIDNPDYKGTWI 246
Query: 93 PRMIPNPEYYHDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIII 152
I NPEY DA + + + FDN +I
Sbjct: 247 HPEIDNPEYSPDANIYAYDSFA------------------VLGLDLWQVKSGTIFDNFLI 288
Query: 153 TESLDEAKQFAEATFKQK 170
T A++F T+
Sbjct: 289 TNDEAYAEEFGNETWGVT 306
Score = 37.7 bits (87), Expect = 0.006
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 1 MSENVYFDNIIITESLDEAKQFAEATFKQKLSKRTNDKEMDGEWEAPQ 48
+ FDN +IT A++F T+ + +K+M + + Q
Sbjct: 277 VKSGTIFDNFLITNDEAYAEEFGNETWGV---TKAAEKQMKDKQDEEQ 321
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional,
carboh binding, peptide binding, multi-compartmental,
chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A*
3o0v_A* 3o0x_A*
Length = 265
Score = 162 bits (411), Expect = 5e-47
Identities = 63/248 (25%), Positives = 95/248 (38%), Gaps = 25/248 (10%)
Query: 215 SGASKDWLGQWSIEPLKLHP-LVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEV 273
S D G++ + K + D GL A+ +A+SA+ + PF V+Q+ V
Sbjct: 31 SKHKSD-FGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFE-PFSNKGQTLVVQFTV 88
Query: 274 MFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDD-KVHFIIRHRNPL 332
+ DCGG Y+KL D T + + Y IMFGPD CG KVH I ++
Sbjct: 89 KHEQNIDCGGGYVKLFPNS---LDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGK- 144
Query: 333 NGSITEKHHKAIKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPP 392
I + +E HLYTL++ PDN Y V IDN G L D+ F P
Sbjct: 145 ------NVL--INKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPG 196
Query: 393 INPPK--EIVDVNDKKPATWDEREKIP------DPEVTKPEDWDEDEPYEIEDVEAHKPD 444
P + W + + E++ + + E +
Sbjct: 197 SGDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEK-QMK 255
Query: 445 GWLSDEPK 452
+E +
Sbjct: 256 DKQDEEQR 263
Score = 37.4 bits (86), Expect = 0.006
Identities = 14/121 (11%), Positives = 33/121 (27%), Gaps = 23/121 (19%)
Query: 50 ENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYHDAEPFK 109
++ C D +T+ + + ++ K + + + W + + F
Sbjct: 150 KDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPGSGDPSIYAYDNFG 209
Query: 110 LFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAKQFAEATFKQ 169
+ + FDN +IT A++F T+
Sbjct: 210 -----------------------VLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGV 246
Query: 170 K 170
Sbjct: 247 T 247
Score = 29.7 bits (66), Expect = 1.7
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 1 MSENVYFDNIIITESLDEAKQFAEATFKQKLSKRTNDKEMDGEWEA 46
+ FDN +IT A++F T+ + +K+M + +
Sbjct: 218 VKSGTIFDNFLITNDEAYAEEFGNETWGV---TKAAEKQMKDKQDE 260
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP:
b.104.1.1 PDB: 1k9c_A 1k91_A
Length = 101
Score = 71.8 bits (176), Expect = 1e-15
Identities = 26/60 (43%), Positives = 34/60 (56%)
Query: 47 PQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYHDAE 106
P + P D G W P+I+NP++KG+W P I+NP+Y G W I NPEY DA
Sbjct: 41 PDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEYSPDAN 100
Score = 71.1 bits (174), Expect = 2e-15
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 397 KEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPD 456
K+I D + KP WDER KI DP +KPEDW D+P I D +A KP+ W +
Sbjct: 2 KKIKDPDAAKPEDWDERAKIDDPTDSKPEDW--DKPEHIPDPDAKKPEDWDEEMDGEWEP 59
Query: 457 PSAVKPA 463
P P
Sbjct: 60 PVIQNPE 66
Score = 66.1 bits (161), Expect = 1e-13
Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 4/52 (7%)
Query: 414 EKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVKPADW 465
+KI DP+ KPEDWDE +I+D KP+ W D+P+ IPDP A KP DW
Sbjct: 2 KKIKDPDAAKPEDWDERA--KIDDPTDSKPEDW--DKPEHIPDPDAKKPEDW 49
Score = 59.1 bits (143), Expect = 3e-11
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 396 PKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIP 455
+I D D KP WD+ E IPDP+ KPEDWDE+ E E P+ +P+ I
Sbjct: 18 RAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQID 77
Query: 456 DP 457
+P
Sbjct: 78 NP 79
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum,
glycoprotein isomerase, rotamase, chaperone, lectin,
membrane; HET: MES; 1.70A {Canis lupus familiaris}
Length = 38
Score = 41.2 bits (97), Expect = 1e-05
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 445 GWLSDEPKLIPDPSAVKPADW 465
G DEPK IPDP+A KP DW
Sbjct: 1 GSHMDEPKFIPDPNAEKPDDW 21
Score = 37.3 bits (87), Expect = 2e-04
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 16/49 (32%)
Query: 411 DEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDG-WLSDEPKLIPDPS 458
DE + IPDP KP+DW+ED DG W E I +P+
Sbjct: 5 DEPKFIPDPNAEKPDDWNEDM------------DGEW---EAPRISNPA 38
Score = 33.1 bits (76), Expect = 0.009
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 37 DKEMDGEWEAPQIENP 52
+++MDGEWEAP+I NP
Sbjct: 22 NEDMDGEWEAPRISNP 37
Score = 26.6 bits (59), Expect = 1.9
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 396 PKEIVDVNDKKPATWDERE-------KIPDP 419
PK I D N +KP W+E +I +P
Sbjct: 7 PKFIPDPNAEKPDDWNEDMDGEWEAPRISNP 37
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.002
Identities = 56/387 (14%), Positives = 105/387 (27%), Gaps = 112/387 (28%)
Query: 122 EKKNRIFSRYLSPKIQKYINYQNVYFDNIIITESLDEAKQFAEATFKQKLSKRTND---- 177
K+ + +++ ++ NY+ + + I TE + + ++ + ND
Sbjct: 73 SKQEEMVQKFVEEVLRI--NYK--FLMSPIKTEQRQPSMM--TRMYIEQRDRLYNDNQVF 126
Query: 178 -KSFVSMVMKYTQENPWLW----AVYVIVTGVFVVLFYVLCCSGASKDWLGQWSIEPLKL 232
K VS + Y + L A V++ GV G+ K W+ K+
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL----------GSGKTWVALDVCLSYKV 176
Query: 233 HPLVGDSG--LVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLK--- 287
+ L K+ + L K + + + K +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 288 LLTEGPALQDLTAFND-KTPYTI-MFGPDKCGTDDKVHFIIRHRNPLN--GSITEKHHKA 343
LL P L + + F C K+ R + + + T H
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNL-SC----KILLTTRFKQVTDFLSAATTTHISL 291
Query: 344 IKPSVNLYSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEIVDVN 403
S+ L +E L L + L P+E++ N
Sbjct: 292 DHHSMTLTPDEVKSLLLKYL--------------DCRPQDL-----------PREVLTTN 326
Query: 404 -----------DKKPATWD-----EREKIP----------DPEVTK---------PED-- 426
ATWD +K+ +P + P
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 427 ---------WDEDEPYEIEDV--EAHK 442
W + ++ V + HK
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHK 413
Score = 34.1 bits (77), Expect = 0.11
Identities = 39/311 (12%), Positives = 86/311 (27%), Gaps = 78/311 (25%)
Query: 99 PEYYHDAEPFKLFPIVSTLQE-----------QVEKKNRIFS---RYLSPK-IQKYINYQ 143
P P +L I ++++ +K I L P +K +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM--FD 376
Query: 144 N--VYFDNIIITESL----------DEAKQFAEATFKQKLSKRTNDKSFVS---MVMKYT 188
V+ + I L + K L ++ +S +S + ++
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 189 QENPWLWAVY-VIVTGVFVVLFYVLCCSGASKDWLGQWSIEPLKLHPLVGDSGLVQKSKA 247
+ +A++ IV + + +L Q+ + H L
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTF--DSDDLIPPYLDQYFYSHIGHH-------LKNIEHP 487
Query: 248 KHHAISAN--LDKPFIFNKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKT 305
+ + LD F+ K+ +HD A+ + LQ L +
Sbjct: 488 ERMTLFRMVFLDFRFLEQKI------------RHD-STAWNASGSILNTLQQLKFYKP-- 532
Query: 306 PYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHKAIKPSVNLYSNESPHLYTLVLYP 365
+I + + K NL ++ L + L
Sbjct: 533 ------------------YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
Query: 366 DNKYAVYIDNE 376
+++ ++ +
Sbjct: 575 EDEA-IFEEAH 584
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.008
Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 18/100 (18%)
Query: 92 APRMIPNPEYYHDAE------PFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYINYQNV 145
P P D+ P + I + QEQV+ + +L Q I+ N
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 146 YFDNIIIT---ESLDE-----AKQFAEATFKQ---KLSKR 174
N++++ +SL K A + Q S+R
Sbjct: 374 A-KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Score = 30.4 bits (68), Expect = 1.5
Identities = 61/385 (15%), Positives = 106/385 (27%), Gaps = 154/385 (40%)
Query: 90 KW--APRMIPNPEYYHDAEPFKLFPIVSTLQEQVEKKNRIFSRYL-SPKIQKYINYQNVY 146
+W P P+ +Y P P++ +Q + Y+ + K+ + +
Sbjct: 217 EWLENPSNTPDKDYLLSI-PIS-CPLIGVIQ---------LAHYVVTAKLLGF-TPGEL- 263
Query: 147 FDNI---------IITESLDEAKQFAEATFKQKLSKRTNDKSFVSMVMKYTQENPWLWAV 197
+ ++T A AE + +SF V K
Sbjct: 264 RSYLKGATGHSQGLVT-----AVAIAETD---------SWESFFVSVRKAIT-------- 301
Query: 198 YVIVTGVFVVLFYVLCCSGA-SKDWLGQWSIEPLKLH-----------PLVGDSGLVQKS 245
VLF++ G + S+ P L P++ S L Q+
Sbjct: 302 ---------VLFFI----GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 246 KAKHHAISANLDKPFIFNK-VPFVIQYEVMFQDKHDCGGAYLKL--------LTEGPALQ 296
+ ++K N +P K + L ++ GP Q
Sbjct: 349 VQDY------VNK---TNSHLP---------AGKQ----VEISLVNGAKNLVVS-GPP-Q 384
Query: 297 DLTAFND-----KTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGS----ITEKHHKAIKPS 347
L N K P G D+ ++ F R + + H
Sbjct: 385 SLYGLNLTLRKAKAPS----GLDQS----RIPF--SERKLKFSNRFLPVASPFH------ 428
Query: 348 VNLYSNESPHL---YTLVLYPDNKYAVYID-NELNI------EGHLLDEGTFNPPINPPK 397
S L L+ K V + ++ I +G L + I+
Sbjct: 429 -------SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV--LSGSISE-- 477
Query: 398 EIVDVNDKKPATWDEREKIPDPEVT 422
IVD + P W E + T
Sbjct: 478 RIVDCIIRLPVKW---ETTTQFKAT 499
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.24
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 338 EKHH-KAIKPSVNLYSNES-PHL 358
EK K ++ S+ LY+++S P L
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL 40
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase,
hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A
Length = 1032
Score = 30.3 bits (68), Expect = 1.7
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 346 PSVNLYSNESPHLYTLVL 363
+ ++ E+P LY L
Sbjct: 301 KAPEHWTAENPTLYKYQL 318
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel),
jelly-roll barrel, immunoglobulin, beta supersandwich,
hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP:
b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A
1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A*
1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A*
3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ...
Length = 1023
Score = 30.2 bits (68), Expect = 1.7
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 346 PSVNLYSNESPHLYTLVL 363
+ L+S E P+LY V+
Sbjct: 296 ENPKLWSAEIPNLYRAVV 313
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II
(PSI-II), glycosyl hydrolase family 2, jelly-roll fold;
2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB:
3dec_A
Length = 1010
Score = 29.8 bits (67), Expect = 2.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 346 PSVNLYSNESPHLYTLVL 363
V ++ E P+LYTLVL
Sbjct: 299 AEVKAWNAEHPNLYTLVL 316
>2eab_A Alpha-fucosidase; glycoside hydrolase; 1.12A {Bifidobacterium
bifidum} PDB: 2eac_A* 2ead_A* 2eae_A*
Length = 899
Score = 29.6 bits (65), Expect = 2.6
Identities = 14/119 (11%), Positives = 36/119 (30%), Gaps = 9/119 (7%)
Query: 1 MSENVYFDNIIITESLDEAKQFAEATFKQKLSKRTNDKEMDGEWEAPQIENPLCVDAPGC 60
++ +++ ++ + L++A + A+A W ++ DA
Sbjct: 572 GTDGNTYESSLVWQMLNDAIEAAKAKGDPDGLVGNTTDCSADNWAKN--DSGNFTDANAN 629
Query: 61 GPWTVPLIKNPKFK-------GKWSPPMINNPNYNGKWAPRMIPNPEYYHDAEPFKLFP 112
W+ + +W +G + ++ H + LFP
Sbjct: 630 RSWSCAKSLLKPIEVGDSGQIKEWYFEGALGKKKDGSTISGYQADNQHRHMSHLLGLFP 688
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.9 bits (64), Expect = 2.7
Identities = 9/36 (25%), Positives = 11/36 (30%), Gaps = 3/36 (8%)
Query: 395 PPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDED 430
PP EI+ + D D K WD
Sbjct: 179 PPNEILFSENND---MDNNNDGVDELNKKCTFWDAI 211
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel,
hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1
b.18.1.5 b.30.5.1 c.1.8.3
Length = 1024
Score = 29.5 bits (66), Expect = 3.2
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 346 PSVNLYSNESPHLYTLVL 363
+V +S E P LY +
Sbjct: 281 ENVEPWSAEVPRLYEASV 298
>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide,
amylase, starch, carbohydrate; 1.65A {Bacillus
acidopullulyticus}
Length = 921
Score = 29.4 bits (66), Expect = 3.5
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 394 NPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEP 432
+ VD + + R I D + T P W D
Sbjct: 386 GTTQTAVDPYARAISVNATRGMIVDLKATDPAGWQGDHE 424
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene
cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate;
HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Length = 764
Score = 28.3 bits (62), Expect = 6.9
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 156 LDEAKQFAEATFKQKLSKRTNDKSFVSMVMKYTQENPWLW 195
+D+A++FAE ++ L+ + + + + ++Y E PW
Sbjct: 359 MDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHM 398
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.136 0.428
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,466,560
Number of extensions: 455413
Number of successful extensions: 1187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1127
Number of HSP's successfully gapped: 51
Length of query: 465
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 368
Effective length of database: 3,993,456
Effective search space: 1469591808
Effective search space used: 1469591808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.0 bits)