BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7425
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AV1|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.2
Length = 139
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 119/121 (98%), Positives = 119/121 (98%)
Query: 43 SSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS 102
S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS
Sbjct: 2 SHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS 61
Query: 103 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQ 162
TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR
Sbjct: 62 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 121
Query: 163 T 163
T
Sbjct: 122 T 122
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATGGVKKP
Sbjct: 8 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 42
>pdb|2HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein
pdb|1EQZ|C Chain C, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|G Chain G, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|C Chain C, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|G Chain G, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|C Chain C, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|G Chain G, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|C Chain C, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|G Chain G, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2F8N|A Chain A, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|2F8N|E Chain E, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 136
Score = 240 bits (612), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 118/119 (99%), Positives = 118/119 (99%)
Query: 45 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 104
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 105 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR T
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVT 119
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATGGVKKP
Sbjct: 5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 39
>pdb|3AFA|A Chain A, The Human Nucleosome Structure
pdb|3AFA|E Chain E, The Human Nucleosome Structure
pdb|3AZI|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 139
Score = 239 bits (611), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 118/121 (97%), Positives = 118/121 (97%)
Query: 43 SSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS 102
S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS
Sbjct: 2 SHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS 61
Query: 103 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQ 162
TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKR
Sbjct: 62 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRV 121
Query: 163 T 163
T
Sbjct: 122 T 122
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATGGVKKP
Sbjct: 8 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 42
>pdb|3AZH|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
Length = 139
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 118/121 (97%), Positives = 118/121 (97%)
Query: 43 SSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS 102
S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS
Sbjct: 2 SHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS 61
Query: 103 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQ 162
TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKR
Sbjct: 62 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRV 121
Query: 163 T 163
T
Sbjct: 122 T 122
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATGGVKKP
Sbjct: 8 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 42
>pdb|2CV5|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
pdb|1U35|A Chain A, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|E Chain E, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
Length = 136
Score = 238 bits (608), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/119 (98%), Positives = 117/119 (98%)
Query: 45 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 104
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 105 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKR T
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVT 119
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATGGVKKP
Sbjct: 5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 39
>pdb|3AZG|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
Length = 139
Score = 238 bits (607), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/121 (96%), Positives = 118/121 (97%)
Query: 43 SSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS 102
S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS
Sbjct: 2 SHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS 61
Query: 103 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQ 162
TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHA+R
Sbjct: 62 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAQRV 121
Query: 163 T 163
T
Sbjct: 122 T 122
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATGGVKKP
Sbjct: 8 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 42
>pdb|3AZF|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
Length = 139
Score = 238 bits (607), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/121 (96%), Positives = 118/121 (97%)
Query: 43 SSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS 102
S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS
Sbjct: 2 SHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS 61
Query: 103 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQ 162
TELLIRKLPFQRLVREIAQDF+TDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKR
Sbjct: 62 TELLIRKLPFQRLVREIAQDFQTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRV 121
Query: 163 T 163
T
Sbjct: 122 T 122
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATGGVKKP
Sbjct: 8 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 42
>pdb|3AZE|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
Length = 139
Score = 238 bits (607), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/121 (96%), Positives = 118/121 (97%)
Query: 43 SSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS 102
S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS
Sbjct: 2 SHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS 61
Query: 103 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQ 162
TELLIR+LPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKR
Sbjct: 62 TELLIRQLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRV 121
Query: 163 T 163
T
Sbjct: 122 T 122
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATGGVKKP
Sbjct: 8 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 42
>pdb|3AYW|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
Length = 139
Score = 238 bits (607), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/121 (96%), Positives = 118/121 (97%)
Query: 43 SSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS 102
S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQ+S
Sbjct: 2 SHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQQS 61
Query: 103 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQ 162
TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKR
Sbjct: 62 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRV 121
Query: 163 T 163
T
Sbjct: 122 T 122
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATGGVKKP
Sbjct: 8 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 42
>pdb|3LEL|A Chain A, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|E Chain E, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|K Chain K, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|O Chain O, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
Length = 136
Score = 238 bits (607), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/119 (98%), Positives = 117/119 (98%)
Query: 45 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 104
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 105 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR T
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVT 119
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATGGVKKP
Sbjct: 5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 39
>pdb|2IO5|B Chain B, Crystal Structure Of The Cia- Histone H3-H4 Complex
pdb|2NQB|A Chain A, Drosophila Nucleosome Structure
pdb|2NQB|E Chain E, Drosophila Nucleosome Structure
pdb|2PYO|A Chain A, Drosophila Nucleosome Core
pdb|2PYO|E Chain E, Drosophila Nucleosome Core
pdb|3C9K|C Chain C, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|G Chain G, Model Of Histone Octamer Tubular Crystals
Length = 135
Score = 237 bits (605), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 117/118 (99%), Positives = 117/118 (99%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 105
ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR T
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVT 118
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATGGVKKP
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 38
>pdb|1KX3|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|A Chain A, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|E Chain E, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1S32|A Chain A, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|E Chain E, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1ZBB|A Chain A, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|E Chain E, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|AA Chain a, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|EE Chain e, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|A Chain A, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|E Chain E, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2NZD|A Chain A, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|E Chain E, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|A Chain A, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|E Chain E, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|A Chain A, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|E Chain E, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3C1B|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3KUY|A Chain A, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|E Chain E, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3LJA|A Chain A, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|E Chain E, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3MGP|A Chain A, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|E Chain E, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|A Chain A, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|E Chain E, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|A Chain A, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|E Chain E, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|A Chain A, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|E Chain E, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MVD|A Chain A, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|E Chain E, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3LZ0|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3O62|A Chain A, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|E Chain E, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3MNN|A Chain A, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|E Chain E, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3TU4|A Chain A, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|E Chain E, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|A Chain A, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|E Chain E, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|A Chain A, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|E Chain E, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|A Chain A, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|E Chain E, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|A Chain A, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|E Chain E, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|A Chain A, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|E Chain E, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 135
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 116/118 (98%), Positives = 116/118 (98%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 105
ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR T
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVT 118
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATGGVKKP
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 38
>pdb|1F66|A Chain A, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|E Chain E, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 136
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 116/119 (97%), Positives = 116/119 (97%)
Query: 45 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 104
MARTKQTARKSTGGKAPRKQLATKAARKSAPATG VKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGEVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 105 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR T
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVT 119
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/35 (94%), Positives = 34/35 (97%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATG VKKP
Sbjct: 5 KQTARKSTGGKAPRKQLATKAARKSAPATGEVKKP 39
>pdb|3A6N|A Chain A, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|E Chain E, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
Length = 139
Score = 234 bits (598), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 114/121 (94%), Positives = 116/121 (95%)
Query: 43 SSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS 102
S MARTKQTARKSTGGKAPRKQLATK ARKSAPATGGVKKPHRYRPGTVALREIRRYQKS
Sbjct: 2 SHMARTKQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKS 61
Query: 103 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQ 162
TELLIRKLPFQRL+REIAQDFKTDLRFQSSAVMALQEA E+YLVGLFEDTNLC IHAKR
Sbjct: 62 TELLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRV 121
Query: 163 T 163
T
Sbjct: 122 T 122
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/35 (94%), Positives = 34/35 (97%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATK ARKSAPATGGVKKP
Sbjct: 8 KQTARKSTGGKAPRKQLATKVARKSAPATGGVKKP 42
>pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.3
Length = 139
Score = 234 bits (598), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 115/121 (95%), Positives = 118/121 (97%)
Query: 43 SSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS 102
S MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKS
Sbjct: 2 SHMARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKS 61
Query: 103 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQ 162
TELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKR
Sbjct: 62 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRV 121
Query: 163 T 163
T
Sbjct: 122 T 122
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/35 (94%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAP+TGGVKKP
Sbjct: 8 KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKP 42
>pdb|1ZLA|A Chain A, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|E Chain E, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 135
Score = 234 bits (597), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 120/135 (88%), Positives = 122/135 (90%), Gaps = 8/135 (5%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 105
ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR---- 161
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVHIM 120
Query: 162 ----QTARKSTGGKA 172
Q AR+ G +A
Sbjct: 121 PKDIQLARRIRGERA 135
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATGGVKKP
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 38
>pdb|3KXB|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
Length = 135
Score = 234 bits (597), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 115/118 (97%), Positives = 116/118 (98%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 105
ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQ+STEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQESTEL 60
Query: 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR T
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVT 118
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATGGVKKP
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 38
>pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In
Complex With Its Chaperone Daxx
Length = 136
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 114/119 (95%), Positives = 117/119 (98%)
Query: 45 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 104
MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 105 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKR T
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVT 119
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/35 (94%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAP+TGGVKKP
Sbjct: 5 KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKP 39
>pdb|1M18|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
Length = 135
Score = 231 bits (588), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 113/118 (95%), Positives = 114/118 (96%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 105
ARTKQTARKSTGGKAPRKQL TKAA+K APATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR T
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVT 118
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/35 (88%), Positives = 33/35 (94%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQL TKAA+K APATGGVKKP
Sbjct: 4 KQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKP 38
>pdb|1P3B|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 230 bits (587), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 114/118 (96%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 105
ARTKQTARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR T
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVT 118
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 33/35 (94%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATG KKP
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGESKKP 38
>pdb|1P3K|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/135 (87%), Positives = 120/135 (88%), Gaps = 8/135 (5%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 105
ARTKQTARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR---- 161
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVAIM 120
Query: 162 ----QTARKSTGGKA 172
Q AR+ G +A
Sbjct: 121 PKDIQLARRIRGERA 135
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 33/35 (94%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATG KKP
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGESKKP 38
>pdb|1P3M|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 229 bits (585), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/135 (87%), Positives = 120/135 (88%), Gaps = 8/135 (5%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 105
ARTKQTARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR---- 161
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVIIM 120
Query: 162 ----QTARKSTGGKA 172
Q AR+ G +A
Sbjct: 121 PKDIQLARRIRGERA 135
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 33/35 (94%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATG KKP
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGESKKP 38
>pdb|3C1C|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 135
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/118 (96%), Positives = 114/118 (96%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 105
ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LIRKLPFQRLVREIAQDF TDLRFQSSAVMALQEASEAYLV LFEDTNL AIHAKR T
Sbjct: 61 LIRKLPFQRLVREIAQDFXTDLRFQSSAVMALQEASEAYLVALFEDTNLAAIHAKRVT 118
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATGGVKKP
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 38
>pdb|1P3L|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/135 (87%), Positives = 120/135 (88%), Gaps = 8/135 (5%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 105
ARTKQTARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR---- 161
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVHIM 120
Query: 162 ----QTARKSTGGKA 172
Q AR+ G +A
Sbjct: 121 PKDIQLARRIRGERA 135
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 33/35 (94%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATG KKP
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGESKKP 38
>pdb|1P34|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 228 bits (581), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 112/115 (97%), Positives = 112/115 (97%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 105
ARTKQTARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK 160
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAK
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAK 115
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 33/35 (94%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATG KKP
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGESKKP 38
>pdb|1P3A|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 228 bits (581), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 113/118 (95%), Positives = 113/118 (95%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 105
ARTKQTARKSTGGKAPRKQLATKAARKSAPATG KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAK T
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKHVT 118
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 33/35 (94%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATG KKP
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPATGESKKP 38
>pdb|4H9O|A Chain A, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4
Length = 135
Score = 227 bits (579), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 110/118 (93%), Positives = 115/118 (97%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 105
ARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LIRKLPFQRLVREIAQDFKTDLRFQS+A+MALQEA+EA+LV LFEDTNLC IHAKR T
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSAAIMALQEAAEAFLVALFEDTNLCTIHAKRVT 118
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/35 (94%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAP+TGGVKKP
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKP 38
>pdb|4H9N|A Chain A, Complex Structure 1 Of DaxxH3.3(SUB5)H4
pdb|4H9Q|A Chain A, Complex Structure 4 Of Daxx(E225a)H3.3(SUB5)H4
Length = 135
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/118 (92%), Positives = 114/118 (96%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 105
ARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EA+LV LFEDTNLC IHAKR T
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAFLVALFEDTNLCTIHAKRVT 118
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/35 (94%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAP+TGGVKKP
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKP 38
>pdb|4H9S|A Chain A, Complex Structure 6 Of DaxxH3.3(SUB7)H4
pdb|4H9S|B Chain B, Complex Structure 6 Of DaxxH3.3(SUB7)H4
Length = 135
Score = 220 bits (561), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 107/118 (90%), Positives = 113/118 (95%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 105
ARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LIRKLPFQRLVREI QDFKTDLR+QS+A+ ALQEA+EA+LV LFEDTNLC IHAKR T
Sbjct: 61 LIRKLPFQRLVREICQDFKTDLRWQSAAIGALQEAAEAFLVALFEDTNLCTIHAKRVT 118
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/35 (94%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAP+TGGVKKP
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKP 38
>pdb|1ID3|A Chain A, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|E Chain E, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 135
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 108/121 (89%), Positives = 115/121 (95%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 105
ARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIRR+QKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTEL 60
Query: 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTAR 165
LIRKLPFQRLVREIAQDFKTDLRFQSSA+ ALQE+ EAYLV LFEDTNL AIHAKR T +
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQ 120
Query: 166 K 166
K
Sbjct: 121 K 121
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/35 (91%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKP
Sbjct: 4 KQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKP 38
>pdb|2NQB|C Chain C, Drosophila Nucleosome Structure
pdb|2NQB|G Chain G, Drosophila Nucleosome Structure
Length = 123
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH
Sbjct: 22 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 81
Query: 290 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKKA 331
LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKKA
Sbjct: 82 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKKA 123
>pdb|4H9P|A Chain A, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4
pdb|4H9R|A Chain A, Complex Structure 5 Of Daxx(E225a)H3.3(SUB5,G90A)H4
Length = 135
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/118 (92%), Positives = 114/118 (96%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 105
ARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EA+LV LFEDTNLC IHAKR T
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAFLVALFEDTNLCTIHAKRVT 118
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/35 (94%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAP+TGGVKKP
Sbjct: 4 KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKP 38
>pdb|2PYO|C Chain C, Drosophila Nucleosome Core
pdb|2PYO|G Chain G, Drosophila Nucleosome Core
Length = 120
Score = 203 bits (517), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH
Sbjct: 22 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 81
Query: 290 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 328
LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE
Sbjct: 82 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 120
>pdb|1AOI|A Chain A, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|E Chain E, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 116
Score = 200 bits (509), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 97/99 (97%), Positives = 97/99 (97%)
Query: 65 LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 124
LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK
Sbjct: 1 LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 60
Query: 125 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
TDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR T
Sbjct: 61 TDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVT 99
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/19 (100%), Positives = 19/19 (100%)
Query: 177 LATKAARKSAPATGGVKKP 195
LATKAARKSAPATGGVKKP
Sbjct: 1 LATKAARKSAPATGGVKKP 19
>pdb|3C1B|C Chain C, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|G Chain G, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|C Chain C, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|G Chain G, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 129
Score = 194 bits (493), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 91/99 (91%), Positives = 96/99 (96%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 290 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 328
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+VLLPKKTE
Sbjct: 83 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTE 121
>pdb|1EQZ|A Chain A, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|E Chain E, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|A Chain A, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|E Chain E, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|A Chain A, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|E Chain E, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|A Chain A, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|E Chain E, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
Length = 129
Score = 194 bits (493), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 92/99 (92%), Positives = 96/99 (96%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 83
Query: 290 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 328
LQLAIRNDEELNKLL VTIAQGGVLPNIQAVLLPKKT+
Sbjct: 84 LQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTD 122
>pdb|1ZBB|C Chain C, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|G Chain G, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|CC Chain c, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|GG Chain g, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|C Chain C, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|G Chain G, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|3LJA|C Chain C, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|G Chain G, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3KXB|C Chain C, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|G Chain G, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3MVD|C Chain C, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|G Chain G, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3TU4|C Chain C, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|G Chain G, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|C Chain C, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|G Chain G, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|C Chain C, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|G Chain G, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|C Chain C, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|G Chain G, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|C Chain C, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|G Chain G, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|C Chain C, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|G Chain G, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 129
Score = 194 bits (493), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 91/99 (91%), Positives = 96/99 (96%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 290 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 328
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+VLLPKKTE
Sbjct: 83 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTE 121
>pdb|2HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein
pdb|3C9K|A Chain A, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|E Chain E, Model Of Histone Octamer Tubular Crystals
Length = 128
Score = 194 bits (493), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 92/99 (92%), Positives = 96/99 (96%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 290 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 328
LQLAIRNDEELNKLL VTIAQGGVLPNIQAVLLPKKT+
Sbjct: 83 LQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTD 121
>pdb|1M18|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1P34|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 129
Score = 194 bits (492), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 91/99 (91%), Positives = 96/99 (96%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 290 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 328
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+VLLPKKTE
Sbjct: 83 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTE 121
>pdb|3A6N|C Chain C, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|G Chain G, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3AFA|C Chain C, The Human Nucleosome Structure
pdb|3AFA|G Chain G, The Human Nucleosome Structure
pdb|3AV1|C Chain C, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|G Chain G, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV2|C Chain C, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|G Chain G, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AN2|C Chain C, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|G Chain G, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AYW|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AZE|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZF|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZG|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZH|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZI|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 133
Score = 194 bits (492), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 92/99 (92%), Positives = 96/99 (96%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
LQFPVGR+HRLLRKGNY+ERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 27 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 86
Query: 290 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 328
LQLAIRNDEELNKLL VTIAQGGVLPNIQAVLLPKKTE
Sbjct: 87 LQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 125
>pdb|2CV5|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Length = 130
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 92/99 (92%), Positives = 96/99 (96%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
LQFPVGR+HRLLRKGNY+ERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 24 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 83
Query: 290 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 328
LQLAIRNDEELNKLL VTIAQGGVLPNIQAVLLPKKTE
Sbjct: 84 LQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
>pdb|2F8N|K Chain K, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 149
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 92/99 (92%), Positives = 96/99 (96%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
LQFPVGR+HRLLRKGNY+ERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 43 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 102
Query: 290 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 328
LQLAIRNDEELNKLL VTIAQGGVLPNIQAVLLPKKTE
Sbjct: 103 LQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 141
>pdb|1ZLA|C Chain C, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|G Chain G, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 129
Score = 191 bits (484), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 89/99 (89%), Positives = 94/99 (94%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGN RDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNWERDNKKTRIIPRH 82
Query: 290 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 328
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+VLLPKKTE
Sbjct: 83 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTE 121
>pdb|3KWQ|C Chain C, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|G Chain G, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 107
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/98 (91%), Positives = 95/98 (96%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 10 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 69
Query: 290 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 327
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+VLLPKKT
Sbjct: 70 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKT 107
>pdb|1S32|C Chain C, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|G Chain G, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|2NZD|C Chain C, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|G Chain G, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3KUY|C Chain C, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|G Chain G, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3MGP|C Chain C, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|G Chain G, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|C Chain C, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|G Chain G, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|C Chain C, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|G Chain G, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|C Chain C, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|G Chain G, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3LZ0|C Chain C, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|G Chain G, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|C Chain C, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|G Chain G, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3MNN|C Chain C, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|G Chain G, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
Length = 119
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 89/97 (91%), Positives = 94/97 (96%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 290 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 326
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+VLLPKK
Sbjct: 83 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKK 119
>pdb|1AOI|C Chain C, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|G Chain G, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 116
Score = 187 bits (476), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 89/97 (91%), Positives = 94/97 (96%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 20 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 79
Query: 290 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 326
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+VLLPKK
Sbjct: 80 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKK 116
>pdb|1KX3|C Chain C, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|G Chain G, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|C Chain C, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|G Chain G, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|C Chain C, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|G Chain G, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|3B6F|C Chain C, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|G Chain G, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|C Chain C, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|G Chain G, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3LEL|C Chain C, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|G Chain G, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|M Chain M, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|Q Chain Q, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3O62|C Chain C, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|G Chain G, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
Length = 128
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 87/95 (91%), Positives = 92/95 (96%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 290 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLP 324
LQLA+RNDEELNKLL VTIAQGGVLPNIQ+VLLP
Sbjct: 83 LQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLP 117
>pdb|1ID3|C Chain C, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|G Chain G, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 131
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 83/100 (83%), Positives = 92/100 (92%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
L FPVGR+HRLLR+GNYA+R+G+GAPVYL AV+EYLAAE+LELAGNAARDNKKTRIIPRH
Sbjct: 24 LTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRH 83
Query: 290 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 329
LQLAIRND+ELNKLL VTIAQGGVLPNI LLPKK+ K
Sbjct: 84 LQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK 123
>pdb|1HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 95
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/87 (93%), Positives = 84/87 (96%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 9 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 68
Query: 290 LQLAIRNDEELNKLLSGVTIAQGGVLP 316
LQLAIRNDEELNKLL VTIAQGGVLP
Sbjct: 69 LQLAIRNDEELNKLLGKVTIAQGGVLP 95
>pdb|3KWQ|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 98
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/98 (83%), Positives = 85/98 (86%), Gaps = 8/98 (8%)
Query: 83 PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE 142
PHRYRPGTVALREIRRYQ+STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE
Sbjct: 1 PHRYRPGTVALREIRRYQESTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE 60
Query: 143 AYLVGLFEDTNLCAIHAKR--------QTARKSTGGKA 172
AYLV LFEDTNLCAIHAKR Q AR+ G +A
Sbjct: 61 AYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 98
>pdb|2XQL|A Chain A, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|C Chain C, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|E Chain E, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|G Chain G, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5).
pdb|2XQL|I Chain I, Fitting Of The H2a-H2b Histones In The Electron Microscopy
Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5)
Length = 91
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 77/83 (92%), Positives = 80/83 (96%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 9 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 68
Query: 290 LQLAIRNDEELNKLLSGVTIAQG 312
LQLAIRNDEELNKLL VTIAQG
Sbjct: 69 LQLAIRNDEELNKLLGKVTIAQG 91
>pdb|1HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 93
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 75/76 (98%), Positives = 75/76 (98%)
Query: 88 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 147
PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG
Sbjct: 1 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 60
Query: 148 LFEDTNLCAIHAKRQT 163
LFEDTNLCAIHAKR T
Sbjct: 61 LFEDTNLCAIHAKRVT 76
>pdb|1U35|C Chain C, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|G Chain G, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|2F8N|G Chain G, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 120
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/95 (68%), Positives = 77/95 (81%)
Query: 232 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQ 291
FPVGR+ R ++KG+ R+G GAPVY+AAV+EYL AE+LELA NAARDNKK R+ PRH+
Sbjct: 23 FPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHIL 82
Query: 292 LAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 326
LA+ NDEELN+LL GVTIA GGVLPNI LL KK
Sbjct: 83 LAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 117
>pdb|1F66|C Chain C, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|G Chain G, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 128
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/102 (61%), Positives = 76/102 (74%), Gaps = 2/102 (1%)
Query: 230 LQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 288
LQFPVGRIHR L+ + RVGA A VY AA++EYL AEVLELAGNA++D K RI PR
Sbjct: 26 LQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 85
Query: 289 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 330
HLQLAIR DEEL+ L+ TIA GGV+P+I L+ KK ++K
Sbjct: 86 HLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQK 126
>pdb|2HUE|B Chain B, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones H3
And H4
Length = 77
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/75 (80%), Positives = 62/75 (82%), Gaps = 8/75 (10%)
Query: 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR---- 161
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 62
Query: 162 ----QTARKSTGGKA 172
Q AR+ G +A
Sbjct: 63 PKDIQLARRIRGERA 77
>pdb|4EO5|B Chain B, Yeast Asf1 Bound To H3H4G94P MUTANT
Length = 76
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/75 (80%), Positives = 62/75 (82%), Gaps = 8/75 (10%)
Query: 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR---- 161
LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 2 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 61
Query: 162 ----QTARKSTGGKA 172
Q AR+ G +A
Sbjct: 62 PKDIQLARRIRGERA 76
>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone
H2a.Z-H2b
Length = 192
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 230 LQFPVGRIHRLL-RKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 288
LQFPVGRI R L R RVG+ A +YL AV+EYL AEVLELAGNAA+D K RI PR
Sbjct: 104 LQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPR 163
Query: 289 HLQLAIRNDEELNKLLSGVTIAQGGVLPNI 318
HLQLAIR D+EL+ L+ TIA GGVLP+I
Sbjct: 164 HLQLAIRGDDELDSLIRA-TIASGGVLPHI 192
>pdb|2YFV|A Chain A, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3,
Cse4 And H4
Length = 100
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 65/82 (79%), Gaps = 3/82 (3%)
Query: 85 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSSAVMALQEAS 141
RY+P +AL EIR+YQ+ST+LLI ++PF RLV+E+ F T+ LR+QS A+MALQEAS
Sbjct: 6 RYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEAS 65
Query: 142 EAYLVGLFEDTNLCAIHAKRQT 163
EAYLVGL E TNL A+HAKR T
Sbjct: 66 EAYLVGLLEHTNLLALHAKRIT 87
>pdb|2YFW|A Chain A, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|C Chain C, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|E Chain E, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|G Chain G, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
Length = 92
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 60/75 (80%), Gaps = 3/75 (4%)
Query: 92 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSSAVMALQEASEAYLVGL 148
AL EIR+YQ+ST+LLI ++PF RLV+E+ F T+ LR+QS A+MALQEASEAYLVGL
Sbjct: 1 ALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGL 60
Query: 149 FEDTNLCAIHAKRQT 163
E TNL A+HAKR T
Sbjct: 61 LEHTNLLALHAKRIT 75
>pdb|2L5A|A Chain A, Structural Basis For Recognition Of Centromere Specific
Histone H3 Variant By Nonhistone Scm3
Length = 235
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 61/97 (62%), Gaps = 17/97 (17%)
Query: 105 LLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 161
LLI K+PF RLV+E+ +F T DLR+QS A+MALQEASEAYLVGL E TNL A+HAKR
Sbjct: 10 LLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKR 69
Query: 162 --------QTARKSTG------GKAPRKQLATKAARK 184
Q AR+ G G R +LA + RK
Sbjct: 70 ITIMKKDMQLARRIRGQFLVPRGSMERHKLADENMRK 106
>pdb|3AN2|A Chain A, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|E Chain E, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
Length = 143
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 70/118 (59%), Gaps = 9/118 (7%)
Query: 53 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 107
R+S +APR++ + + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 8 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 65
Query: 108 RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
RKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +HA R T
Sbjct: 66 RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT 123
>pdb|3NQU|A Chain A, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2
HETEROTETRAMER
Length = 140
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 70/118 (59%), Gaps = 9/118 (7%)
Query: 53 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 107
R+S +APR++ + + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 5 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
Query: 108 RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
RKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +HA R T
Sbjct: 63 RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT 120
>pdb|3R45|A Chain A, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex
With Chaperone Hjurp
Length = 156
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 70/118 (59%), Gaps = 9/118 (7%)
Query: 53 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 107
R+S +APR++ + + P+ G H R R G L+EIR+ QKST LLI
Sbjct: 21 RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 78
Query: 108 RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
RKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +HA R T
Sbjct: 79 RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT 136
>pdb|2LY8|A Chain A, The Budding Yeast Chaperone Scm3 Recognizes The Partially
Unfolded Dimer Of The Centromere-specific Cse4/h4
Histone Variant
Length = 121
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 58/103 (56%), Gaps = 8/103 (7%)
Query: 106 LIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIH---- 158
LI K+PF RLV+E+ +F T DLR+QS A+MALQEASEAYLVGL E TNL A+H
Sbjct: 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPR 60
Query: 159 -AKRQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPLLNKL 200
+KR + +A K R S T K+ + L
Sbjct: 61 GSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSL 103
>pdb|3NQJ|A Chain A, Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER
Length = 82
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
Query: 105 LLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQ 162
LLIRKLPF RL REI F D +Q+ A++ALQEA+EA+LV LFED L +HA R
Sbjct: 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV 61
Query: 163 T 163
T
Sbjct: 62 T 62
>pdb|4FT4|P Chain P, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|Q Chain Q, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 32
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/32 (96%), Positives = 31/32 (96%)
Query: 2 ARTKQTARKSTGGKAPRKQLATKAARKSAPAT 33
ARTKQTAR STGGKAPRKQLATKAARKSAPAT
Sbjct: 1 ARTKQTARXSTGGKAPRKQLATKAARKSAPAT 32
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/32 (96%), Positives = 31/32 (96%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPAT 77
ARTKQTAR STGGKAPRKQLATKAARKSAPAT
Sbjct: 1 ARTKQTARXSTGGKAPRKQLATKAARKSAPAT 32
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/29 (93%), Positives = 28/29 (96%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPAT 189
+QTAR STGGKAPRKQLATKAARKSAPAT
Sbjct: 4 KQTARXSTGGKAPRKQLATKAARKSAPAT 32
>pdb|3N9P|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2
Peptide And Nog
pdb|3N9P|C Chain C, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2
Peptide And Nog
Length = 32
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/32 (90%), Positives = 30/32 (93%)
Query: 2 ARTKQTARKSTGGKAPRKQLATKAARKSAPAT 33
ART QTARKSTGGKAPRKQLATKAAR SAPA+
Sbjct: 1 ARTXQTARKSTGGKAPRKQLATKAARXSAPAS 32
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/32 (90%), Positives = 30/32 (93%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPAT 77
ART QTARKSTGGKAPRKQLATKAAR SAPA+
Sbjct: 1 ARTXQTARKSTGGKAPRKQLATKAARXSAPAS 32
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/28 (92%), Positives = 27/28 (96%)
Query: 162 QTARKSTGGKAPRKQLATKAARKSAPAT 189
QTARKSTGGKAPRKQLATKAAR SAPA+
Sbjct: 5 QTARKSTGGKAPRKQLATKAARXSAPAS 32
>pdb|3N9N|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2
Peptide And Nog
pdb|3N9N|C Chain C, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2
Peptide And Nog
Length = 32
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/32 (90%), Positives = 30/32 (93%)
Query: 2 ARTKQTARKSTGGKAPRKQLATKAARKSAPAT 33
ART QTAR STGGKAPRKQLATKAARKSAPA+
Sbjct: 1 ARTXQTARXSTGGKAPRKQLATKAARKSAPAS 32
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/32 (90%), Positives = 30/32 (93%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAPAT 77
ART QTAR STGGKAPRKQLATKAARKSAPA+
Sbjct: 1 ARTXQTARXSTGGKAPRKQLATKAARKSAPAS 32
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/28 (92%), Positives = 27/28 (96%)
Query: 162 QTARKSTGGKAPRKQLATKAARKSAPAT 189
QTAR STGGKAPRKQLATKAARKSAPA+
Sbjct: 5 QTARXSTGGKAPRKQLATKAARKSAPAS 32
>pdb|4HSU|C Chain C, Crystal Structure Of Lsd2-npac With H3(1-26)in Space
Group P21
Length = 30
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/30 (96%), Positives = 29/30 (96%)
Query: 2 ARTKQTARKSTGGKAPRKQLATKAARKSAP 31
ART QTARKSTGGKAPRKQLATKAARKSAP
Sbjct: 1 ARTMQTARKSTGGKAPRKQLATKAARKSAP 30
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/30 (96%), Positives = 29/30 (96%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKSAP 75
ART QTARKSTGGKAPRKQLATKAARKSAP
Sbjct: 1 ARTMQTARKSTGGKAPRKQLATKAARKSAP 30
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/26 (100%), Positives = 26/26 (100%)
Query: 162 QTARKSTGGKAPRKQLATKAARKSAP 187
QTARKSTGGKAPRKQLATKAARKSAP
Sbjct: 5 QTARKSTGGKAPRKQLATKAARKSAP 30
>pdb|4GU0|E Chain E, Crystal Structure Of Lsd2 With H3
pdb|4GU0|F Chain F, Crystal Structure Of Lsd2 With H3
Length = 26
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/26 (96%), Positives = 25/26 (96%)
Query: 2 ARTKQTARKSTGGKAPRKQLATKAAR 27
ART QTARKSTGGKAPRKQLATKAAR
Sbjct: 1 ARTMQTARKSTGGKAPRKQLATKAAR 26
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/26 (96%), Positives = 25/26 (96%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAAR 71
ART QTARKSTGGKAPRKQLATKAAR
Sbjct: 1 ARTMQTARKSTGGKAPRKQLATKAAR 26
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/22 (100%), Positives = 22/22 (100%)
Query: 162 QTARKSTGGKAPRKQLATKAAR 183
QTARKSTGGKAPRKQLATKAAR
Sbjct: 5 QTARKSTGGKAPRKQLATKAAR 26
>pdb|1Q9C|A Chain A, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|B Chain B, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|C Chain C, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|D Chain D, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|E Chain E, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|F Chain F, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|G Chain G, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|H Chain H, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
pdb|1Q9C|I Chain I, Crystal Structure Of The Histone Domain Of Son Of
Sevenless
Length = 191
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
L PV +IH LL++ ++ VY+ AV+EY++A++L+LAGN R+ + I +
Sbjct: 103 LSLPVEKIHPLLKEV-LGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQD 161
Query: 290 LQLAIRNDEEL 300
+++A D+ L
Sbjct: 162 IKVAXCADKVL 172
>pdb|3U5P|I Chain I, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|J Chain J, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|K Chain K, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|L Chain L, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|M Chain M, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|N Chain N, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|O Chain O, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|P Chain P, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 28
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 2 ARTKQTARKSTGGKAPRKQLATKAARKS 29
ARTKQTAR STGG APR QLAT AARKS
Sbjct: 1 ARTKQTARXSTGGXAPRXQLATXAARKS 28
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKAARKS 73
ARTKQTAR STGG APR QLAT AARKS
Sbjct: 1 ARTKQTARXSTGGXAPRXQLATXAARKS 28
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 21/25 (84%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKS 185
+QTAR STGG APR QLAT AARKS
Sbjct: 4 KQTARXSTGGXAPRXQLATXAARKS 28
>pdb|2P5B|I Chain I, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2P5B|J Chain J, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2PXJ|I Chain I, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
pdb|2PXJ|J Chain J, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
Length = 22
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 71 RKSAPATGGVKKPHRYRPGTV 91
RKSAPATGGV KPHRYRPGTV
Sbjct: 1 RKSAPATGGVXKPHRYRPGTV 21
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 27 RKSAPATGGVKKPH 40
RKSAPATGGV KPH
Sbjct: 1 RKSAPATGGVXKPH 14
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289
L PV +IH LL++ ++ VY+ AV+EY++A++L+L GN R+ + I +
Sbjct: 103 LSLPVEKIHPLLKE-VLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQD 161
Query: 290 LQLAIRNDEEL 300
+++A+ D+ L
Sbjct: 162 IKVAMCADKVL 172
>pdb|3A1B|A Chain A, Crystal Structure Of The Dnmt3a Add Domain In Complex
With Histone H3
Length = 159
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/20 (100%), Positives = 20/20 (100%)
Query: 2 ARTKQTARKSTGGKAPRKQL 21
ARTKQTARKSTGGKAPRKQL
Sbjct: 1 ARTKQTARKSTGGKAPRKQL 20
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/20 (100%), Positives = 20/20 (100%)
Query: 46 ARTKQTARKSTGGKAPRKQL 65
ARTKQTARKSTGGKAPRKQL
Sbjct: 1 ARTKQTARKSTGGKAPRKQL 20
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 17/17 (100%)
Query: 161 RQTARKSTGGKAPRKQL 177
+QTARKSTGGKAPRKQL
Sbjct: 4 KQTARKSTGGKAPRKQL 20
>pdb|2X4W|B Chain B, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|B Chain B, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|D Chain D, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|F Chain F, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4X|H Chain H, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|B Chain B, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|D Chain D, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|F Chain F, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|H Chain H, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|J Chain J, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|L Chain L, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|N Chain N, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1.
pdb|2X4Y|P Chain P, Molecular Basis Of Histone H3k36me3 Recognition By The
Pwwp Domain Of Brpf1
Length = 21
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 67 TKAARKSAPATGGVKKPHRYR 87
TKAARKSAPATGGV KPHRYR
Sbjct: 1 TKAARKSAPATGGVXKPHRYR 21
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/18 (94%), Positives = 17/18 (94%)
Query: 23 TKAARKSAPATGGVKKPH 40
TKAARKSAPATGGV KPH
Sbjct: 1 TKAARKSAPATGGVXKPH 18
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 16/17 (94%)
Query: 179 TKAARKSAPATGGVKKP 195
TKAARKSAPATGGV KP
Sbjct: 1 TKAARKSAPATGGVXKP 17
>pdb|3KV4|B Chain B, Structure Of Phf8 In Complex With Histone H3
Length = 24
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/24 (91%), Positives = 22/24 (91%)
Query: 2 ARTKQTARKSTGGKAPRKQLATKA 25
ART QTAR STGGKAPRKQLATKA
Sbjct: 1 ARTXQTARXSTGGKAPRKQLATKA 24
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/24 (91%), Positives = 22/24 (91%)
Query: 46 ARTKQTARKSTGGKAPRKQLATKA 69
ART QTAR STGGKAPRKQLATKA
Sbjct: 1 ARTXQTARXSTGGKAPRKQLATKA 24
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/20 (95%), Positives = 19/20 (95%)
Query: 162 QTARKSTGGKAPRKQLATKA 181
QTAR STGGKAPRKQLATKA
Sbjct: 5 QTARXSTGGKAPRKQLATKA 24
>pdb|3AVR|B Chain B, Catalytic Fragment Of UtxKDM6A BOUND WITH HISTONE
H3K27ME3 PEPTIDE, N-Oxyalylglycine, And Ni(Ii)
Length = 22
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/22 (95%), Positives = 21/22 (95%)
Query: 18 RKQLATKAARKSAPATGGVKKP 39
RKQLATKAAR SAPATGGVKKP
Sbjct: 1 RKQLATKAARXSAPATGGVKKP 22
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/22 (95%), Positives = 21/22 (95%)
Query: 62 RKQLATKAARKSAPATGGVKKP 83
RKQLATKAAR SAPATGGVKKP
Sbjct: 1 RKQLATKAARXSAPATGGVKKP 22
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/22 (95%), Positives = 21/22 (95%)
Query: 174 RKQLATKAARKSAPATGGVKKP 195
RKQLATKAAR SAPATGGVKKP
Sbjct: 1 RKQLATKAARXSAPATGGVKKP 22
>pdb|2KFT|B Chain B, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 21
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 2 ARTKQTARKSTGGKAPRKQLA 22
ARTKQTARKSTGGKAPRKQL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLC 21
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 46 ARTKQTARKSTGGKAPRKQLA 66
ARTKQTARKSTGGKAPRKQL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLC 21
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 17/18 (94%)
Query: 161 RQTARKSTGGKAPRKQLA 178
+QTARKSTGGKAPRKQL
Sbjct: 4 KQTARKSTGGKAPRKQLC 21
>pdb|2KWK|B Chain B, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide
Wild Type
Length = 20
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/20 (100%), Positives = 20/20 (100%)
Query: 2 ARTKQTARKSTGGKAPRKQL 21
ARTKQTARKSTGGKAPRKQL
Sbjct: 1 ARTKQTARKSTGGKAPRKQL 20
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/20 (100%), Positives = 20/20 (100%)
Query: 46 ARTKQTARKSTGGKAPRKQL 65
ARTKQTARKSTGGKAPRKQL
Sbjct: 1 ARTKQTARKSTGGKAPRKQL 20
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 17/17 (100%)
Query: 161 RQTARKSTGGKAPRKQL 177
+QTARKSTGGKAPRKQL
Sbjct: 4 KQTARKSTGGKAPRKQL 20
>pdb|2UXN|E Chain E, Structural Basis Of Histone Demethylation By Lsd1
Revealed By Suicide Inactivation
Length = 21
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 2 ARTKQTARKSTGGKAPRKQLA 22
ART QTARKSTGGKAPRKQLA
Sbjct: 1 ARTXQTARKSTGGKAPRKQLA 21
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 46 ARTKQTARKSTGGKAPRKQLA 66
ART QTARKSTGGKAPRKQLA
Sbjct: 1 ARTXQTARKSTGGKAPRKQLA 21
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/17 (100%), Positives = 17/17 (100%)
Query: 162 QTARKSTGGKAPRKQLA 178
QTARKSTGGKAPRKQLA
Sbjct: 5 QTARKSTGGKAPRKQLA 21
>pdb|2V1D|C Chain C, Structural Basis Of Lsd1-Corest Selectivity In Histone
H3 Recognition
pdb|4GUR|C Chain C, Crystal Structure Of Lsd2-npac With H3 In Space Group
P21
pdb|4GUS|C Chain C, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
Length = 21
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 2 ARTKQTARKSTGGKAPRKQLA 22
ART QTARKSTGGKAPRKQLA
Sbjct: 1 ARTMQTARKSTGGKAPRKQLA 21
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 46 ARTKQTARKSTGGKAPRKQLA 66
ART QTARKSTGGKAPRKQLA
Sbjct: 1 ARTMQTARKSTGGKAPRKQLA 21
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/17 (100%), Positives = 17/17 (100%)
Query: 162 QTARKSTGGKAPRKQLA 178
QTARKSTGGKAPRKQLA
Sbjct: 5 QTARKSTGGKAPRKQLA 21
>pdb|2G46|C Chain C, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
pdb|2G46|D Chain D, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
Length = 21
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 14 GKAPRKQLATKAARKSAPATG 34
GKAPRKQLATKAAR SAPATG
Sbjct: 1 GKAPRKQLATKAARXSAPATG 21
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 58 GKAPRKQLATKAARKSAPATG 78
GKAPRKQLATKAAR SAPATG
Sbjct: 1 GKAPRKQLATKAARXSAPATG 21
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 170 GKAPRKQLATKAARKSAPATG 190
GKAPRKQLATKAAR SAPATG
Sbjct: 1 GKAPRKQLATKAARXSAPATG 21
>pdb|1M1D|B Chain B, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
pdb|1M1D|D Chain D, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
pdb|2KTB|A Chain A, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone
3
pdb|2KWJ|B Chain B, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
Length = 20
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/20 (95%), Positives = 19/20 (95%)
Query: 2 ARTKQTARKSTGGKAPRKQL 21
ARTKQTARKSTGG APRKQL
Sbjct: 1 ARTKQTARKSTGGXAPRKQL 20
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/20 (95%), Positives = 19/20 (95%)
Query: 46 ARTKQTARKSTGGKAPRKQL 65
ARTKQTARKSTGG APRKQL
Sbjct: 1 ARTKQTARKSTGGXAPRKQL 20
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/17 (88%), Positives = 16/17 (94%)
Query: 161 RQTARKSTGGKAPRKQL 177
+QTARKSTGG APRKQL
Sbjct: 4 KQTARKSTGGXAPRKQL 20
>pdb|4FWF|E Chain E, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
Length = 20
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/20 (95%), Positives = 19/20 (95%)
Query: 2 ARTKQTARKSTGGKAPRKQL 21
ART QTARKSTGGKAPRKQL
Sbjct: 1 ARTMQTARKSTGGKAPRKQL 20
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/20 (95%), Positives = 19/20 (95%)
Query: 46 ARTKQTARKSTGGKAPRKQL 65
ART QTARKSTGGKAPRKQL
Sbjct: 1 ARTMQTARKSTGGKAPRKQL 20
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/16 (100%), Positives = 16/16 (100%)
Query: 162 QTARKSTGGKAPRKQL 177
QTARKSTGGKAPRKQL
Sbjct: 5 QTARKSTGGKAPRKQL 20
>pdb|2YBA|C Chain C, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|D Chain D, Crystal Structure Of Nurf55 In Complex With Histone H3
Length = 19
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/19 (100%), Positives = 19/19 (100%)
Query: 2 ARTKQTARKSTGGKAPRKQ 20
ARTKQTARKSTGGKAPRKQ
Sbjct: 1 ARTKQTARKSTGGKAPRKQ 19
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/19 (100%), Positives = 19/19 (100%)
Query: 46 ARTKQTARKSTGGKAPRKQ 64
ARTKQTARKSTGGKAPRKQ
Sbjct: 1 ARTKQTARKSTGGKAPRKQ 19
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 16/16 (100%)
Query: 161 RQTARKSTGGKAPRKQ 176
+QTARKSTGGKAPRKQ
Sbjct: 4 KQTARKSTGGKAPRKQ 19
>pdb|3U5O|I Chain I, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|J Chain J, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|K Chain K, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|L Chain L, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|M Chain M, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|N Chain N, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|O Chain O, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|P Chain P, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
Length = 22
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/22 (86%), Positives = 19/22 (86%)
Query: 2 ARTKQTARKSTGGKAPRKQLAT 23
ARTKQTAR STGG APR QLAT
Sbjct: 1 ARTKQTARXSTGGXAPRXQLAT 22
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/22 (86%), Positives = 19/22 (86%)
Query: 46 ARTKQTARKSTGGKAPRKQLAT 67
ARTKQTAR STGG APR QLAT
Sbjct: 1 ARTKQTARXSTGGXAPRXQLAT 22
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 16/19 (84%)
Query: 161 RQTARKSTGGKAPRKQLAT 179
+QTAR STGG APR QLAT
Sbjct: 4 KQTARXSTGGXAPRXQLAT 22
>pdb|1PU9|B Chain B, Crystal Structure Of Tetrahymena Gcn5 With Bound
Coenzyme A And A 19-Residue Histone H3 Peptide
Length = 19
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/19 (94%), Positives = 19/19 (100%)
Query: 6 QTARKSTGGKAPRKQLATK 24
QTARKSTGGKAPRKQLA+K
Sbjct: 1 QTARKSTGGKAPRKQLASK 19
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/19 (94%), Positives = 19/19 (100%)
Query: 50 QTARKSTGGKAPRKQLATK 68
QTARKSTGGKAPRKQLA+K
Sbjct: 1 QTARKSTGGKAPRKQLASK 19
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/19 (94%), Positives = 19/19 (100%)
Query: 162 QTARKSTGGKAPRKQLATK 180
QTARKSTGGKAPRKQLA+K
Sbjct: 1 QTARKSTGGKAPRKQLASK 19
>pdb|3O34|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
Length = 22
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/20 (95%), Positives = 19/20 (95%)
Query: 14 GKAPRKQLATKAARKSAPAT 33
GKAPRKQLAT AARKSAPAT
Sbjct: 1 GKAPRKQLATXAARKSAPAT 20
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/20 (95%), Positives = 19/20 (95%)
Query: 58 GKAPRKQLATKAARKSAPAT 77
GKAPRKQLAT AARKSAPAT
Sbjct: 1 GKAPRKQLATXAARKSAPAT 20
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/20 (95%), Positives = 19/20 (95%)
Query: 170 GKAPRKQLATKAARKSAPAT 189
GKAPRKQLAT AARKSAPAT
Sbjct: 1 GKAPRKQLATXAARKSAPAT 20
>pdb|2K3Y|A Chain A, Solution Structure Of Eaf3 Chromo Barrel Domain Bound To
Histone H3 With A Dimethyllysine Analog H3k36me2
Length = 136
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 60 APRKQLATKAARK-SAPATGGVKKPHRYR 87
A +K+LA +A SAPATGGV KPHRYR
Sbjct: 108 AMKKRLANEAGSTGSAPATGGVXKPHRYR 136
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 16 APRKQLATKAARK-SAPATGGVKKPH 40
A +K+LA +A SAPATGGV KPH
Sbjct: 108 AMKKRLANEAGSTGSAPATGGVXKPH 133
>pdb|2B2W|D Chain D, Tandem Chromodomains Of Human Chd1 Complexed With
Histone H3 Tail Containing Trimethyllysine 4
Length = 20
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 18/20 (90%)
Query: 2 ARTKQTARKSTGGKAPRKQL 21
ART QTARKSTGGKAPRKQ
Sbjct: 1 ARTXQTARKSTGGKAPRKQY 20
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 18/20 (90%)
Query: 46 ARTKQTARKSTGGKAPRKQL 65
ART QTARKSTGGKAPRKQ
Sbjct: 1 ARTXQTARKSTGGKAPRKQY 20
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 162 QTARKSTGGKAPRKQL 177
QTARKSTGGKAPRKQ
Sbjct: 5 QTARKSTGGKAPRKQY 20
>pdb|3U5N|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
Length = 20
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 18/20 (90%)
Query: 2 ARTKQTARKSTGGKAPRKQL 21
ARTKQTAR STGG APRKQL
Sbjct: 1 ARTKQTARXSTGGXAPRKQL 20
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 18/20 (90%)
Query: 46 ARTKQTARKSTGGKAPRKQL 65
ARTKQTAR STGG APRKQL
Sbjct: 1 ARTKQTARXSTGGXAPRKQL 20
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/17 (82%), Positives = 15/17 (88%)
Query: 161 RQTARKSTGGKAPRKQL 177
+QTAR STGG APRKQL
Sbjct: 4 KQTARXSTGGXAPRKQL 20
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain
Histone Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain
Histone Chimera
Length = 361
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 22/39 (56%)
Query: 51 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPG 89
TARKSTGG APRK RK A GG + +Y PG
Sbjct: 7 TARKSTGGXAPRKGGMVVKKRKLATEAGGSDERPKYLPG 45
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 17/29 (58%)
Query: 7 TARKSTGGKAPRKQLATKAARKSAPATGG 35
TARKSTGG APRK RK A GG
Sbjct: 7 TARKSTGGXAPRKGGMVVKKRKLATEAGG 35
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 17/29 (58%)
Query: 163 TARKSTGGKAPRKQLATKAARKSAPATGG 191
TARKSTGG APRK RK A GG
Sbjct: 7 TARKSTGGXAPRKGGMVVKKRKLATEAGG 35
>pdb|1PUA|B Chain B, Crystal Structure Of Tetrahymena Gcn5 With Bound
Coenzyme A And A Phosphorylated, 19-Residue Histone H3
Peptide
Length = 19
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/19 (89%), Positives = 18/19 (94%)
Query: 6 QTARKSTGGKAPRKQLATK 24
QTARK TGGKAPRKQLA+K
Sbjct: 1 QTARKXTGGKAPRKQLASK 19
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/19 (89%), Positives = 18/19 (94%)
Query: 50 QTARKSTGGKAPRKQLATK 68
QTARK TGGKAPRKQLA+K
Sbjct: 1 QTARKXTGGKAPRKQLASK 19
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/19 (89%), Positives = 18/19 (94%)
Query: 162 QTARKSTGGKAPRKQLATK 180
QTARK TGGKAPRKQLA+K
Sbjct: 1 QTARKXTGGKAPRKQLASK 19
>pdb|2B2T|D Chain D, Tandem Chromodomains Of Human Chd1 Complexed With
Histone H3 Tail Containing Trimethyllysine 4 And
Phosphothreonine 3
Length = 20
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 17/20 (85%)
Query: 2 ARTKQTARKSTGGKAPRKQL 21
AR QTARKSTGGKAPRKQ
Sbjct: 1 ARXXQTARKSTGGKAPRKQY 20
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 17/20 (85%)
Query: 46 ARTKQTARKSTGGKAPRKQL 65
AR QTARKSTGGKAPRKQ
Sbjct: 1 ARXXQTARKSTGGKAPRKQY 20
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 162 QTARKSTGGKAPRKQL 177
QTARKSTGGKAPRKQ
Sbjct: 5 QTARKSTGGKAPRKQY 20
>pdb|2Q8D|F Chain F, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8D|G Chain G, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8E|F Chain F, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
pdb|2Q8E|G Chain G, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
Length = 16
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 71 RKSAPATGGVKKPHRY 86
RKSAPATGGV KPHRY
Sbjct: 1 RKSAPATGGVXKPHRY 16
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 27 RKSAPATGGVKKPH 40
RKSAPATGGV KPH
Sbjct: 1 RKSAPATGGVXKPH 14
>pdb|3V43|Q Chain Q, Crystal Structure Of Moz
Length = 18
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/18 (94%), Positives = 17/18 (94%)
Query: 2 ARTKQTARKSTGGKAPRK 19
ARTKQTARKSTGG APRK
Sbjct: 1 ARTKQTARKSTGGXAPRK 18
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/18 (94%), Positives = 17/18 (94%)
Query: 46 ARTKQTARKSTGGKAPRK 63
ARTKQTARKSTGG APRK
Sbjct: 1 ARTKQTARKSTGGXAPRK 18
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 161 RQTARKSTGGKAPRK 175
+QTARKSTGG APRK
Sbjct: 4 KQTARKSTGGXAPRK 18
>pdb|2RSN|B Chain B, Solution Structure Of The Chromodomain Of Chp1 In
Complex With H3k9me3 Peptide
Length = 18
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 16/17 (94%)
Query: 2 ARTKQTARKSTGGKAPR 18
ARTKQTAR STGGKAPR
Sbjct: 1 ARTKQTARXSTGGKAPR 17
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 16/17 (94%)
Query: 46 ARTKQTARKSTGGKAPR 62
ARTKQTAR STGGKAPR
Sbjct: 1 ARTKQTARXSTGGKAPR 17
>pdb|3N9O|C Chain C, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|4GY5|E Chain E, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|F Chain F, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 17
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 16/17 (94%)
Query: 2 ARTKQTARKSTGGKAPR 18
ARTKQTAR STGGKAPR
Sbjct: 1 ARTKQTARXSTGGKAPR 17
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/17 (94%), Positives = 16/17 (94%)
Query: 46 ARTKQTARKSTGGKAPR 62
ARTKQTAR STGGKAPR
Sbjct: 1 ARTKQTARXSTGGKAPR 17
>pdb|1PDQ|B Chain B, Polycomb Chromodomain Complexed With The Histone H3 Tail
Containing Trimethyllysine 27
Length = 18
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 17/18 (94%)
Query: 16 APRKQLATKAARKSAPAT 33
APRKQLATKAAR SAP+T
Sbjct: 1 APRKQLATKAARXSAPST 18
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 17/18 (94%)
Query: 60 APRKQLATKAARKSAPAT 77
APRKQLATKAAR SAP+T
Sbjct: 1 APRKQLATKAARXSAPST 18
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 17/18 (94%)
Query: 172 APRKQLATKAARKSAPAT 189
APRKQLATKAAR SAP+T
Sbjct: 1 APRKQLATKAARXSAPST 18
>pdb|2VPG|P Chain P, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
pdb|2VPG|R Chain R, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 18
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 16/18 (88%)
Query: 2 ARTKQTARKSTGGKAPRK 19
A T QTARKSTGGKAPRK
Sbjct: 1 AXTXQTARKSTGGKAPRK 18
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 16/18 (88%)
Query: 46 ARTKQTARKSTGGKAPRK 63
A T QTARKSTGGKAPRK
Sbjct: 1 AXTXQTARKSTGGKAPRK 18
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/14 (100%), Positives = 14/14 (100%)
Query: 162 QTARKSTGGKAPRK 175
QTARKSTGGKAPRK
Sbjct: 5 QTARKSTGGKAPRK 18
>pdb|4EYU|A Chain A, The Free Structure Of The Mouse C-Terminal Domain Of Kdm6b
pdb|4EYU|B Chain B, The Free Structure Of The Mouse C-Terminal Domain Of Kdm6b
pdb|4EZ4|A Chain A, Free Kdm6b Structure
pdb|4EZ4|B Chain B, Free Kdm6b Structure
pdb|4EZH|A Chain A, The Crystal Structure Of Kdm6b Bound With H3k27me3 Peptide
pdb|4EZH|B Chain B, The Crystal Structure Of Kdm6b Bound With H3k27me3 Peptide
Length = 486
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 67 TKAARKSAPATGG--VKKPHRYRPGT-VALREIRRYQKSTELLIRKLPFQRL 115
TKAARKSAPATGG H + GT + L + +R++ + L++ F R+
Sbjct: 148 TKAARKSAPATGGGSSGSHHIIKFGTNIDLSDAKRWKPQLQELLKLPAFMRV 199
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/13 (100%), Positives = 13/13 (100%)
Query: 23 TKAARKSAPATGG 35
TKAARKSAPATGG
Sbjct: 148 TKAARKSAPATGG 160
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/13 (100%), Positives = 13/13 (100%)
Query: 179 TKAARKSAPATGG 191
TKAARKSAPATGG
Sbjct: 148 TKAARKSAPATGG 160
>pdb|4EDU|T Chain T, The Mbt Repeats Of Human Scml2 In A Complex With Histone
H2a Peptide
Length = 16
Score = 31.2 bits (69), Expect = 0.77, Method: Composition-based stats.
Identities = 14/16 (87%), Positives = 15/16 (93%)
Query: 237 IHRLLRKGNYAERVGA 252
+HRLLR GNYAERVGA
Sbjct: 1 VHRLLRXGNYAERVGA 16
>pdb|3N9Q|C Chain C, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
Length = 17
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/17 (88%), Positives = 16/17 (94%)
Query: 20 QLATKAARKSAPATGGV 36
QLATKAAR SAPA+GGV
Sbjct: 1 QLATKAARXSAPASGGV 17
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/17 (88%), Positives = 16/17 (94%)
Query: 64 QLATKAARKSAPATGGV 80
QLATKAAR SAPA+GGV
Sbjct: 1 QLATKAARXSAPASGGV 17
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/17 (88%), Positives = 16/17 (94%)
Query: 176 QLATKAARKSAPATGGV 192
QLATKAAR SAPA+GGV
Sbjct: 1 QLATKAARXSAPASGGV 17
>pdb|2X0L|C Chain C, Crystal Structure Of A Neuro-Specific Splicing Variant
Of Human Histone Lysine Demethylase Lsd1
Length = 16
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 2 ARTKQTARKSTGGKAP 17
ART QTARKSTGGKAP
Sbjct: 1 ARTMQTARKSTGGKAP 16
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 46 ARTKQTARKSTGGKAP 61
ART QTARKSTGGKAP
Sbjct: 1 ARTMQTARKSTGGKAP 16
>pdb|4A7J|B Chain B, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 16
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 1 MARTKQTARKSTGGKA 16
MA TKQTARKSTGGKA
Sbjct: 1 MAXTKQTARKSTGGKA 16
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 45 MARTKQTARKSTGGKA 60
MA TKQTARKSTGGKA
Sbjct: 1 MAXTKQTARKSTGGKA 16
>pdb|1PEG|P Chain P, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|Q Chain Q, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|2CO0|B Chain B, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
pdb|2CO0|D Chain D, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
pdb|3QLC|C Chain C, Complex Structure Of Atrx Add Domain Bound To Unmodified
H3 1-15 Peptide
pdb|3QLC|D Chain D, Complex Structure Of Atrx Add Domain Bound To Unmodified
H3 1-15 Peptide
pdb|4GNF|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-15
Length = 15
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/15 (100%), Positives = 15/15 (100%)
Query: 2 ARTKQTARKSTGGKA 16
ARTKQTARKSTGGKA
Sbjct: 1 ARTKQTARKSTGGKA 15
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/15 (100%), Positives = 15/15 (100%)
Query: 46 ARTKQTARKSTGGKA 60
ARTKQTARKSTGGKA
Sbjct: 1 ARTKQTARKSTGGKA 15
>pdb|2KVM|B Chain B, Solution Structure Of The Cbx7 Chromodomain In Complex
With A H3k27me2 Peptide
Length = 16
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 16 APRKQLATKAARKSAP 31
APRKQLATKAAR SAP
Sbjct: 1 APRKQLATKAARXSAP 16
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 60 APRKQLATKAARKSAP 75
APRKQLATKAAR SAP
Sbjct: 1 APRKQLATKAARXSAP 16
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 172 APRKQLATKAARKSAP 187
APRKQLATKAAR SAP
Sbjct: 1 APRKQLATKAARXSAP 16
>pdb|1GUW|B Chain B, Structure Of The Chromodomain From Mouse Hp1beta In
Complex With The Lysine 9-Methyl Histone H3 N-Terminal
Peptide, Nmr, 25 Structures
Length = 18
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/16 (87%), Positives = 14/16 (87%)
Query: 2 ARTKQTARKSTGGKAP 17
ART QTAR STGGKAP
Sbjct: 1 ARTXQTARXSTGGKAP 16
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/16 (87%), Positives = 14/16 (87%)
Query: 46 ARTKQTARKSTGGKAP 61
ART QTAR STGGKAP
Sbjct: 1 ARTXQTARXSTGGKAP 16
>pdb|1YXM|A Chain A, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|B Chain B, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|C Chain C, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
pdb|1YXM|D Chain D, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa
Reductase
Length = 303
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
Query: 281 KKTRIIPRHLQLAIRNDEELNKLL 304
K+ R+IP +Q IRN+EE+N L+
Sbjct: 70 KQARVIP--IQCNIRNEEEVNNLV 91
>pdb|3Q33|D Chain D, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
Length = 15
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/14 (100%), Positives = 14/14 (100%)
Query: 2 ARTKQTARKSTGGK 15
ARTKQTARKSTGGK
Sbjct: 1 ARTKQTARKSTGGK 14
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/14 (100%), Positives = 14/14 (100%)
Query: 46 ARTKQTARKSTGGK 59
ARTKQTARKSTGGK
Sbjct: 1 ARTKQTARKSTGGK 14
>pdb|2B2V|D Chain D, Crystal Structure Analysis Of Human Chd1 Chromodomains 1
And 2 Bound To Histone H3 Resi 1-15 Mek4
Length = 16
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 2 ARTKQTARKSTGGKA 16
ART QTARKSTGGKA
Sbjct: 1 ARTXQTARKSTGGKA 15
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 46 ARTKQTARKSTGGKA 60
ART QTARKSTGGKA
Sbjct: 1 ARTXQTARKSTGGKA 15
>pdb|1KNA|P Chain P, Chromo Domain Of Hp1 Complexed With Histone H3 Tail
Containing Dimethyllysine 9.
pdb|1KNE|P Chain P, Chromo Domain Of Hp1 Complexed With Histone H3 Tail
Containing Trimethyllysine 9
pdb|1Q3L|P Chain P, Chromodomain Of Hp1 Complexed With Histone H3 Tail
Containing Monomethyllysine 9.
pdb|3G7L|P Chain P, Chromodomain Of Chp1 In Complex With Histone H3k9me3
Peptide
Length = 16
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 2 ARTKQTARKSTGGKA 16
ARTKQTAR STGGKA
Sbjct: 1 ARTKQTARXSTGGKA 15
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 46 ARTKQTARKSTGGKA 60
ARTKQTAR STGGKA
Sbjct: 1 ARTKQTARXSTGGKA 15
>pdb|2Q8C|F Chain F, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8C|G Chain G, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|3B95|P Chain P, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|2RNW|B Chain B, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|3FDT|T Chain T, Crystal Structure Of The Complex Of Human Chromobox
Homolog 5 (Cbx5) With H3k9(Me)3 Peptide
pdb|3GV6|B Chain B, Crystal Structure Of Human Chromobox Homolog 6 (Cbx6)
With H3k9 Peptide
pdb|2L11|B Chain B, Solution Nmr Structure Of The Cbx3 In Complex With
H3k9me3 Peptide
pdb|2L12|B Chain B, Solution Nmr Structure Of The Chromobox Protein 7 With
H3k9me3
pdb|3QO2|P Chain P, Structural Insights For Mpp8 Chromodomain Interaction
With Histone H3 Lysine 9
pdb|3QO2|Q Chain Q, Structural Insights For Mpp8 Chromodomain Interaction
With Histone H3 Lysine 9
pdb|3QO2|R Chain R, Structural Insights For Mpp8 Chromodomain Interaction
With Histone H3 Lysine 9
pdb|3QO2|S Chain S, Structural Insights For Mpp8 Chromodomain Interaction
With Histone H3 Lysine 9
pdb|3R93|E Chain E, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|F Chain F, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|G Chain G, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|H Chain H, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|2LBM|C Chain C, Solution Structure Of The Add Domain Of Atrx Complexed
With Histone Tail H3 1-15 K9me3
pdb|3QL9|C Chain C, Monoclinic Complex Structure Of Atrx Add Bound To
Histone H3k9me3 Peptide
pdb|3QLA|C Chain C, Hexagonal Complex Structure Of Atrx Add Bound To H3k9me3
Peptide
pdb|3QLA|F Chain F, Hexagonal Complex Structure Of Atrx Add Bound To H3k9me3
Peptide
pdb|4FT2|P Chain P, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4GNG|B Chain B, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
pdb|4GNG|F Chain F, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
Length = 15
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 2 ARTKQTARKSTGGKA 16
ARTKQTAR STGGKA
Sbjct: 1 ARTKQTARXSTGGKA 15
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 46 ARTKQTARKSTGGKA 60
ARTKQTAR STGGKA
Sbjct: 1 ARTKQTARXSTGGKA 15
>pdb|2F6J|P Chain P, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2FSA|P Chain P, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FUU|B Chain B, Nmr Solution Structure Of The Phd Domain From The Human
Bptf In Complex With H3(1-15)k4me3 Peptide
pdb|3N9L|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9O|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9Q|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
Length = 15
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 2 ARTKQTARKSTGGKA 16
ART QTARKSTGGKA
Sbjct: 1 ARTXQTARKSTGGKA 15
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 46 ARTKQTARKSTGGKA 60
ART QTARKSTGGKA
Sbjct: 1 ARTXQTARKSTGGKA 15
>pdb|1JFI|A Chain A, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 98
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 232 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQ 291
FP RI ++++ +V A PV ++ +E +L+ A + + HL+
Sbjct: 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLK 71
Query: 292 LAI 294
I
Sbjct: 72 QCI 74
>pdb|3H91|C Chain C, Crystal Structure Of The Complex Of Human Chromobox
Homolog 2 (Cbx2) And H3k27 Peptide
pdb|3H91|D Chain D, Crystal Structure Of The Complex Of Human Chromobox
Homolog 2 (Cbx2) And H3k27 Peptide
pdb|2L1B|B Chain B, Solution Nmr Structure Of The Chromobox Protein Cbx7
With H3k27me3
Length = 15
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 20 QLATKAARKSAPATG 34
QLATKAAR SAPATG
Sbjct: 1 QLATKAARXSAPATG 15
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 64 QLATKAARKSAPATG 78
QLATKAAR SAPATG
Sbjct: 1 QLATKAARXSAPATG 15
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 176 QLATKAARKSAPATG 190
QLATKAAR SAPATG
Sbjct: 1 QLATKAARXSAPATG 15
>pdb|3UIG|P Chain P, Crystal Structure Of Human Survivin In Complex With T3
Phosphorylated H3(1-15) Peptide
pdb|3UIG|Q Chain Q, Crystal Structure Of Human Survivin In Complex With T3
Phosphorylated H3(1-15) Peptide
Length = 15
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 2 ARTKQTARKSTGGKA 16
AR KQTARKSTGGKA
Sbjct: 1 ARXKQTARKSTGGKA 15
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 46 ARTKQTARKSTGGKA 60
AR KQTARKSTGGKA
Sbjct: 1 ARXKQTARKSTGGKA 15
>pdb|4AWL|C Chain C, The Nf-y Transcription Factor Is Structurally And
Functionally A Sequence Specific Histone
Length = 94
Score = 28.1 bits (61), Expect = 6.5, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 34/74 (45%)
Query: 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 290
+ P+ RI ++++ + + A APV A + E+ A DNK+ + +
Sbjct: 16 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 75
Query: 291 QLAIRNDEELNKLL 304
+AI ++ + L+
Sbjct: 76 AMAITKFDQFDFLI 89
>pdb|1N1J|B Chain B, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
Length = 97
Score = 28.1 bits (61), Expect = 6.5, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 34/74 (45%)
Query: 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 290
+ P+ RI ++++ + + A APV A + E+ A DNK+ + +
Sbjct: 19 ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 78
Query: 291 QLAIRNDEELNKLL 304
+AI ++ + L+
Sbjct: 79 AMAITKFDQFDFLI 92
>pdb|3MO8|B Chain B, Pwwp Domain Of Human Bromodomain And Phd
Finger-Containing Protein 1 In Complex With
Trimethylated H3k36 Peptide
pdb|2YBP|C Chain C, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBP|D Chain D, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|C Chain C, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|D Chain D, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
Length = 12
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 75 PATGGVKKPHRY 86
PATGGV KPHRY
Sbjct: 1 PATGGVXKPHRY 12
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,167,106
Number of Sequences: 62578
Number of extensions: 285217
Number of successful extensions: 1126
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 326
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)