Query psy7425
Match_columns 331
No_of_seqs 416 out of 1185
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 18:01:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_C Histone H3; histone-fol 100.0 3.3E-54 1.1E-58 368.2 5.1 135 45-185 1-135 (136)
2 2nqb_C Histone H2A; nucleosome 100.0 6.2E-45 2.1E-49 307.2 9.0 123 209-331 1-123 (123)
3 1tzy_A Histone H2A-IV; histone 100.0 2E-44 6.7E-49 306.3 9.0 122 208-329 1-123 (129)
4 2f8n_G Core histone macro-H2A. 100.0 2.2E-44 7.7E-49 302.6 8.6 119 208-328 1-119 (120)
5 2f8n_K Histone H2A type 1; nuc 100.0 8.4E-44 2.9E-48 308.3 9.1 126 205-330 17-143 (149)
6 2yfv_A Histone H3-like centrom 100.0 2.3E-44 7.8E-49 293.1 5.0 95 81-181 2-99 (100)
7 1id3_C Histone H2A.1; nucleoso 100.0 4.1E-43 1.4E-47 298.9 11.9 119 212-330 6-124 (131)
8 3r45_A Histone H3-like centrom 100.0 5.1E-43 1.7E-47 303.3 5.2 112 66-185 38-152 (156)
9 3nqu_A Histone H3-like centrom 100.0 9.6E-43 3.3E-47 297.9 5.9 111 68-186 24-137 (140)
10 1f66_C Histone H2A.Z; nucleoso 100.0 4.7E-42 1.6E-46 291.3 8.8 115 215-330 11-126 (128)
11 2jss_A Chimera of histone H2B. 100.0 2.2E-37 7.5E-42 279.2 11.8 185 109-318 2-192 (192)
12 2l5a_A Histone H3-like centrom 100.0 3.2E-34 1.1E-38 262.9 9.9 183 103-296 8-225 (235)
13 2hue_B Histone H3; mini beta s 100.0 1.6E-32 5.4E-37 213.6 5.6 75 104-184 1-75 (77)
14 3nqj_A Histone H3-like centrom 100.0 4.7E-32 1.6E-36 213.2 4.9 76 105-186 2-79 (82)
15 2ly8_A Budding yeast chaperone 100.0 2.2E-28 7.6E-33 204.9 12.3 107 106-295 1-110 (121)
16 3ksy_A SOS-1, SON of sevenless 99.9 3.8E-23 1.3E-27 225.1 6.2 173 109-321 20-192 (1049)
17 1jfi_A Transcription regulator 99.8 1.3E-20 4.4E-25 152.9 6.5 82 223-304 3-84 (98)
18 1f1e_A Histone fold protein; a 99.7 3.9E-17 1.3E-21 142.2 6.5 143 107-297 5-147 (154)
19 1n1j_B NF-YC; histone-like PAI 99.6 2.6E-16 9E-21 127.2 8.3 78 227-304 15-92 (97)
20 1b67_A Protein (histone HMFA); 99.6 1.1E-16 3.8E-21 121.0 4.3 62 107-179 3-64 (68)
21 4g92_C HAPE; transcription fac 99.6 4.9E-16 1.7E-20 130.1 7.8 75 230-304 40-114 (119)
22 2byk_A Chrac-16; nucleosome sl 99.5 1E-14 3.4E-19 125.3 5.7 85 220-304 8-93 (140)
23 2yfw_B Histone H4, H4; cell cy 99.5 4.4E-14 1.5E-18 115.3 7.0 88 208-298 1-95 (103)
24 1tzy_D Histone H4-VI; histone- 99.5 7.9E-14 2.7E-18 113.8 7.4 78 218-298 18-95 (103)
25 1ku5_A HPHA, archaeal histon; 99.4 3.6E-13 1.2E-17 102.4 4.1 63 106-179 6-68 (70)
26 1n1j_A NF-YB; histone-like PAI 99.2 1.1E-12 3.9E-17 104.8 0.4 66 101-169 3-68 (93)
27 1tzy_C Histone H3; histone-fol 99.1 1.3E-11 4.4E-16 105.3 -0.0 46 1-46 1-46 (136)
28 1b67_A Protein (histone HMFA); 98.6 7.9E-08 2.7E-12 72.1 6.3 65 231-296 2-66 (68)
29 1ku5_A HPHA, archaeal histon; 98.4 3E-07 1E-11 69.5 6.3 65 231-296 6-70 (70)
30 2r10_A Chromatin structure-rem 98.3 1.2E-07 4.2E-12 92.4 0.6 50 47-96 3-52 (361)
31 1id3_B Histone H4; nucleosome 98.2 3.7E-06 1.3E-10 68.3 7.6 82 213-297 12-93 (102)
32 2r10_A Chromatin structure-rem 98.2 3E-07 1E-11 89.6 0.7 43 3-45 3-45 (361)
33 1n1j_A NF-YB; histone-like PAI 98.2 3.7E-06 1.3E-10 66.8 6.7 68 228-295 5-73 (93)
34 3b0c_W CENP-W, centromere prot 98.0 1.1E-05 3.6E-10 62.0 6.7 65 231-295 4-68 (76)
35 2byk_B Chrac-14; nucleosome sl 98.0 6.9E-06 2.4E-10 69.3 5.2 75 229-303 7-82 (128)
36 1id3_B Histone H4; nucleosome 97.6 8.7E-06 3E-10 66.1 0.4 61 104-169 26-86 (102)
37 1tzy_D Histone H4-VI; histone- 97.6 4.4E-05 1.5E-09 61.9 4.4 67 104-181 27-93 (103)
38 2hue_C Histone H4; mini beta s 97.6 0.00015 5E-09 56.7 7.2 71 224-297 5-75 (84)
39 2yfw_B Histone H4, H4; cell cy 97.6 4.3E-05 1.5E-09 62.0 3.9 67 105-182 28-94 (103)
40 1f1e_A Histone fold protein; a 97.5 0.00012 4.2E-09 63.5 6.4 64 231-294 4-67 (154)
41 2hue_C Histone H4; mini beta s 97.5 1.4E-05 4.8E-10 62.5 0.1 62 103-169 7-68 (84)
42 2byk_B Chrac-14; nucleosome sl 97.2 9.8E-05 3.4E-09 62.2 1.9 66 103-171 6-71 (128)
43 1jfi_B DR1 protein, transcript 97.2 0.0005 1.7E-08 61.0 6.4 77 227-304 11-87 (179)
44 1taf_B TFIID TBP associated fa 97.2 0.00078 2.7E-08 51.1 6.6 65 230-295 5-69 (70)
45 2x4w_B Histone H3.2; transcrip 97.2 0.00011 3.8E-09 44.8 1.5 24 69-92 3-26 (26)
46 3b0c_T CENP-T, centromere prot 97.2 0.00016 5.5E-09 59.4 3.0 59 104-167 5-63 (111)
47 3b0c_W CENP-W, centromere prot 97.1 0.00011 3.7E-09 56.3 0.8 63 106-172 4-66 (76)
48 3r45_A Histone H3-like centrom 97.0 0.00056 1.9E-08 59.3 4.7 104 178-296 38-148 (156)
49 1jfi_B DR1 protein, transcript 97.0 0.00013 4.3E-09 64.8 0.6 69 100-172 9-77 (179)
50 3b0c_T CENP-T, centromere prot 96.9 0.00082 2.8E-08 55.2 4.2 70 230-300 6-75 (111)
51 1tzy_B Histone H2B; histone-fo 96.9 0.001 3.6E-08 55.7 4.8 64 231-295 37-100 (126)
52 2nqb_D Histone H2B; nucleosome 96.7 0.0021 7E-08 53.7 5.3 61 235-295 37-97 (123)
53 1taf_A TFIID TBP associated fa 96.6 0.0035 1.2E-07 47.2 5.9 61 114-181 5-65 (68)
54 3v9r_A MHF1, uncharacterized p 96.6 0.0012 3.9E-08 52.5 3.4 61 109-169 11-73 (90)
55 3nqu_A Histone H3-like centrom 96.5 0.0029 9.8E-08 54.0 5.2 101 180-295 24-131 (140)
56 4dra_A Centromere protein S; D 96.5 0.002 6.7E-08 53.2 3.9 55 113-169 34-88 (113)
57 3avr_B Histone H3; cupin super 96.4 0.0013 4.3E-08 40.2 1.6 25 18-42 1-25 (26)
58 2x4w_B Histone H3.2; transcrip 96.3 0.0013 4.4E-08 40.0 1.5 21 24-44 2-22 (26)
59 3v9r_A MHF1, uncharacterized p 96.3 0.006 2.1E-07 48.3 5.6 78 227-306 11-89 (90)
60 1n1j_B NF-YC; histone-like PAI 96.3 0.0061 2.1E-07 48.6 5.8 81 93-181 4-84 (97)
61 3b0b_B CENP-S, centromere prot 96.3 0.0017 6E-08 53.0 2.5 60 110-169 19-80 (107)
62 1taf_A TFIID TBP associated fa 96.3 0.012 3.9E-07 44.4 6.8 60 236-296 6-65 (68)
63 3vh5_A CENP-S; histone fold, c 96.3 0.0018 6.1E-08 55.2 2.5 60 110-169 19-80 (140)
64 4g92_C HAPE; transcription fac 96.2 0.0071 2.4E-07 50.0 5.8 69 104-179 36-104 (119)
65 1taf_B TFIID TBP associated fa 95.7 0.0043 1.5E-07 47.0 2.2 57 107-168 7-63 (70)
66 4dra_A Centromere protein S; D 95.6 0.0053 1.8E-07 50.6 2.5 79 227-306 26-104 (113)
67 2jss_A Chimera of histone H2B. 95.3 0.022 7.4E-07 50.8 5.7 61 235-295 7-67 (192)
68 3b0b_B CENP-S, centromere prot 95.2 0.015 5.2E-07 47.4 3.9 78 227-305 18-95 (107)
69 3nqj_A Histone H3-like centrom 94.7 0.049 1.7E-06 42.4 5.5 65 231-295 3-73 (82)
70 2hue_B Histone H3; mini beta s 94.6 0.061 2.1E-06 41.3 5.8 66 230-295 2-71 (77)
71 2nqb_C Histone H2A; nucleosome 94.5 0.036 1.2E-06 46.2 4.6 84 104-209 21-104 (123)
72 1bh9_B TAFII28; histone fold, 94.3 0.07 2.4E-06 42.0 5.6 64 231-295 16-80 (89)
73 2f8n_G Core histone macro-H2A. 94.3 0.047 1.6E-06 45.3 4.7 86 103-210 19-104 (120)
74 3vh5_A CENP-S; histone fold, c 94.3 0.036 1.2E-06 47.2 4.0 79 227-306 18-96 (140)
75 1tzy_A Histone H2A-IV; histone 94.2 0.045 1.6E-06 45.9 4.5 71 104-184 23-93 (129)
76 2f8n_K Histone H2A type 1; nuc 94.1 0.043 1.5E-06 47.2 4.4 72 103-184 41-112 (149)
77 1jfi_A Transcription regulator 94.0 0.023 7.8E-07 45.4 2.1 60 109-169 11-70 (98)
78 2yfv_A Histone H3-like centrom 93.8 0.071 2.4E-06 42.9 4.7 68 228-295 24-98 (100)
79 2byk_A Chrac-16; nucleosome sl 92.1 0.064 2.2E-06 45.6 2.3 64 109-179 19-83 (140)
80 1id3_C Histone H2A.1; nucleoso 91.7 0.21 7.2E-06 42.0 5.0 71 104-184 23-93 (131)
81 4dra_E Centromere protein X; D 91.3 0.57 1.9E-05 36.5 6.7 66 228-293 9-76 (84)
82 3a1b_A DNA (cytosine-5)-methyl 90.9 0.038 1.3E-06 48.0 -0.3 21 2-22 1-21 (159)
83 3b0b_C CENP-X, centromere prot 90.9 0.43 1.5E-05 36.9 5.7 65 229-293 6-72 (81)
84 2nqb_D Histone H2B; nucleosome 90.8 0.57 2E-05 39.0 6.6 65 110-180 33-97 (123)
85 2ly8_A Budding yeast chaperone 90.6 0.036 1.2E-06 46.1 -0.7 43 126-168 62-104 (121)
86 1h3o_B Transcription initiatio 90.6 0.18 6.1E-06 38.7 3.2 63 106-178 5-67 (76)
87 1tzy_B Histone H2B; histone-fo 90.4 0.61 2.1E-05 38.9 6.6 65 110-180 36-100 (126)
88 3avr_B Histone H3; cupin super 89.7 0.12 4.2E-06 31.1 1.3 25 62-86 1-25 (26)
89 1f66_C Histone H2A.Z; nucleoso 88.8 0.68 2.3E-05 38.7 5.7 72 104-184 25-96 (128)
90 2l5a_A Histone H3-like centrom 84.0 0.25 8.6E-06 45.3 0.6 45 125-169 175-219 (235)
91 3a1b_A DNA (cytosine-5)-methyl 83.7 0.25 8.5E-06 42.9 0.4 20 46-65 1-20 (159)
92 1k6k_A ATP-dependent CLP prote 77.1 2.1 7.2E-05 34.6 3.9 40 266-305 6-45 (143)
93 1khy_A CLPB protein; alpha hel 69.2 4.3 0.00015 32.9 4.0 33 266-298 10-42 (148)
94 1h3o_B Transcription initiatio 68.8 13 0.00043 28.3 6.2 67 231-297 5-71 (76)
95 2y1q_A CLPC N-domain, negative 67.4 3.5 0.00012 33.6 3.0 40 266-305 10-51 (150)
96 3fes_A ATP-dependent CLP endop 67.2 3.2 0.00011 34.1 2.8 40 266-305 12-53 (145)
97 3fh2_A Probable ATP-dependent 65.4 3.8 0.00013 33.6 2.9 40 266-305 11-52 (146)
98 2k3y_A Chromatin modification- 60.2 3.7 0.00013 34.6 1.9 26 62-87 110-136 (136)
99 3fes_A ATP-dependent CLP endop 59.6 6.2 0.00021 32.3 3.2 39 267-305 87-127 (145)
100 3zri_A CLPB protein, CLPV; cha 58.6 6.9 0.00024 33.6 3.4 50 256-305 16-70 (171)
101 3fh2_A Probable ATP-dependent 58.5 8.1 0.00028 31.6 3.7 39 267-305 87-127 (146)
102 1k6k_A ATP-dependent CLP prote 50.7 13 0.00046 29.7 3.8 39 267-305 85-125 (143)
103 1khy_A CLPB protein; alpha hel 49.7 18 0.00062 29.0 4.4 40 266-305 87-127 (148)
104 3zri_A CLPB protein, CLPV; cha 47.4 17 0.00057 31.1 4.0 32 267-298 104-136 (171)
105 1wwi_A Hypothetical protein TT 47.2 28 0.00097 29.6 5.3 60 231-291 2-61 (148)
106 2y1q_A CLPC N-domain, negative 43.5 15 0.0005 29.7 2.9 33 266-298 84-116 (150)
107 1r6b_X CLPA protein; AAA+, N-t 36.0 28 0.00095 35.9 4.2 40 266-305 6-45 (758)
108 2k3y_A Chromatin modification- 28.5 21 0.00072 30.0 1.5 23 174-196 110-133 (136)
109 1r4v_A Hypothetical protein AQ 25.2 37 0.0013 29.5 2.5 60 231-291 26-85 (171)
110 3pxg_A Negative regulator of g 23.9 41 0.0014 32.7 2.9 39 266-304 10-50 (468)
111 3fwb_A Cell division control p 23.7 2.4E+02 0.0083 21.4 7.0 49 268-316 96-150 (161)
112 3n22_A Protein S100-A2; EF-han 23.0 80 0.0027 23.9 3.9 54 262-315 6-71 (98)
113 2vxz_A Pyrsv_GP04; viral prote 22.6 1.2E+02 0.0041 26.1 5.1 42 265-306 75-116 (165)
114 3pxg_A Negative regulator of g 22.2 50 0.0017 32.2 3.1 33 267-299 85-117 (468)
115 1f6v_A DNA transposition prote 21.3 30 0.001 27.1 1.0 30 265-295 48-77 (91)
No 1
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=100.00 E-value=3.3e-54 Score=368.18 Aligned_cols=135 Identities=90% Similarity=1.185 Sum_probs=91.0
Q ss_pred ccccccccccccCCCCCcchhhhhhhhcCCCCCCCCCCCCccCCCcchhhhhhhhccchhhhhccCchhHHHHHHHhhcc
Q psy7425 45 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 124 (331)
Q Consensus 45 MARtKqtarkstg~kaprk~~a~k~~~k~~p~~~~~~~~~r~~pg~~al~EIr~yq~st~lli~k~pF~rlvrei~~~~~ 124 (331)
||||||+|++++||++|++++++++++++.|.+++++++|||+||+++|+|||+||+||+|||||+||+||||||+++|.
T Consensus 1 MARtk~tarkstggkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~ 80 (136)
T 1tzy_C 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_dssp -----------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHC
T ss_pred CCCCccccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHhcc
Q psy7425 125 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAARKS 185 (331)
Q Consensus 125 ~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~~~ 185 (331)
+++|||++||+|||||+|+|||+||||+|+||+||+|||||++ |||||.++....
T Consensus 81 ~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~k------DiqLa~rirg~~ 135 (136)
T 1tzy_C 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK------DIQLARRIRGER 135 (136)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH------HHHHHHHHHTCC
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHH------hHHHHHHHhCcC
Confidence 9999999999999999999999999999999999999999997 999999886543
No 2
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=100.00 E-value=6.2e-45 Score=307.18 Aligned_cols=123 Identities=95% Similarity=1.337 Sum_probs=105.4
Q ss_pred cCCCCCCCCCCcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchH
Q psy7425 209 GGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 288 (331)
Q Consensus 209 sg~gk~~k~~~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~ 288 (331)
||+|++++.+++..|+|+||||||||+||+|||++++|++||+++|||||+||||||++||||+|+|+|+++++++|+|+
T Consensus 1 ~~~~~~~~~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~ 80 (123)
T 2nqb_C 1 SGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 80 (123)
T ss_dssp ------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH
T ss_pred CCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHH
Confidence 46778888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCcHHHhhhhcCcEecCCcccCCcccccCCcccccCC
Q psy7425 289 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKKA 331 (331)
Q Consensus 289 hi~~AI~nDeEL~~L~~~~tia~gGv~p~i~~~l~~~~~~~~~ 331 (331)
||++||+||+|||+||+++||++|||+||||++|++|++++++
T Consensus 81 hi~lAI~nDeEL~~Ll~~vtia~ggvlp~i~~~l~~k~~~~~~ 123 (123)
T 2nqb_C 81 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKKA 123 (123)
T ss_dssp HHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSSCC-----
T ss_pred HHHHHHhccHHHHHHhcCceeCCCCcCCCccHHHcCcccccCC
Confidence 9999999999999999999999999999999999999988764
No 3
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=100.00 E-value=2e-44 Score=306.32 Aligned_cols=122 Identities=89% Similarity=1.294 Sum_probs=105.2
Q ss_pred ccCCCC-CCCCCCcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccc
Q psy7425 208 QGGRGK-GGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII 286 (331)
Q Consensus 208 ~sg~gk-~~k~~~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rIt 286 (331)
|||+|+ +++.+++..|+|+||||||||+||+|||++++|++||+++|||||+||||||++||||+|+|+|+++++++|+
T Consensus 1 m~~~~~~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krIt 80 (129)
T 1tzy_A 1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII 80 (129)
T ss_dssp -------------CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCCCCCCCCCCCCCCCccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEc
Confidence 677776 6677778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhCcHHHhhhhcCcEecCCcccCCcccccCCccccc
Q psy7425 287 PRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 329 (331)
Q Consensus 287 P~hi~~AI~nDeEL~~L~~~~tia~gGv~p~i~~~l~~~~~~~ 329 (331)
|+||++||+||+|||+||+++||++|||+||||++|+++++++
T Consensus 81 p~hi~lAI~nDeEL~~L~~~vtIa~ggvlP~i~~~l~~k~~~~ 123 (129)
T 1tzy_A 81 PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDS 123 (129)
T ss_dssp HHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCC----
T ss_pred HHHHHHHHhccHHHHHHhCCCeecCCCcCCCCCHHHcCccccc
Confidence 9999999999999999999999999999999999999999865
No 4
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=100.00 E-value=2.2e-44 Score=302.60 Aligned_cols=119 Identities=62% Similarity=0.973 Sum_probs=106.7
Q ss_pred ccCCCCCCCCCCcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccch
Q psy7425 208 QGGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIP 287 (331)
Q Consensus 208 ~sg~gk~~k~~~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP 287 (331)
|||+| |+.+++.+|+|+||||||||+||+|||++++|++||+++|||||+||||||++||||+|+|+|+++++++|+|
T Consensus 1 m~~~~--~~~~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp 78 (120)
T 2f8n_G 1 MSSRG--GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTP 78 (120)
T ss_dssp -----------CCCCCHHHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred CCCCC--CCCCcCCcCcccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcH
Confidence 67765 6667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCcHHHhhhhcCcEecCCcccCCcccccCCcccc
Q psy7425 288 RHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 328 (331)
Q Consensus 288 ~hi~~AI~nDeEL~~L~~~~tia~gGv~p~i~~~l~~~~~~ 328 (331)
+||++||+||+|||+||+++||++|||+||||++|++|+++
T Consensus 79 ~hi~lAI~nDeEL~~Ll~~vtia~ggv~p~i~~~l~~k~~~ 119 (120)
T 2f8n_G 79 RHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRG 119 (120)
T ss_dssp HHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCCC--
T ss_pred HHHHHHHhcCHHHHHHhCCceECCCCcCCCcCHHHcCCccC
Confidence 99999999999999999999999999999999999999864
No 5
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=100.00 E-value=8.4e-44 Score=308.30 Aligned_cols=126 Identities=86% Similarity=1.227 Sum_probs=104.4
Q ss_pred cccccCCCCC-CCCCCcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCc
Q psy7425 205 TIAQGGRGKG-GKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKT 283 (331)
Q Consensus 205 ~~~~sg~gk~-~k~~~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~ 283 (331)
...|+|+|++ ++.+++.+|+|+||||||||+||+|||++++|++||+++|||||+||||||++||||+|+|+|++++++
T Consensus 17 ~~~~~~~~~~~~~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krk 96 (149)
T 2f8n_K 17 RGSMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKT 96 (149)
T ss_dssp -----------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred ccccccCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3568888775 677778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhhCcHHHhhhhcCcEecCCcccCCcccccCCcccccC
Q psy7425 284 RIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 330 (331)
Q Consensus 284 rItP~hi~~AI~nDeEL~~L~~~~tia~gGv~p~i~~~l~~~~~~~~ 330 (331)
+|+|+||++||+||+|||+||+++||++|||+|+||++|++|+++++
T Consensus 97 rItprhI~lAI~nDeEL~~Ll~~vtIa~gGVlP~i~~~l~~k~~~~~ 143 (149)
T 2f8n_K 97 RIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESH 143 (149)
T ss_dssp EECHHHHHHHHHHSHHHHHHTTTEEETTCCCCCCCCGGGSCC-----
T ss_pred cCcHHHHHHHHhccHHHHHHhcCceEcCCCCCCCccHHHcCcccccc
Confidence 99999999999999999999999999999999999999999998654
No 6
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=100.00 E-value=2.3e-44 Score=293.14 Aligned_cols=95 Identities=58% Similarity=0.880 Sum_probs=64.9
Q ss_pred CCCCccCCCcchhhhhhhhccchhhhhccCchhHHHHHHHhhccc---cccccHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q psy7425 81 KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAI 157 (331)
Q Consensus 81 ~~~~r~~pg~~al~EIr~yq~st~lli~k~pF~rlvrei~~~~~~---~~r~~~~al~aLQea~E~~lv~lfed~~lca~ 157 (331)
+++|||+||++||+|||+||+||+|||||+||+||||||+++|.+ ++|||++||+|||||+|+|||+||||+|+||+
T Consensus 2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~ 81 (100)
T 2yfv_A 2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLAL 81 (100)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999987 99999999999999999999999999999999
Q ss_pred hcCceeeecCCCCCCchHHHHHHH
Q psy7425 158 HAKRQTARKSTGGKAPRKQLATKA 181 (331)
Q Consensus 158 HakRvTi~~~d~~~a~~~~~~~~~ 181 (331)
||||||||++ |||||.++
T Consensus 82 HAkRvTi~~k------DiqLa~ri 99 (100)
T 2yfv_A 82 HAKRITIMRK------DMQLARRI 99 (100)
T ss_dssp HTTCSEECHH------HHHHHHHC
T ss_pred HcCCccCCHH------HHHHHHHh
Confidence 9999999997 89999764
No 7
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=4.1e-43 Score=298.91 Aligned_cols=119 Identities=77% Similarity=1.193 Sum_probs=106.9
Q ss_pred CCCCCCCCcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHH
Q psy7425 212 GKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQ 291 (331)
Q Consensus 212 gk~~k~~~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~ 291 (331)
|++++.+++..|+|+||||||||+||+|||++++|++||+++|||||+||||||++||||+|+|+|+++++++|+|+||+
T Consensus 6 ~~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~ 85 (131)
T 1id3_C 6 GKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQ 85 (131)
T ss_dssp ----------CCTTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred CCCCCCCCCCCCccccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHH
Confidence 44566677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCcHHHhhhhcCcEecCCcccCCcccccCCcccccC
Q psy7425 292 LAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 330 (331)
Q Consensus 292 ~AI~nDeEL~~L~~~~tia~gGv~p~i~~~l~~~~~~~~ 330 (331)
+||+||+|||+||+++||++|||+||||++|++|+++++
T Consensus 86 lAI~nDeEL~~Ll~~vtIa~ggvlP~i~~~l~~k~~~~~ 124 (131)
T 1id3_C 86 LAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKA 124 (131)
T ss_dssp HHHHTCHHHHHHTTTEEETTCCCCCCCCGGGSCCSCCSC
T ss_pred HHHhccHHHHHHhcCceecCCccCCCccHHHcCcccccc
Confidence 999999999999999999999999999999999998754
No 8
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.1e-43 Score=303.26 Aligned_cols=112 Identities=46% Similarity=0.661 Sum_probs=72.5
Q ss_pred hhhhhhcCCCCCCCCCCC-CccCCCcchhhhhhhhccchhhhhccCchhHHHHHHHhhcc--ccccccHHHHHHHHHHHH
Q psy7425 66 ATKAARKSAPATGGVKKP-HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASE 142 (331)
Q Consensus 66 a~k~~~k~~p~~~~~~~~-~r~~pg~~al~EIr~yq~st~lli~k~pF~rlvrei~~~~~--~~~r~~~~al~aLQea~E 142 (331)
+++++++++|.+|+++++ +||+||+ |+|||+||+||+|||+|+||+||||||+++|. .++|||++||+|||||+|
T Consensus 38 ~~~aa~ksap~~g~~~~~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaE 115 (156)
T 3r45_A 38 PTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAE 115 (156)
T ss_dssp ---------------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHH
Confidence 456778899999988766 7999998 99999999999999999999999999999997 689999999999999999
Q ss_pred HHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHhcc
Q psy7425 143 AYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAARKS 185 (331)
Q Consensus 143 ~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~~~ 185 (331)
+|||+||||+|+||+||||||||++ |||||.++...+
T Consensus 116 ayLV~LFEdanLcAiHAkRVTIm~k------DIqLArrIrg~~ 152 (156)
T 3r45_A 116 AFLVHLFEDAYLLTLHAGRVTLFPK------DVQLARRIRGLE 152 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEECHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHH------HHHHHHHHcccc
Confidence 9999999999999999999999997 899999887554
No 9
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=100.00 E-value=9.6e-43 Score=297.88 Aligned_cols=111 Identities=47% Similarity=0.677 Sum_probs=71.6
Q ss_pred hhhhcCCCCCCCCCCCC-ccCCCcchhhhhhhhccchhhhhccCchhHHHHHHHhhcc--ccccccHHHHHHHHHHHHHH
Q psy7425 68 KAARKSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAY 144 (331)
Q Consensus 68 k~~~k~~p~~~~~~~~~-r~~pg~~al~EIr~yq~st~lli~k~pF~rlvrei~~~~~--~~~r~~~~al~aLQea~E~~ 144 (331)
+++++++|.+|++++++ ||+||+ |+|||+||+||+|||+|+||+||||||+++|. .++|||++||+|||||+|+|
T Consensus 24 ~aa~~~~~~~g~~~~~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEay 101 (140)
T 3nqu_A 24 PGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAF 101 (140)
T ss_dssp -------------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHH
Confidence 45678888888887655 899998 99999999999999999999999999999997 68999999999999999999
Q ss_pred HHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHhccC
Q psy7425 145 LVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAARKSA 186 (331)
Q Consensus 145 lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~~~~ 186 (331)
||+||||+|+||+||||||||++ |||||.++...+.
T Consensus 102 Lv~LFEdanlcAiHAkRVTIm~k------DiqLArrirg~~~ 137 (140)
T 3nqu_A 102 LVHLFEDAYLLTLHAGRVTLFPK------DVQLARRIRGLEE 137 (140)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHH------HHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHcCcccccHH------HHHHHHHhccccc
Confidence 99999999999999999999997 8999998876543
No 10
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=100.00 E-value=4.7e-42 Score=291.34 Aligned_cols=115 Identities=64% Similarity=0.941 Sum_probs=99.6
Q ss_pred CCCCCcCccccccCCcccchhhHHHhhhcCCcc-cccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHH
Q psy7425 215 GKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 293 (331)
Q Consensus 215 ~k~~~~~~srs~ragL~FPVsri~R~Lk~~~~~-~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~A 293 (331)
++.+++..|+|+||||||||+||+|||+++.|+ +||+++|||||+||||||++||||+|+|+|+++++++|+|+||++|
T Consensus 11 ~~~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lA 90 (128)
T 1f66_C 11 GKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLA 90 (128)
T ss_dssp ------CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHH
T ss_pred CCcCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHH
Confidence 445567889999999999999999999999987 5999999999999999999999999999999999999999999999
Q ss_pred hhCcHHHhhhhcCcEecCCcccCCcccccCCcccccC
Q psy7425 294 IRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 330 (331)
Q Consensus 294 I~nDeEL~~L~~~~tia~gGv~p~i~~~l~~~~~~~~ 330 (331)
|+||+|||+||+ +||++|||+||||++|++|+++++
T Consensus 91 I~nDeEL~~Ll~-~tia~ggv~P~i~~~l~~k~~~~~ 126 (128)
T 1f66_C 91 IRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQK 126 (128)
T ss_dssp HHHSHHHHHHCC-SEETTCCCCCCCCGGGC-------
T ss_pred HhccHHHhhhhc-ceecCCccCCCCCHHhcCcccccC
Confidence 999999999996 599999999999999999998654
No 11
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=2.2e-37 Score=279.16 Aligned_cols=185 Identities=40% Similarity=0.593 Sum_probs=155.1
Q ss_pred cCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHH-----h
Q psy7425 109 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAA-----R 183 (331)
Q Consensus 109 k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~-----~ 183 (331)
+-.|.-++..|..+..+|..+..+|+.-|-.-.++.+..+-..+...+.|.+|-||... ++|.|.+.- .
T Consensus 2 ~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~------eIq~Avrl~lpgeLa 75 (192)
T 2jss_A 2 KETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAR------EIQTAVRLILPGELA 75 (192)
T ss_dssp CSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHH------HHHHHHHHHSCSHHH
T ss_pred cchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHH------HHHHHHHHhcCHHHH
Confidence 45688888888888888999999999999999999999999999989999999999997 677666532 2
Q ss_pred ccCCCCCCccccccccccccccccccCCCCCCCCCCcCccccccCCcccchhhHHHhhhcCCcc-cccCCChhHHHHHHH
Q psy7425 184 KSAPATGGVKKPLLNKLLSGVTIAQGGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVM 262 (331)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~sg~gk~~k~~~~~~srs~ragL~FPVsri~R~Lk~~~~~-~Rvs~~A~VyLaAvL 262 (331)
|+| ...+.+... +... .++..|+|+|+||||||+||+|||++++++ .||+++|||||+|||
T Consensus 76 k~A-------------v~eG~kAv~--k~~~---sk~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavL 137 (192)
T 2jss_A 76 KHA-------------VSEGTRAVT--KYSS---STQAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVL 137 (192)
T ss_dssp HHH-------------HHHHHHHHH--HHHH---HCSSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHH
T ss_pred HHH-------------HHHHHHHHH--hhcc---ccccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHH
Confidence 233 000000000 0000 114569999999999999999999999886 699999999999999
Q ss_pred HHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhhhhcCcEecCCcccCCc
Q psy7425 263 EYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNI 318 (331)
Q Consensus 263 EYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~L~~~~tia~gGv~p~i 318 (331)
|||++||||+|+|+|+++++++|+|+||++||+||+|||+||+ +||++|||+|||
T Consensus 138 Eyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~eL~~L~~-~ti~~ggv~p~i 192 (192)
T 2jss_A 138 EYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR-ATIASGGVLPHI 192 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHHHHHHHC-SCCTTTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHHHHHHHh-hhhcCCCcCCCC
Confidence 9999999999999999999999999999999999999999996 699999999997
No 12
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-34 Score=262.94 Aligned_cols=183 Identities=33% Similarity=0.394 Sum_probs=132.6
Q ss_pred hhhhhccCchhHHHHHHHhhccc---cccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHH
Q psy7425 103 TELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLAT 179 (331)
Q Consensus 103 t~lli~k~pF~rlvrei~~~~~~---~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~ 179 (331)
..|||||+|||||||||+++|.+ ++|||++||.|||||+|+|||+||||+||||+|||||||||+ |||||.
T Consensus 8 ~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~k------DiqLar 81 (235)
T 2l5a_A 8 KKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKK------DMQLAR 81 (235)
T ss_dssp ---CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTT------HHHHHH
T ss_pred ccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchh------hHHHHH
Confidence 46999999999999999999986 899999999999999999999999999999999999999997 899998
Q ss_pred HHHhccCCCCCCccccc-c------------------ccccccccccccCC-------CCCCC--CCC----cCcccccc
Q psy7425 180 KAARKSAPATGGVKKPL-L------------------NKLLSGVTIAQGGR-------GKGGK--AKT----KSKTRSSR 227 (331)
Q Consensus 180 ~~~~~~~~~~~~~~~~~-~------------------~~~~~~~~~~~sg~-------gk~~k--~~~----~~~srs~r 227 (331)
++...++.... +=... . ..+.+|.--..+|. .++-. ... +...+.-+
T Consensus 82 rirg~~~~p~e-vme~~~~~~~~~k~~~~~i~~ky~~~~~~gd~idl~tG~iv~dnGh~~~l~~~~~~~~~~~r~~~vLr 160 (235)
T 2l5a_A 82 RIRGQFLVPRG-SMERHKLADENMRKVWSNIISKYESIEEQGDLVDLKTGEIVEDNGHIKTLTANNSTKDKRTKYTSVLR 160 (235)
T ss_dssp TSSCSCCCCSS-SCHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCSSSSCCCCCCCCCCCSCCCCCGGGCCSSTHHHHHH
T ss_pred HHhhccCCchh-HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccCCCCceeeeCcHHHHhhcCCCCCccchhHHHHHH
Confidence 88766652221 11000 0 11122222222222 11100 000 01111111
Q ss_pred CCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhC
Q psy7425 228 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 296 (331)
Q Consensus 228 agL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~n 296 (331)
.-++ ++ +.|+.+.+. .+|||..+-.-+..+||.+..+|+.-|...+...+++.|++.+|.+|+..
T Consensus 161 D~i~--i~-~~RlaRrgG-VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr 225 (235)
T 2l5a_A 161 DIID--IS-DEEDGDKGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 225 (235)
T ss_dssp HHHH--HT-CCTTSCCTT-CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred Hhhc--cc-HHHHhhcCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 1122 22 447777665 48999999999999999999999999999999999999999999999874
No 13
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.97 E-value=1.6e-32 Score=213.58 Aligned_cols=75 Identities=79% Similarity=1.009 Sum_probs=71.2
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHh
Q psy7425 104 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAAR 183 (331)
Q Consensus 104 ~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~ 183 (331)
+|||||+||+||||||+++|++++|||++|+.|||||+|+|||+||||+|+||+||||||||++ |||||.++..
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~k------DiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPK------DIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH------HHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHh------hHHHHHHHhC
Confidence 5899999999999999999999999999999999999999999999999999999999999997 9999998764
Q ss_pred c
Q psy7425 184 K 184 (331)
Q Consensus 184 ~ 184 (331)
.
T Consensus 75 ~ 75 (77)
T 2hue_B 75 E 75 (77)
T ss_dssp C
T ss_pred c
Confidence 4
No 14
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.97 E-value=4.7e-32 Score=213.15 Aligned_cols=76 Identities=50% Similarity=0.698 Sum_probs=70.4
Q ss_pred hhhccCchhHHHHHHHhhcc--ccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHH
Q psy7425 105 LLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAA 182 (331)
Q Consensus 105 lli~k~pF~rlvrei~~~~~--~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~ 182 (331)
|||||+||+||||||+++|+ .++|||++|+.|||||+|+|||+||||+|+||+||||||||++ |||||.++.
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~k------DiqLa~rir 75 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPK------DVQLARRIR 75 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHH------HHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHH------HHHHHHHHc
Confidence 79999999999999999997 6899999999999999999999999999999999999999997 899999887
Q ss_pred hccC
Q psy7425 183 RKSA 186 (331)
Q Consensus 183 ~~~~ 186 (331)
..+.
T Consensus 76 g~~~ 79 (82)
T 3nqj_A 76 GLEE 79 (82)
T ss_dssp C---
T ss_pred cccc
Confidence 6543
No 15
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.2e-28 Score=204.93 Aligned_cols=107 Identities=41% Similarity=0.605 Sum_probs=99.2
Q ss_pred hhccCchhHHHHHHHhhccc---cccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHH
Q psy7425 106 LIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAA 182 (331)
Q Consensus 106 li~k~pF~rlvrei~~~~~~---~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~ 182 (331)
||||+|||||||||++++.+ ++|||++||.|||||+|+|||+||||+||||+|| ++
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA-----~~---------------- 59 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHL-----VP---------------- 59 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CC----------------
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcC-----Cc----------------
Confidence 79999999999999999987 8999999999999999999999999999999999 11
Q ss_pred hccCCCCCCccccccccccccccccccCCCCCCCCCCcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHH
Q psy7425 183 RKSAPATGGVKKPLLNKLLSGVTIAQGGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVM 262 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~sg~gk~~k~~~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvL 262 (331)
+ | .+|||.++-.-+..+|
T Consensus 60 ---g---------------------------------------------------------G--vkRIS~~iy~e~r~vl 77 (121)
T 2ly8_A 60 ---R---------------------------------------------------------G--SKRISGLIYEEVRAVL 77 (121)
T ss_dssp ---C---------------------------------------------------------C--SSCCSSCHHHHHHHHH
T ss_pred ---c---------------------------------------------------------C--ccchhHHHHHHHHHHH
Confidence 0 1 2588999999999999
Q ss_pred HHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 263 EYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 263 EYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
|.+..+|+.-|...+...+++.|+..||.+|++
T Consensus 78 ~~~l~~i~rdav~yaehA~RKTVta~DV~~Alk 110 (121)
T 2ly8_A 78 KSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 999999999999999999999999999999986
No 16
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.87 E-value=3.8e-23 Score=225.14 Aligned_cols=173 Identities=22% Similarity=0.361 Sum_probs=118.7
Q ss_pred cCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHhccCCC
Q psy7425 109 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAARKSAPA 188 (331)
Q Consensus 109 k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~~~~~~ 188 (331)
+--|.-..|.|.+...+++-.+-+||+=+ |..++.|+ ..||+ +.=.||.. ..+ .-.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~--~~~~~~~~-----~~~------~~~~~--- 77 (1049)
T 3ksy_A 20 RGLLVPALKKVQGQVHPTLESNDDALQYV----EELILQLL--NMLCQ--AQPRSASD-----VEE------RVQKS--- 77 (1049)
T ss_dssp SSSSHHHHHHHHHHHCTTSBCCHHHHHHH----HHHHHHHH--HHHHH--TCCCSHHH-----HHH------HHHHH---
T ss_pred HHHHHHHHHHHHHHhCCCCCccHhHHHHH----HHHHHHHH--HHHhc--CCCccHHH-----HHH------HHHHh---
Confidence 34577778888888888998888888654 55667776 35686 33233321 111 00010
Q ss_pred CCCccccccccccccccccccCCCCCCCCCCcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHH
Q psy7425 189 TGGVKKPLLNKLLSGVTIAQGGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAE 268 (331)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~sg~gk~~k~~~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aE 268 (331)
++..+..-+- ..++....|+|+|||||||||||||+| +|+|+.|||++||||||||||||++|
T Consensus 78 -----------~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~ 140 (1049)
T 3ksy_A 78 -----------FPHPIDKWAI-----ADAQSAIEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISAD 140 (1049)
T ss_dssp -----------SCTTHHHHHH-----HHHHHHHTTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCchHHHHH-----HHHHHhhhcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHH
Confidence 1111110000 002234468999999999999999999 89999999999999999999999999
Q ss_pred HHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhhhhcCcEecCCcccCCcccc
Q psy7425 269 VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAV 321 (331)
Q Consensus 269 ILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~L~~~~tia~gGv~p~i~~~ 321 (331)
|||||||+|+++++.+|+|+||++||+||+||+.||++. ...+|++|+....
T Consensus 141 ~l~la~~~~~~~~~~~i~p~~~~~ai~~d~eL~~l~~~d-ee~~~~lp~~~~~ 192 (1049)
T 3ksy_A 141 ILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFHQD-VEDINILSLTDEE 192 (1049)
T ss_dssp HHHHHHHHHHHTTCCBCCHHHHHHHHHHCSSHHHHCC----------------
T ss_pred HHHHHHHHHHHcCCceecCccccccccCCHHHHHHHhhc-cccccCCCCcccc
Confidence 999999999999999999999999999999999999765 4567888876554
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.81 E-value=1.3e-20 Score=152.92 Aligned_cols=82 Identities=17% Similarity=0.346 Sum_probs=62.5
Q ss_pred cccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhh
Q psy7425 223 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNK 302 (331)
Q Consensus 223 srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~ 302 (331)
+++.+++++|||+||+|+|+.+.+..|||.+|+||+++++|||+.||+++|++.|.++++++|+|+||..||++|++|++
T Consensus 3 ~~~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~F 82 (98)
T 1jfi_A 3 SKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAA 82 (98)
T ss_dssp -------CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-------
T ss_pred CcccccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh
Q psy7425 303 LL 304 (331)
Q Consensus 303 L~ 304 (331)
|+
T Consensus 83 L~ 84 (98)
T 1jfi_A 83 NK 84 (98)
T ss_dssp --
T ss_pred HH
Confidence 98
No 18
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.67 E-value=3.9e-17 Score=142.22 Aligned_cols=143 Identities=14% Similarity=0.107 Sum_probs=122.9
Q ss_pred hccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHhccC
Q psy7425 107 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAARKSA 186 (331)
Q Consensus 107 i~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~~~~ 186 (331)
+|+.|..|++|+-+ +..|...+|-++|+++.|.|+..+-.+++..|.|++|-||+..|+..|=.
T Consensus 5 LP~a~V~Riik~~l----g~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~------------ 68 (154)
T 1f1e_A 5 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALAD------------ 68 (154)
T ss_dssp CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH------------
T ss_pred CCccHHHHHHHhcC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH------------
Confidence 67788888877652 45899999999999999999999999999999999999999984432221
Q ss_pred CCCCCccccccccccccccccccCCCCCCCCCCcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHH
Q psy7425 187 PATGGVKKPLLNKLLSGVTIAQGGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLA 266 (331)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~sg~gk~~k~~~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~ 266 (331)
-.|-++ =-.+.+|.||++.|.|+|+++ ...|||.+|.++|..||||++
T Consensus 69 -----------------------~lg~~~--------v~d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~ 116 (154)
T 1f1e_A 69 -----------------------VLMVEG--------VEDYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRAT 116 (154)
T ss_dssp -----------------------HHTCTT--------STTCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHH
T ss_pred -----------------------hccccc--------CCccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHH
Confidence 001111 135678999999999999998 789999999999999999999
Q ss_pred HHHHHHHhhHHhhcCCcccchHHHHHHhhCc
Q psy7425 267 AEVLELAGNAARDNKKTRIIPRHLQLAIRND 297 (331)
Q Consensus 267 aEILelAg~~A~~~~k~rItP~hi~~AI~nD 297 (331)
.+|.+.|.+.|+..++++|+++||.+|+.++
T Consensus 117 ~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 117 EELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 9999999999999999999999999999876
No 19
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.65 E-value=2.6e-16 Score=127.18 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=72.0
Q ss_pred cCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhhhh
Q psy7425 227 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 304 (331)
Q Consensus 227 ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~L~ 304 (331)
-.+++||++||+|+|+.+.+..+||..|++|++.++|||+.+|++.|++.|..+++++|+++||..||.+|++|++|.
T Consensus 15 ~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 15 FRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp -----CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 346899999999999999999999999999999999999999999999999999999999999999999999999998
No 20
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.63 E-value=1.1e-16 Score=120.97 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=58.1
Q ss_pred hccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHH
Q psy7425 107 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLAT 179 (331)
Q Consensus 107 i~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~ 179 (331)
||++||+|++||+ ++.+|+++|+.+|||++|+|++.||+|+|+|+.|++|+||+++ |+++|-
T Consensus 3 lP~a~v~Ri~k~~-----~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~------Di~~A~ 64 (68)
T 1b67_A 3 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAE------DIELAR 64 (68)
T ss_dssp SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH------HHHHHG
T ss_pred CCccHHHHHHhcC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHH------HHHHHH
Confidence 7999999999998 6799999999999999999999999999999999999999997 666664
No 21
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.62 E-value=4.9e-16 Score=130.07 Aligned_cols=75 Identities=21% Similarity=0.343 Sum_probs=72.7
Q ss_pred cccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhhhh
Q psy7425 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 304 (331)
Q Consensus 230 L~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~L~ 304 (331)
.+|||+||+|+|+.+.+..+|+.+|++|++.++|||+.+|++.|++.|.++++++|+|+||..||.+|++|++|.
T Consensus 40 ~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 40 HQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp CSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred CCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999876
No 22
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.51 E-value=1e-14 Score=125.34 Aligned_cols=85 Identities=13% Similarity=0.195 Sum_probs=62.7
Q ss_pred cCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHH-hhcCCcccchHHHHHHhhCcH
Q psy7425 220 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAA-RDNKKTRIIPRHLQLAIRNDE 298 (331)
Q Consensus 220 ~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A-~~~~k~rItP~hi~~AI~nDe 298 (331)
+..+++...+++||++||+|+|+.+....+|+..|+++++.++|||+.+|++.|++.| ..+++++|++.||..||.+++
T Consensus 8 k~~s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e 87 (140)
T 2byk_A 8 PPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNK 87 (140)
T ss_dssp ---------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCS
T ss_pred CCCCCCcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCc
Confidence 3567888899999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHhhhh
Q psy7425 299 ELNKLL 304 (331)
Q Consensus 299 EL~~L~ 304 (331)
+|++|.
T Consensus 88 ~~dFL~ 93 (140)
T 2byk_A 88 NLEFLL 93 (140)
T ss_dssp TTGGGT
T ss_pred hhhhHh
Confidence 999998
No 23
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.48 E-value=4.4e-14 Score=115.35 Aligned_cols=88 Identities=23% Similarity=0.350 Sum_probs=63.3
Q ss_pred ccCCCCCCC-------CCCcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhc
Q psy7425 208 QGGRGKGGK-------AKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 280 (331)
Q Consensus 208 ~sg~gk~~k-------~~~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~ 280 (331)
|+|+||+|| ++.+..++++.+| ||++.|+|+++.+.+ .|||.++..+|+.+|||++.||++.|.+.|+..
T Consensus 1 m~~~gk~gkg~~~~~~kr~~~~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 2yfw_B 1 MSGRGKGGKGLGKGGAKRHRKILRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHA 77 (103)
T ss_dssp -------------------------------CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCccchhhhhhhhhcc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456555444 3345567899999 899999999999887 899999999999999999999999999999999
Q ss_pred CCcccchHHHHHHhhCcH
Q psy7425 281 KKTRIIPRHLQLAIRNDE 298 (331)
Q Consensus 281 ~k~rItP~hi~~AI~nDe 298 (331)
+++.|+++||.+|+++..
T Consensus 78 kRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 78 KRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp TCSEECHHHHHHHHHHHC
T ss_pred CCCcCcHHHHHHHHHHcC
Confidence 999999999999999654
No 24
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.46 E-value=7.9e-14 Score=113.83 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=70.8
Q ss_pred CCcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCc
Q psy7425 218 KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 297 (331)
Q Consensus 218 ~~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nD 297 (331)
+.+..++++.+| ||+..|+|+++.+.+ .||+.++..+|+.+|||++.||++.|.+.|+..+++.|+++||.+|+++.
T Consensus 18 r~~k~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 18 RHRKVLRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp ---CCCCCGGGG--SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred ccccchhhhccc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 445568999999 899999999999887 89999999999999999999999999999999999999999999999965
Q ss_pred H
Q psy7425 298 E 298 (331)
Q Consensus 298 e 298 (331)
.
T Consensus 95 g 95 (103)
T 1tzy_D 95 G 95 (103)
T ss_dssp T
T ss_pred C
Confidence 3
No 25
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.36 E-value=3.6e-13 Score=102.40 Aligned_cols=63 Identities=27% Similarity=0.311 Sum_probs=58.1
Q ss_pred hhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHH
Q psy7425 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLAT 179 (331)
Q Consensus 106 li~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~ 179 (331)
-||+.||.||+|+. +..||+.+|+++|||++|.|+..+++|++.||.|++|.||++. |++||-
T Consensus 6 ~lp~a~v~Rl~r~~-----g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~------DV~lA~ 68 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVE------DIKLAI 68 (70)
T ss_dssp CSCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHH------HHHHHH
T ss_pred cCChHHHHHHHHHc-----CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHH------HHHHHH
Confidence 48999999999986 5789999999999999999999999999999999999999997 666664
No 26
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.22 E-value=1.1e-12 Score=104.80 Aligned_cols=66 Identities=11% Similarity=0.156 Sum_probs=57.6
Q ss_pred cchhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCC
Q psy7425 101 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTG 169 (331)
Q Consensus 101 ~st~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~ 169 (331)
++++++||+++|.|+++++. ..+.+|+.+|+.+||+|+|.|+..|+++++.|+.|++|.||+++|+
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~---~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv 68 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAI---PQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDI 68 (93)
T ss_dssp ----CCCCHHHHHHHHHHTS---CTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred CcccccCChhHHHHHHHHhC---CccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHH
Confidence 35789999999999999983 3468999999999999999999999999999999999999999743
No 27
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=99.07 E-value=1.3e-11 Score=105.29 Aligned_cols=46 Identities=87% Similarity=1.066 Sum_probs=3.8
Q ss_pred CCCCccccccccCCCCCccchhhhhhcccCCCCCCCCCCCCCCccc
Q psy7425 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHPSSSMA 46 (331)
Q Consensus 1 MARTKqtarKstggkapRKqla~Kaarks~p~~ggvKKphRyrpMA 46 (331)
||||||||+||+||++|+|++++++++++.|++||+++||||||-.
T Consensus 1 MARtk~tarkstggkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt 46 (136)
T 1tzy_C 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGT 46 (136)
T ss_dssp -----------------------------------------CCHHH
T ss_pred CCCCccccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCch
Confidence 9999999999999999999999999999999999999999999943
No 28
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.58 E-value=7.9e-08 Score=72.14 Aligned_cols=65 Identities=28% Similarity=0.413 Sum_probs=61.5
Q ss_pred ccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhC
Q psy7425 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 296 (331)
Q Consensus 231 ~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~n 296 (331)
.||.+.|.|+|++. ...||+.+|...|.-++|+++.+|.+-|...|...+++.|+|+||++|++.
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 48999999999998 678999999999999999999999999999999999999999999999863
No 29
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.44 E-value=3e-07 Score=69.47 Aligned_cols=65 Identities=32% Similarity=0.468 Sum_probs=61.6
Q ss_pred ccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhC
Q psy7425 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 296 (331)
Q Consensus 231 ~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~n 296 (331)
.||.+.|.|+++++. ..||+..+...|..++|+++.+|++-|...|...|++.|+++||++|+++
T Consensus 6 ~lp~a~v~Rl~r~~g-~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 6 ELPIAPVDRLIRKAG-AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSCHHHHHHHHHHTT-CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cCChHHHHHHHHHcC-cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 689999999999874 68999999999999999999999999999999999999999999999875
No 30
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.27 E-value=1.2e-07 Score=92.37 Aligned_cols=50 Identities=42% Similarity=0.525 Sum_probs=12.8
Q ss_pred ccccccccccCCCCCcchhhhhhhhcCCCCCCCCCCCCccCCCcchhhhh
Q psy7425 47 RTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREI 96 (331)
Q Consensus 47 RtKqtarkstg~kaprk~~a~k~~~k~~p~~~~~~~~~r~~pg~~al~EI 96 (331)
||||||++++||++|++++++++++++.|.+++++++|||+||++|+.|.
T Consensus 3 ~tk~tarkstggkaprk~~~~k~~rk~~~~~~~~kkp~R~rPGt~a~~e~ 52 (361)
T 2r10_A 3 DPFTTARKSTGGKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQE 52 (361)
T ss_dssp ------------------------------------CCSSCCSCCBCCCS
T ss_pred cccccccCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCccccccc
Confidence 79999999999999999999999999888889999999999999998775
No 31
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.19 E-value=3.7e-06 Score=68.30 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=64.2
Q ss_pred CCCCCCCcCccccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHH
Q psy7425 213 KGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 292 (331)
Q Consensus 213 k~~k~~~~~~srs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~ 292 (331)
++|.++.+...+.+..+ +|..-|.|+++.+. ..|||..+..-|..+|||++.+|++-|...++..+++.|+++||.+
T Consensus 12 ~~g~kr~~k~~r~~i~~--ip~~~I~Rlar~~G-v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ 88 (102)
T 1id3_B 12 KGGAKRHRKILRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVY 88 (102)
T ss_dssp ------------CCGGG--SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred CCccchHHHHHHhccCC--CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHH
Confidence 33444445556777666 68888999999875 4899999999999999999999999999999999999999999999
Q ss_pred HhhCc
Q psy7425 293 AIRND 297 (331)
Q Consensus 293 AI~nD 297 (331)
|++..
T Consensus 89 ALkr~ 93 (102)
T 1id3_B 89 ALKRQ 93 (102)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 99854
No 32
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.16 E-value=3e-07 Score=89.60 Aligned_cols=43 Identities=42% Similarity=0.410 Sum_probs=6.3
Q ss_pred CCccccccccCCCCCccchhhhhhcccCCCCCCCCCCCCCCcc
Q psy7425 3 RTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHPSSSM 45 (331)
Q Consensus 3 RTKqtarKstggkapRKqla~Kaarks~p~~ggvKKphRyrpM 45 (331)
||||||+|||||++|++++++++++++.|.++|+++||||+|-
T Consensus 3 ~tk~tarkstggkaprk~~~~k~~rk~~~~~~~~kkp~R~rPG 45 (361)
T 2r10_A 3 DPFTTARKSTGGKAPRKGGMVVKKRKLATEAGGSDERPKYLPG 45 (361)
T ss_dssp ------------------------------------CCSSCCS
T ss_pred cccccccCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCC
Confidence 8999999999999999999999999988888999999999993
No 33
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.15 E-value=3.7e-06 Score=66.80 Aligned_cols=68 Identities=10% Similarity=0.257 Sum_probs=62.6
Q ss_pred CCcccchhhHHHhhhcC-CcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 228 AGLQFPVGRIHRLLRKG-NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 228 agL~FPVsri~R~Lk~~-~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
..+.||.++|.|+|++. ....+|+.+|...|+-+.|.++.+|.+-|...|...+++.|+++||..|+.
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 36789999999999998 346899999999999999999999999999999999999999999999997
No 34
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.02 E-value=1.1e-05 Score=61.99 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=60.2
Q ss_pred ccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 231 ~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
.||.+.|.|+|++.....+||.+|...|.-++|-++.+|..-|...|..++++.|+++||..|+.
T Consensus 4 ~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 68999999999975446799999999999999999999999999999999999999999999986
No 35
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.97 E-value=6.9e-06 Score=69.25 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=63.8
Q ss_pred CcccchhhHHHhhhc-CCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhhh
Q psy7425 229 GLQFPVGRIHRLLRK-GNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 303 (331)
Q Consensus 229 gL~FPVsri~R~Lk~-~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~L 303 (331)
.+.||+++|.|+|++ .....+|+..|...|+-+.|.|+.+|...|...|...+++.|+++||..|+...+-+++|
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl 82 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFV 82 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTH
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHH
Confidence 578999999999995 445689999999999999999999999999999999999999999999999976544433
No 36
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.63 E-value=8.7e-06 Score=66.11 Aligned_cols=61 Identities=21% Similarity=0.176 Sum_probs=53.7
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCC
Q psy7425 104 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTG 169 (331)
Q Consensus 104 ~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~ 169 (331)
.--||+.+..||.+.. ..-|+..+|.++|+++.|.|+-.+.+|+..++.|++|-||...|+
T Consensus 26 i~~ip~~~I~Rlar~~-----Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV 86 (102)
T 1id3_B 26 IQGITKPAIRRLARRG-----GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDV 86 (102)
T ss_dssp GGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred cCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHH
Confidence 3348999999998764 457899999999999999999999999999999999999999743
No 37
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=97.62 E-value=4.4e-05 Score=61.89 Aligned_cols=67 Identities=22% Similarity=0.150 Sum_probs=57.4
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHH
Q psy7425 104 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKA 181 (331)
Q Consensus 104 ~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~ 181 (331)
.--||+.+..||.+.. ..-|+..+|.++|++..|.|+..+.+|+..++.|++|-||.+. |+.+|-+.
T Consensus 27 ~~gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~------DV~~Alr~ 93 (103)
T 1tzy_D 27 IQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAM------DVVYALKR 93 (103)
T ss_dssp GGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH------HHHHHHHH
T ss_pred cccCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHH------HHHHHHHH
Confidence 3348999988887754 2359999999999999999999999999999999999999997 77777654
No 38
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=97.61 E-value=0.00015 Score=56.66 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=63.5
Q ss_pred ccccCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCc
Q psy7425 224 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 297 (331)
Q Consensus 224 rs~ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nD 297 (331)
+.+..| +|..-|.|+++.+.. .|||..+..-|..+|||++.+|+.-|...++..+++.|+++||.+|++..
T Consensus 5 r~~~~~--ip~~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 5 RDNIQG--ITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp GGGCCS--SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred cccCCC--CCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 344445 688889999998754 89999999999999999999999999999999999999999999999854
No 39
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=97.59 E-value=4.3e-05 Score=61.99 Aligned_cols=67 Identities=22% Similarity=0.187 Sum_probs=56.6
Q ss_pred hhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHH
Q psy7425 105 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAA 182 (331)
Q Consensus 105 lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~ 182 (331)
--||+.+..||.+.. ..-|+..+|.++|++..|.|+..+.+|+..++.|++|-||.+. |+.+|-+..
T Consensus 28 ~gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~------DV~~Alr~~ 94 (103)
T 2yfw_B 28 QGITKPAIRRLARRG-----GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSL------DVVYALKRQ 94 (103)
T ss_dssp --CCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH------HHHHHHHHH
T ss_pred ccCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHH------HHHHHHHHc
Confidence 348999988887754 2369999999999999999999999999999999999999997 677776543
No 40
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.54 E-value=0.00012 Score=63.47 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=60.4
Q ss_pred ccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHh
Q psy7425 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAI 294 (331)
Q Consensus 231 ~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI 294 (331)
-+|..-|.|+|+++--..|||.+|...|+.++|.+..+|...|.+.|...+++.|+++||..|+
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 3789999999999845599999999999999999999999999999999999999999999998
No 41
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=97.51 E-value=1.4e-05 Score=62.51 Aligned_cols=62 Identities=21% Similarity=0.146 Sum_probs=54.1
Q ss_pred hhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCC
Q psy7425 103 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTG 169 (331)
Q Consensus 103 t~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~ 169 (331)
+.--||+.+..||.|.. ..-|+..+|.++|++..|.|+-.+.+|+..++.|++|-||...|+
T Consensus 7 ~~~~ip~~~I~Riar~~-----Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV 68 (84)
T 2hue_C 7 NIQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDV 68 (84)
T ss_dssp GCCSSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred cCCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHH
Confidence 33458899988887754 457899999999999999999999999999999999999999754
No 42
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.22 E-value=9.8e-05 Score=62.17 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=54.5
Q ss_pred hhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCC
Q psy7425 103 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGK 171 (331)
Q Consensus 103 t~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~ 171 (331)
.++.+|..+..|++++. .....++..+|..+|++|+|.|+..|-..++..+.|.+|-||...|+..
T Consensus 6 ~d~~LP~A~I~rImK~~---~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~ 71 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEA---LPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQ 71 (128)
T ss_dssp -----CCSHHHHHHHHH---SCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred ccccCCHHHHHHHHHHh---CcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Confidence 36778999999998876 3456899999999999999999999999999999999999999986543
No 43
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.21 E-value=0.0005 Score=61.01 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=66.5
Q ss_pred cCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhhhh
Q psy7425 227 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 304 (331)
Q Consensus 227 ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~L~ 304 (331)
-..+.||.+.|.|+|++.-...+|+.+|...|.-+++-++.+|...|...|...+++.|+++||..|+. +-+|..++
T Consensus 11 ~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~fv 87 (179)
T 1jfi_B 11 DDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSYI 87 (179)
T ss_dssp -CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGGH
T ss_pred hhhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHHH
Confidence 346789999999999986436799999999999999999999999999999999999999999999998 44554444
No 44
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.21 E-value=0.00078 Score=51.10 Aligned_cols=65 Identities=9% Similarity=0.140 Sum_probs=60.1
Q ss_pred cccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 230 L~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
-.||+.-|.++.+.-.. .+|+.++...|+--+||-+.||++-|.+.++..+++.++.+||..|++
T Consensus 5 s~lp~~~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 36899999999987544 799999999999999999999999999999999999999999999975
No 45
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=97.20 E-value=0.00011 Score=44.82 Aligned_cols=24 Identities=75% Similarity=1.055 Sum_probs=19.8
Q ss_pred hhhcCCCCCCCCCCCCccCCCcch
Q psy7425 69 AARKSAPATGGVKKPHRYRPGTVA 92 (331)
Q Consensus 69 ~~~k~~p~~~~~~~~~r~~pg~~a 92 (331)
++++++|.+++.+++|||+||+||
T Consensus 3 ~ark~~p~~~~~kk~~RyRPGtvA 26 (26)
T 2x4w_B 3 AARKSAPATGGVXKPHRYRXXXXX 26 (26)
T ss_pred ccccCCCCCCccccccccccccCC
Confidence 455667778889999999999986
No 46
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=97.20 E-value=0.00016 Score=59.41 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=49.5
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecC
Q psy7425 104 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKS 167 (331)
Q Consensus 104 ~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~ 167 (331)
++-||+....||.++- +..++..+|+++|+|+.+.|+..+..|++..|-||+|-||...
T Consensus 5 d~~lP~a~I~Ri~r~~-----g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~e 63 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-----VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMA 63 (111)
T ss_dssp -----CHHHHHHHHHH-----HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH
T ss_pred CCCCCHHHHHHHHHHC-----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHH
Confidence 4567888877877665 5689999999999999999999999999999999999999986
No 47
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=97.09 E-value=0.00011 Score=56.31 Aligned_cols=63 Identities=13% Similarity=0.194 Sum_probs=55.1
Q ss_pred hhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCC
Q psy7425 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKA 172 (331)
Q Consensus 106 li~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a 172 (331)
.+|+.+..|+++++. ++.++..+|.+++++++|.|+..|-..++..+.|.+|-||..+|+..|
T Consensus 4 ~LP~A~V~rI~K~~~----p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A 66 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHK----PHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAA 66 (76)
T ss_dssp CCCHHHHHHHHHHHC----TTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHH
T ss_pred cccccHHHHHHHHhC----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 478888889988763 368999999999999999999999999999999999999999844433
No 48
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=97.01 E-value=0.00056 Score=59.25 Aligned_cols=104 Identities=19% Similarity=0.129 Sum_probs=59.9
Q ss_pred HHHHHhccCCCCCCccccccccccccccccccCCCCCCCCCCcCcc-ccccCCcccchhhHHHhhhcCC------ccccc
Q psy7425 178 ATKAARKSAPATGGVKKPLLNKLLSGVTIAQGGRGKGGKAKTKSKT-RSSRAGLQFPVGRIHRLLRKGN------YAERV 250 (331)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~gk~~k~~~~~~s-rs~ragL~FPVsri~R~Lk~~~------~~~Rv 250 (331)
+++.+++++|++|+++++.- +.-+|. - +.+- -..-.+|.||.--|.|++++-. ...|+
T Consensus 38 ~~~aa~ksap~~g~~~~~~~-r~rpg~------------L--rEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRf 102 (156)
T 3r45_A 38 PTPGPSRRGPSLGASSHQHS-RRRQGW------------L--KEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNW 102 (156)
T ss_dssp ----------------------------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEE
T ss_pred CCCCCCCCCCCCCCCCCCCC-CCCCch------------H--HHHHHhccccccccccccHHHHHHHHHHHhccCcccee
Confidence 77889999999999998543 222311 0 0111 1122478898888888888732 24699
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhC
Q psy7425 251 GAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 296 (331)
Q Consensus 251 s~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~n 296 (331)
+++|...|--+.|..+.+++|-+...|...++..|.|+||++|.+=
T Consensus 103 qs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 103 QAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 9999999999999999999999988888889999999999999764
No 49
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.01 E-value=0.00013 Score=64.84 Aligned_cols=69 Identities=12% Similarity=0.199 Sum_probs=59.6
Q ss_pred ccchhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCC
Q psy7425 100 QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKA 172 (331)
Q Consensus 100 q~st~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a 172 (331)
....++.+|+.+..|+++++.. +.++..+|.++|+++++.|+.-|-..+|-.+.|.+|-||...|++.|
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp----~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~A 77 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLP----NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQA 77 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHST----TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CchhhhhcCHHHHHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 3446788999999999999843 78999999999999999999999999999999999999999866544
No 50
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=96.86 E-value=0.00082 Score=55.19 Aligned_cols=70 Identities=9% Similarity=0.049 Sum_probs=60.4
Q ss_pred cccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHH
Q psy7425 230 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEEL 300 (331)
Q Consensus 230 L~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL 300 (331)
+-+|-+-|.|+++.+ -..|||..+...|..+++.++.+|..-|...|...+++.|+++||.+|++.+..+
T Consensus 6 ~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 6 PEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp ----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 468999999999987 4589999999999999999999999999999999999999999999999865443
No 51
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=96.86 E-value=0.001 Score=55.72 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=57.7
Q ss_pred ccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 231 ~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
.|.+ .|+++|++-.....||+.|...|...++.+...|..-|...++.+++..|++++||.||+
T Consensus 37 sy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 37 SYSI-YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp CCHH-HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cHHH-HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4555 799999986655689999999999999999999999999999999999999999999997
No 52
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=96.68 E-value=0.0021 Score=53.71 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=55.9
Q ss_pred hhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 235 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 235 sri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
..|+++|++-.....||+.|...|...++.+...|..-|...++.+++..|++++||.||+
T Consensus 37 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 37 IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 4689999986656689999999999999999999999999999999999999999999997
No 53
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.65 E-value=0.0035 Score=47.23 Aligned_cols=61 Identities=21% Similarity=0.392 Sum_probs=51.1
Q ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHH
Q psy7425 114 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKA 181 (331)
Q Consensus 114 rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~ 181 (331)
++|..|..+..- -+|+..++..|-|-+|.|...+.+|+...+-||+|-||... |+.||.+.
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~e------DVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLD------DVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHH------HHHHHHHH
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHH------HHHHHHHh
Confidence 455566555543 39999999999999999999999999999999999998775 78888753
No 54
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0012 Score=52.49 Aligned_cols=61 Identities=25% Similarity=0.159 Sum_probs=50.7
Q ss_pred cCchhHHHHHHHhhcc--ccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCC
Q psy7425 109 KLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTG 169 (331)
Q Consensus 109 k~pF~rlvrei~~~~~--~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~ 169 (331)
|..++.-|-.|+++.. .++.+..+++.+|-|.+|.|+..+-+|....|-||+|-||...|+
T Consensus 11 Kaal~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV 73 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDL 73 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHH
Confidence 4455566666666652 247899999999999999999999999999999999999999743
No 55
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=96.51 E-value=0.0029 Score=54.01 Aligned_cols=101 Identities=19% Similarity=0.132 Sum_probs=59.2
Q ss_pred HHHhccCCCCCCccccccccccccccccccCCCCCCCCCCcCcc-ccccCCcccchhhHHHhhhcCC------cccccCC
Q psy7425 180 KAARKSAPATGGVKKPLLNKLLSGVTIAQGGRGKGGKAKTKSKT-RSSRAGLQFPVGRIHRLLRKGN------YAERVGA 252 (331)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~gk~~k~~~~~~s-rs~ragL~FPVsri~R~Lk~~~------~~~Rvs~ 252 (331)
+.+++++|++|+++++.- +.-+|+ - +.+- -..-.+|.||.--|.|++++-. ...|+++
T Consensus 24 ~aa~~~~~~~g~~~~~~~-r~rpg~------------L--rEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~ 88 (140)
T 3nqu_A 24 PGPSRRGPSLGASSHQHS-RRRQGW------------L--KEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQA 88 (140)
T ss_dssp --------------------------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECH
T ss_pred CCCCCCCCCCCCCCCCCC-CCCCcc------------H--HHHHHhccccccccccccHHHHHHHHHHHhcccccceecH
Confidence 568889999888887542 222211 0 0111 1122478888888888888732 3579999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 253 GAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 253 ~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
+|...|--+.|..+.+++|-+..-|...++..|.|+||++|.+
T Consensus 89 ~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 89 QALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 9999999999999999999998889888999999999999876
No 56
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=96.48 E-value=0.002 Score=53.17 Aligned_cols=55 Identities=25% Similarity=0.326 Sum_probs=46.2
Q ss_pred hHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCC
Q psy7425 113 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTG 169 (331)
Q Consensus 113 ~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~ 169 (331)
.|+|++...+ .+..+..+++.+|-|.++.|+..+-.|....|-||+|-||...|+
T Consensus 34 ~rIvke~gae--r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV 88 (113)
T 4dra_A 34 GCLCEEVALD--KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDV 88 (113)
T ss_dssp HHHHHHHHHH--HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred HHHHHHHHHH--cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHH
Confidence 4455554433 257799999999999999999999999999999999999999744
No 57
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
Probab=96.36 E-value=0.0013 Score=40.18 Aligned_cols=25 Identities=84% Similarity=1.067 Sum_probs=22.0
Q ss_pred ccchhhhhhcccCCCCCCCCCCCCC
Q psy7425 18 RKQLATKAARKSAPATGGVKKPHPS 42 (331)
Q Consensus 18 RKqla~Kaarks~p~~ggvKKphRy 42 (331)
++|++++++++++|.++|+++|||+
T Consensus 1 rK~la~Kaarks~p~~~g~kk~hR~ 25 (26)
T 3avr_B 1 RKQLATKAARXSAPATGGVKKPXXX 25 (26)
T ss_pred CcccccccccCCCCCCccccccCCC
Confidence 4788999999988889999999985
No 58
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=96.33 E-value=0.0013 Score=39.96 Aligned_cols=21 Identities=76% Similarity=1.004 Sum_probs=17.4
Q ss_pred hhhcccCCCCCCCCCCCCCCc
Q psy7425 24 KAARKSAPATGGVKKPHPSSS 44 (331)
Q Consensus 24 Kaarks~p~~ggvKKphRyrp 44 (331)
+++++++|.+++++++|||||
T Consensus 2 k~ark~~p~~~~~kk~~RyRP 22 (26)
T 2x4w_B 2 KAARKSAPATGGVXKPHRYRX 22 (26)
T ss_pred CccccCCCCCCcccccccccc
Confidence 455667778899999999999
No 59
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.006 Score=48.34 Aligned_cols=78 Identities=14% Similarity=0.052 Sum_probs=58.4
Q ss_pred cCCcccchhhHHHhh-hcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhhhhc
Q psy7425 227 RAGLQFPVGRIHRLL-RKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 305 (331)
Q Consensus 227 ragL~FPVsri~R~L-k~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~L~~ 305 (331)
++.|.+-|++|=.-. +.+ ...|+..+...|+-+++..+.+|.+-+...|+.-|++.|++.+|.++++.++.|..++.
T Consensus 11 Kaal~~~V~ki~~e~~~~~--g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l~ 88 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSE--DIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERVT 88 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSS--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhc--CceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHHHhh
Confidence 345677777765333 222 23577777777777777777777777777788899999999999999999999999886
Q ss_pred C
Q psy7425 306 G 306 (331)
Q Consensus 306 ~ 306 (331)
+
T Consensus 89 ~ 89 (90)
T 3v9r_A 89 Q 89 (90)
T ss_dssp C
T ss_pred c
Confidence 5
No 60
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.31 E-value=0.0061 Score=48.60 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=54.1
Q ss_pred hhhhhhhccchhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCC
Q psy7425 93 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKA 172 (331)
Q Consensus 93 l~EIr~yq~st~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a 172 (331)
+.||+..- ..+.=-..+|..|+ +.|.+.-...-+...+|..++..|+|.|+..|-+.++.+|.|.+|-||.++
T Consensus 4 ~~~~~~~~-~~~~~~~~lP~arI-krImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~----- 76 (97)
T 1n1j_B 4 MEEIRNLT-VKDFRVQELPLARI-KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRN----- 76 (97)
T ss_dssp -----------------CCHHHH-HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH-----
T ss_pred HHHHHhcc-cCCcCCCcCCHHHH-HHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHH-----
Confidence 45666542 22333456777776 556555444468999999999999999999999999999999999999997
Q ss_pred chHHHHHHH
Q psy7425 173 PRKQLATKA 181 (331)
Q Consensus 173 ~~~~~~~~~ 181 (331)
++++|-..
T Consensus 77 -di~~Av~~ 84 (97)
T 1n1j_B 77 -DIAMAITK 84 (97)
T ss_dssp -HHHHHHTT
T ss_pred -HHHHHHhc
Confidence 66666533
No 61
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=96.29 E-value=0.0017 Score=53.01 Aligned_cols=60 Identities=22% Similarity=0.203 Sum_probs=49.0
Q ss_pred CchhHHHHHHHhhcc--ccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCC
Q psy7425 110 LPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTG 169 (331)
Q Consensus 110 ~pF~rlvrei~~~~~--~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~ 169 (331)
..++--|-.|+.+.. .+.++..+++.+|-|.++.|+..+..|+...|-||+|-||...|+
T Consensus 19 aal~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV 80 (107)
T 3b0b_B 19 AAVHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDV 80 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHH
Confidence 344444555555442 357999999999999999999999999999999999999999744
No 62
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.28 E-value=0.012 Score=44.36 Aligned_cols=60 Identities=18% Similarity=0.099 Sum_probs=55.0
Q ss_pred hHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhC
Q psy7425 236 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 296 (331)
Q Consensus 236 ri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~n 296 (331)
-|+++|++... .+++..++..|.-.+|-.+.+|+.-|...|...|++.|+.++|++||..
T Consensus 6 ~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 6 VIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 47889988654 7999999999999999999999999999999999999999999999974
No 63
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=96.26 E-value=0.0018 Score=55.21 Aligned_cols=60 Identities=23% Similarity=0.237 Sum_probs=49.8
Q ss_pred CchhHHHHHHHhhc--cccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCC
Q psy7425 110 LPFQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTG 169 (331)
Q Consensus 110 ~pF~rlvrei~~~~--~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~ 169 (331)
...+.-|-.|+++. ..++.+..+++.+|-|.+|.|+..+-.|....|-||+|-||...|+
T Consensus 19 aAl~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDV 80 (140)
T 3vh5_A 19 AAVHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDV 80 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHH
Confidence 34455556666654 2468899999999999999999999999999999999999999743
No 64
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=96.19 E-value=0.0071 Score=50.03 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=58.3
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHH
Q psy7425 104 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLAT 179 (331)
Q Consensus 104 ~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~ 179 (331)
++=.+.+|..| |+.|+......-+...+|..+++.|+|.|+..|.+.++.+|...+|-||.++ +++.|-
T Consensus 36 d~k~~~lPvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~------di~~Av 104 (119)
T 4g92_C 36 DYKIHQLPLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRS------DIAAAL 104 (119)
T ss_dssp CSSCCSSCHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH------HHHHHH
T ss_pred ccccCCCCHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHH------HHHHHH
Confidence 33356799998 4677765556679999999999999999999999999999999999999997 666655
No 65
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=95.73 E-value=0.0043 Score=46.98 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=46.0
Q ss_pred hccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCC
Q psy7425 107 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKST 168 (331)
Q Consensus 107 i~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d 168 (331)
+|..|+.++. .... --+...+|..+|-+-.|.++-.+.+++..|+-|++|-||+..|
T Consensus 7 lp~~~v~~ia----es~G-i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~D 63 (70)
T 1taf_B 7 ISAESMKVIA----ESIG-VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRD 63 (70)
T ss_dssp CCHHHHHHHH----HHTT-CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred CCHHHHHHHH----HHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHH
Confidence 4445555544 4333 2378899999999999999999999999999999999999873
No 66
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=95.61 E-value=0.0053 Score=50.61 Aligned_cols=79 Identities=15% Similarity=0.179 Sum_probs=62.0
Q ss_pred cCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhhhhcC
Q psy7425 227 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG 306 (331)
Q Consensus 227 ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~L~~~ 306 (331)
++.|.+.|+||=+-.-..+ ...||..+...|+-+++..+.+|..-+...|+.-|++.|++.||.++++.++.|..++++
T Consensus 26 Kaal~y~V~rIvke~gaer-~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~~ 104 (113)
T 4dra_A 26 KAAVHYTVGCLCEEVALDK-EMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITD 104 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 4567888888764332111 124888888888888888888888888888999999999999999999999999888753
No 67
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=95.33 E-value=0.022 Score=50.81 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=55.1
Q ss_pred hhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 235 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 235 sri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
..|+++|++-.....|+..|..+|...++.++..|..-|...++.++++.||+++|+.||+
T Consensus 7 ~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 7 SYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 3689999987666789999999999999999999999898889999999999999999997
No 68
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=95.18 E-value=0.015 Score=47.42 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=63.1
Q ss_pred cCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhhhhc
Q psy7425 227 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 305 (331)
Q Consensus 227 ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~L~~ 305 (331)
++-|+|-|+||-+---. ....+++..+...|+-+++..+.+|..-+...|+.-|++.|+++||.++++.++.|...++
T Consensus 18 Kaal~~~V~rI~~~~g~-~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~ 95 (107)
T 3b0b_B 18 RAAVHYTTGCLCQDVAE-DKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh-hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHH
Confidence 45677888877643322 1235899999999998888888889888888899999999999999999999999877764
No 69
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=94.72 E-value=0.049 Score=42.38 Aligned_cols=65 Identities=22% Similarity=0.120 Sum_probs=54.0
Q ss_pred ccchhhHHHhhhcCC------cccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 231 QFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 231 ~FPVsri~R~Lk~~~------~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
-+|.-=|.|++++-. ...|++++|-..|--+.|....+++|-+..-|...++..|.|+||++|.+
T Consensus 3 LI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 3 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 345555666666522 35699999999999999999999999998889999999999999999875
No 70
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=94.64 E-value=0.061 Score=41.34 Aligned_cols=66 Identities=24% Similarity=0.241 Sum_probs=54.4
Q ss_pred cccchhhHHHhhhcC----CcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 230 LQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 230 L~FPVsri~R~Lk~~----~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
|-+|.-=+.|++++- .-..|++++|-..|--+.|....++.|-+..-|...++..|.|+||++|.+
T Consensus 2 lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 2 ALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 345555566666652 124799999999999999999999999998889999999999999999975
No 71
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=94.51 E-value=0.036 Score=46.17 Aligned_cols=84 Identities=32% Similarity=0.302 Sum_probs=66.3
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHh
Q psy7425 104 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAAR 183 (331)
Q Consensus 104 ~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~ 183 (331)
.|.+|-.+|.|+.++- ....|...+|-..|-.+-|.+...++|-+...|.|.++.+|.|. ++++|.++|.
T Consensus 21 gL~fPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~------hi~lAI~nDe 90 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR------HLQLAIRNDE 90 (123)
T ss_dssp TCSSCHHHHHHHHHHT----TSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH------HHHHHHHTSH
T ss_pred CeeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHH------HHHHHHhccH
Confidence 5667777777776542 23358999999999999999999999999999999999999997 8999998775
Q ss_pred ccCCCCCCcccccccccccccccccc
Q psy7425 184 KSAPATGGVKKPLLNKLLSGVTIAQG 209 (331)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~s 209 (331)
. |+.+..++.|..+
T Consensus 91 E------------L~~Ll~~vtia~g 104 (123)
T 2nqb_C 91 E------------LNKLLSGVTIAQG 104 (123)
T ss_dssp H------------HHHHTTTEEETTC
T ss_pred H------------HHHHhcCceeCCC
Confidence 4 3445556665443
No 72
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=94.32 E-value=0.07 Score=42.04 Aligned_cols=64 Identities=22% Similarity=0.384 Sum_probs=53.0
Q ss_pred ccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhc-CCcccchHHHHHHhh
Q psy7425 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN-KKTRIIPRHLQLAIR 295 (331)
Q Consensus 231 ~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~-~k~rItP~hi~~AI~ 295 (331)
.|+=..|+|++.. .....|+.+..+.|+++--.++.||+|.|....... ....|.|.||+.|.+
T Consensus 16 ~f~k~~vKrl~~~-~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 16 AFPKAAIKRLIQS-ITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp CCCHHHHHHHHHH-HHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-HcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 4666678888864 456789999999999999999999999998887654 455899999998875
No 73
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=94.25 E-value=0.047 Score=45.28 Aligned_cols=86 Identities=23% Similarity=0.264 Sum_probs=68.7
Q ss_pred hhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHH
Q psy7425 103 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAA 182 (331)
Q Consensus 103 t~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~ 182 (331)
..|-+|-.+|.|+.++- ....|...+|-..|-.+-|.+...++|.+...|.|.++.+|.|. ++++|.++|
T Consensus 19 agLqfPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~------hi~lAI~nD 88 (120)
T 2f8n_G 19 AGVIFPVGRMLRYIKKG----HPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPR------HILLAVAND 88 (120)
T ss_dssp HTCSSCHHHHHHHHHHH----SSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH------HHHHHHHTS
T ss_pred cCccCChHHHHHHHHcC----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHH------HHHHHHhcC
Confidence 35667777888887653 22358999999999999999999999999999999999999997 899999877
Q ss_pred hccCCCCCCccccccccccccccccccC
Q psy7425 183 RKSAPATGGVKKPLLNKLLSGVTIAQGG 210 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~sg 210 (331)
.. |+.+..++.|..+|
T Consensus 89 eE------------L~~Ll~~vtia~gg 104 (120)
T 2f8n_G 89 EE------------LNQLLKGVTIASGG 104 (120)
T ss_dssp HH------------HHHHTTTEEETTCC
T ss_pred HH------------HHHHhCCceECCCC
Confidence 54 44566666666554
No 74
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=94.25 E-value=0.036 Score=47.19 Aligned_cols=79 Identities=15% Similarity=0.194 Sum_probs=62.5
Q ss_pred cCCcccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhhhhcC
Q psy7425 227 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG 306 (331)
Q Consensus 227 ragL~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~L~~~ 306 (331)
++-|+|-|++|=.-.-. .....|+..+...|+-+++..+.+|..-+...|+.-|++.|++.||.++++.++.|..++.+
T Consensus 18 KaAl~y~VgkIvee~~~-~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~ 96 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAE-DKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQ 96 (140)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHH
Confidence 45678888887643211 11246888888888888888888888888888999999999999999999999999988863
No 75
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=94.20 E-value=0.045 Score=45.94 Aligned_cols=71 Identities=20% Similarity=0.122 Sum_probs=59.6
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHh
Q psy7425 104 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAAR 183 (331)
Q Consensus 104 ~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~ 183 (331)
.|.+|-.+|.|+.++- ....|...+|-..|-.+-|.+...++|-+...|.|.++.+|.|+ +++||.++|.
T Consensus 23 gLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~------hi~lAI~nDe 92 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKG----NYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR------HLQLAIRNDE 92 (129)
T ss_dssp TCSSCHHHHHHHHHHT----TSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH------HHHHHHHTSH
T ss_pred ceeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHH------HHHHHHhccH
Confidence 5667777777776542 23358999999999999999999999999999999999999997 8999998775
Q ss_pred c
Q psy7425 184 K 184 (331)
Q Consensus 184 ~ 184 (331)
.
T Consensus 93 E 93 (129)
T 1tzy_A 93 E 93 (129)
T ss_dssp H
T ss_pred H
Confidence 4
No 76
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=94.13 E-value=0.043 Score=47.19 Aligned_cols=72 Identities=19% Similarity=0.124 Sum_probs=59.9
Q ss_pred hhhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHH
Q psy7425 103 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAA 182 (331)
Q Consensus 103 t~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~ 182 (331)
..|.+|-.+|.|+.++ ...-.|...+|-..|-.+-|.+...++|-+...|.|.++.+|.|+ +++||.++|
T Consensus 41 agLqFPVgrI~R~LK~----~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItpr------hI~lAI~nD 110 (149)
T 2f8n_K 41 AGLQFPVGRVHRLLRK----GNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPR------HLQLAIRND 110 (149)
T ss_dssp HTCSSCHHHHHHHHHH----TTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH------HHHHHHHHS
T ss_pred CCeeccHHHHHHHHHc----cccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHH------HHHHHHhcc
Confidence 3566777777777654 223348999999999999999999999999999999999999997 899999887
Q ss_pred hc
Q psy7425 183 RK 184 (331)
Q Consensus 183 ~~ 184 (331)
..
T Consensus 111 eE 112 (149)
T 2f8n_K 111 EE 112 (149)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 77
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=93.95 E-value=0.023 Score=45.39 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=47.3
Q ss_pred cCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCC
Q psy7425 109 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTG 169 (331)
Q Consensus 109 k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~ 169 (331)
.+|..|+ +.|.......-+...+|...+-.|.|.|+..|.+.++.++.|.+|-||.++|+
T Consensus 11 ~fPvaRI-krimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di 70 (98)
T 1jfi_A 11 RFPPARI-KKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 70 (98)
T ss_dssp CCCHHHH-HHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHH
T ss_pred CCChHHH-HHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHH
Confidence 4677776 45555444445899999999999999999999999999999999999999843
No 78
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=93.76 E-value=0.071 Score=42.92 Aligned_cols=68 Identities=24% Similarity=0.184 Sum_probs=55.7
Q ss_pred CCcccchhhHHHhhhcCC-------cccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 228 AGLQFPVGRIHRLLRKGN-------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 228 agL~FPVsri~R~Lk~~~-------~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
.+|.+|..-|.|++++-. ...|++++|-..|--+.|..+.+++|-+..-|...++..|.|+||++|.+
T Consensus 24 t~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 24 TDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 478888888888887732 15799999999999999999999999998889999999999999999964
No 79
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=92.12 E-value=0.064 Score=45.63 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=46.5
Q ss_pred cCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhh-hhcCceeeecCCCCCCchHHHHH
Q psy7425 109 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCA-IHAKRQTARKSTGGKAPRKQLAT 179 (331)
Q Consensus 109 k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca-~HakRvTi~~~d~~~a~~~~~~~ 179 (331)
.+|..|+ +.|++.-...-....+|..+++.|+|.|+-.|.+.++.++ ...+|-||.++ +++.|-
T Consensus 19 ~LPlaRI-KrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~------Dl~~AV 83 (140)
T 2byk_A 19 FLPLSRV-RTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYE------HLSQVV 83 (140)
T ss_dssp -----------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHH------HHHHHH
T ss_pred CCCHHHH-HHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHH------HHHHHH
Confidence 4666665 6666655445689999999999999999999999999999 99999999997 655555
No 80
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=91.70 E-value=0.21 Score=41.95 Aligned_cols=71 Identities=21% Similarity=0.130 Sum_probs=58.6
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHh
Q psy7425 104 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAAR 183 (331)
Q Consensus 104 ~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~ 183 (331)
.|.+|-.+|.|+.++ -....|...+|-..|-.+-|.+...++|-+...|.|.++.+|.|+ +++||.++|.
T Consensus 23 gLqfPV~rI~R~Lk~----~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~------hI~lAI~nDe 92 (131)
T 1id3_C 23 GLTFPVGRVHRLLRR----GNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPR------HLQLAIRNDD 92 (131)
T ss_dssp TCSSCHHHHHHHHHT----TCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH------HHHHHHHTCH
T ss_pred CeecCHHHHHHHHHc----cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHH------HHHHHHhccH
Confidence 455666777777543 223348999999999999999999999999999999999999997 8999998775
Q ss_pred c
Q psy7425 184 K 184 (331)
Q Consensus 184 ~ 184 (331)
.
T Consensus 93 E 93 (131)
T 1id3_C 93 E 93 (131)
T ss_dssp H
T ss_pred H
Confidence 4
No 81
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=91.29 E-value=0.57 Score=36.50 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=56.1
Q ss_pred CCcccchhhHHHhhhcCC--cccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHH
Q psy7425 228 AGLQFPVGRIHRLLRKGN--YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 293 (331)
Q Consensus 228 agL~FPVsri~R~Lk~~~--~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~A 293 (331)
++-.||..-|.|+|+..- ..-||+.+|-.-++..|+.|+.|.+-.|...|...+...|..+||+..
T Consensus 9 ~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki 76 (84)
T 4dra_E 9 AGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKV 76 (84)
T ss_dssp --CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 456899999999999532 235999999999999999999999999999998888888999999864
No 82
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=90.88 E-value=0.038 Score=48.00 Aligned_cols=21 Identities=95% Similarity=1.164 Sum_probs=12.7
Q ss_pred CCCccccccccCCCCCccchh
Q psy7425 2 ARTKQTARKSTGGKAPRKQLA 22 (331)
Q Consensus 2 ARTKqtarKstggkapRKqla 22 (331)
|||||+||||||+|++.+++.
T Consensus 1 ~~~~~~~r~s~~~K~~~~~~r 21 (159)
T 3a1b_A 1 ARTKQTARKSTGGKAPRKQLR 21 (159)
T ss_dssp CEEEECCCC-------CHHHH
T ss_pred CccccccccccCCCcchHHHH
Confidence 799999999999999999983
No 83
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=90.87 E-value=0.43 Score=36.88 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=56.4
Q ss_pred CcccchhhHHHhhhcCC--cccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHH
Q psy7425 229 GLQFPVGRIHRLLRKGN--YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA 293 (331)
Q Consensus 229 gL~FPVsri~R~Lk~~~--~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~A 293 (331)
+-.||..-|.++|+..- ...||+.+|-.-++..|+.|+.|.+..|...|...+...|..+||+..
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKV 72 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence 34799999999998732 245999999999999999999999999999998888889999999873
No 84
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=90.75 E-value=0.57 Score=38.96 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=54.0
Q ss_pred CchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHH
Q psy7425 110 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATK 180 (331)
Q Consensus 110 ~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~ 180 (331)
-.|..+|..|+-+..+|..+.+.|+..|-.-.++++-.+-..+-..+.|.+|-||..+ +||.|-+
T Consensus 33 esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~Titsr------eIqtAvr 97 (123)
T 2nqb_D 33 ESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSR------EIQTAVR 97 (123)
T ss_dssp CCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHH------HHHHHHH
T ss_pred chHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHH------HHHHHHH
Confidence 4467777777777788999999999998888888888888888888999999999998 6777653
No 85
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=90.64 E-value=0.036 Score=46.14 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=40.2
Q ss_pred cccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCC
Q psy7425 126 DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKST 168 (331)
Q Consensus 126 ~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d 168 (331)
--|...++-+.+.++.|.||-.+..|+...+.||+|-||...|
T Consensus 62 vkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~D 104 (121)
T 2ly8_A 62 SKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLD 104 (121)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHH
Confidence 4578999999999999999999999999999999999999974
No 86
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=90.56 E-value=0.18 Score=38.66 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=54.2
Q ss_pred hhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHH
Q psy7425 106 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLA 178 (331)
Q Consensus 106 li~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~ 178 (331)
++.|--.+.||++| .+...+..++-+.|.+-|++|+-+..+.+-..|-|.+--||..+ |+|+.
T Consensus 5 vl~k~~L~~Lv~~i----dp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~k------Dvql~ 67 (76)
T 1h3o_B 5 VLTKKKLQDLVREV----DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVK------DVQLH 67 (76)
T ss_dssp SSCHHHHHHHHHHH----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHH------HHHHH
T ss_pred cccHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHH------HHHHH
Confidence 45777788888888 45688999999999999999999999999999999999888876 66654
No 87
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=90.42 E-value=0.61 Score=38.93 Aligned_cols=65 Identities=15% Similarity=0.133 Sum_probs=54.6
Q ss_pred CchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHH
Q psy7425 110 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATK 180 (331)
Q Consensus 110 ~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~ 180 (331)
-.|..+|..|+-+..+|..+.+.|+..|-.-.++++-.+-..+-..+.|.+|-||..+ +||.|-+
T Consensus 36 esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~Titsr------eIqtAvr 100 (126)
T 1tzy_B 36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSR------EIQTAVR 100 (126)
T ss_dssp CCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH------HHHHHHH
T ss_pred ccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHH------HHHHHHH
Confidence 4577777777777788999999999999888888888888888889999999999998 6777653
No 88
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
Probab=89.70 E-value=0.12 Score=31.07 Aligned_cols=25 Identities=84% Similarity=1.042 Sum_probs=19.9
Q ss_pred cchhhhhhhhcCCCCCCCCCCCCcc
Q psy7425 62 RKQLATKAARKSAPATGGVKKPHRY 86 (331)
Q Consensus 62 rk~~a~k~~~k~~p~~~~~~~~~r~ 86 (331)
+++++++++++++|.+++++++||.
T Consensus 1 rK~la~Kaarks~p~~~g~kk~hR~ 25 (26)
T 3avr_B 1 RKQLATKAARXSAPATGGVKKPXXX 25 (26)
T ss_pred CcccccccccCCCCCCccccccCCC
Confidence 3677788888888888888888874
No 89
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=88.81 E-value=0.68 Score=38.67 Aligned_cols=72 Identities=14% Similarity=0.059 Sum_probs=59.7
Q ss_pred hhhhccCchhHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCCCCCchHHHHHHHHh
Q psy7425 104 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTGGKAPRKQLATKAAR 183 (331)
Q Consensus 104 ~lli~k~pF~rlvrei~~~~~~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~~~a~~~~~~~~~~~ 183 (331)
.|.+|-.+|.|+.++- -....|...+|-..|-.+-|.+...++|-+...|-|.++.+|.|+ +++||.++|.
T Consensus 25 gLqfPV~ri~R~Lk~~---~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItpr------hi~lAI~nDe 95 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSR---TTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR------HLQLAIRGDE 95 (128)
T ss_dssp TCSSCHHHHHHHHHHT---SCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHH------HHHHHHHHSH
T ss_pred CccCChHHHHHHHHHc---ccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHH------HHHHHHhccH
Confidence 5667777777776542 112358999999999999999999999999999999999999997 8999998886
Q ss_pred c
Q psy7425 184 K 184 (331)
Q Consensus 184 ~ 184 (331)
.
T Consensus 96 E 96 (128)
T 1f66_C 96 E 96 (128)
T ss_dssp H
T ss_pred H
Confidence 5
No 90
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=83.97 E-value=0.25 Score=45.33 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=41.2
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCceeeecCCC
Q psy7425 125 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQTARKSTG 169 (331)
Q Consensus 125 ~~~r~~~~al~aLQea~E~~lv~lfed~~lca~HakRvTi~~~d~ 169 (331)
.--|...++.+.+.++.|.||-.+..|+...+.||+|-||...|+
T Consensus 175 GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV 219 (235)
T 2l5a_A 175 GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDV 219 (235)
T ss_dssp TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHH
Confidence 346899999999999999999999999999999999999998643
No 91
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=83.68 E-value=0.25 Score=42.88 Aligned_cols=20 Identities=100% Similarity=1.232 Sum_probs=12.1
Q ss_pred cccccccccccCCCCCcchh
Q psy7425 46 ARTKQTARKSTGGKAPRKQL 65 (331)
Q Consensus 46 ARtKqtarkstg~kaprk~~ 65 (331)
|||+|+|||++|+|++.+++
T Consensus 1 ~~~~~~~r~s~~~K~~~~~~ 20 (159)
T 3a1b_A 1 ARTKQTARKSTGGKAPRKQL 20 (159)
T ss_dssp CEEEECCCC-------CHHH
T ss_pred CccccccccccCCCcchHHH
Confidence 79999999999999999987
No 92
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=77.13 E-value=2.1 Score=34.63 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=34.5
Q ss_pred HHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhhhhc
Q psy7425 266 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 305 (331)
Q Consensus 266 ~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~L~~ 305 (331)
+.++|+.|-+.|...+...|+|+||-+|+-.|++...+|.
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~ 45 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHH
Confidence 3578999999999999999999999999988877666664
No 93
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=69.18 E-value=4.3 Score=32.87 Aligned_cols=33 Identities=30% Similarity=0.208 Sum_probs=29.4
Q ss_pred HHHHHHHHhhHHhhcCCcccchHHHHHHhhCcH
Q psy7425 266 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 298 (331)
Q Consensus 266 ~aEILelAg~~A~~~~k~rItP~hi~~AI~nDe 298 (331)
+.++|+.|...|...+...|+|+||-+|+-+|+
T Consensus 10 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 10 FQLALADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 357899999999999999999999999997765
No 94
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=68.81 E-value=13 Score=28.26 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=57.8
Q ss_pred ccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHHHHhhCc
Q psy7425 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND 297 (331)
Q Consensus 231 ~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~~AI~nD 297 (331)
.++-.++..++++=.-...+...+--.|.-+.+-|+..+++.|...|+..+...+.+++|++.+..+
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 4666778888887555678888999999999999999999999999999999999999999877543
No 95
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=67.38 E-value=3.5 Score=33.61 Aligned_cols=40 Identities=30% Similarity=0.312 Sum_probs=32.3
Q ss_pred HHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHH--Hhhhhc
Q psy7425 266 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE--LNKLLS 305 (331)
Q Consensus 266 ~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeE--L~~L~~ 305 (331)
+.++|+.|-+.|...+...|+|+||-+++-.+++ ...+|.
T Consensus 10 ~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (150)
T 2y1q_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQ 51 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHH
Confidence 3578899999999999999999999999976654 444443
No 96
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=67.21 E-value=3.2 Score=34.08 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=32.6
Q ss_pred HHHHHHHHhhHHhhcCCcccchHHHHHHhhCcH--HHhhhhc
Q psy7425 266 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLS 305 (331)
Q Consensus 266 ~aEILelAg~~A~~~~k~rItP~hi~~AI~nDe--EL~~L~~ 305 (331)
+.++|+.|.+.|...+...|+|+||-+|+-.|+ ....+|.
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 53 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLS 53 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHH
Confidence 357899999999999999999999999998764 3445543
No 97
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=65.40 E-value=3.8 Score=33.56 Aligned_cols=40 Identities=28% Similarity=0.268 Sum_probs=32.4
Q ss_pred HHHHHHHHhhHHhhcCCcccchHHHHHHhhCc--HHHhhhhc
Q psy7425 266 AAEVLELAGNAARDNKKTRIIPRHLQLAIRND--EELNKLLS 305 (331)
Q Consensus 266 ~aEILelAg~~A~~~~k~rItP~hi~~AI~nD--eEL~~L~~ 305 (331)
+.++|+.|.+.|...+...|+|+||-+|+-.| .....+|.
T Consensus 11 ~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 52 (146)
T 3fh2_A 11 ARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALE 52 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHH
Confidence 35789999999999999999999999999865 34455553
No 98
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=60.22 E-value=3.7 Score=34.62 Aligned_cols=26 Identities=69% Similarity=1.085 Sum_probs=20.2
Q ss_pred cchhhhhh-hhcCCCCCCCCCCCCccC
Q psy7425 62 RKQLATKA-ARKSAPATGGVKKPHRYR 87 (331)
Q Consensus 62 rk~~a~k~-~~k~~p~~~~~~~~~r~~ 87 (331)
++++..+. +.+++|.+++++++||||
T Consensus 110 qKeL~~kak~~Ks~p~tgGvkk~hr~r 136 (136)
T 2k3y_A 110 KKRLANEAGSTGSAPATGGVXKPHRYR 136 (136)
T ss_dssp HHHHHHHSCSCCCSTTCTTSCCCSSCC
T ss_pred HHHHHHHHHhhccCCCCCCccCCCcCC
Confidence 45566554 367899999999999996
No 99
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=59.58 E-value=6.2 Score=32.28 Aligned_cols=39 Identities=38% Similarity=0.482 Sum_probs=31.6
Q ss_pred HHHHHHHhhHHhhcCCcccchHHHHHHhhCcHH--Hhhhhc
Q psy7425 267 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE--LNKLLS 305 (331)
Q Consensus 267 aEILelAg~~A~~~~k~rItP~hi~~AI~nDeE--L~~L~~ 305 (331)
.++|+.|...|...+...|+++||-+|+-.|++ ...+|.
T Consensus 87 ~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~ 127 (145)
T 3fes_A 87 KQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILN 127 (145)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHH
Confidence 457888989999999999999999999986653 556664
No 100
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=58.55 E-value=6.9 Score=33.56 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=38.2
Q ss_pred HHHHHHHHHHH---HHHHHHHhhHHhhcCCcccchHHHHHHhhCcH--HHhhhhc
Q psy7425 256 VYLAAVMEYLA---AEVLELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLS 305 (331)
Q Consensus 256 VyLaAvLEYL~---aEILelAg~~A~~~~k~rItP~hi~~AI~nDe--EL~~L~~ 305 (331)
+.+...++-|+ .++|+.|.+.|...+...|.|+||-+|+-.|+ ....++.
T Consensus 16 ~~l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~ 70 (171)
T 3zri_A 16 IELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLK 70 (171)
T ss_dssp CCHHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHH
T ss_pred hhHHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHH
Confidence 34556666655 45899999999999999999999999998764 3444443
No 101
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=58.47 E-value=8.1 Score=31.55 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=31.8
Q ss_pred HHHHHHHhhHHhhcCCcccchHHHHHHhhCcH--HHhhhhc
Q psy7425 267 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLLS 305 (331)
Q Consensus 267 aEILelAg~~A~~~~k~rItP~hi~~AI~nDe--EL~~L~~ 305 (331)
.++|+.|...|...+...|+++||-+|+-.|+ ....+|.
T Consensus 87 ~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~ 127 (146)
T 3fh2_A 87 KKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLV 127 (146)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHH
Confidence 46788898999999999999999999998654 4566664
No 102
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=50.74 E-value=13 Score=29.69 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=31.4
Q ss_pred HHHHHHHhhHHhhcCCcccchHHHHHHhhCcHH--Hhhhhc
Q psy7425 267 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE--LNKLLS 305 (331)
Q Consensus 267 aEILelAg~~A~~~~k~rItP~hi~~AI~nDeE--L~~L~~ 305 (331)
.++|+.|..+|...+...|.++||-+|+-.|++ ...++.
T Consensus 85 ~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~ 125 (143)
T 1k6k_A 85 QRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLR 125 (143)
T ss_dssp HHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHH
Confidence 467889999999989999999999999987653 445554
No 103
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=49.73 E-value=18 Score=29.02 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=31.4
Q ss_pred HHHHHHHHhhHHhhcCCcccchHHHHHHhhC-cHHHhhhhc
Q psy7425 266 AAEVLELAGNAARDNKKTRIIPRHLQLAIRN-DEELNKLLS 305 (331)
Q Consensus 266 ~aEILelAg~~A~~~~k~rItP~hi~~AI~n-DeEL~~L~~ 305 (331)
+.++|+.|...|...+...|+++||-+|+-. |.....++.
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L~ 127 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHH
Confidence 3567888888898889999999999999984 444555554
No 104
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=47.44 E-value=17 Score=31.10 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=28.8
Q ss_pred HHHHHHHhhHHh-hcCCcccchHHHHHHhhCcH
Q psy7425 267 AEVLELAGNAAR-DNKKTRIIPRHLQLAIRNDE 298 (331)
Q Consensus 267 aEILelAg~~A~-~~~k~rItP~hi~~AI~nDe 298 (331)
.++|+.|..+|. ..+...|.++||-+|+-.|+
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 457889999999 89999999999999999877
No 105
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=47.24 E-value=28 Score=29.61 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=48.8
Q ss_pred ccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHH
Q psy7425 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQ 291 (331)
Q Consensus 231 ~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~ 291 (331)
.+++.+++++++.. ..--|..+-.-=+..++|--+.++++.|-..|+.|++--|.|.||-
T Consensus 2 vm~~~~~e~lFR~a-a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLP 61 (148)
T 1wwi_A 2 LMKVAEFERLFRQA-AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLP 61 (148)
T ss_dssp CSCHHHHHHHHHHH-HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSC
T ss_pred cCCHHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCC
Confidence 47889999999873 2335556666667788888899999999999999999999999864
No 106
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=43.55 E-value=15 Score=29.74 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=27.9
Q ss_pred HHHHHHHHhhHHhhcCCcccchHHHHHHhhCcH
Q psy7425 266 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 298 (331)
Q Consensus 266 ~aEILelAg~~A~~~~k~rItP~hi~~AI~nDe 298 (331)
+.++|+.|..+|...+...|+++||-+|+-.|+
T Consensus 84 ~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~ 116 (150)
T 2y1q_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREG 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCC
Confidence 346788888999988999999999999997654
No 107
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=36.03 E-value=28 Score=35.88 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=35.0
Q ss_pred HHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhhhhc
Q psy7425 266 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 305 (331)
Q Consensus 266 ~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~L~~ 305 (331)
+.++|+.|-+.|...+..-|+|+||-+++-.|++...++.
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~ 45 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHH
Confidence 3578999999999999999999999999998887777664
No 108
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=28.54 E-value=21 Score=29.96 Aligned_cols=23 Identities=61% Similarity=0.855 Sum_probs=18.0
Q ss_pred hHHHHHHHH-hccCCCCCCccccc
Q psy7425 174 RKQLATKAA-RKSAPATGGVKKPL 196 (331)
Q Consensus 174 ~~~~~~~~~-~~~~~~~~~~~~~~ 196 (331)
..+|+.+.. ++|+|+++|||+|-
T Consensus 110 qKeL~~kak~~Ks~p~tgGvkk~h 133 (136)
T 2k3y_A 110 KKRLANEAGSTGSAPATGGVXKPH 133 (136)
T ss_dssp HHHHHHHSCSCCCSTTCTTSCCCS
T ss_pred HHHHHHHHHhhccCCCCCCccCCC
Confidence 456777764 78999999999974
No 109
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=25.23 E-value=37 Score=29.50 Aligned_cols=60 Identities=13% Similarity=0.048 Sum_probs=48.7
Q ss_pred ccchhhHHHhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHhhHHhhcCCcccchHHHH
Q psy7425 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQ 291 (331)
Q Consensus 231 ~FPVsri~R~Lk~~~~~~Rvs~~A~VyLaAvLEYL~aEILelAg~~A~~~~k~rItP~hi~ 291 (331)
.+++.+++++++.. ..--|..+-.-=+..++|--+.++|+.|-..|+.|++--|.|.||-
T Consensus 26 vmg~~kferlFR~a-agLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLP 85 (171)
T 1r4v_A 26 PKGFDKLDHYFRTE-LDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLN 85 (171)
T ss_dssp CTTHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSC
T ss_pred cCChHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCC
Confidence 78999999999873 2334555556667778888889999999999999999999999764
No 110
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=23.92 E-value=41 Score=32.74 Aligned_cols=39 Identities=28% Similarity=0.265 Sum_probs=31.5
Q ss_pred HHHHHHHHhhHHhhcCCcccchHHHHHHhhCc--HHHhhhh
Q psy7425 266 AAEVLELAGNAARDNKKTRIIPRHLQLAIRND--EELNKLL 304 (331)
Q Consensus 266 ~aEILelAg~~A~~~~k~rItP~hi~~AI~nD--eEL~~L~ 304 (331)
+.++|+.|-..|...+...|+|+||-+++-.+ .....+|
T Consensus 10 a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL 50 (468)
T 3pxg_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (468)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHH
Confidence 35788999999999999999999999999765 3344444
No 111
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=23.71 E-value=2.4e+02 Score=21.38 Aligned_cols=49 Identities=18% Similarity=0.303 Sum_probs=34.6
Q ss_pred HHHHHHhhHHhhcCCcccchHHHHHHhh------CcHHHhhhhcCcEecCCcccC
Q psy7425 268 EVLELAGNAARDNKKTRIIPRHLQLAIR------NDEELNKLLSGVTIAQGGVLP 316 (331)
Q Consensus 268 EILelAg~~A~~~~k~rItP~hi~~AI~------nDeEL~~L~~~~tia~gGv~p 316 (331)
+.+..+-+....++...|+..++..++. .++|+..+|.....-+.|.|.
T Consensus 96 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~ 150 (161)
T 3fwb_A 96 DEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEIN 150 (161)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCSSSSSSEE
T ss_pred HHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCc
Confidence 3444455555556777899999999886 677899999866555556543
No 112
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=23.03 E-value=80 Score=23.92 Aligned_cols=54 Identities=11% Similarity=0.179 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhHHhhcCCc-ccchHHHHHHhhC-----------cHHHhhhhcCcEecCCccc
Q psy7425 262 MEYLAAEVLELAGNAARDNKKT-RIIPRHLQLAIRN-----------DEELNKLLSGVTIAQGGVL 315 (331)
Q Consensus 262 LEYL~aEILelAg~~A~~~~k~-rItP~hi~~AI~n-----------DeEL~~L~~~~tia~gGv~ 315 (331)
||.-+.+|.+.--.....+|.. .|+...|...+.. ++|+..++..+-.-+.|.|
T Consensus 6 le~~i~~l~~~F~~fd~~dgdgG~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D~d~DG~I 71 (98)
T 3n22_A 6 LEQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQV 71 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHCHHHHCSSCCHHHHHHHHHHHCTTSSSSB
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhCCCCCCCC
Confidence 5666667777655555344554 8999999988863 6788999876545455554
No 113
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=22.64 E-value=1.2e+02 Score=26.07 Aligned_cols=42 Identities=24% Similarity=0.254 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhHHhhcCCcccchHHHHHHhhCcHHHhhhhcC
Q psy7425 265 LAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG 306 (331)
Q Consensus 265 L~aEILelAg~~A~~~~k~rItP~hi~~AI~nDeEL~~L~~~ 306 (331)
.+.+|++--...-+..|.+-|+|.++..-|..|.|-..+|..
T Consensus 75 kV~dilrel~~~l~s~gvk~i~p~~l~~li~~d~~~~~~~a~ 116 (165)
T 2vxz_A 75 LVDGMIREVERLVTTNKLKFISPPRLHDLIIKDPQARKFFSS 116 (165)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCeeeCcHHHHHHHHhCHHHHHHHHH
Confidence 566666666666778899999999999999999999999975
No 114
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=22.18 E-value=50 Score=32.16 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=28.1
Q ss_pred HHHHHHHhhHHhhcCCcccchHHHHHHhhCcHH
Q psy7425 267 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 299 (331)
Q Consensus 267 aEILelAg~~A~~~~k~rItP~hi~~AI~nDeE 299 (331)
.++|+.|..+|...+...|.++||-+|+-.|++
T Consensus 85 ~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~ 117 (468)
T 3pxg_A 85 KKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (468)
T ss_dssp HHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCeecHHHHHHHHHhccc
Confidence 457888989998889999999999999986654
No 115
>1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA binding, high salt, solution structure, DNA binding protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP: a.49.1.1
Probab=21.29 E-value=30 Score=27.14 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhHHhhcCCcccchHHHHHHhh
Q psy7425 265 LAAEVLELAGNAARDNKKTRIIPRHLQLAIR 295 (331)
Q Consensus 265 L~aEILelAg~~A~~~~k~rItP~hi~~AI~ 295 (331)
.+...|.||...|..++.. |+..||..|-.
T Consensus 48 ~ltktLrLA~m~A~G~g~~-i~~~~I~~A~~ 77 (91)
T 1f6v_A 48 ILNHSLRLAAMTAHGKGER-VNEDYLRQAFR 77 (91)
T ss_dssp HHHHHHGGGTCTTCTTSCC-SSHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCCc-CCHHHHHHHHH
Confidence 3456678999999887776 99999999977
Done!