Query psy7425
Match_columns 331
No_of_seqs 416 out of 1185
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 18:00:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00018 histone H3; Provision 100.0 3.3E-50 7.3E-55 343.7 10.1 133 45-183 1-133 (136)
2 PLN00121 histone H3; Provision 100.0 4E-50 8.8E-55 343.2 10.0 135 45-185 1-135 (136)
3 PLN00161 histone H3; Provision 100.0 2.7E-49 5.9E-54 336.5 9.8 129 45-186 1-130 (135)
4 PLN00153 histone H2A; Provisio 100.0 6.1E-48 1.3E-52 326.6 10.7 123 208-330 1-123 (129)
5 KOG1745|consensus 100.0 5.9E-48 1.3E-52 328.3 8.0 131 45-181 1-132 (137)
6 PLN00157 histone H2A; Provisio 100.0 2.9E-47 6.3E-52 323.6 11.1 123 208-330 1-125 (132)
7 PLN00156 histone H2AX; Provisi 100.0 6E-46 1.3E-50 317.4 10.8 118 212-329 10-127 (139)
8 PTZ00017 histone H2A; Provisio 100.0 1.1E-45 2.3E-50 315.0 10.7 113 218-330 14-126 (134)
9 PTZ00252 histone H2A; Provisio 100.0 6E-45 1.3E-49 308.9 10.3 108 220-327 13-123 (134)
10 KOG1756|consensus 100.0 2.2E-44 4.7E-49 301.4 10.1 122 208-329 1-125 (131)
11 PLN00154 histone H2A; Provisio 100.0 7E-44 1.5E-48 303.4 10.3 112 217-329 24-136 (136)
12 smart00414 H2A Histone 2A. 100.0 3E-43 6.4E-48 290.9 9.5 106 223-328 1-106 (106)
13 cd00074 H2A Histone 2A; H2A is 100.0 2.8E-42 6.2E-47 288.7 10.6 112 215-326 4-115 (115)
14 PLN00160 histone H3; Provision 100.0 3.5E-42 7.6E-47 279.2 7.6 91 86-182 1-92 (97)
15 COG5262 HTA1 Histone H2A [Chro 100.0 9.5E-42 2.1E-46 281.7 9.0 119 211-329 4-124 (132)
16 smart00428 H3 Histone H3. 100.0 9.8E-42 2.1E-46 280.8 8.3 98 79-182 2-101 (105)
17 KOG1757|consensus 100.0 1.1E-36 2.3E-41 250.0 3.4 112 218-330 17-129 (131)
18 PLN00155 histone H2A; Provisio 99.8 1.3E-21 2.7E-26 144.4 4.6 58 208-265 1-58 (58)
19 COG2036 HHT1 Histones H3 and H 99.8 1.3E-20 2.7E-25 151.9 6.6 84 88-182 1-84 (91)
20 PF00125 Histone: Core histone 99.6 8.4E-16 1.8E-20 118.5 5.5 75 102-182 1-75 (75)
21 PF00125 Histone: Core histone 99.3 1.5E-12 3.3E-17 100.3 4.7 73 225-297 2-75 (75)
22 COG5247 BUR6 Class 2 transcrip 99.2 3.8E-11 8.3E-16 97.8 6.1 82 231-312 23-104 (113)
23 KOG1659|consensus 98.8 7.7E-09 1.7E-13 94.5 6.3 74 231-304 13-86 (224)
24 cd07981 TAF12 TATA Binding Pro 98.5 1.6E-07 3.4E-12 72.8 5.8 59 112-180 7-65 (72)
25 PF00808 CBFD_NFYB_HMF: Histon 98.4 4.4E-07 9.6E-12 68.3 6.0 64 231-294 2-65 (65)
26 PLN00035 histone H4; Provision 98.2 1.6E-06 3.6E-11 71.6 5.4 86 208-296 1-93 (103)
27 PTZ00018 histone H3; Provision 98.2 1.4E-06 3E-11 75.3 3.5 47 1-47 1-47 (136)
28 PLN00121 histone H3; Provision 98.2 1.5E-06 3.2E-11 75.2 3.5 47 1-47 1-47 (136)
29 PLN00161 histone H3; Provision 97.7 1.8E-05 4E-10 68.3 2.7 40 1-47 1-40 (135)
30 PTZ00015 histone H4; Provision 97.7 9.3E-05 2E-09 61.3 6.4 70 223-295 24-93 (102)
31 smart00803 TAF TATA box bindin 97.6 0.00022 4.7E-09 54.4 6.1 64 231-295 2-65 (65)
32 COG2036 HHT1 Histones H3 and H 97.3 0.00034 7.4E-09 56.8 4.9 66 229-295 17-82 (91)
33 smart00417 H4 Histone H4. 97.3 0.00024 5.1E-09 55.6 3.6 63 105-172 12-74 (74)
34 COG5208 HAP5 CCAAT-binding fac 97.3 0.00054 1.2E-08 63.5 6.2 75 230-304 108-182 (286)
35 KOG1657|consensus 97.2 0.00037 8E-09 65.7 4.2 79 229-307 72-150 (236)
36 cd00076 H4 Histone H4, one of 97.1 0.0014 3.1E-08 52.6 6.1 69 225-296 9-77 (85)
37 cd00076 H4 Histone H4, one of 97.1 0.00024 5.3E-09 57.0 1.4 59 106-169 13-71 (85)
38 PF00808 CBFD_NFYB_HMF: Histon 97.0 0.0011 2.4E-08 49.8 4.2 59 110-169 3-61 (65)
39 KOG0870|consensus 97.0 0.00033 7.1E-09 62.3 1.5 70 103-174 7-76 (172)
40 KOG1745|consensus 96.9 0.00074 1.6E-08 58.5 2.9 45 1-45 1-46 (137)
41 smart00803 TAF TATA box bindin 96.9 0.00091 2E-08 51.0 2.9 58 107-169 3-60 (65)
42 PTZ00015 histone H4; Provision 96.8 0.00054 1.2E-08 56.8 1.6 59 106-169 30-88 (102)
43 PLN00035 histone H4; Provision 96.8 0.0006 1.3E-08 56.5 1.7 58 107-169 30-87 (103)
44 smart00417 H4 Histone H4. 96.6 0.0032 6.9E-08 49.3 4.6 64 226-292 10-73 (74)
45 cd07981 TAF12 TATA Binding Pro 96.3 0.014 2.9E-07 45.2 6.2 65 233-297 3-67 (72)
46 PTZ00463 histone H2B; Provisio 96.0 0.017 3.7E-07 48.9 6.0 60 236-295 33-92 (117)
47 PLN00158 histone H2B; Provisio 95.9 0.019 4.2E-07 48.5 5.7 61 235-295 31-91 (116)
48 cd08048 TAF11 TATA Binding Pro 95.9 0.031 6.7E-07 44.9 6.6 63 232-295 17-82 (85)
49 cd07979 TAF9 TATA Binding Prot 95.5 0.033 7.1E-07 47.2 5.9 65 113-184 4-68 (117)
50 PF15630 CENP-S: Kinetochore c 95.4 0.014 3.1E-07 45.9 3.1 60 110-169 5-66 (76)
51 smart00427 H2B Histone H2B. 95.3 0.05 1.1E-06 44.1 5.9 60 236-295 6-65 (89)
52 PF15511 CENP-T: Centromere ki 94.7 0.027 5.9E-07 57.1 3.4 54 115-168 356-414 (414)
53 cd07979 TAF9 TATA Binding Prot 94.5 0.1 2.2E-06 44.1 6.0 61 236-297 6-66 (117)
54 KOG3219|consensus 94.3 0.055 1.2E-06 49.6 4.3 65 231-296 112-177 (195)
55 PF02969 TAF: TATA box binding 94.0 0.18 4E-06 38.6 5.9 64 231-295 3-66 (66)
56 PF04719 TAFII28: hTAFII28-lik 93.8 0.1 2.3E-06 42.3 4.6 63 232-295 24-88 (90)
57 smart00576 BTP Bromodomain tra 93.3 0.25 5.5E-06 38.4 5.8 49 128-182 23-71 (77)
58 cd00074 H2A Histone 2A; H2A is 93.1 0.11 2.4E-06 44.0 3.8 85 104-210 18-102 (115)
59 PF02969 TAF: TATA box binding 92.2 0.15 3.3E-06 39.0 3.1 53 115-168 8-60 (66)
60 cd08050 TAF6 TATA Binding Prot 92.0 0.24 5.2E-06 49.0 5.1 57 247-303 14-72 (343)
61 smart00428 H3 Histone H3. 90.6 0.52 1.1E-05 39.4 5.0 67 229-295 27-99 (105)
62 smart00576 BTP Bromodomain tra 90.4 0.9 2E-05 35.3 5.9 59 237-296 12-70 (77)
63 PF03847 TFIID_20kDa: Transcri 89.3 0.45 9.7E-06 36.6 3.3 51 118-168 7-57 (68)
64 PF02291 TFIID-31kDa: Transcri 88.5 1.1 2.3E-05 38.8 5.5 63 113-182 15-77 (129)
65 PF09415 CENP-X: CENP-S associ 88.0 2.2 4.8E-05 33.2 6.5 61 233-293 1-64 (72)
66 KOG1744|consensus 86.3 2.7 5.9E-05 36.2 6.6 69 224-295 33-101 (127)
67 PF15630 CENP-S: Kinetochore c 84.3 3.2 7E-05 32.6 5.7 48 253-300 26-76 (76)
68 KOG1142|consensus 83.9 1.8 4E-05 41.4 5.0 71 98-172 146-216 (258)
69 cd08050 TAF6 TATA Binding Prot 83.5 2.4 5.2E-05 42.0 5.9 61 115-182 4-64 (343)
70 KOG0871|consensus 80.0 5.4 0.00012 35.3 6.0 68 228-296 9-78 (156)
71 PF03847 TFIID_20kDa: Transcri 77.0 7.1 0.00015 30.0 5.3 62 236-297 4-65 (68)
72 KOG3467|consensus 75.6 6.1 0.00013 32.1 4.7 71 222-295 22-92 (103)
73 KOG0869|consensus 73.2 10 0.00022 33.9 6.0 66 230-295 31-97 (168)
74 PF07524 Bromo_TP: Bromodomain 70.1 2.3 5E-05 32.8 1.2 44 126-169 20-64 (77)
75 cd07978 TAF13 The TATA Binding 68.7 12 0.00026 30.4 5.1 36 263-299 31-69 (92)
76 cd08045 TAF4 TATA Binding Prot 63.9 11 0.00025 34.6 4.6 57 104-161 42-98 (212)
77 PF02269 TFIID-18kDa: Transcri 63.2 6.9 0.00015 31.7 2.7 62 113-174 4-65 (93)
78 PF02861 Clp_N: Clp amino term 61.1 7.3 0.00016 27.0 2.2 34 273-306 1-36 (53)
79 PLN00160 histone H3; Provision 60.6 18 0.00039 29.9 4.7 67 229-295 19-90 (97)
80 KOG1658|consensus 60.4 7.6 0.00017 34.6 2.6 76 230-305 58-133 (162)
81 KOG0870|consensus 60.0 25 0.00053 31.8 5.8 67 228-295 7-76 (172)
82 PF10911 DUF2717: Protein of u 59.0 12 0.00025 29.7 3.1 60 93-155 2-64 (77)
83 PF02291 TFIID-31kDa: Transcri 58.6 34 0.00073 29.6 6.2 58 235-296 16-76 (129)
84 KOG1658|consensus 57.5 12 0.00026 33.4 3.4 62 107-170 57-119 (162)
85 PF07524 Bromo_TP: Bromodomain 57.4 37 0.0008 26.0 5.8 48 248-295 22-69 (77)
86 PF05236 TAF4: Transcription i 54.2 10 0.00022 36.1 2.6 59 104-163 41-99 (264)
87 PF02269 TFIID-18kDa: Transcri 50.4 17 0.00036 29.5 2.9 42 259-300 26-70 (93)
88 COG5150 Class 2 transcription 49.1 29 0.00063 30.1 4.3 43 253-297 35-78 (148)
89 COG5251 TAF40 Transcription in 49.1 21 0.00045 32.5 3.6 64 232-296 116-180 (199)
90 KOG0871|consensus 47.7 11 0.00024 33.5 1.5 64 103-169 9-72 (156)
91 KOG3467|consensus 47.3 12 0.00027 30.3 1.7 39 133-171 51-89 (103)
92 COG5262 HTA1 Histone H2A [Chro 46.2 25 0.00055 30.1 3.5 56 123-184 39-94 (132)
93 PF04604 L_biotic_typeA: Type- 44.3 13 0.00027 27.3 1.2 22 296-320 16-37 (51)
94 COG5150 Class 2 transcription 43.2 34 0.00074 29.7 3.8 62 103-167 8-69 (148)
95 KOG1142|consensus 43.0 28 0.0006 33.5 3.6 69 231-299 154-222 (258)
96 COG5094 TAF9 Transcription ini 42.3 30 0.00064 30.0 3.3 57 133-190 36-92 (145)
97 PF15511 CENP-T: Centromere ki 38.3 41 0.00089 34.3 4.3 72 218-289 338-414 (414)
98 KOG0787|consensus 38.2 8.9 0.00019 38.9 -0.5 62 253-317 252-315 (414)
99 PF12096 DUF3572: Protein of u 34.8 82 0.0018 25.6 4.6 55 235-294 22-80 (88)
100 KOG0869|consensus 34.3 35 0.00075 30.7 2.6 71 91-172 24-95 (168)
101 PLN00158 histone H2B; Provisio 31.5 1.6E+02 0.0034 25.2 5.9 55 110-168 27-85 (116)
102 PTZ00017 histone H2A; Provisio 31.1 35 0.00076 29.8 2.1 85 104-210 25-109 (134)
103 smart00427 H2B Histone H2B. 30.6 1.8E+02 0.0039 23.7 5.9 53 111-167 2-58 (89)
104 PF15510 CENP-W: Centromere ki 29.2 1.4E+02 0.003 24.6 5.0 63 232-294 17-93 (102)
105 KOG3334|consensus 26.8 36 0.00078 30.1 1.4 58 115-179 18-75 (148)
106 PLN00163 histone H4; Provision 26.6 27 0.00059 26.3 0.5 27 223-252 23-49 (59)
107 smart00414 H2A Histone 2A. 24.8 50 0.0011 27.5 1.9 85 104-210 7-91 (106)
108 PF13654 AAA_32: AAA domain; P 24.8 62 0.0013 34.0 3.0 59 231-296 447-505 (509)
109 PTZ00463 histone H2B; Provisio 24.6 2.3E+02 0.0051 24.2 5.8 55 111-169 29-87 (117)
110 PF13335 Mg_chelatase_2: Magne 24.2 90 0.002 25.2 3.2 47 249-295 42-94 (96)
111 cd05031 S-100A10_like S-100A10 23.8 1.5E+02 0.0033 23.1 4.5 55 262-316 3-69 (94)
112 KOG3901|consensus 22.9 1.3E+02 0.0028 25.3 3.9 34 261-298 40-73 (109)
113 PLN00153 histone H2A; Provisio 22.7 64 0.0014 28.0 2.2 85 105-211 23-107 (129)
114 PRK11034 clpA ATP-dependent Cl 22.1 94 0.002 34.4 3.8 41 266-306 6-46 (758)
115 COG3636 Predicted transcriptio 21.2 1.3E+02 0.0028 25.1 3.5 53 253-305 22-83 (100)
116 cd05026 S-100Z S-100Z: S-100Z 20.3 2E+02 0.0044 22.7 4.5 54 262-315 5-70 (93)
No 1
>PTZ00018 histone H3; Provisional
Probab=100.00 E-value=3.3e-50 Score=343.67 Aligned_cols=133 Identities=87% Similarity=1.185 Sum_probs=125.9
Q ss_pred ccccccccccccCCCCCcchhhhhhhhcCCCCCCCCCCCCccCCCcchhhhhhhhccchhhhhccCchhHHHHHHHhhcc
Q psy7425 45 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 124 (331)
Q Consensus 45 MARtKqtarkstg~kaprk~~a~k~~~k~~p~~~~~~~~~r~~pg~~al~EIr~yq~st~lli~k~pF~rlvrei~~~~~ 124 (331)
|||||+++++++++++|+++.+.++++++.+.+++.++++||+||++||+|||+||+||+|||||+||+||||||+++|.
T Consensus 1 MaRtk~~~~k~~~~~~prk~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~ 80 (136)
T PTZ00018 1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_pred CCCCCcCccCCCCCCCCcccccccccccCCCCCCCCCCCcccCCchhHHHHHHHHcccchhccccccHHHHHHHHHHHcC
Confidence 99999999999999999999988888887777888999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHh
Q psy7425 125 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAAR 183 (331)
Q Consensus 125 ~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~ 183 (331)
+++|||++||+|||||+|+|||+||||+|+|++||||||||++ |||||.++..
T Consensus 81 ~~~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~k------D~~L~~rirg 133 (136)
T PTZ00018 81 TDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK------DIQLARRIRG 133 (136)
T ss_pred CcceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchh------hHHHHHHhcc
Confidence 9999999999999999999999999999999999999999998 5688876643
No 2
>PLN00121 histone H3; Provisional
Probab=100.00 E-value=4e-50 Score=343.16 Aligned_cols=135 Identities=87% Similarity=1.174 Sum_probs=127.3
Q ss_pred ccccccccccccCCCCCcchhhhhhhhcCCCCCCCCCCCCccCCCcchhhhhhhhccchhhhhccCchhHHHHHHHhhcc
Q psy7425 45 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 124 (331)
Q Consensus 45 MARtKqtarkstg~kaprk~~a~k~~~k~~p~~~~~~~~~r~~pg~~al~EIr~yq~st~lli~k~pF~rlvrei~~~~~ 124 (331)
|||||+++++++++++|+++.+.++.+++.+..++.+++|||+||++||+|||+||+||+|||||+||+||||||+++|.
T Consensus 1 MaRtk~~~~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~ 80 (136)
T PLN00121 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_pred CCCCCcCccCCCCCCCCcccccccccccCCCCCCCCCCCcccCchhHHHHHHHHhccccccccccccHHHHHHHHHHHhC
Confidence 99999999999999999999988888888778888999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHhcc
Q psy7425 125 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAARKS 185 (331)
Q Consensus 125 ~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~~~ 185 (331)
+++|||++||+|||||+|+|||+||||+|+|++||||||||++ ||+|+.++...+
T Consensus 81 ~~~Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~k------D~~L~~rirg~~ 135 (136)
T PLN00121 81 TDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK------DIQLARRIRGER 135 (136)
T ss_pred ccceeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchh------hHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999998 668888765443
No 3
>PLN00161 histone H3; Provisional
Probab=100.00 E-value=2.7e-49 Score=336.51 Aligned_cols=129 Identities=56% Similarity=0.792 Sum_probs=118.3
Q ss_pred ccccccccccccCCCCCcchhhhhhhhcCCCCCCCCCCCCccCCCcchhhhhhhhccchhhhhccCchhHHHHHHHhhcc
Q psy7425 45 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 124 (331)
Q Consensus 45 MARtKqtarkstg~kaprk~~a~k~~~k~~p~~~~~~~~~r~~pg~~al~EIr~yq~st~lli~k~pF~rlvrei~~~~~ 124 (331)
||||||+ +++++|+.|++++..+ ...++.+++|||+||+|||+|||+||+||+|||||+||+||||||++++.
T Consensus 1 mar~k~~-~~~~~~~~~~~~~~~~------~~~~~~kk~~r~rpGtvaLrEIR~yQkst~lLIpklPF~RLVREI~~~~~ 73 (135)
T PLN00161 1 MARRLQG-KRFRKGKKPQKEASGV------TRQELDKKPHRYRPGTVALREIRKYQKSTELLIRKLPFARLVREISNEML 73 (135)
T ss_pred CCccccc-ccccCCCCCcccCCCC------CCCCCCCCCccCCCcchHHHHHHHHccccccccccccHHHHHHHHHHhcC
Confidence 9999999 7778888898876543 24567789999999999999999999999999999999999999999996
Q ss_pred -ccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHhccC
Q psy7425 125 -TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAARKSA 186 (331)
Q Consensus 125 -~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~~~~ 186 (331)
+++|||++||+|||||+|+|||+||||+|+||+||||||||++ ||+||.++...+.
T Consensus 74 ~~~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~k------Dm~La~rirg~~~ 130 (135)
T PLN00161 74 REPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPK------DMQLARRIRGPIY 130 (135)
T ss_pred CCCcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchh------hHHHHHHhccccc
Confidence 5899999999999999999999999999999999999999998 7799998877766
No 4
>PLN00153 histone H2A; Provisional
Probab=100.00 E-value=6.1e-48 Score=326.57 Aligned_cols=123 Identities=76% Similarity=1.137 Sum_probs=117.3
Q ss_pred ccCCCCCCCCCCcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccch
Q psy7425 208 QGGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIP 287 (331)
Q Consensus 208 ~sg~gk~~k~~~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP 287 (331)
|+|+|++++..++..|+|+|||||||||||+|||++++|+.||+++|||||+||||||++||||||+|+|+++++++|+|
T Consensus 1 m~g~~~~~~~~~k~~srS~ragL~FpVgRi~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItP 80 (129)
T PLN00153 1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVP 80 (129)
T ss_pred CCCCCCCCccccCccCcccccCcccchHHHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCh
Confidence 78888876666688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCcHHHhhhhcCcEecCCcccCCcccccCCcccccC
Q psy7425 288 RHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 330 (331)
Q Consensus 288 ~hi~~AI~nDeEL~~L~~~~tia~gGv~p~i~~~l~~~~~~~~ 330 (331)
+||++||+||+|||+||++|||++|||+|+||++|+++|+.++
T Consensus 81 rHi~lAI~nDeEL~~Ll~~vTIa~GGV~P~i~~~l~~kk~~~~ 123 (129)
T PLN00153 81 RHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGG 123 (129)
T ss_pred HHHHhhccCcHHHHHHHCCCccCCCccCCCcchhhcCcccCCC
Confidence 9999999999999999999999999999999999999987553
No 5
>KOG1745|consensus
Probab=100.00 E-value=5.9e-48 Score=328.35 Aligned_cols=131 Identities=86% Similarity=1.163 Sum_probs=122.6
Q ss_pred ccccccccccccCCCCCcchhhhhhhhcC-CCCCCCCCCCCccCCCcchhhhhhhhccchhhhhccCchhHHHHHHHhhc
Q psy7425 45 MARTKQTARKSTGGKAPRKQLATKAARKS-APATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF 123 (331)
Q Consensus 45 MARtKqtarkstg~kaprk~~a~k~~~k~-~p~~~~~~~~~r~~pg~~al~EIr~yq~st~lli~k~pF~rlvrei~~~~ 123 (331)
|+|+++++++++++++|++..+.+..++. .|..+...+++||+||+++|+|||+||+||+|||+|+|||||||||+++|
T Consensus 1 m~r~~~t~~k~~~~~~~r~~~a~~~~~~~~~~~~~~~~k~~r~rpg~~al~eirkyQkstdLlI~K~PFqRlvrei~q~f 80 (137)
T KOG1745|consen 1 MARTKQTARKSTGGKAPRKQLAGKAARKSAAPRTGRVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDF 80 (137)
T ss_pred CCCCCcccccccCCCCCccccccccccccccccccccCccccccCchHHHHHHHHHHhhhHHHhhcCcHHHHhHHHHhcc
Confidence 78999999999999999999998888766 34566778999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHH
Q psy7425 124 KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKA 181 (331)
Q Consensus 124 ~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~ 181 (331)
.+|||||+.||.|||||+|+|||+||||+||||+|||||||||+ |||||.++
T Consensus 81 ~~dLrfqs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTimpk------diQlArri 132 (137)
T KOG1745|consen 81 KTDLRFQSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPK------DIQLARRI 132 (137)
T ss_pred cccceehHHHHHHHHHHHHHHHHHhccccchhhhccceeEeccc------ceehhhhc
Confidence 99999999999999999999999999999999999999999998 67777654
No 6
>PLN00157 histone H2A; Provisional
Probab=100.00 E-value=2.9e-47 Score=323.59 Aligned_cols=123 Identities=76% Similarity=1.167 Sum_probs=116.5
Q ss_pred ccCCCC--CCCCCCcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCccc
Q psy7425 208 QGGRGK--GGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRI 285 (331)
Q Consensus 208 ~sg~gk--~~k~~~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rI 285 (331)
|+|+|+ +++.+++..|+|+|||||||||||+|||++++|+.||+++|||||+||||||++||||||+|+|+++++++|
T Consensus 1 ms~~g~~~~~~~~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RI 80 (132)
T PLN00157 1 MSGRGKRKGGGGGKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRI 80 (132)
T ss_pred CCCCCCCCCCccCcCCcCcccccCcccchHHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 678877 456667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhCcHHHhhhhcCcEecCCcccCCcccccCCcccccC
Q psy7425 286 IPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 330 (331)
Q Consensus 286 tP~hi~~AI~nDeEL~~L~~~~tia~gGv~p~i~~~l~~~~~~~~ 330 (331)
+|+||++||+||+||++||++|||++|||+|+||++|+++|..++
T Consensus 81 tPrHi~lAI~nDeEL~~Ll~~vtIa~GGV~P~i~~~ll~kk~~~~ 125 (132)
T PLN00157 81 VPRHIQLAVRNDEELSKLLGGVTIAAGGVLPNIHSVLLPKKSGKS 125 (132)
T ss_pred cHHHHhhcccCcHHHHHHHcCceecCCccCCCcchhhcCCCCCCC
Confidence 999999999999999999999999999999999999999987543
No 7
>PLN00156 histone H2AX; Provisional
Probab=100.00 E-value=6e-46 Score=317.40 Aligned_cols=118 Identities=76% Similarity=1.146 Sum_probs=112.5
Q ss_pred CCCCCCCCcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHH
Q psy7425 212 GKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQ 291 (331)
Q Consensus 212 gk~~k~~~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~ 291 (331)
|+|++++++..|+|+|||||||||||+|||++++|+.||+++|||||+||||||++||||||+|+|+++++++|+|+||+
T Consensus 10 ~~g~~~~~k~~srS~rAgL~FPVgRi~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~ 89 (139)
T PLN00156 10 GRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQ 89 (139)
T ss_pred CCCcccccCCcCcccccCcccchHHHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHH
Confidence 44555667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCcHHHhhhhcCcEecCCcccCCcccccCCccccc
Q psy7425 292 LAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 329 (331)
Q Consensus 292 ~AI~nDeEL~~L~~~~tia~gGv~p~i~~~l~~~~~~~ 329 (331)
+||+||+|||.||++|||++|||+|+||++|+|+|+.+
T Consensus 90 lAIrnDeEL~~Ll~~vTIa~GGV~P~i~~~l~~kk~~~ 127 (139)
T PLN00156 90 LAVRNDEELSKLLGSVTIAAGGVLPNIHQTLLPKKVGK 127 (139)
T ss_pred hhccCcHHHHHHHCCCccCCCccCCCccHhhccccccc
Confidence 99999999999999999999999999999999998754
No 8
>PTZ00017 histone H2A; Provisional
Probab=100.00 E-value=1.1e-45 Score=315.00 Aligned_cols=113 Identities=79% Similarity=1.196 Sum_probs=109.3
Q ss_pred CCcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCc
Q psy7425 218 KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 297 (331)
Q Consensus 218 ~~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nD 297 (331)
+++..|+|+|||||||||||+|||++++|+.||+++|||||+||||||++||||||+|+|+++++++|+|+||++||+||
T Consensus 14 ~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~nD 93 (134)
T PTZ00017 14 KKKPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIRND 93 (134)
T ss_pred CcCcccccccCCcccchHHHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhccCc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCcEecCCcccCCcccccCCcccccC
Q psy7425 298 EELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 330 (331)
Q Consensus 298 eEL~~L~~~~tia~gGv~p~i~~~l~~~~~~~~ 330 (331)
+|||+||+++||++|||+|+||++|+++++.++
T Consensus 94 eEL~~Ll~~vtIa~GGV~P~i~~~l~~k~~~~~ 126 (134)
T PTZ00017 94 EELNKLLAGVTIASGGVLPNIHKVLLPKKSKPK 126 (134)
T ss_pred HHHHHHHcCCcccCCccCCCccHhhccCCCCcc
Confidence 999999999999999999999999999988654
No 9
>PTZ00252 histone H2A; Provisional
Probab=100.00 E-value=6e-45 Score=308.91 Aligned_cols=108 Identities=51% Similarity=0.879 Sum_probs=103.0
Q ss_pred cCcc-ccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhh--cCCcccchHHHHHHhhC
Q psy7425 220 KSKT-RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD--NKKTRIIPRHLQLAIRN 296 (331)
Q Consensus 220 ~~~s-rs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~--~~k~rItP~hi~~AI~n 296 (331)
+..+ +|+|||||||||||+|||++++|+.||+++|||||+||||||++||||||+|+|++ ++++||+|+||++||+|
T Consensus 13 ~~~~~rS~rAGL~FPVgRi~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIrN 92 (134)
T PTZ00252 13 KSGSGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVRH 92 (134)
T ss_pred ccccccccccCccCchHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhccC
Confidence 4455 99999999999999999999999999999999999999999999999999999976 78899999999999999
Q ss_pred cHHHhhhhcCcEecCCcccCCcccccCCccc
Q psy7425 297 DEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 327 (331)
Q Consensus 297 DeEL~~L~~~~tia~gGv~p~i~~~l~~~~~ 327 (331)
|+|||+||++|||++|||+|+||++|+++++
T Consensus 93 DeEL~~Ll~~vTIa~GGVlP~i~~~l~~k~~ 123 (134)
T PTZ00252 93 DDDLGSLLKNVTLSRGGVMPSLNKALAKKHK 123 (134)
T ss_pred hHHHHHHHcCCccCCCccCCCccHhhccccc
Confidence 9999999999999999999999999999943
No 10
>KOG1756|consensus
Probab=100.00 E-value=2.2e-44 Score=301.44 Aligned_cols=122 Identities=86% Similarity=1.246 Sum_probs=114.8
Q ss_pred ccCCCCCCCCC---CcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcc
Q psy7425 208 QGGRGKGGKAK---TKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR 284 (331)
Q Consensus 208 ~sg~gk~~k~~---~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~r 284 (331)
|+|++++|+.+ ++..|+|.++|||||||||+|+|++++|.+||+.+|||||+||||||++||||+|+|+|+|+++.+
T Consensus 1 ~s~~~k~gk~~~~~~~~~srs~~agl~fPvgri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~r 80 (131)
T KOG1756|consen 1 MSGRGKGGKAKPRAKAKSSRSSRAGLQFPVGRIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR 80 (131)
T ss_pred CCccCCCCcccchhhhhcchhhhcccccCHHHHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccc
Confidence 56777777654 356688999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHhhCcHHHhhhhcCcEecCCcccCCcccccCCccccc
Q psy7425 285 IIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 329 (331)
Q Consensus 285 ItP~hi~~AI~nDeEL~~L~~~~tia~gGv~p~i~~~l~~~~~~~ 329 (331)
|+|+||++||+|||||++|+++|||++|||+|+||+.||||+..+
T Consensus 81 i~PrH~~lAI~NDeEL~~lL~~vtIa~GGvlPnI~~~lLpKk~~~ 125 (131)
T KOG1756|consen 81 ITPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAILLPKKTGK 125 (131)
T ss_pred cChHHHHHHHhCcHHHHHHhccceeccCCcccccchhhccccccc
Confidence 999999999999999999999999999999999999999998765
No 11
>PLN00154 histone H2A; Provisional
Probab=100.00 E-value=7e-44 Score=303.43 Aligned_cols=112 Identities=63% Similarity=0.911 Sum_probs=106.4
Q ss_pred CCCcCccccccCCcccchhhHHHhhhcCC-cccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 217 AKTKSKTRSSRAGLQFPVGRIHRLLRKGN-YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 217 ~~~~~~srs~ragL~FPVsri~R~Lk~~~-~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
.+++..|+|+|||||||||||+|+|++++ |.+||+++|||||+||||||++||||||||+|++++++||+|+||++||+
T Consensus 24 ~~~k~~srS~rAgL~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIr 103 (136)
T PLN00154 24 DKKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
T ss_pred CCcCCcCcccccCccCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhcc
Confidence 34578999999999999999999999997 57899999999999999999999999999999999999999999999999
Q ss_pred CcHHHhhhhcCcEecCCcccCCcccccCCccccc
Q psy7425 296 NDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 329 (331)
Q Consensus 296 nDeEL~~L~~~~tia~gGv~p~i~~~l~~~~~~~ 329 (331)
||+||++||+ +||++|||+|+||++|+++++++
T Consensus 104 nDeEL~~Ll~-~TIa~GGVlP~i~~~l~~k~~~~ 136 (136)
T PLN00154 104 GDEELDTLIK-GTIAGGGVIPHIHKSLINKSTKK 136 (136)
T ss_pred CcHHHHHHhc-CCccCCccCCCcchhhcccccCC
Confidence 9999999997 69999999999999999998754
No 12
>smart00414 H2A Histone 2A.
Probab=100.00 E-value=3e-43 Score=290.86 Aligned_cols=106 Identities=89% Similarity=1.290 Sum_probs=103.8
Q ss_pred cccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhh
Q psy7425 223 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNK 302 (331)
Q Consensus 223 srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~ 302 (331)
|+|+|||||||||||+|||++++|+.||+++|+|||+||||||++||||||+|+|+++++++|+|+||++||+||+|||+
T Consensus 1 srS~ragL~fPVgRi~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~nD~EL~~ 80 (106)
T smart00414 1 SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRNDEELNK 80 (106)
T ss_pred CccccCCccCchHHHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhccCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcEecCCcccCCcccccCCcccc
Q psy7425 303 LLSGVTIAQGGVLPNIQAVLLPKKTE 328 (331)
Q Consensus 303 L~~~~tia~gGv~p~i~~~l~~~~~~ 328 (331)
||++|||++|||+|+||++|+++|+.
T Consensus 81 L~~~vti~~ggv~p~i~~~l~~~~~~ 106 (106)
T smart00414 81 LLKGVTIAQGGVLPNIHKVLLPKKTG 106 (106)
T ss_pred HHcCcccCCCccCCCcchhhcccCCC
Confidence 99999999999999999999999863
No 13
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=100.00 E-value=2.8e-42 Score=288.69 Aligned_cols=112 Identities=84% Similarity=1.255 Sum_probs=108.3
Q ss_pred CCCCCcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHh
Q psy7425 215 GKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAI 294 (331)
Q Consensus 215 ~k~~~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI 294 (331)
||.+++..|+|+||||+|||+||+|||+++.|+.|||++|+|||+||||||++||||+|+|.|+++++++|+|+||++||
T Consensus 4 ~k~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi 83 (115)
T cd00074 4 GKKKSKKRSRSARAGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAV 83 (115)
T ss_pred CccCcCccccccccCccCcHHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHH
Confidence 36667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCcHHHhhhhcCcEecCCcccCCcccccCCcc
Q psy7425 295 RNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 326 (331)
Q Consensus 295 ~nDeEL~~L~~~~tia~gGv~p~i~~~l~~~~ 326 (331)
+||+|||+||+++||++|||+|+||++|++++
T Consensus 84 ~nD~EL~~L~~~vtI~~ggv~p~i~~~l~~~~ 115 (115)
T cd00074 84 RNDEELNKLLKGVTIASGGVLPNIHKVLLPKK 115 (115)
T ss_pred hccHHHHHHHcCCcccCCccCCCcchhhcCCC
Confidence 99999999999999999999999999999875
No 14
>PLN00160 histone H3; Provisional
Probab=100.00 E-value=3.5e-42 Score=279.22 Aligned_cols=91 Identities=60% Similarity=0.893 Sum_probs=86.4
Q ss_pred cCCCcchhhhhhhhccchhhhhccCchhHHHHHHHhhcc-ccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceee
Q psy7425 86 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTA 164 (331)
Q Consensus 86 ~~pg~~al~EIr~yq~st~lli~k~pF~rlvrei~~~~~-~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi 164 (331)
|+||++||+|||+||+||+|||||+||+||||||++++. +++|||++||+|||||+|+|||+||||+|+|++|||||||
T Consensus 1 ~rpGt~aLrEIR~yQkst~lLI~k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl 80 (97)
T PLN00160 1 MRPGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTI 80 (97)
T ss_pred CCCccHHHHHHHHHccchhhhhccccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccc
Confidence 689999999999999999999999999999999999986 5699999999999999999999999999999999999999
Q ss_pred ecCCCCCCchHHHHHHHH
Q psy7425 165 RKSTGGKAPRKQLATKAA 182 (331)
Q Consensus 165 ~~~d~~~a~~~~~~~~~~ 182 (331)
|++ |||||.++.
T Consensus 81 ~~k------D~~L~~rir 92 (97)
T PLN00160 81 MPK------DMQLARRIR 92 (97)
T ss_pred chh------hHHHHHHhh
Confidence 998 678887654
No 15
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=100.00 E-value=9.5e-42 Score=281.68 Aligned_cols=119 Identities=78% Similarity=1.167 Sum_probs=110.2
Q ss_pred CCCCCC-CC-CcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchH
Q psy7425 211 RGKGGK-AK-TKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 288 (331)
Q Consensus 211 ~gk~~k-~~-~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~ 288 (331)
.||||| .. +-..|+|.++||+||||||+|+|+.++|..||+++|+||++||||||++||||+|+|+|+++++++|+|+
T Consensus 4 ~GKGgK~a~~r~~~s~sa~agl~fpvgrvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~Pr 83 (132)
T COG5262 4 GGKGGKAADARVSQSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPR 83 (132)
T ss_pred CCcCcccccchhccchhhhcCccccHHHHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechH
Confidence 345666 33 3456999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCcHHHhhhhcCcEecCCcccCCcccccCCccccc
Q psy7425 289 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 329 (331)
Q Consensus 289 hi~~AI~nDeEL~~L~~~~tia~gGv~p~i~~~l~~~~~~~ 329 (331)
|||+||+||+||++|++||||++|||+|||++.||++...+
T Consensus 84 HlqlAIrnD~EL~~l~~~~tIa~GGvlp~I~~~ll~k~skK 124 (132)
T COG5262 84 HLQLAIRNDEELNKLLGDVTIAQGGVLPNINPGLLPKSSKK 124 (132)
T ss_pred HHHHHhcCcHHHHHHhhhheeecCCcccccChhhhhhhhcc
Confidence 99999999999999999999999999999999999876544
No 16
>smart00428 H3 Histone H3.
Probab=100.00 E-value=9.8e-42 Score=280.77 Aligned_cols=98 Identities=76% Similarity=1.030 Sum_probs=92.7
Q ss_pred CCCCCCccCCCcchhhhhhhhccchhhhhccCchhHHHHHHHhhccc--cccccHHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy7425 79 GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT--DLRFQSSAVMALQEASEAYLVGLFEDTNLCA 156 (331)
Q Consensus 79 ~~~~~~r~~pg~~al~EIr~yq~st~lli~k~pF~rlvrei~~~~~~--~~r~~~~al~aLQea~E~~lv~lfed~~lca 156 (331)
+.+++|||+||++||+|||+||+||+|||||+||+||||||++++.+ ++|||++||+|||||+|+|||++|||+|+||
T Consensus 2 ~~~~~~r~rpg~~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a 81 (105)
T smart00428 2 GKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLA 81 (105)
T ss_pred CCCCCcCCCCcchHHHHHHHHccCcccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999987 9999999999999999999999999999999
Q ss_pred hhcCceeeecCCCCCCchHHHHHHHH
Q psy7425 157 IHAKRQTARKSTGGKAPRKQLATKAA 182 (331)
Q Consensus 157 ~HakRvTi~~~d~~~a~~~~~~~~~~ 182 (331)
+||||||||++ ||+||.++.
T Consensus 82 ~HAkRvTl~~k------Di~La~rir 101 (105)
T smart00428 82 IHAKRVTIMPK------DIQLARRIR 101 (105)
T ss_pred HHhCCccCcHh------hHHHHHHHh
Confidence 99999999998 668887553
No 17
>KOG1757|consensus
Probab=100.00 E-value=1.1e-36 Score=249.96 Aligned_cols=112 Identities=63% Similarity=0.928 Sum_probs=104.9
Q ss_pred CCcCccccccCCcccchhhHHHhhhcCCc-ccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhC
Q psy7425 218 KTKSKTRSSRAGLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 296 (331)
Q Consensus 218 ~~~~~srs~ragL~FPVsri~R~Lk~~~~-~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~n 296 (331)
+.+..|+|.|+||||||+||||+|+.... ..||++.+.||++|+||||++|+||||||++++.+.+||||+|||+||+.
T Consensus 17 ~~k~vs~s~raGlqFpVgRihr~LK~r~t~h~rVGataavy~aaileYLTaEVLeLAgNasKdLKvKRitprHlqLAiRG 96 (131)
T KOG1757|consen 17 KAKAVSRSARAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 96 (131)
T ss_pred hhhhhhHHHhcccccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHcccccccceeeeccchhheeeecC
Confidence 36788999999999999999999998764 47999999999999999999999999999999999999999999999999
Q ss_pred cHHHhhhhcCcEecCCcccCCcccccCCcccccC
Q psy7425 297 DEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 330 (331)
Q Consensus 297 DeEL~~L~~~~tia~gGv~p~i~~~l~~~~~~~~ 330 (331)
|||||.|++. ||++|||+||||++|+.|++.+.
T Consensus 97 DeELDtLIk~-TiagGgViPhihk~l~~k~~~~~ 129 (131)
T KOG1757|consen 97 DEELDTLIKA-TIAGGGVIPHIHKSLINKKGKKK 129 (131)
T ss_pred cHHHHHHHHH-hhccCccccchHHHHhccccccC
Confidence 9999999964 89999999999999999887653
No 18
>PLN00155 histone H2A; Provisional
Probab=99.84 E-value=1.3e-21 Score=144.36 Aligned_cols=58 Identities=69% Similarity=1.149 Sum_probs=53.5
Q ss_pred ccCCCCCCCCCCcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHH
Q psy7425 208 QGGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL 265 (331)
Q Consensus 208 ~sg~gk~~k~~~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL 265 (331)
|+|+|++++..++..|+|++||||||||||+|+|++++|+.||+++|||||+||||||
T Consensus 1 msg~g~g~~~~~k~~srS~rAgL~FPVgri~r~Lr~g~~a~Rvga~apVYlAAVLEYL 58 (58)
T PLN00155 1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58 (58)
T ss_pred CCCCCCCCccccCccCcccccccccchHHHHHHHhcCChhhcccCCcHHHHHHHHHhC
Confidence 6788876665667899999999999999999999999999999999999999999997
No 19
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=99.82 E-value=1.3e-20 Score=151.89 Aligned_cols=84 Identities=48% Similarity=0.670 Sum_probs=78.9
Q ss_pred CCcchhhhhhhhccchhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecC
Q psy7425 88 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKS 167 (331)
Q Consensus 88 pg~~al~EIr~yq~st~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~ 167 (331)
||.++++|||+||++++++||++||+|++|+...+ ||+.+|+++|||+.|.|++.++||++.||.|++|+||+++
T Consensus 1 ~~~~~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~-----Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~ 75 (91)
T COG2036 1 PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-----RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAE 75 (91)
T ss_pred CCcchHHHHHhhhhhhhhhcCchHHHHHHHHHhHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHH
Confidence 68899999999999999999999999999999776 9999999999999999999999999999999999999997
Q ss_pred CCCCCchHHHHHHHH
Q psy7425 168 TGGKAPRKQLATKAA 182 (331)
Q Consensus 168 d~~~a~~~~~~~~~~ 182 (331)
||+||-+..
T Consensus 76 ------DI~la~~~~ 84 (91)
T COG2036 76 ------DIKLALKRL 84 (91)
T ss_pred ------HHHHHHHHh
Confidence 777776654
No 20
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=99.60 E-value=8.4e-16 Score=118.51 Aligned_cols=75 Identities=40% Similarity=0.534 Sum_probs=70.2
Q ss_pred chhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHH
Q psy7425 102 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKA 181 (331)
Q Consensus 102 st~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~ 181 (331)
+|+++|+++||.|+++||..++..+++|+++|+.+||++.|+|++.+||+++.||.|+||+||+++ |||+|.++
T Consensus 1 ~~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~------DI~~A~r~ 74 (75)
T PF00125_consen 1 RTRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPR------DIQLAVRI 74 (75)
T ss_dssp HHSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHH------HHHHHHHH
T ss_pred CcccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHH------HHHHHHhc
Confidence 467899999999999999999888899999999999999999999999999999999999999997 88888765
Q ss_pred H
Q psy7425 182 A 182 (331)
Q Consensus 182 ~ 182 (331)
+
T Consensus 75 ~ 75 (75)
T PF00125_consen 75 D 75 (75)
T ss_dssp T
T ss_pred C
Confidence 3
No 21
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=99.32 E-value=1.5e-12 Score=100.28 Aligned_cols=73 Identities=41% Similarity=0.607 Sum_probs=68.5
Q ss_pred cccCCcccchhhHHHhhhcCCccc-ccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCc
Q psy7425 225 SSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 297 (331)
Q Consensus 225 s~ragL~FPVsri~R~Lk~~~~~~-Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nD 297 (331)
+....+.||+.|+.+-+..+.+.. ||+..|.+||.+++||++.+|+|+|++.|..+++.+|+|+||++|+++|
T Consensus 2 ~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~~ 75 (75)
T PF00125_consen 2 TRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRID 75 (75)
T ss_dssp HSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred cccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence 456788999999999999988775 9999999999999999999999999999999999999999999999876
No 22
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Probab=99.18 E-value=3.8e-11 Score=97.84 Aligned_cols=82 Identities=22% Similarity=0.419 Sum_probs=75.6
Q ss_pred ccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhhhhcCcEec
Q psy7425 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIA 310 (331)
Q Consensus 231 ~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~L~~~~tia 310 (331)
.||++||+++|+.+.....|+..+||..+-.||+++.+|+.+++.+|+..+.+|||.+||..|+.+||.|++|-..+-+-
T Consensus 23 rFP~ar~KkIMQ~deDiGKV~q~tPVIaskalE~Fl~~iv~~s~k~aR~~~skR~t~e~lk~a~~sdekFdFL~~~~~~~ 102 (113)
T COG5247 23 RFPIARLKKIMQLDEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFLKRATESDEKFDFLKNMEQFK 102 (113)
T ss_pred cCCHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999986443333
Q ss_pred CC
Q psy7425 311 QG 312 (331)
Q Consensus 311 ~g 312 (331)
.+
T Consensus 103 ~~ 104 (113)
T COG5247 103 NR 104 (113)
T ss_pred CC
Confidence 33
No 23
>KOG1659|consensus
Probab=98.80 E-value=7.7e-09 Score=94.52 Aligned_cols=74 Identities=20% Similarity=0.412 Sum_probs=72.1
Q ss_pred ccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhhhh
Q psy7425 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 304 (331)
Q Consensus 231 ~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~L~ 304 (331)
.||++||+++|+.+....+|...+||.+.-.||.|+.+|+..++.+++..+-++++++||..||.+|+.|++|=
T Consensus 13 rfp~aRiKKIMQ~dEdIGKvaqavPViisralElFl~~l~~~t~~~t~~~~aKt~s~~hlkq~v~~~~~FdFLk 86 (224)
T KOG1659|consen 13 RFPPARIKKIMQSDEDIGKVAQAVPVIISRALELFLESLLQKTLEITRSRGAKTVSSSHLKQAVESDPKFDFLK 86 (224)
T ss_pred cCCHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCHHHHHHHHhccchhHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999885
No 24
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=98.54 E-value=1.6e-07 Score=72.78 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=50.6
Q ss_pred hhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHH
Q psy7425 112 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATK 180 (331)
Q Consensus 112 F~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~ 180 (331)
.+.||++| .+..|++.+|.++||+.+|+|+..+++++..||.|++|.||..+ |++|+-+
T Consensus 7 l~~lv~~i----d~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~------Di~l~l~ 65 (72)
T cd07981 7 LQELLKEI----DPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVK------DVQLHLE 65 (72)
T ss_pred HHHHHHhh----CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHH------HHHHHHH
Confidence 34555554 55699999999999999999999999999999999999998887 7777754
No 25
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=98.44 E-value=4.4e-07 Score=68.35 Aligned_cols=64 Identities=20% Similarity=0.288 Sum_probs=57.9
Q ss_pred ccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHh
Q psy7425 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAI 294 (331)
Q Consensus 231 ~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI 294 (331)
.||+++|.|+|+......+|+.+|..+++-+.|.++.+|...|...|..++++.|+++||..||
T Consensus 2 ~lP~a~vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 2 SLPLARVKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp SS-HHHHHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred CCChHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 5999999999999867789999999999999999999999999999999999999999999886
No 26
>PLN00035 histone H4; Provisional
Probab=98.24 E-value=1.6e-06 Score=71.65 Aligned_cols=86 Identities=22% Similarity=0.365 Sum_probs=70.0
Q ss_pred ccCCCCCCCC-------CCcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhc
Q psy7425 208 QGGRGKGGKA-------KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 280 (331)
Q Consensus 208 ~sg~gk~~k~-------~~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~ 280 (331)
|+|+|++|+. +.....+.+-+| +|..-|.|+++.+. ..|||.++-..|..+||.+..+|+.-|...+...
T Consensus 1 m~~~~k~~~g~g~~g~kr~~k~~~d~i~~--ipk~~IrRLARr~G-vkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA 77 (103)
T PLN00035 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA 77 (103)
T ss_pred CCCCCCCCCCCCCCcchHHHHHHHhhhcc--CCHHHHHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666665432 122233445556 77778999999876 7999999999999999999999999999999999
Q ss_pred CCcccchHHHHHHhhC
Q psy7425 281 KKTRIIPRHLQLAIRN 296 (331)
Q Consensus 281 ~k~rItP~hi~~AI~n 296 (331)
+++.|+.+||.+|+..
T Consensus 78 ~RKTV~~~DV~~Alkr 93 (103)
T PLN00035 78 RRKTVTAMDVVYALKR 93 (103)
T ss_pred CCCcCcHHHHHHHHHH
Confidence 9999999999999863
No 27
>PTZ00018 histone H3; Provisional
Probab=98.16 E-value=1.4e-06 Score=75.35 Aligned_cols=47 Identities=79% Similarity=1.004 Sum_probs=42.9
Q ss_pred CCCCccccccccCCCCCccchhhhhhcccCCCCCCCCCCCCCCcccc
Q psy7425 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHPSSSMAR 47 (331)
Q Consensus 1 MARTKqtarKstggkapRKqla~Kaarks~p~~ggvKKphRyrpMAR 47 (331)
|||||+++++++++++|++++++++..++.+.+|+.++||||+|...
T Consensus 1 MaRtk~~~~k~~~~~~prk~~~~~~~~~~~~~~~~~~~~~r~rpGt~ 47 (136)
T PTZ00018 1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTV 47 (136)
T ss_pred CCCCCcCccCCCCCCCCcccccccccccCCCCCCCCCCCcccCCchh
Confidence 99999999999999999999999888888878899999999999543
No 28
>PLN00121 histone H3; Provisional
Probab=98.16 E-value=1.5e-06 Score=75.25 Aligned_cols=47 Identities=85% Similarity=1.030 Sum_probs=43.0
Q ss_pred CCCCccccccccCCCCCccchhhhhhcccCCCCCCCCCCCCCCcccc
Q psy7425 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHPSSSMAR 47 (331)
Q Consensus 1 MARTKqtarKstggkapRKqla~Kaarks~p~~ggvKKphRyrpMAR 47 (331)
||||||++++++++++|++++++++..++.+.+|++++||||+|...
T Consensus 1 MaRtk~~~~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~r~rpGt~ 47 (136)
T PLN00121 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTV 47 (136)
T ss_pred CCCCCcCccCCCCCCCCcccccccccccCCCCCCCCCCCcccCchhH
Confidence 99999999999999999999999988888888899999999999543
No 29
>PLN00161 histone H3; Provisional
Probab=97.74 E-value=1.8e-05 Score=68.27 Aligned_cols=40 Identities=30% Similarity=0.305 Sum_probs=33.0
Q ss_pred CCCCccccccccCCCCCccchhhhhhcccCCCCCCCCCCCCCCcccc
Q psy7425 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHPSSSMAR 47 (331)
Q Consensus 1 MARTKqtarKstggkapRKqla~Kaarks~p~~ggvKKphRyrpMAR 47 (331)
||||||+ +++++|+.|+|+++.+ ...+++++||||+|...
T Consensus 1 mar~k~~-~~~~~~~~~~~~~~~~------~~~~~~kk~~r~rpGtv 40 (135)
T PLN00161 1 MARRLQG-KRFRKGKKPQKEASGV------TRQELDKKPHRYRPGTV 40 (135)
T ss_pred CCccccc-ccccCCCCCcccCCCC------CCCCCCCCCccCCCcch
Confidence 9999999 7888999999888764 14578999999999543
No 30
>PTZ00015 histone H4; Provisional
Probab=97.71 E-value=9.3e-05 Score=61.25 Aligned_cols=70 Identities=17% Similarity=0.308 Sum_probs=61.0
Q ss_pred cccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 223 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 223 srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
.+.+-.|| |..-|.|+++.+. .+|||.++-..+..+||.++.+|+.-|...|...+++.|+.+||.+|+.
T Consensus 24 ~r~~i~gI--~k~~IrRLarr~G-vkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlK 93 (102)
T PTZ00015 24 LRDNIRGI--TKGAIRRLARRGG-VKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALK 93 (102)
T ss_pred HhhcccCC--CHHHHHHHHHHcC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 44445564 5567999999864 5899999999999999999999999999999999999999999999975
No 31
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=97.56 E-value=0.00022 Score=54.38 Aligned_cols=64 Identities=22% Similarity=0.267 Sum_probs=59.0
Q ss_pred ccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 231 ~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
.+|..-|.++.+.... .||+.++...|+-.+||.+.||+.-|.+.++..+++.++++||..|++
T Consensus 2 ~~p~~~i~ria~~~Gi-~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 2 WLPKETIKDVAESLGI-GNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred CCCHHHHHHHHHHCCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 4788999999987654 699999999999999999999999999999999999999999999864
No 32
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=97.33 E-value=0.00034 Score=56.81 Aligned_cols=66 Identities=30% Similarity=0.418 Sum_probs=59.5
Q ss_pred CcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 229 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 229 gL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
.+-+|+.=|.|+|++.. ..|||.+|-..|..++|-++.+|.+.|...|...|++.|+++||++|+.
T Consensus 17 ~~~Lp~apv~Ri~r~~~-~~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~ 82 (91)
T COG2036 17 DLLLPKAPVRRILRKAG-AERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALK 82 (91)
T ss_pred hhhcCchHHHHHHHHHh-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 45677777999998754 4599999999999999999999999999999999999999999999976
No 33
>smart00417 H4 Histone H4.
Probab=97.31 E-value=0.00024 Score=55.64 Aligned_cols=63 Identities=21% Similarity=0.159 Sum_probs=56.2
Q ss_pred hhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCC
Q psy7425 105 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKA 172 (331)
Q Consensus 105 lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a 172 (331)
--|++.|..||+|. .+--|+..++.+.|.++.|.||-.+..|+...+.|++|-||...|+..|
T Consensus 12 ~gI~k~~IrRLaRr-----~GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~a 74 (74)
T smart00417 12 QGITKPAIRRLARR-----GGVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYA 74 (74)
T ss_pred cCCCHHHHHHHHHH-----cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHheeC
Confidence 34999999999873 3557999999999999999999999999999999999999999988654
No 34
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=97.28 E-value=0.00054 Score=63.48 Aligned_cols=75 Identities=23% Similarity=0.391 Sum_probs=71.3
Q ss_pred cccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhhhh
Q psy7425 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 304 (331)
Q Consensus 230 L~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~L~ 304 (331)
+.+|..||+++|+.+...+-|++.|||.++-+-|-+++|+--.|.-.|..|++..+.-.+|..||...|-+++|+
T Consensus 108 h~LPlARIkkvMKtdedVkMisaEaPvlFak~~EiFI~ELTmRAW~~ae~NkRRtLQksDia~Av~kSeMfDFLi 182 (286)
T COG5208 108 HNLPLARIKKVMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEENKRRTLQKSDIAAAVKKSEMFDFLI 182 (286)
T ss_pred ccCcHHHHHHHHhcccchhheecccchHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHhHHh
Confidence 358999999999999999999999999999999999999999999999999998899999999999999999998
No 35
>KOG1657|consensus
Probab=97.18 E-value=0.00037 Score=65.68 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=73.5
Q ss_pred CcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhhhhcCc
Q psy7425 229 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGV 307 (331)
Q Consensus 229 gL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~L~~~~ 307 (331)
-..||++||+++|+.+....-|+..|||.++-+.|+++.|+-..++..+..+++..+.-.||..+|.+.+-+++|+..+
T Consensus 72 ~~~lPlaRiKkimK~dedv~mI~~Eapvl~aka~E~Fi~elt~~sw~~Tee~~rrtl~~sdia~av~~s~~fdFL~Div 150 (236)
T KOG1657|consen 72 NHILPLARIKKIMKSDEDVSMITAEAPVLFAKACELFITELTLRSWVHTEENKRRTLQKSDIAAAVTQSETFDFLRDIV 150 (236)
T ss_pred hccCcHhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHhccCCCccceeccc
Confidence 4589999999999999999999999999999999999999999999999999998899999999999999999998543
No 36
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=97.09 E-value=0.0014 Score=52.58 Aligned_cols=69 Identities=19% Similarity=0.300 Sum_probs=61.3
Q ss_pred cccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhC
Q psy7425 225 SSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 296 (331)
Q Consensus 225 s~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~n 296 (331)
.+-+| +|..-|.|+.+.+. ..|||.++-.-+..+||.+..+|+.-|...+...+++.|+.+||.+|+..
T Consensus 9 ~~~~g--i~k~~I~RLarr~G-vkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr 77 (85)
T cd00076 9 DNIKG--ITKPAIRRLARRGG-VKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKR 77 (85)
T ss_pred Hhhcc--CCHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 34445 56667999999886 69999999999999999999999999999999999999999999999863
No 37
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=97.05 E-value=0.00024 Score=56.96 Aligned_cols=59 Identities=24% Similarity=0.234 Sum_probs=52.9
Q ss_pred hhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCC
Q psy7425 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTG 169 (331)
Q Consensus 106 li~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~ 169 (331)
-|++.|..||+|.- .--|+..++.+.+.++.|.||-.+..|+...+.||+|-||...|+
T Consensus 13 gi~k~~I~RLarr~-----GvkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV 71 (85)
T cd00076 13 GITKPAIRRLARRG-----GVKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDV 71 (85)
T ss_pred cCCHHHHHHHHHHc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHH
Confidence 49999999998743 567999999999999999999999999999999999999988643
No 38
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=96.97 E-value=0.0011 Score=49.82 Aligned_cols=59 Identities=27% Similarity=0.343 Sum_probs=46.6
Q ss_pred CchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCC
Q psy7425 110 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTG 169 (331)
Q Consensus 110 ~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~ 169 (331)
+|..++ +.|........++..+|+.+++.|+|.|+..|-..++.++.+.+|-||.+.|+
T Consensus 3 lP~a~v-kri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv 61 (65)
T PF00808_consen 3 LPLARV-KRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDV 61 (65)
T ss_dssp S-HHHH-HHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHH
T ss_pred CChHHH-HHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHH
Confidence 454444 34444445667899999999999999999999999999999999999999864
No 39
>KOG0870|consensus
Probab=96.96 E-value=0.00033 Score=62.29 Aligned_cols=70 Identities=23% Similarity=0.254 Sum_probs=64.6
Q ss_pred hhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCch
Q psy7425 103 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPR 174 (331)
Q Consensus 103 t~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~ 174 (331)
.+|++|+.-..|||+|+..+. ++-.+.+|+.|+++||--|+.-|-..++-.|--.+|-||++.|++.|=+
T Consensus 7 ~dl~lP~AiI~rlvke~l~E~--~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~ 76 (172)
T KOG0870|consen 7 EDLNLPNAIITRLVKEVLPES--NVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALD 76 (172)
T ss_pred HHhhccHHHHHHHHHHhCccc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHH
Confidence 378999999999999998877 7899999999999999999999999999999999999999999887644
No 40
>KOG1745|consensus
Probab=96.87 E-value=0.00074 Score=58.51 Aligned_cols=45 Identities=82% Similarity=0.981 Sum_probs=40.2
Q ss_pred CCCCccccccccCCCCCccchhhhhhccc-CCCCCCCCCCCCCCcc
Q psy7425 1 MARTKQTARKSTGGKAPRKQLATKAARKS-APATGGVKKPHPSSSM 45 (331)
Q Consensus 1 MARTKqtarKstggkapRKqla~Kaarks-~p~~ggvKKphRyrpM 45 (331)
|+|+++++++++++++|++.++.+..++. .+..+.++|+|||+|-
T Consensus 1 m~r~~~t~~k~~~~~~~r~~~a~~~~~~~~~~~~~~~~k~~r~rpg 46 (137)
T KOG1745|consen 1 MARTKQTARKSTGGKAPRKQLAGKAARKSAAPRTGRVKKPHRYRPG 46 (137)
T ss_pred CCCCCcccccccCCCCCccccccccccccccccccccCccccccCc
Confidence 89999999999999999999999988876 3446788999999994
No 41
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=96.85 E-value=0.00091 Score=50.97 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=48.0
Q ss_pred hccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCC
Q psy7425 107 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTG 169 (331)
Q Consensus 107 i~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~ 169 (331)
+|+.|..|+.+.+ +--|...+|..+|.+..|.|+-.+.+++..++.|++|-||+..|+
T Consensus 3 ~p~~~i~ria~~~-----Gi~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI 60 (65)
T smart00803 3 LPKETIKDVAESL-----GIGNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDI 60 (65)
T ss_pred CCHHHHHHHHHHC-----CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHH
Confidence 5666666665433 233889999999999999999999999999999999999998754
No 42
>PTZ00015 histone H4; Provisional
Probab=96.83 E-value=0.00054 Score=56.77 Aligned_cols=59 Identities=20% Similarity=0.174 Sum_probs=52.8
Q ss_pred hhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCC
Q psy7425 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTG 169 (331)
Q Consensus 106 li~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~ 169 (331)
-|++.|..||+|.- .--|...++.+.+.++.|.||-.+..|+...+.||+|-||...|+
T Consensus 30 gI~k~~IrRLarr~-----GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV 88 (102)
T PTZ00015 30 GITKGAIRRLARRG-----GVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDV 88 (102)
T ss_pred CCCHHHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHH
Confidence 48999999998743 567999999999999999999999999999999999999988744
No 43
>PLN00035 histone H4; Provisional
Probab=96.80 E-value=0.0006 Score=56.54 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=52.5
Q ss_pred hccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCC
Q psy7425 107 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTG 169 (331)
Q Consensus 107 i~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~ 169 (331)
||+.|..||.|.- .--|...+|.+.|.++.|.||-.+..|+...+.||+|-||...|+
T Consensus 30 ipk~~IrRLARr~-----GvkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV 87 (103)
T PLN00035 30 ITKPAIRRLARRG-----GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDV 87 (103)
T ss_pred CCHHHHHHHHHHc-----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHH
Confidence 8999999998753 467999999999999999999999999999999999999988744
No 44
>smart00417 H4 Histone H4.
Probab=96.64 E-value=0.0032 Score=49.35 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=56.0
Q ss_pred ccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHH
Q psy7425 226 SRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 292 (331)
Q Consensus 226 ~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~ 292 (331)
+-.| +|..-|.|+++.+. .+|||.++-..+..+||.+..+|+..|...+...+++.|+.+||..
T Consensus 10 ~i~g--I~k~~IrRLaRr~G-vkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~ 73 (74)
T smart00417 10 NIQG--ITKPAIRRLARRGG-VKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVY 73 (74)
T ss_pred hhcC--CCHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHhee
Confidence 3445 45667999999875 5899999999999999999999999999999999999999999864
No 45
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=96.29 E-value=0.014 Score=45.20 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=58.3
Q ss_pred chhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCc
Q psy7425 233 PVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 297 (331)
Q Consensus 233 PVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nD 297 (331)
+-..+..++++-.-..|++.+|-..|..++|-++.+|++.|...|+..+++.|.+++|++++..+
T Consensus 3 ~k~~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r~ 67 (72)
T cd07981 3 TKRKLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLERN 67 (72)
T ss_pred cHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 34567778887666689999999999999999999999999999999999999999999998765
No 46
>PTZ00463 histone H2B; Provisional
Probab=96.05 E-value=0.017 Score=48.87 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=48.0
Q ss_pred hHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 236 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 236 ri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
.|++.|++-....-|+..|.-.|...+.=+..-|...|...++.+++..|++++||.||+
T Consensus 33 YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvr 92 (117)
T PTZ00463 33 YIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIR 92 (117)
T ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 599999987666678877776666666666666666677778889999999999999998
No 47
>PLN00158 histone H2B; Provisional
Probab=95.88 E-value=0.019 Score=48.53 Aligned_cols=61 Identities=23% Similarity=0.295 Sum_probs=51.6
Q ss_pred hhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 235 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 235 sri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
..|++.|++-....-|+..|.-.|...+..++.-|...|...++.+++..|++++||.||+
T Consensus 31 ~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvr 91 (116)
T PLN00158 31 IYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVR 91 (116)
T ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHH
Confidence 3599999987766788888877777777777777777788888999999999999999998
No 48
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=95.86 E-value=0.031 Score=44.86 Aligned_cols=63 Identities=25% Similarity=0.425 Sum_probs=54.7
Q ss_pred cchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCC---cccchHHHHHHhh
Q psy7425 232 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK---TRIIPRHLQLAIR 295 (331)
Q Consensus 232 FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k---~rItP~hi~~AI~ 295 (331)
||-..|+|++.. .....++....+.|+++-.-++.||+|.|...-...+. ..|.|.||+.|.+
T Consensus 17 f~k~~iKr~~~~-~~~~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~r 82 (85)
T cd08048 17 FPKAAIKRLIQS-VTGQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYR 82 (85)
T ss_pred ccHHHHHHHHHH-HcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHH
Confidence 777789999975 45689999999999999999999999999888766544 7899999999875
No 49
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=95.55 E-value=0.033 Score=47.16 Aligned_cols=65 Identities=15% Similarity=0.272 Sum_probs=54.3
Q ss_pred hHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHhc
Q psy7425 113 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAARK 184 (331)
Q Consensus 113 ~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~~ 184 (331)
.++|..|..+. +.-+++..++..|-|-++.|...+..|+...+-||+|-||... |+.||.+..-.
T Consensus 4 ~~~v~~iLk~~-Gv~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~e------DV~lAi~~r~~ 68 (117)
T cd07979 4 ARVIAAILKSM-GITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDAD------DVKLAIQSRVD 68 (117)
T ss_pred HHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHH------HHHHHHHHHhc
Confidence 46777776655 4458999999999999999999999999999999999998886 66777665544
No 50
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=95.44 E-value=0.014 Score=45.87 Aligned_cols=60 Identities=22% Similarity=0.164 Sum_probs=49.1
Q ss_pred CchhHHHHHHHhhc--cccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCC
Q psy7425 110 LPFQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTG 169 (331)
Q Consensus 110 ~pF~rlvrei~~~~--~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~ 169 (331)
..++.-|-.|+++- ..++.|+...|.||-|-+=.++..+=.|-..-|-||+|-||.+.|+
T Consensus 5 aal~~~v~ki~ee~~~~~~~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV 66 (76)
T PF15630_consen 5 AALWYTVGKIVEEEAKEKGVEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDV 66 (76)
T ss_dssp HHHHHHHHHHHHHCCCCTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHH
Confidence 34556677777775 4678999999999999999999999999999999999999999854
No 51
>smart00427 H2B Histone H2B.
Probab=95.30 E-value=0.05 Score=44.10 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=51.0
Q ss_pred hHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 236 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 236 ri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
.|++.|++-....-|+..|--.|...+..+..-|..-|...++.+++..|++++||.||+
T Consensus 6 Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvr 65 (89)
T smart00427 6 YIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVR 65 (89)
T ss_pred HHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHH
Confidence 589999987766788888877777777777777777788888989999999999999997
No 52
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=94.65 E-value=0.027 Score=57.15 Aligned_cols=54 Identities=31% Similarity=0.465 Sum_probs=40.6
Q ss_pred HHHHHHhhc-----cccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCC
Q psy7425 115 LVREIAQDF-----KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKST 168 (331)
Q Consensus 115 lvrei~~~~-----~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d 168 (331)
+|+.+++.| ....++..+||.||+.|+|+|.-+|=+|-..-|-||+|-||...|
T Consensus 356 ~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 356 VVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp HHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred HHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 345555544 367899999999999999999999999999999999999998754
No 53
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=94.47 E-value=0.1 Score=44.11 Aligned_cols=61 Identities=18% Similarity=0.129 Sum_probs=54.5
Q ss_pred hHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCc
Q psy7425 236 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 297 (331)
Q Consensus 236 ri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nD 297 (331)
-|+++|++.. ..+++..++..|.-.++-.+.+|+.-|...|...+++.|+.++|.+||..-
T Consensus 6 ~v~~iLk~~G-v~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r 66 (117)
T cd07979 6 VIAAILKSMG-ITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSR 66 (117)
T ss_pred HHHHHHHHCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4788998742 368999999999999999999999999999999999999999999998753
No 54
>KOG3219|consensus
Probab=94.34 E-value=0.055 Score=49.58 Aligned_cols=65 Identities=22% Similarity=0.370 Sum_probs=54.7
Q ss_pred ccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcC-CcccchHHHHHHhhC
Q psy7425 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK-KTRIIPRHLQLAIRN 296 (331)
Q Consensus 231 ~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~-k~rItP~hi~~AI~n 296 (331)
.||=+.|++||..- ..+-|+..+.|+++++-.-|+-||+|.|.......+ ...+.|.||..|++-
T Consensus 112 ~f~Ka~iKkL~~~i-tg~~v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~PLqP~HIREA~rr 177 (195)
T KOG3219|consen 112 AFPKAQIKKLMSSI-TGQSVSENVAIAMAGIAKVFVGEVVEEALDVREEWGESGPLQPKHIREAYRR 177 (195)
T ss_pred cCCHHHHHHHHHHH-hCCccCcceeeeecchhhHhHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH
Confidence 69999999999863 344599999999999999999999999988865544 556999999988763
No 55
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=93.97 E-value=0.18 Score=38.64 Aligned_cols=64 Identities=20% Similarity=0.273 Sum_probs=47.2
Q ss_pred ccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 231 ~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
.||..-|+-+-..-.. .-++..+.-.|+-=+||-+.||++-|.+..+..++.++|+.||+.|++
T Consensus 3 ~~~~esvk~iAes~Gi-~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 3 VFSQESVKDIAESLGI-SNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp ---HHHHHHHHHHTT----B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred cCCHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 4666666665543222 368889999999999999999999999999999999999999999874
No 56
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=93.84 E-value=0.1 Score=42.32 Aligned_cols=63 Identities=21% Similarity=0.348 Sum_probs=46.5
Q ss_pred cchhhHHHhhhcCCcc-cccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcC-CcccchHHHHHHhh
Q psy7425 232 FPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK-KTRIIPRHLQLAIR 295 (331)
Q Consensus 232 FPVsri~R~Lk~~~~~-~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~-k~rItP~hi~~AI~ 295 (331)
||=+-|++++.. ... .-|+....+.++++--.++.||+|.|.......+ ...|.|.||..|.+
T Consensus 24 ~~k~~ikkli~~-~~~~qsv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~r 88 (90)
T PF04719_consen 24 FNKAAIKKLINQ-VLGNQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETGPLQPDHLREAYR 88 (90)
T ss_dssp --HHHHHHHHHH-HHS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS--HHHHHHHHH
T ss_pred CCHHHHHHHHHH-HcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 777789999986 344 7999999999999999999999999988865543 45899999998864
No 57
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=93.32 E-value=0.25 Score=38.43 Aligned_cols=49 Identities=24% Similarity=0.219 Sum_probs=42.8
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHH
Q psy7425 128 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAA 182 (331)
Q Consensus 128 r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~ 182 (331)
+.+.+|++.|.+..|.|+..|-+.+...+.|+.|.+..+. |+.+|-.++
T Consensus 23 ~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~------Dv~~Al~~~ 71 (77)
T smart00576 23 SFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLG------DVVLALENL 71 (77)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHH------HHHHHHHHh
Confidence 7899999999999999999999999999999999987765 556665554
No 58
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=93.15 E-value=0.11 Score=43.95 Aligned_cols=85 Identities=28% Similarity=0.304 Sum_probs=68.3
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHh
Q psy7425 104 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAAR 183 (331)
Q Consensus 104 ~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~ 183 (331)
.|.+|-.++.|+.++= ....|...+|...|-..-|.+.-.++|-+.--+-|.++.+|.|+ +++||.++|.
T Consensus 18 gL~fPV~ri~R~Lk~~----~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~------hi~lAi~nD~ 87 (115)
T cd00074 18 GLQFPVGRIHRYLKKG----RYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPR------HLQLAVRNDE 87 (115)
T ss_pred CccCcHHHHHHHHHcC----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHH------HHHHHHhccH
Confidence 5778888888887641 12368899999999999999999999999999999999999997 7899998876
Q ss_pred ccCCCCCCccccccccccccccccccC
Q psy7425 184 KSAPATGGVKKPLLNKLLSGVTIAQGG 210 (331)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~sg 210 (331)
. |+.+..|+.|..+|
T Consensus 88 E------------L~~L~~~vtI~~gg 102 (115)
T cd00074 88 E------------LNKLLKGVTIASGG 102 (115)
T ss_pred H------------HHHHHcCCcccCCc
Confidence 5 44466666554443
No 59
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=92.18 E-value=0.15 Score=39.04 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=41.2
Q ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCC
Q psy7425 115 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKST 168 (331)
Q Consensus 115 lvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d 168 (331)
-|+.|++.+.- -....++..+|.+-+|.-|-.+++++..++.|+||-+++..|
T Consensus 8 svk~iAes~Gi-~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~D 60 (66)
T PF02969_consen 8 SVKDIAESLGI-SNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDD 60 (66)
T ss_dssp HHHHHHHHTT----B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHH
T ss_pred HHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 46666666542 246889999999999999999999999999999999999874
No 60
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=91.99 E-value=0.24 Score=49.04 Aligned_cols=57 Identities=23% Similarity=0.342 Sum_probs=51.2
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh--CcHHHhhh
Q psy7425 247 AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR--NDEELNKL 303 (331)
Q Consensus 247 ~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~--nDeEL~~L 303 (331)
..+++.+|...|+..+||.+.+|++.|.+.++..++++++++||+.|++ |.|.|.+.
T Consensus 14 i~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~~n~eplyG~ 72 (343)
T cd08050 14 IDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRLRNVEPLYGF 72 (343)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHhCCCcccCC
Confidence 4699999999999999999999999999999999999999999999987 55555443
No 61
>smart00428 H3 Histone H3.
Probab=90.65 E-value=0.52 Score=39.37 Aligned_cols=67 Identities=25% Similarity=0.310 Sum_probs=55.5
Q ss_pred CcccchhhHHHhhhcC--Cc----ccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 229 GLQFPVGRIHRLLRKG--NY----AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 229 gL~FPVsri~R~Lk~~--~~----~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
+|.+|-.-+.|+.++= .+ ..|++.+|-..|--+.|..+.+++|-|...|...++..|.|+|+++|.+
T Consensus 27 ~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~r 99 (105)
T smart00428 27 DLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARR 99 (105)
T ss_pred ccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHH
Confidence 5666666666666651 11 4599999999999999999999999999889999999999999999854
No 62
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=90.41 E-value=0.9 Score=35.31 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=50.4
Q ss_pred HHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhC
Q psy7425 237 IHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 296 (331)
Q Consensus 237 i~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~n 296 (331)
|.++|+... ..+++.+|--.|+.++|-.+.+|.+.+-+.+...+++..++.||.+|+.+
T Consensus 12 Vaqil~~~G-f~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~ 70 (77)
T smart00576 12 VAQILESAG-FDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALEN 70 (77)
T ss_pred HHHHHHHcC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 345565533 37999999999999999999999999999999999999999999999854
No 63
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=89.29 E-value=0.45 Score=36.64 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=38.4
Q ss_pred HHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCC
Q psy7425 118 EIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKST 168 (331)
Q Consensus 118 ei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d 168 (331)
|+..++.+...+..++.+.|.+-|+.|+.+..+.+-..|-|.+--||..+|
T Consensus 7 ~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~D 57 (68)
T PF03847_consen 7 ELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKD 57 (68)
T ss_dssp HHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Confidence 333444778899999999999999999999999999999999999998873
No 64
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=88.54 E-value=1.1 Score=38.75 Aligned_cols=63 Identities=24% Similarity=0.303 Sum_probs=49.0
Q ss_pred hHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHH
Q psy7425 113 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAA 182 (331)
Q Consensus 113 ~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~ 182 (331)
.++|..|..+.. --.|+..++.-|-|=+-.|...+++|+...+-||+|-+|.. .|+.||....
T Consensus 15 a~~i~~iL~~~G-v~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~------~DVrLAi~~r 77 (129)
T PF02291_consen 15 ARVIHLILKSMG-VTEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDA------DDVRLAIQSR 77 (129)
T ss_dssp HHHHHHHHHHTT----B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-H------HHHHHHHHHT
T ss_pred HHHHHHHHHHcC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCh------HHHHHHHHHH
Confidence 467777777664 23579999999999999999999999999999999999885 4888888744
No 65
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=88.01 E-value=2.2 Score=33.18 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=47.4
Q ss_pred chhhHHHhhhcC--CcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcc-cchHHHHHH
Q psy7425 233 PVGRIHRLLRKG--NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR-IIPRHLQLA 293 (331)
Q Consensus 233 PVsri~R~Lk~~--~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~r-ItP~hi~~A 293 (331)
|..-|.|+|+.. ...-||+.+|---++..|+-|+.|.+-.|...+.+.+... |..+||+..
T Consensus 1 p~~li~rll~~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki 64 (72)
T PF09415_consen 1 PPELIARLLHEHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKI 64 (72)
T ss_dssp -CHHHHHHHCTTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 344577788752 2345999999999999999999999999999999999888 999999863
No 66
>KOG1744|consensus
Probab=86.29 E-value=2.7 Score=36.25 Aligned_cols=69 Identities=19% Similarity=0.208 Sum_probs=49.7
Q ss_pred ccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 224 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 224 rs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
....-+..++|-+ .|++-...-=|+..+.-.+.+.+--+...|...|+..|+.+++..|+.++|+.|++
T Consensus 33 ~~~~e~~s~yv~k---vlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~r 101 (127)
T KOG1744|consen 33 TRRKESYSEYVYK---VLKQVHPDLGISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVR 101 (127)
T ss_pred ccccCceeeehhh---hhhcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHH
Confidence 3334455555544 66654333347777777777777666777888889999999999999999999886
No 67
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=84.27 E-value=3.2 Score=32.61 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=36.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhH---HhhcCCcccchHHHHHHhhCcHHH
Q psy7425 253 GAPVYLAAVMEYLAAEVLELAGNA---ARDNKKTRIIPRHLQLAIRNDEEL 300 (331)
Q Consensus 253 ~A~VyLaAvLEYL~aEILelAg~~---A~~~~k~rItP~hi~~AI~nDeEL 300 (331)
-+|-|++++.|-....+-.++..- |+.-|++.|++.|+.+..+.++.|
T Consensus 26 ~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~Rrn~~L 76 (76)
T PF15630_consen 26 VSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLARRNPSL 76 (76)
T ss_dssp E-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTTT-HHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhhcCCCC
Confidence 478999999998888877776332 566799999999999999999876
No 68
>KOG1142|consensus
Probab=83.88 E-value=1.8 Score=41.40 Aligned_cols=71 Identities=14% Similarity=0.182 Sum_probs=59.6
Q ss_pred hhccchhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCC
Q psy7425 98 RYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKA 172 (331)
Q Consensus 98 ~yq~st~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a 172 (331)
.++-+++.++-|--..-||++| ..+-....++-+-|.|-|++|+-++-.-+-..|.|.|-=||.++|+.+.
T Consensus 146 ~~~~~~~~il~k~kl~dLvqqI----d~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLh 216 (258)
T KOG1142|consen 146 QDEPGNNPILSKRKLDDLVQQI----DGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLH 216 (258)
T ss_pred cccCCCCccccccchhHHHHhh----cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeee
Confidence 6777888999998889999888 3445567889999999999999999888888999999888888866544
No 69
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=83.46 E-value=2.4 Score=42.01 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=50.9
Q ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHH
Q psy7425 115 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAA 182 (331)
Q Consensus 115 lvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~ 182 (331)
.|+.|+.... --+...+|..+|.+-.|.++-.+.+++..++.|+||-||+.. |+.+|-+..
T Consensus 4 ~i~~ia~~~G-i~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~------Di~~Al~~~ 64 (343)
T cd08050 4 SIKLIAESLG-IDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTS------DVNHALRLR 64 (343)
T ss_pred HHHHHHHHcC-CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHH------HHHHHHHHh
Confidence 4667766553 237889999999999999999999999999999999999996 667776554
No 70
>KOG0871|consensus
Probab=79.97 E-value=5.4 Score=35.34 Aligned_cols=68 Identities=19% Similarity=0.343 Sum_probs=49.7
Q ss_pred CCcccchhhHHHhhhcCCc-ccccCCChh-HHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhC
Q psy7425 228 AGLQFPVGRIHRLLRKGNY-AERVGAGAP-VYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 296 (331)
Q Consensus 228 agL~FPVsri~R~Lk~~~~-~~Rvs~~A~-VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~n 296 (331)
-.+.+|-.-|..++++.-. .-||...|- +++..++||+ -=|---|...|....++.|.|+|+..|+.|
T Consensus 9 de~sLPkAtv~KmIke~lP~d~rvakeareliincCvEFI-~liSsEAneic~~e~KKTIa~EHV~KALe~ 78 (156)
T KOG0871|consen 9 DELSLPKATVNKMIKEMLPKDVRVAKEARELIINCCVEFI-NLISSEANEICNKEAKKTIAPEHVIKALEN 78 (156)
T ss_pred ccccCcHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHH-HHHHHHHHHHHhHHhcccCCHHHHHHHHHH
Confidence 4678888889999988765 468887665 5556666664 334444555677778899999999999876
No 71
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=76.97 E-value=7.1 Score=29.99 Aligned_cols=62 Identities=15% Similarity=0.314 Sum_probs=47.9
Q ss_pred hHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCc
Q psy7425 236 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 297 (331)
Q Consensus 236 ri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nD 297 (331)
++..++++-.....+...+--.|.-+.+=|+.+|++.|...|+..+...+.+++|++.+..+
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Ler~ 65 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLERN 65 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHhh
Confidence 46667776656678899999999999999999999999999999999999999999887643
No 72
>KOG3467|consensus
Probab=75.65 E-value=6.1 Score=32.07 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=53.5
Q ss_pred ccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 222 KTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 222 ~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
.-+.+-.|++-|. |.|+-+.+. ..||+..----.-.|+.-++.+++..|...+...+++.||..++-.++.
T Consensus 22 ~LsDnIqgitKpa--IRRlARr~G-VkRi~G~~yeE~~~~~k~fl~n~i~~A~~yt~HAKRKTvT~~dvv~~LK 92 (103)
T KOG3467|consen 22 VLRDNIQGITKPA--IRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 92 (103)
T ss_pred HHHhhccccchHH--HHHHHHhcC-cchhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeHHHHHHHHH
Confidence 4455566777776 778887765 3788886655566777777788888888888888999999999887764
No 73
>KOG0869|consensus
Probab=73.18 E-value=10 Score=33.92 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=48.7
Q ss_pred cccchhhHHHhhhcCCc-ccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 230 LQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 230 L~FPVsri~R~Lk~~~~-~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
-.+|+.-|-|+|+..-. ..+|+.+|--.+--++--|++=|---|..-+...+++.|+-.+|-+|+.
T Consensus 31 r~LPIANV~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~ 97 (168)
T KOG0869|consen 31 RFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMS 97 (168)
T ss_pred hhccHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHH
Confidence 36899999999998754 4599998887665544333344444444556677899999999999986
No 74
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=70.06 E-value=2.3 Score=32.76 Aligned_cols=44 Identities=23% Similarity=0.180 Sum_probs=39.1
Q ss_pred cc-cccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCC
Q psy7425 126 DL-RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTG 169 (331)
Q Consensus 126 ~~-r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~ 169 (331)
.| ..+.+||+.|-+.++.||..+-..+...+.|+.|-...+.|+
T Consensus 20 GF~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv 64 (77)
T PF07524_consen 20 GFDSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDV 64 (77)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 44 579999999999999999999999999999999988777643
No 75
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=68.69 E-value=12 Score=30.36 Aligned_cols=36 Identities=17% Similarity=0.413 Sum_probs=24.8
Q ss_pred HHHHHHHHHHH---hhHHhhcCCcccchHHHHHHhhCcHH
Q psy7425 263 EYLAAEVLELA---GNAARDNKKTRIIPRHLQLAIRNDEE 299 (331)
Q Consensus 263 EYL~aEILelA---g~~A~~~~k~rItP~hi~~AI~nDeE 299 (331)
|+++..|.++. ...|. .++.+|+++|+..+|++|+.
T Consensus 31 ~iv~~~i~~l~~~a~~~A~-~r~~k~~~eD~~FliR~D~~ 69 (92)
T cd07978 31 DIVVEYIIELCHKAAEVAQ-RRRGKVKVEDLIFLLRKDPK 69 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHhcCHH
Confidence 34444455554 44444 46778899999999999975
No 76
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=63.92 E-value=11 Score=34.60 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=50.3
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCc
Q psy7425 104 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 161 (331)
Q Consensus 104 ~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakR 161 (331)
..++..-|++..++.|+....-. -+..+.+..|-.|+|.||.+|.+++..|+.|...
T Consensus 42 ~~fl~~~~l~~~~~~i~~~~g~~-~~~~d~~~lis~a~e~rlr~li~k~~~~s~hR~~ 98 (212)
T cd08045 42 PSFLNPSPLAKKIRKIAKKHGLK-EVDEDVLDLISLALEERLRNLLEKLIEVSEHRVD 98 (212)
T ss_pred hhccCHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46788889999999998876543 7899999999999999999999999999999844
No 77
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=63.16 E-value=6.9 Score=31.71 Aligned_cols=62 Identities=11% Similarity=0.091 Sum_probs=32.2
Q ss_pred hHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCch
Q psy7425 113 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPR 174 (331)
Q Consensus 113 ~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~ 174 (331)
+.=|++++..|+..-....+.+..+.+..-.|++.+...+..||.+..+-+|...|.+++=.
T Consensus 4 ~~eI~~mMy~fGD~~~P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR 65 (93)
T PF02269_consen 4 SKEIRQMMYGFGDVEEPLPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLR 65 (93)
T ss_dssp CCCCHHHHHCTTS-SS--HHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHh
Confidence 33345566666666778899999999999999999999999999999888999998887654
No 78
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=61.12 E-value=7.3 Score=26.98 Aligned_cols=34 Identities=32% Similarity=0.431 Sum_probs=26.0
Q ss_pred HhhHHhhcCCcccchHHHHHHhhCcH--HHhhhhcC
Q psy7425 273 AGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLSG 306 (331)
Q Consensus 273 Ag~~A~~~~k~rItP~hi~~AI~nDe--EL~~L~~~ 306 (331)
|-+.|...+...|+|+||-+|+-.|+ ....+|..
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~ 36 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKK 36 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHH
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHH
Confidence 34668888999999999999987766 67777753
No 79
>PLN00160 histone H3; Provisional
Probab=60.62 E-value=18 Score=29.88 Aligned_cols=67 Identities=27% Similarity=0.237 Sum_probs=51.9
Q ss_pred CcccchhhHHHhhhcC-----CcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 229 GLQFPVGRIHRLLRKG-----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 229 gL~FPVsri~R~Lk~~-----~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
+|.+|-.-+.|+.++= ....|+..+|-.-|--+-|..+-.++|-+..-|...++..|.|+|++++.+
T Consensus 19 ~lLI~k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~~r 90 (97)
T PLN00160 19 DLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLARR 90 (97)
T ss_pred hhhhccccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHHHH
Confidence 4556655566666551 123688888999999999999999999887778888999999999999854
No 80
>KOG1658|consensus
Probab=60.43 E-value=7.6 Score=34.64 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=61.0
Q ss_pred cccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhhhhc
Q psy7425 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 305 (331)
Q Consensus 230 L~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~L~~ 305 (331)
+++|..||+.+++..-...-....+.-.++-..|-++.++-.-++..+...+++.+.-+++..||..-+|+.+|-.
T Consensus 58 ~rLpL~rik~vvkl~pdl~l~~dea~~l~a~aaelfi~~Ln~~~~~~~q~~k~kt~qr~d~D~ai~~~de~~fle~ 133 (162)
T KOG1658|consen 58 SRLPLARIKQVVKLDPDLTLLNDEASQLIAKAAELFIQELNDVAYTTAQLRKRKTEQRRDYDTAIEAVDEFAFLEG 133 (162)
T ss_pred hhccHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhhhhcccccccchHHHHHHhh
Confidence 4799999999998754433444445555667888899999998888888888889999999999999999888764
No 81
>KOG0870|consensus
Probab=60.03 E-value=25 Score=31.81 Aligned_cols=67 Identities=18% Similarity=0.265 Sum_probs=49.2
Q ss_pred CCcccchhhHHHhhhcCCcc---cccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 228 AGLQFPVGRIHRLLRKGNYA---ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 228 agL~FPVsri~R~Lk~~~~~---~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
..|-||-+-|-|+.++- +. --|+..|...++-.-=-|+..+...|.+.|++++++.|++.++-.|+.
T Consensus 7 ~dl~lP~AiI~rlvke~-l~E~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~ 76 (172)
T KOG0870|consen 7 EDLNLPNAIITRLVKEV-LPESNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALD 76 (172)
T ss_pred HHhhccHHHHHHHHHHh-CccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHH
Confidence 35778988888777652 22 245556666665555556666777888999999999999999998876
No 82
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=58.95 E-value=12 Score=29.69 Aligned_cols=60 Identities=25% Similarity=0.440 Sum_probs=46.2
Q ss_pred hhhhhhhccchhhhhccCchhHHHHHHHhh-ccccccccHHHHHHHHHH--HHHHHHHhhhhhhhh
Q psy7425 93 LREIRRYQKSTELLIRKLPFQRLVREIAQD-FKTDLRFQSSAVMALQEA--SEAYLVGLFEDTNLC 155 (331)
Q Consensus 93 l~EIr~yq~st~lli~k~pF~rlvrei~~~-~~~~~r~~~~al~aLQea--~E~~lv~lfed~~lc 155 (331)
|.+|..|+...+- ||-.| |.+.|-.+. |+.++-.++..+.+|+.+ +|+||-++++..+.|
T Consensus 2 L~~I~h~l~np~D-iP~ip--ra~aeyLqvrfN~~yl~~sG~i~~lr~~G~SE~~I~Gfl~Gl~~A 64 (77)
T PF10911_consen 2 LKPIQHLLDNPDD-IPDIP--RAAAEYLQVRFNAAYLMASGIISALRKQGWSESYILGFLAGLQYA 64 (77)
T ss_pred cchHHHHhcCCcc-cCCcc--HHHHHHHHHHhcHHHHHHhhhHHHHHHccccHHHHHHHHHHHHHH
Confidence 6788888877643 45444 566666553 677888899999999865 899999999999888
No 83
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=58.56 E-value=34 Score=29.59 Aligned_cols=58 Identities=26% Similarity=0.333 Sum_probs=41.0
Q ss_pred hhHHHhhhcCCcccccCCChhHHHHHHHHHH---HHHHHHHHhhHHhhcCCcccchHHHHHHhhC
Q psy7425 235 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYL---AAEVLELAGNAARDNKKTRIIPRHLQLAIRN 296 (331)
Q Consensus 235 sri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL---~aEILelAg~~A~~~~k~rItP~hi~~AI~n 296 (331)
--|+-+|++.. |...-|-.+.-.|||. +.+||+-|-..|...++..|+..+|++||..
T Consensus 16 ~~i~~iL~~~G----v~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~ 76 (129)
T PF02291_consen 16 RVIHLILKSMG----VTEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQS 76 (129)
T ss_dssp HHHHHHHHHTT-------B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHH
T ss_pred HHHHHHHHHcC----CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHH
Confidence 34778888764 3445555666667765 6778888988898899999999999999983
No 84
>KOG1658|consensus
Probab=57.53 E-value=12 Score=33.42 Aligned_cols=62 Identities=21% Similarity=0.375 Sum_probs=48.2
Q ss_pred hccCchhHHHHHHHhhccccccccH-HHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCC
Q psy7425 107 IRKLPFQRLVREIAQDFKTDLRFQS-SAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGG 170 (331)
Q Consensus 107 i~k~pF~rlvrei~~~~~~~~r~~~-~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~ 170 (331)
+.++|.+|. ++|. ....|++|-. +|+..+-.|+|.|+-.|=.+++-|+--.+|+|+..+|.-
T Consensus 57 l~rLpL~ri-k~vv-kl~pdl~l~~dea~~l~a~aaelfi~~Ln~~~~~~~q~~k~kt~qr~d~D 119 (162)
T KOG1658|consen 57 LSRLPLARI-KQVV-KLDPDLTLLNDEASQLIAKAAELFIQELNDVAYTTAQLRKRKTEQRRDYD 119 (162)
T ss_pred hhhccHHHH-Hhhc-cCCcchhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhhhhccc
Confidence 346676664 3332 2457898854 566678899999999999999999999999999988653
No 85
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=57.39 E-value=37 Score=25.98 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=42.6
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 248 ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 248 ~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
..++.+|---|+-+++..+.+|...+-..|...++...++.|+..|+.
T Consensus 22 ~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~ 69 (77)
T PF07524_consen 22 DSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALE 69 (77)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 578888899999999888899999998999888999999999998874
No 86
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Probab=54.21 E-value=10 Score=36.09 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=38.5
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcee
Q psy7425 104 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163 (331)
Q Consensus 104 ~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvT 163 (331)
++++..-|++..+++|+..+. ...+..+.+..|=-|+|.||-+|+|++...+.|....-
T Consensus 41 ~~fL~~~~L~~~i~~i~~~~g-~~~~~~d~l~llS~A~e~rLr~lie~~~~~s~hR~~~~ 99 (264)
T PF05236_consen 41 EPFLNPSPLQKRIQKIAKKHG-LKSVDEDVLELLSLATEERLRNLIEKAIVLSRHRRDSS 99 (264)
T ss_dssp ---S-HHHHHHHHHHHHHCTT---EE-TCHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred ccccCHHHHHHHHHHHHHHcC-CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 456777889999999987665 55788999999999999999999999999999975543
No 87
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=50.40 E-value=17 Score=29.46 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHH---hhHHhhcCCcccchHHHHHHhhCcHHH
Q psy7425 259 AAVMEYLAAEVLELA---GNAARDNKKTRIIPRHLQLAIRNDEEL 300 (331)
Q Consensus 259 aAvLEYL~aEILelA---g~~A~~~~k~rItP~hi~~AI~nDeEL 300 (331)
..+-|+++.+|.++. ...|...|..+|+++||..++++|+.-
T Consensus 26 ~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~D~~K 70 (93)
T PF02269_consen 26 DLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLRKDPKK 70 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHhcCHHH
Confidence 344555555555554 455666677899999999999999753
No 88
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=49.13 E-value=29 Score=30.13 Aligned_cols=43 Identities=21% Similarity=0.397 Sum_probs=30.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhH-HhhcCCcccchHHHHHHhhCc
Q psy7425 253 GAPVYLAAVMEYLAAEVLELAGNA-ARDNKKTRIIPRHLQLAIRND 297 (331)
Q Consensus 253 ~A~VyLaAvLEYL~aEILelAg~~-A~~~~k~rItP~hi~~AI~nD 297 (331)
.--+|+.+++||+. +|..-.|+ |.+..++.|.++|+-.|+.|=
T Consensus 35 arei~in~cieFi~--~lsseAne~ce~EaKKTIa~EHviKALenL 78 (148)
T COG5150 35 AREIFINACIEFIN--MLSSEANEACEEEAKKTIAYEHVIKALENL 78 (148)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhccccHHHHHHHHHhc
Confidence 45688999999874 33333344 445578899999999998764
No 89
>COG5251 TAF40 Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=49.12 E-value=21 Score=32.47 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=49.9
Q ss_pred cchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhc-CCcccchHHHHHHhhC
Q psy7425 232 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN-KKTRIIPRHLQLAIRN 296 (331)
Q Consensus 232 FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~-~k~rItP~hi~~AI~n 296 (331)
||-..|+.+.- ....+-|+..-.|||.++-.-++.||+|||...-..- -.....|.|+..|++-
T Consensus 116 lnKt~VKKlas-tV~nQtVspNi~I~l~g~~KVfvGEiIElA~~Vq~~w~~sgpl~p~h~reayr~ 180 (199)
T COG5251 116 LNKTQVKKLAS-TVANQTVSPNIRIFLQGVGKVFVGEIIELAMIVQNKWLTSGPLIPFHKREAYRY 180 (199)
T ss_pred CCHHHHHHHHH-HHhccccCCCeeeeeechhHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHH
Confidence 55566777663 3567889999999999999999999999997664332 3346899999999874
No 90
>KOG0871|consensus
Probab=47.74 E-value=11 Score=33.46 Aligned_cols=64 Identities=14% Similarity=0.222 Sum_probs=53.6
Q ss_pred hhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCC
Q psy7425 103 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTG 169 (331)
Q Consensus 103 t~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~ 169 (331)
.++=+||+-.+..|.|| +..|+||..+|-+-|++++-.|+--+=..+|-.+---.+-||.+.-+
T Consensus 9 de~sLPkAtv~KmIke~---lP~d~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV 72 (156)
T KOG0871|consen 9 DELSLPKATVNKMIKEM---LPKDVRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHV 72 (156)
T ss_pred ccccCcHHHHHHHHHHh---CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHH
Confidence 46678999999999998 55699999999999999999998877777887777777778888633
No 91
>KOG3467|consensus
Probab=47.27 E-value=12 Score=30.34 Aligned_cols=39 Identities=18% Similarity=0.126 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCC
Q psy7425 133 AVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGK 171 (331)
Q Consensus 133 al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~ 171 (331)
..+-...++..||-..+.++..-+.||||-||.--|++-
T Consensus 51 ~yeE~~~~~k~fl~n~i~~A~~yt~HAKRKTvT~~dvv~ 89 (103)
T KOG3467|consen 51 IYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVY 89 (103)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeHHHHHH
Confidence 345566788889999999999999999999998865543
No 92
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=46.25 E-value=25 Score=30.08 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=47.5
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHhc
Q psy7425 123 FKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAARK 184 (331)
Q Consensus 123 ~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~~ 184 (331)
-...+|.-+.|...|--.-|...-.++|-+--.|---+--.|||+ -+|||..+|-+
T Consensus 39 ~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~Pr------HlqlAIrnD~E 94 (132)
T COG5262 39 GNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPR------HLQLAIRNDEE 94 (132)
T ss_pred CccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechH------HHHHHhcCcHH
Confidence 346789999999999988888888899988888888888888996 89999988854
No 93
>PF04604 L_biotic_typeA: Type-A lantibiotic; InterPro: IPR007682 Lantibiotics are antibiotic peptides distinguished by the presence of the rare thioether amino acids lanthionine and/or methyllanthionine. They are produced by Gram-positive bacteria as gene-encoded precursor peptides and undergo post-translational modification to generate the mature peptide. Based on their structural and functional features lantibiotics are currently divided into two major groups: the flexible amphiphilic type-A and the rather rigid and globular type-B. Type-A lantibiotics act primarily by pore formation in the bacterial membrane by a mechanism involving the interaction with specific docking molecules such as the membrane precursor lipid II [].; GO: 0019748 secondary metabolic process, 0005576 extracellular region
Probab=44.33 E-value=13 Score=27.30 Aligned_cols=22 Identities=41% Similarity=0.756 Sum_probs=17.6
Q ss_pred CcHHHhhhhcCcEecCCcccCCccc
Q psy7425 296 NDEELNKLLSGVTIAQGGVLPNIQA 320 (331)
Q Consensus 296 nDeEL~~L~~~~tia~gGv~p~i~~ 320 (331)
.|+||+.+++.. ++||++-|-.
T Consensus 16 s~eELd~ilGg~---g~Gv~~Tis~ 37 (51)
T PF04604_consen 16 SDEELDQILGGA---GNGVIKTISH 37 (51)
T ss_pred CHHHHHHHhCCC---CCCceeeccc
Confidence 699999999874 7888886643
No 94
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=43.20 E-value=34 Score=29.70 Aligned_cols=62 Identities=21% Similarity=0.226 Sum_probs=49.3
Q ss_pred hhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecC
Q psy7425 103 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKS 167 (331)
Q Consensus 103 t~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~ 167 (331)
-++-+||+-.|..|-+| +..|+-|+.+|-+-+++++-.|+--|=-.+|..+.--..-||-+.
T Consensus 8 De~sLPKATVqKMvS~i---Lp~dl~ftKearei~in~cieFi~~lsseAne~ce~EaKKTIa~E 69 (148)
T COG5150 8 DENSLPKATVQKMVSSI---LPKDLVFTKEAREIFINACIEFINMLSSEANEACEEEAKKTIAYE 69 (148)
T ss_pred ccccCcHHHHHHHHHHh---ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 45668999999999888 568999999999999999999987776666655555555576654
No 95
>KOG1142|consensus
Probab=43.02 E-value=28 Score=33.52 Aligned_cols=69 Identities=10% Similarity=0.209 Sum_probs=59.6
Q ss_pred ccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHH
Q psy7425 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 299 (331)
Q Consensus 231 ~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeE 299 (331)
.+-..+++.+|++=.-...|..++--+|.-+.|=|+..|...+...|+..+...|-.+||++.+.++--
T Consensus 154 il~k~kl~dLvqqId~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~N 222 (258)
T KOG1142|consen 154 ILSKRKLDDLVQQIDGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNFN 222 (258)
T ss_pred cccccchhHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeecccc
Confidence 345567888888755567888999999999999999999999999999999999999999999988743
No 96
>COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=42.27 E-value=30 Score=29.97 Aligned_cols=57 Identities=28% Similarity=0.321 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHhccCCCCC
Q psy7425 133 AVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAARKSAPATG 190 (331)
Q Consensus 133 al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~~~~~~~~ 190 (331)
...-|-|=|--|-.+++||+...+-|+.|-.+.+ -+++.-..+||++..+.-.|++|
T Consensus 36 VplQLl~FAhRYTq~vl~Dalvya~htgrg~~a~-l~veDvrLA~at~v~~~F~pppP 92 (145)
T COG5094 36 VPLQLLEFAHRYTQDVLEDALVYAKHTGRGHIAT-LGVEDVRLALATKVGRHFVPPPP 92 (145)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCc-ccHHHHHHHHHHHhcCCcCCCCh
Confidence 3344556688899999999999999999988776 33333458999999999888776
No 97
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=38.33 E-value=41 Score=34.32 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=40.8
Q ss_pred CCcCccccccCCcccchhhHHHhhhc----CCcc-cccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHH
Q psy7425 218 KTKSKTRSSRAGLQFPVGRIHRLLRK----GNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 289 (331)
Q Consensus 218 ~~~~~srs~ragL~FPVsri~R~Lk~----~~~~-~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~h 289 (331)
+.+..|+-.-.+-.+|.+-|++++.. +.|+ .+|+..|---|.-++||+...+-+=-.-+|..-|+|.|.+.+
T Consensus 338 k~~k~Skhgi~~P~lP~~~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 338 KQKKVSKHGIPYPSLPPGVVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp --------------S-HHHHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred cccCCCCCCCCCCCCCccHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 34455665556667888888887753 2333 599999999999999999999976666777788999998764
No 98
>KOG0787|consensus
Probab=38.22 E-value=8.9 Score=38.92 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=41.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcc-cchHHHHHHhh-CcHHHhhhhcCcEecCCcccCC
Q psy7425 253 GAPVYLAAVMEYLAAEVLELAGNAARDNKKTR-IIPRHLQLAIR-NDEELNKLLSGVTIAQGGVLPN 317 (331)
Q Consensus 253 ~A~VyLaAvLEYL~aEILelAg~~A~~~~k~r-ItP~hi~~AI~-nDeEL~~L~~~~tia~gGv~p~ 317 (331)
.-.||+=..|+|++.||+..|..+.-...... -.+..|...|. +||+|.-.+.| -+|||.+.
T Consensus 252 ~~~vyvPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISD---rGGGV~~~ 315 (414)
T KOG0787|consen 252 SFTVYVPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISD---RGGGVPHR 315 (414)
T ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEec---CCCCcChh
Confidence 34478999999999999999998876543322 22555665544 67776655555 35666543
No 99
>PF12096 DUF3572: Protein of unknown function (DUF3572); InterPro: IPR021955 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 100 amino acids in length.
Probab=34.82 E-value=82 Score=25.59 Aligned_cols=55 Identities=33% Similarity=0.439 Sum_probs=34.2
Q ss_pred hhHHHhhhcCCcc---cccCCChhHHHHHHHHHHHHH-HHHHHhhHHhhcCCcccchHHHHHHh
Q psy7425 235 GRIHRLLRKGNYA---ERVGAGAPVYLAAVMEYLAAE-VLELAGNAARDNKKTRIIPRHLQLAI 294 (331)
Q Consensus 235 sri~R~Lk~~~~~---~Rvs~~A~VyLaAvLEYL~aE-ILelAg~~A~~~~k~rItP~hi~~AI 294 (331)
.++.|+|-..... -|-..+-|.||++||+||+.+ -.-++...+ ..|.|+++..|-
T Consensus 22 e~l~rFLa~TG~~p~~LR~~a~dp~FL~~VLdFl~~de~~l~af~~a-----~~~~p~~v~~Ar 80 (88)
T PF12096_consen 22 ERLPRFLALTGLSPDDLRAAAGDPAFLAAVLDFLLMDEAWLLAFCDA-----AGIPPEAVAAAR 80 (88)
T ss_pred HHHHHHHHHhCCCHHHHHHHccChHHHHHHHHHHHcchHHHHHHHHH-----cCcChhHHHHHH
Confidence 3556666554332 377778899999999999854 333332222 135677776653
No 100
>KOG0869|consensus
Probab=34.32 E-value=35 Score=30.66 Aligned_cols=71 Identities=23% Similarity=0.340 Sum_probs=47.6
Q ss_pred chhhhhhhhccchhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhh-hhhhhhhhhcCceeeecCCC
Q psy7425 91 VALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLF-EDTNLCAIHAKRQTARKSTG 169 (331)
Q Consensus 91 ~al~EIr~yq~st~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lf-ed~~lca~HakRvTi~~~d~ 169 (331)
..++|--+| ||..-++|=.-.-+..+-.+..+|=+++||.+-.|+-=+= |-+..| ---||-||.-.|+
T Consensus 24 ~~~reqDr~----------LPIANV~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC-~~EkRKTIngdDl 92 (168)
T KOG0869|consen 24 LSLREQDRF----------LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKC-QREKRKTINGDDL 92 (168)
T ss_pred cccchhhhh----------ccHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHH-HHHhcCcccHHHH
Confidence 556666655 4554444322222567778999999999999888765333 444555 5569999999877
Q ss_pred CCC
Q psy7425 170 GKA 172 (331)
Q Consensus 170 ~~a 172 (331)
+.|
T Consensus 93 lwA 95 (168)
T KOG0869|consen 93 LWA 95 (168)
T ss_pred HHH
Confidence 654
No 101
>PLN00158 histone H2B; Provisional
Probab=31.52 E-value=1.6e+02 Score=25.23 Aligned_cols=55 Identities=15% Similarity=0.268 Sum_probs=38.6
Q ss_pred CchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhh----hhhhhhhcCceeeecCC
Q psy7425 110 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFED----TNLCAIHAKRQTARKST 168 (331)
Q Consensus 110 ~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed----~~lca~HakRvTi~~~d 168 (331)
-.|..++..++.+..+|.-+.+.|+..+- .|+.++||. +-..+-.-+|-||..++
T Consensus 27 esy~~YI~kVLKQVhPd~gIS~kaM~Imn----SfvnDiferIA~EAs~La~~nkr~TltsrE 85 (116)
T PLN00158 27 ETYKIYIYKVLKQVHPDTGISSKAMSIMN----SFINDIFEKIATEAGKLARYNKKPTVTSRE 85 (116)
T ss_pred ccHHHHHHHHHHHhCCCCCccHHHHHHHH----HHHHHHHHHHHHHHHHHHhccCCCcCCHHH
Confidence 45667777777777889999999887655 555555554 44444566999999873
No 102
>PTZ00017 histone H2A; Provisional
Probab=31.13 E-value=35 Score=29.77 Aligned_cols=85 Identities=28% Similarity=0.306 Sum_probs=60.9
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHh
Q psy7425 104 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAAR 183 (331)
Q Consensus 104 ~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~ 183 (331)
.|.+|---+.|+.++- ....|..+.|..-|--.-|...-.++|-+---+-..++--|.|+ .++||..+|.
T Consensus 25 gL~FPVgRi~R~Lk~g----~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPr------Hi~lAI~nDe 94 (134)
T PTZ00017 25 GLQFPVGRVHRYLKKG----RYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPR------HIQLAIRNDE 94 (134)
T ss_pred CcccchHHHHHHHhcc----chhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHH------HHHhhccCcH
Confidence 3556666666665542 12347788888888888888888899988777777788888887 7899987775
Q ss_pred ccCCCCCCccccccccccccccccccC
Q psy7425 184 KSAPATGGVKKPLLNKLLSGVTIAQGG 210 (331)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~sg 210 (331)
. |+.+..++.|..+|
T Consensus 95 E------------L~~Ll~~vtIa~GG 109 (134)
T PTZ00017 95 E------------LNKLLAGVTIASGG 109 (134)
T ss_pred H------------HHHHHcCCcccCCc
Confidence 4 45566666665554
No 103
>smart00427 H2B Histone H2B.
Probab=30.60 E-value=1.8e+02 Score=23.69 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=37.6
Q ss_pred chhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhh----hhhhhhhcCceeeecC
Q psy7425 111 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFED----TNLCAIHAKRQTARKS 167 (331)
Q Consensus 111 pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed----~~lca~HakRvTi~~~ 167 (331)
.|..++..+..+..+|.-+++.|+.-+- .|+..+||. +-..+-..+|-||..+
T Consensus 2 sy~~Yi~kvLKqVhpd~giS~kam~imn----SfvnDiferIa~EAs~L~~~nkr~Tltsr 58 (89)
T smart00427 2 TYAIYIYKVLKQVHPDTGISSKAMSIMN----SFVNDIFERIAAEASKLARYNKKSTLSSR 58 (89)
T ss_pred cHHHHHHHHHHHhCCCccccHHHHHHHH----HHHHHHHHHHHHHHHHHHhccCCCcCCHH
Confidence 3566777777777889999999986655 566666654 3444455688899887
No 104
>PF15510 CENP-W: Centromere kinetochore component W
Probab=29.20 E-value=1.4e+02 Score=24.61 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=40.8
Q ss_pred cchhhHHHhhhcCCcccccCCChhHHHH------------HHHHH--HHHHHHHHHhhHHhhcCCcccchHHHHHHh
Q psy7425 232 FPVGRIHRLLRKGNYAERVGAGAPVYLA------------AVMEY--LAAEVLELAGNAARDNKKTRIIPRHLQLAI 294 (331)
Q Consensus 232 FPVsri~R~Lk~~~~~~Rvs~~A~VyLa------------AvLEY--L~aEILelAg~~A~~~~k~rItP~hi~~AI 294 (331)
-|-|.+.|+++......|+..++-+.+. .-|.+ ++..+-|-|-.-|.+++...|.++|+.-|-
T Consensus 17 aPrgfLkrv~Kr~KphlRl~~~~Dllv~~~~f~~~~~~~~vhLncLLFvhrLAEEaRtnA~EnK~~~Ik~~Hv~Aaa 93 (102)
T PF15510_consen 17 APRGFLKRVFKRQKPHLRLETSGDLLVRFCPFSGWQWGGEVHLNCLLFVHRLAEEARTNACENKCGTIKKEHVLAAA 93 (102)
T ss_pred CchHHHHHHHHhcCCceeecccccHHHhhcccccccccceeehhHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 5778899999877777788775544310 11111 224455556555777788889999998664
No 105
>KOG3334|consensus
Probab=26.83 E-value=36 Score=30.11 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=43.0
Q ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHH
Q psy7425 115 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLAT 179 (331)
Q Consensus 115 lvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~ 179 (331)
++-.|..++. --.|....|.-|=|-+=.|.+++++|+..-+-||++-||... |..||.
T Consensus 18 ~i~~iL~s~G-I~eyEprVi~qlLefa~rYtt~vL~DA~vys~HA~ka~i~~e------DVrlA~ 75 (148)
T KOG3334|consen 18 VIASILKSLG-IQEYEPRVINQLLEFAYRYTTTVLDDAKVYSSHAKKATIDAE------DVRLAI 75 (148)
T ss_pred HHHHHHHHcC-ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHH------HHHHHH
Confidence 3444444332 224567788888899999999999999999999998888776 555554
No 106
>PLN00163 histone H4; Provisional
Probab=26.55 E-value=27 Score=26.28 Aligned_cols=27 Identities=33% Similarity=0.634 Sum_probs=17.7
Q ss_pred cccccCCcccchhhHHHhhhcCCcccccCC
Q psy7425 223 TRSSRAGLQFPVGRIHRLLRKGNYAERVGA 252 (331)
Q Consensus 223 srs~ragL~FPVsri~R~Lk~~~~~~Rvs~ 252 (331)
.+.+-.|++=|. |.|+-+.+.. +|||.
T Consensus 23 lrd~i~gItKpa--IrRLARRgGV-KRIs~ 49 (59)
T PLN00163 23 LRDNIQGITKPA--IRRLARRGGV-KRISG 49 (59)
T ss_pred HHHhhcccchHH--HHHHHHhcCc-eeecc
Confidence 344456766666 8888877653 67776
No 107
>smart00414 H2A Histone 2A.
Probab=24.78 E-value=50 Score=27.55 Aligned_cols=85 Identities=32% Similarity=0.327 Sum_probs=57.5
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHh
Q psy7425 104 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAAR 183 (331)
Q Consensus 104 ~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~ 183 (331)
.|.+|---|.|+.++- ....|..+.|..-|--.-|...-.++|-+-.-+-..++-.|.|+ .+++|..+|.
T Consensus 7 gL~fPVgRi~r~Lk~~----~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~------hi~lAi~nD~ 76 (106)
T smart00414 7 GLQFPVGRIHRLLRKG----TYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPR------HLQLAIRNDE 76 (106)
T ss_pred CccCchHHHHHHHHcC----ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchH------HHhhhccCCH
Confidence 4555555566665542 22348888888888888888888899977666666677778886 6888876665
Q ss_pred ccCCCCCCccccccccccccccccccC
Q psy7425 184 KSAPATGGVKKPLLNKLLSGVTIAQGG 210 (331)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~sg 210 (331)
. |+.+..|+.|..+|
T Consensus 77 E------------L~~L~~~vti~~gg 91 (106)
T smart00414 77 E------------LNKLLKGVTIAQGG 91 (106)
T ss_pred H------------HHHHHcCcccCCCc
Confidence 4 44466666554443
No 108
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=24.76 E-value=62 Score=34.02 Aligned_cols=59 Identities=27% Similarity=0.421 Sum_probs=35.6
Q ss_pred ccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhC
Q psy7425 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 296 (331)
Q Consensus 231 ~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~n 296 (331)
.|.-+=|.++|+ |+.|.+.+ .|+..+..| .+||..|...|...+...|+..||+.||..
T Consensus 447 ~~~~~Av~~li~---~~~R~~q~---kLsl~~~~l-~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~ 505 (509)
T PF13654_consen 447 PFDRSAVARLIE---YSARLDQD---KLSLRFSWL-ADLLREANYWARKEGAKVITAEHVEQAIEE 505 (509)
T ss_dssp -BBHHHHHHHHH---HHHHCC-S---EEE--HHHH-HHHHHHHHHHHHHCT-SSB-HHHHHHHHHH
T ss_pred CCCHHHHHHHHH---HHHHHhCC---EeCCCHHHH-HHHHHHHHHHHHHhCCCccCHHHHHHHHHc
Confidence 455555555553 23333333 334444433 678888888899999999999999999974
No 109
>PTZ00463 histone H2B; Provisional
Probab=24.62 E-value=2.3e+02 Score=24.20 Aligned_cols=55 Identities=13% Similarity=0.232 Sum_probs=38.8
Q ss_pred chhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhh----hhhhhhhcCceeeecCCC
Q psy7425 111 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFED----TNLCAIHAKRQTARKSTG 169 (331)
Q Consensus 111 pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed----~~lca~HakRvTi~~~d~ 169 (331)
.|..++..++.+..+|.-+.+.|+..+- .|+.++||. +-..+-..+|-||..+|+
T Consensus 29 sy~~YI~KVLKqVhPd~gIS~kaM~Imn----SfvnDifErIA~EAs~La~~nkr~TltsrEI 87 (117)
T PTZ00463 29 SYGLYIFKVLKQVHPDTGISRKSMNIMN----SFLVDTFEKIATEASRLCKYTRRDTLSSREI 87 (117)
T ss_pred hHHHHHHHHHHhhCCCCCccHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCcCCHHHH
Confidence 3677777777777888999998886654 566666654 333445569999998743
No 110
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=24.15 E-value=90 Score=25.21 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=35.1
Q ss_pred ccCCChhHHHHHHHHHH------HHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 249 RVGAGAPVYLAAVMEYL------AAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 249 Rvs~~A~VyLaAvLEYL------~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
.++..+-.+|-.+++-+ ..-||.+|-..|.-.+...|++.||..|+.
T Consensus 42 ~l~~~~~~~l~~~~~~~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~ 94 (96)
T PF13335_consen 42 PLSSEAKKLLEQAAEKLNLSARGYHRILRVARTIADLEGSERITREHIAEALS 94 (96)
T ss_pred CCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHh
Confidence 44555555555555543 234899999999999999999999999874
No 111
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=23.78 E-value=1.5e+02 Score=23.13 Aligned_cols=55 Identities=11% Similarity=0.194 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhHHhhcC-CcccchHHHHHHhh-----------CcHHHhhhhcCcEecCCcccC
Q psy7425 262 MEYLAAEVLELAGNAARDNK-KTRIIPRHLQLAIR-----------NDEELNKLLSGVTIAQGGVLP 316 (331)
Q Consensus 262 LEYL~aEILelAg~~A~~~~-k~rItP~hi~~AI~-----------nDeEL~~L~~~~tia~gGv~p 316 (331)
||+...++.+.-......++ ...|+...|..++. .++++..+|..+...+.|.+.
T Consensus 3 ~~~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~ 69 (94)
T cd05031 3 LEHAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVN 69 (94)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCc
Confidence 56666666665444444244 57899999998765 346788888766555556553
No 112
>KOG3901|consensus
Probab=22.94 E-value=1.3e+02 Score=25.32 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcH
Q psy7425 261 VMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 298 (331)
Q Consensus 261 vLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nDe 298 (331)
|+||++.= +..|.++. ++.++.-+++..+|+.|+
T Consensus 40 V~~Yi~el-t~~a~~~g---~rgk~~veD~~f~lRkDp 73 (109)
T KOG3901|consen 40 VLEYITEL-THAAMEIG---KRGKVKVEDFKFLLRKDP 73 (109)
T ss_pred HHHHHHHH-HHHHHHhc---ccCceeHHHHHHHHHhCh
No 113
>PLN00153 histone H2A; Provisional
Probab=22.73 E-value=64 Score=28.01 Aligned_cols=85 Identities=27% Similarity=0.246 Sum_probs=58.2
Q ss_pred hhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHhc
Q psy7425 105 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAARK 184 (331)
Q Consensus 105 lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~~ 184 (331)
|.+|---+.|+.++= ....|..+.|..-|--.-|...-.++|-+---+...+..-|+|+ .++||..+|..
T Consensus 23 L~FpVgRi~R~Lr~g----~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPr------Hi~lAI~nDeE 92 (129)
T PLN00153 23 LQFPVGRIARYLKKG----KYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPR------HIQLAIRNDEE 92 (129)
T ss_pred cccchHHHHHHHhcC----chhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChH------HHHhhccCcHH
Confidence 445445555554431 22357788888888888888888899988777777788788886 78999877754
Q ss_pred cCCCCCCccccccccccccccccccCC
Q psy7425 185 SAPATGGVKKPLLNKLLSGVTIAQGGR 211 (331)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~sg~ 211 (331)
|+.+..++.|..+|-
T Consensus 93 ------------L~~Ll~~vTIa~GGV 107 (129)
T PLN00153 93 ------------LGKLLGEVTIASGGV 107 (129)
T ss_pred ------------HHHHHCCCccCCCcc
Confidence 445666666655443
No 114
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=22.11 E-value=94 Score=34.35 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=35.3
Q ss_pred HHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhhhhcC
Q psy7425 266 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG 306 (331)
Q Consensus 266 ~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~L~~~ 306 (331)
+.++|+.|.+.|...+..-|+|+||-+++-.|.++..+|..
T Consensus 6 ~~~~l~~a~~~a~~~~~~~~~~~h~l~~l~~~~~~~~~~~~ 46 (758)
T PRK11034 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEA 46 (758)
T ss_pred HHHHHHHHHHHHHHcCCCcchHHHHHHHHHcChhHHHHHHH
Confidence 45778899999999999999999999999988877777654
No 115
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=21.17 E-value=1.3e+02 Score=25.06 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=33.2
Q ss_pred ChhHHHHHHHHHHHHHH-------HHHHhhHHhhcCCcccchHHHHHHhh--CcHHHhhhhc
Q psy7425 253 GAPVYLAAVMEYLAAEV-------LELAGNAARDNKKTRIIPRHLQLAIR--NDEELNKLLS 305 (331)
Q Consensus 253 ~A~VyLaAvLEYL~aEI-------LelAg~~A~~~~k~rItP~hi~~AI~--nDeEL~~L~~ 305 (331)
.+.+||+++||--=.+. +..+++.+.--.+..++-+||..++. .|++|+.++.
T Consensus 22 ~ia~yL~~~le~~d~a~i~~alg~var~~GMsqvA~~aGlsRe~LYkaLS~~GNPtf~Til~ 83 (100)
T COG3636 22 AIAAYLNAALEEGDPALIAAALGVVARSRGMSQVARKAGLSREGLYKALSPGGNPTFDTILA 83 (100)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCHHHHHHHhCccHHHHHHHhCCCCCCcHHHHHH
Confidence 47889999987433222 22233333222344688999999998 5688887774
No 116
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=20.31 E-value=2e+02 Score=22.67 Aligned_cols=54 Identities=7% Similarity=0.156 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhHHhhcCCc-ccchHHHHHHhhC-----------cHHHhhhhcCcEecCCccc
Q psy7425 262 MEYLAAEVLELAGNAARDNKKT-RIIPRHLQLAIRN-----------DEELNKLLSGVTIAQGGVL 315 (331)
Q Consensus 262 LEYL~aEILelAg~~A~~~~k~-rItP~hi~~AI~n-----------DeEL~~L~~~~tia~gGv~ 315 (331)
||.=+.+|.+.--..+..++.. .|+...|...+.+ +++++.++..+-.-+.|.+
T Consensus 5 le~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~I 70 (93)
T cd05026 5 LEGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEV 70 (93)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCC
Confidence 6777777877776777555665 6999999998843 3578999987655555654
Done!