RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7421
(465 letters)
>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis
familiaris) [TaxId: 9615]}
Length = 249
Score = 224 bits (571), Expect = 3e-71
Identities = 91/211 (43%), Positives = 126/211 (59%), Gaps = 11/211 (5%)
Query: 223 GQWSIEPLKLHPLVGDSGLVQKSKAKHHAISANLDKPFIFNKVPFVIQYEVMFQDKHDCG 282
G+W ++ +K L GD GLV S+AKHHAISA L+KPF+F+ P ++QYEV FQ+ +CG
Sbjct: 43 GKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECG 102
Query: 283 GAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVHFIIRHRNPLNGSITEKHHK 342
GAY+KLL++ P L +L F+DKTPYTIMFGPDKCG D K+HFI RH+NP G EKH
Sbjct: 103 GAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKH-- 159
Query: 343 AIKPSVNL---YSNESPHLYTLVLYPDNKYAVYIDNELNIEGHLLDEGTFNPPINPPKEI 399
A +P +L ++++ HLYTL+L PDN + + +D + G+L + P I
Sbjct: 160 AKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLEP-----FKMTPFSAI 214
Query: 400 VDVNDKKPATWDEREKIPDPEVTKPEDWDED 430
+ I + +DW D
Sbjct: 215 GLELWSMTSDIFFDNFIVCGDRRVVDDWAND 245
>d1jhna3 b.104.1.1 (A:270-411) Calnexin {Dog (Canis familiaris)
[TaxId: 9615]}
Length = 142
Score = 108 bits (272), Expect = 5e-29
Identities = 46/74 (62%), Positives = 55/74 (74%)
Query: 392 PINPPKEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEP 451
P+NP +EI D D+KP WDER KIPDP+ KP+DW+ED P +I D EA KPDGWL DEP
Sbjct: 1 PVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEP 60
Query: 452 KLIPDPSAVKPADW 465
+ +PDP A KP DW
Sbjct: 61 EYVPDPDAEKPEDW 74
Score = 106 bits (266), Expect = 4e-28
Identities = 45/68 (66%), Positives = 53/68 (77%)
Query: 37 DKEMDGEWEAPQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMI 96
D++MDGEWEAPQI NP C APGCG W P+I NP +KGKW PPMI+NPNY G W PR I
Sbjct: 75 DEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKPRKI 134
Query: 97 PNPEYYHD 104
PNP+++ D
Sbjct: 135 PNPDFFED 142
Score = 49.5 bits (118), Expect = 5e-08
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 394 NPPKEIVDVNDKKPATW--DEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSD-- 449
+ P +I D KP W DE E +PDP+ KPEDWDED E E + P +
Sbjct: 39 DAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGC 98
Query: 450 ---EPKLIPDP 457
+ +I +P
Sbjct: 99 GVWQRPMIDNP 109
>d1k9ca_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 74
Score = 70.1 bits (172), Expect = 6e-16
Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 397 KEIVDVNDKKPATWDEREKIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSD-----EP 451
K+I D + KP WDER KI DP +KPEDW D+P I D +A KP+ W + EP
Sbjct: 2 KKIKDPDAAKPEDWDERAKIDDPTDSKPEDW--DKPEHIPDPDAKKPEDWDEEMDGEWEP 59
Query: 452 KLIPDP 457
+I +P
Sbjct: 60 PVIQNP 65
Score = 67.8 bits (166), Expect = 4e-15
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 415 KIPDPEVTKPEDWDEDEPYEIEDVEAHKPDGWLSDEPKLIPDPSAVKPADW 465
KI DP+ KPEDWDE +I+D KP+ W D+P+ IPDP A KP DW
Sbjct: 3 KIKDPDAAKPEDWDERA--KIDDPTDSKPEDW--DKPEHIPDPDAKKPEDW 49
Score = 39.7 bits (93), Expect = 3e-05
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 70 NPKFKGKWSPPMINNPNYNGKWAPR 94
+ + G+W PP+I NP Y G+W PR
Sbjct: 50 DEEMDGEWEPPVIQNPEYKGEWKPR 74
Score = 35.5 bits (82), Expect = 0.001
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 56 DAPGCGPWTVPLIKNPKFKGKWSP 79
D G W P+I+NP++KG+W P
Sbjct: 50 DEEMDGEWEPPVIQNPEYKGEWKP 73
Score = 28.2 bits (63), Expect = 0.39
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 84 NPNYNGKWAPRMIPNPEY 101
+ +G+W P +I NPEY
Sbjct: 50 DEEMDGEWEPPVIQNPEY 67
Score = 26.6 bits (59), Expect = 1.5
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 452 KLIPDPSAVKPADW 465
K I DP A KP DW
Sbjct: 2 KKIKDPDAAKPEDW 15
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 37
Score = 35.0 bits (81), Expect = 6e-04
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 37 DKEMDGEWEAPQIENPLC 54
D+EMDGEWE P I+NP
Sbjct: 18 DEEMDGEWEPPVIQNPEY 35
Score = 33.5 bits (77), Expect = 0.003
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 412 EREKIPDPEVTKPEDWDEDE 431
+ E IPDP+ KPEDWDE+
Sbjct: 2 KPEHIPDPDAKKPEDWDEEM 21
Score = 32.7 bits (75), Expect = 0.004
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 450 EPKLIPDPSAVKPADW 465
+P+ IPDP A KP DW
Sbjct: 2 KPEHIPDPDAKKPEDW 17
Score = 27.3 bits (61), Expect = 0.35
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 75 GKWSPPMINNPNYNG 89
G+W PP+I NP Y G
Sbjct: 23 GEWEPPVIQNPEYKG 37
Score = 26.5 bits (59), Expect = 0.79
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 7/32 (21%)
Query: 396 PKEIVDVNDKKPATWDERE-------KIPDPE 420
P+ I D + KKP WDE I +PE
Sbjct: 3 PEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPE 34
Score = 26.2 bits (58), Expect = 1.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 84 NPNYNGKWAPRMIPNPEY 101
+ +G+W P +I NPEY
Sbjct: 18 DEEMDGEWEPPVIQNPEY 35
>d1w6na_ b.29.1.3 (A:) Galectin-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 134
Score = 28.7 bits (64), Expect = 0.82
Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 1/54 (1%)
Query: 59 GCGPWTVPLIKNPKFKGKWSPPMI-NNPNYNGKWAPRMIPNPEYYHDAEPFKLF 111
G + L NP+F I N +G W + ++
Sbjct: 35 GKDSNNLCLHFNPRFNAHGDANTIVCNSKDDGAWGTEQREAVFPFQPGSVAEVC 88
>d2pbza2 d.142.1.9 (A:100-312) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 213
Score = 28.9 bits (65), Expect = 0.91
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 410 WDEREKIPDPEVTKPEDWDEDEPY 433
E IP EV +PED DE Y
Sbjct: 6 ALEGAGIPRVEVVEPEDAKPDELY 29
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
transmembrane domain M {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 472
Score = 28.9 bits (64), Expect = 1.5
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 171 LSKRTNDKSFVSMVMKYTQENPWLWAVYVIVTGVFVVLFYV 211
L+ + ++S + M N WL + + ++ YV
Sbjct: 391 LNSLSENQSLMRMPPW---VNIWLLGSICLSMSLHFLILYV 428
>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 157
Score = 28.0 bits (61), Expect = 1.6
Identities = 10/94 (10%), Positives = 22/94 (23%)
Query: 47 PQIENPLCVDAPGCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYHDAE 106
+ N G V + I + + A
Sbjct: 59 THLPNLRVQVGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHIAGVDTFFVAT 118
Query: 107 PFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKYI 140
+ + S+L ++V S L + + +
Sbjct: 119 APRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRL 152
>d2igda_ d.15.7.1 (A:) Immunoglobulin-binding protein G, different
constituent domains {Streptococcus sp., group G [TaxId:
1306]}
Length = 61
Score = 26.1 bits (57), Expect = 2.0
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 11 IITESLDEAKQFAEATFKQKLSKRTNDKEMDGEW 44
T+++D AE FKQ ND +DG W
Sbjct: 21 TTTKAVDAET--AEKAFKQYA----NDNGVDGVW 48
>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Length = 189
Score = 27.8 bits (60), Expect = 2.3
Identities = 12/67 (17%), Positives = 24/67 (35%)
Query: 80 PMINNPNYNGKWAPRMIPNPEYYHDAEPFKLFPIVSTLQEQVEKKNRIFSRYLSPKIQKY 139
++N + G P Y F + ST+ + K + + K++KY
Sbjct: 121 ELLNLIQFIGVKRPGFHVETPYPLLFADVPEFEVSSTMIRERFKSKKPTDYLIPDKVKKY 180
Query: 140 INYQNVY 146
+ +Y
Sbjct: 181 VEENGLY 187
>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Escherichia coli [TaxId: 562]}
Length = 213
Score = 27.8 bits (60), Expect = 2.7
Identities = 10/75 (13%), Positives = 20/75 (26%)
Query: 72 KFKGKWSPPMINNPNYNGKWAPRMIPNPEYYHDAEPFKLFPIVSTLQEQVEKKNRIFSRY 131
+ ++ + P F I +T+ + +
Sbjct: 138 PLEMAQPQYQQWLEDHLTHNPEDLHLQPAGKIYLAETPWFNISATIIRERLQNGESCEDL 197
Query: 132 LSPKIQKYINYQNVY 146
L + YIN Q +Y
Sbjct: 198 LPEPVLTYINQQGLY 212
>d1mhxa_ d.15.7.1 (A:) Immunoglobulin-binding protein G, different
constituent domains {Streptococcus sp., group G [TaxId:
1306]}
Length = 65
Score = 25.3 bits (55), Expect = 3.6
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 6/34 (17%)
Query: 11 IITESLDEAKQFAEATFKQKLSKRTNDKEMDGEW 44
+ TE++D A AE FKQ ND +DGEW
Sbjct: 25 VTTEAVDAAT--AEKVFKQYA----NDNGVDGEW 52
>d1a78a_ b.29.1.3 (A:) Galectin-1 {Toad (Bufo arenarum) [TaxId:
38577]}
Length = 134
Score = 26.4 bits (58), Expect = 3.8
Identities = 7/53 (13%), Positives = 10/53 (18%), Gaps = 1/53 (1%)
Query: 59 GCGPWTVPLIKNPKFKGKWSPPMI-NNPNYNGKWAPRMIPNPEYYHDAEPFKL 110
G L N +F I N W + +
Sbjct: 36 GEDASNFLLHFNARFDLHGDVNKIVCNSKEADAWGSEQREEVFPFQQGAEVMV 88
>d1yq2a2 b.1.4.1 (A:220-312) beta-Galactosidase, domains 2 and 4
{Arthrobacter sp. c2-2 [TaxId: 192168]}
Length = 93
Score = 25.8 bits (56), Expect = 4.2
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 346 PSVNLYSNESPHLYTLVL 363
+V +S E P LY +
Sbjct: 61 ENVEPWSAEVPRLYEASV 78
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 26.1 bits (56), Expect = 8.2
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 1 MSENVYFDNIIITESLDEAKQFAEATFKQKLSKR 34
E FD +II + LD+A + +++ K
Sbjct: 155 SKEPGLFDLVIINDDLDKAYATLKQALSEEIKKA 188
>d1hlca_ b.29.1.3 (A:) S-lac lectin, L-14-II {Human (Homo sapiens)
[TaxId: 9606]}
Length = 129
Score = 25.2 bits (55), Expect = 9.7
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 59 GCGPWTVPLIKNPKFKGKWSPPMINNPNYNGKWAPRMIPNPEYYHDAEPFKL 110
G G + L NP+F ++ N W + + K
Sbjct: 33 GQGTDKLNLHFNPRFSEST---IVCNSLDGSNWGQEQREDHLCFSPGSEVKF 81
>d2nt0a2 c.1.8.3 (A:78-431) Glucosylceramidase, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 354
Score = 26.2 bits (57), Expect = 9.9
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 77 WSPP--MINNPNYNGKWAPRMIPNPEYYHD 104
W+ P + N NGK + + P Y+
Sbjct: 102 WTSPTWLKTNGAVNGKGSLKGQPGDIYHQT 131
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.136 0.428
Gapped
Lambda K H
0.267 0.0676 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,883,277
Number of extensions: 94069
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 43
Length of query: 465
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 377
Effective length of database: 1,199,356
Effective search space: 452157212
Effective search space used: 452157212
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)