RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7425
(331 letters)
>gnl|CDD|185400 PTZ00018, PTZ00018, histone H3; Provisional.
Length = 136
Score = 215 bits (549), Expect = 1e-70
Identities = 113/119 (94%), Positives = 117/119 (98%)
Query: 45 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 104
MARTKQTARKSTGGKAPRKQLA+KAARKSAP TGG+KKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTE 60
Query: 105 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEA+EAYLVGLFEDTNLCAIHAKR T
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 119
Score = 59.9 bits (145), Expect = 3e-11
Identities = 31/35 (88%), Positives = 34/35 (97%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLA+KAARKSAP TGG+KKP
Sbjct: 5 KQTARKSTGGKAPRKQLASKAARKSAPVTGGIKKP 39
>gnl|CDD|185399 PTZ00017, PTZ00017, histone H2A; Provisional.
Length = 134
Score = 196 bits (501), Expect = 3e-63
Identities = 92/125 (73%), Positives = 105/125 (84%)
Query: 207 AQGGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLA 266
+G G G K K +RS++AGLQFPVGR+HR L+KG YA+RVGAGAPVYLAAV+EYL
Sbjct: 3 GKGKTGGGKAGKKKPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLT 62
Query: 267 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 326
AEVLELAGNAA+DNKK RI PRH+QLAIRNDEELNKLL+GVTIA GGVLPNI VLLPKK
Sbjct: 63 AEVLELAGNAAKDNKKKRITPRHIQLAIRNDEELNKLLAGVTIASGGVLPNIHKVLLPKK 122
Query: 327 TEKKA 331
++ K
Sbjct: 123 SKPKQ 127
>gnl|CDD|238029 cd00074, H2A, Histone 2A; H2A is a subunit of the nucleosome. The
nucleosome is an octamer containing two H2A, H2B, H3,
and H4 subunits. The H2A subunit performs essential
roles in maintaining structural integrity of the
nucleosome, chromatin condensation, and binding of
specific chromatin-associated proteins.
Length = 115
Score = 191 bits (487), Expect = 2e-61
Identities = 95/113 (84%), Positives = 102/113 (90%)
Query: 214 GGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELA 273
GGK K+K ++RS+RAGLQFPVGRIHR L+KG YAERVGAGAPVYLAAV+EYL AEVLELA
Sbjct: 3 GGKKKSKKRSRSARAGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELA 62
Query: 274 GNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 326
GNAARDNKK RI PRHLQLA+RNDEELNKLL GVTIA GGVLPNI VLLPKK
Sbjct: 63 GNAARDNKKKRITPRHLQLAVRNDEELNKLLKGVTIASGGVLPNIHKVLLPKK 115
>gnl|CDD|177733 PLN00121, PLN00121, histone H3; Provisional.
Length = 136
Score = 191 bits (486), Expect = 4e-61
Identities = 115/119 (96%), Positives = 118/119 (99%)
Query: 45 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 104
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTE 60
Query: 105 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LLIRKLPFQRLVREIAQDFKTDLRFQSSAV+ALQEA+EAYLVGLFEDTNLCAIHAKR T
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 119
Score = 57.4 bits (138), Expect = 3e-10
Identities = 34/35 (97%), Positives = 35/35 (100%)
Query: 161 RQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 195
+QTARKSTGGKAPRKQLATKAARKSAPATGGVKKP
Sbjct: 5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKP 39
>gnl|CDD|197711 smart00414, H2A, Histone 2A.
Length = 106
Score = 189 bits (482), Expect = 8e-61
Identities = 94/106 (88%), Positives = 98/106 (92%)
Query: 223 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK 282
+RS+RAGLQFPVGRIHRLLRKG YA+RVGAGAPVYLAAV+EYL AEVLELAGNAARDNKK
Sbjct: 1 SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKK 60
Query: 283 TRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 328
RI PRHLQLAIRNDEELNKLL GVTIAQGGVLPNI VLLPKKT
Sbjct: 61 RRITPRHLQLAIRNDEELNKLLKGVTIAQGGVLPNIHKVLLPKKTG 106
Score = 26.9 bits (60), Expect = 5.9
Identities = 13/16 (81%), Positives = 13/16 (81%)
Query: 195 PLLNKLLSGVTIAQGG 210
LNKLL GVTIAQGG
Sbjct: 76 EELNKLLKGVTIAQGG 91
>gnl|CDD|177758 PLN00157, PLN00157, histone H2A; Provisional.
Length = 132
Score = 190 bits (483), Expect = 9e-61
Identities = 91/122 (74%), Positives = 105/122 (86%)
Query: 210 GRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEV 269
G+ KGG K+ +RS++AGLQFPVGRI R L+ G YA RVGAGAPVYLAAV+EYLAAEV
Sbjct: 5 GKRKGGGGGKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEV 64
Query: 270 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 329
LELAGNAARDNKK+RI+PRH+QLA+RNDEEL+KLL GVTIA GGVLPNI +VLLPKK+ K
Sbjct: 65 LELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGGVTIAAGGVLPNIHSVLLPKKSGK 124
Query: 330 KA 331
Sbjct: 125 SK 126
>gnl|CDD|215080 PLN00156, PLN00156, histone H2AX; Provisional.
Length = 139
Score = 172 bits (438), Expect = 8e-54
Identities = 91/127 (71%), Positives = 101/127 (79%)
Query: 203 GVTIAQGGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVM 262
G G+G TKS +RSS+AGLQFPVGRI R L+ G YAERVGAGAPVYL+AV+
Sbjct: 1 GAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVL 60
Query: 263 EYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 322
EYLAAEVLELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLL VTIA GGVLPNI L
Sbjct: 61 EYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAAGGVLPNIHQTL 120
Query: 323 LPKKTEK 329
LPKK K
Sbjct: 121 LPKKVGK 127
>gnl|CDD|227587 COG5262, HTA1, Histone H2A [Chromatin structure and dynamics].
Length = 132
Score = 162 bits (412), Expect = 4e-50
Identities = 93/125 (74%), Positives = 105/125 (84%), Gaps = 2/125 (1%)
Query: 209 GGRGKGGKA--KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLA 266
GKGGKA S++RS++AGL FPVGR+ RLL+KGNY R+GAGAPVYLAAV+EYLA
Sbjct: 2 VSGGKGGKAADARVSQSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLA 61
Query: 267 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 326
AE+LELAGNAARDNKK RIIPRHLQLAIRNDEELNKLL VTIAQGGVLPNI LLPK
Sbjct: 62 AEILELAGNAARDNKKKRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNINPGLLPKS 121
Query: 327 TEKKA 331
++K +
Sbjct: 122 SKKGS 126
>gnl|CDD|165721 PLN00153, PLN00153, histone H2A; Provisional.
Length = 129
Score = 156 bits (396), Expect = 9e-48
Identities = 93/120 (77%), Positives = 104/120 (86%)
Query: 209 GGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAE 268
GRGKG + K+ +RS++AGLQFPVGRI R L+KG YAER+GAGAPVYLAAV+EYL AE
Sbjct: 2 AGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAE 61
Query: 269 VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 328
VLELAGNAARDNKK RI+PRH+QLAIRNDEEL KLL VTIA GGVLPNI AVLLPKKT+
Sbjct: 62 VLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTK 121
>gnl|CDD|128705 smart00428, H3, Histone H3.
Length = 105
Score = 149 bits (377), Expect = 4e-45
Identities = 72/88 (81%), Positives = 76/88 (86%), Gaps = 2/88 (2%)
Query: 78 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT--DLRFQSSAVM 135
GG K RYRPG VALREIR+YQKST+LLIRK PFQRLVREIAQ F T DLRFQSSA+M
Sbjct: 1 GGKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIM 60
Query: 136 ALQEASEAYLVGLFEDTNLCAIHAKRQT 163
ALQEA+EAYLVGLFEDTNL AIHAKR T
Sbjct: 61 ALQEAAEAYLVGLFEDTNLLAIHAKRVT 88
>gnl|CDD|177756 PLN00154, PLN00154, histone H2A; Provisional.
Length = 136
Score = 123 bits (311), Expect = 6e-35
Identities = 75/124 (60%), Positives = 88/124 (70%), Gaps = 2/124 (1%)
Query: 207 AQGGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYL 265
K K K K +RSSRAGLQFPVGRIHR L++ A RVGA A VY AA++EYL
Sbjct: 14 TTAAAAKKDKDKKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYL 73
Query: 266 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPK 325
AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K
Sbjct: 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 132
Query: 326 KTEK 329
T+K
Sbjct: 133 STKK 136
>gnl|CDD|215082 PLN00161, PLN00161, histone H3; Provisional.
Length = 135
Score = 116 bits (291), Expect = 4e-32
Identities = 69/120 (57%), Positives = 86/120 (71%), Gaps = 8/120 (6%)
Query: 45 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 104
MAR Q ++ GK P+K+ + ++ KKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1 MARRLQ-GKRFRKGKKPQKEASGVTRQELD------KKPHRYRPGTVALREIRKYQKSTE 53
Query: 105 LLIRKLPFQRLVREIAQDFKTD-LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LLIRKLPF RLVREI+ + + R+ + A++ALQEA+E +LV LFED NLCAIHAKR T
Sbjct: 54 LLIRKLPFARLVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVT 113
>gnl|CDD|165727 PLN00160, PLN00160, histone H3; Provisional.
Length = 97
Score = 99.0 bits (246), Expect = 5e-26
Identities = 52/78 (66%), Positives = 64/78 (82%), Gaps = 1/78 (1%)
Query: 87 RPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDLRFQSSAVMALQEASEAYL 145
RPG AL+EI+ YQKST+LLIR+LPF RLVREI + + R+Q SA++ALQEA+EA+L
Sbjct: 2 RPGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHL 61
Query: 146 VGLFEDTNLCAIHAKRQT 163
VGLFED+NLCAIH KR T
Sbjct: 62 VGLFEDSNLCAIHGKRVT 79
>gnl|CDD|240330 PTZ00252, PTZ00252, histone H2A; Provisional.
Length = 134
Score = 93.5 bits (232), Expect = 2e-23
Identities = 56/117 (47%), Positives = 77/117 (65%), Gaps = 2/117 (1%)
Query: 216 KAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGN 275
KA RS++AGL FPVGR+ LLR+G YA R+GA VY+AAV+EYL AE+LEL+
Sbjct: 10 KASKSGSGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVK 69
Query: 276 AARDN--KKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEKK 330
AA K R+ PR + LA+R+D++L LL VT+++GGV+P++ L K K
Sbjct: 70 AAAQQAKKPKRLTPRTVTLAVRHDDDLGSLLKNVTLSRGGVMPSLNKALAKKHKSGK 126
>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4.
Length = 75
Score = 87.2 bits (217), Expect = 7e-22
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 224 RSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK 282
S L+ P R+ R L++G YAE R+ + APV L +E L E+LE AG AR K+
Sbjct: 1 SSRLLILKLPFSRVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKR 60
Query: 283 TRIIPRHLQLAIRND 297
I PR +QLA+R D
Sbjct: 61 KTITPRDIQLAVRLD 75
Score = 83.8 bits (208), Expect = 1e-20
Identities = 33/62 (53%), Positives = 41/62 (66%)
Query: 102 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 161
S+ LLI KLPF R+VRE+ + F +LR S A +ALQEA E L + ED L A HAKR
Sbjct: 1 SSRLLILKLPFSRVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKR 60
Query: 162 QT 163
+T
Sbjct: 61 KT 62
>gnl|CDD|224947 COG2036, HHT1, Histones H3 and H4 [Chromatin structure and
dynamics].
Length = 91
Score = 84.3 bits (209), Expect = 1e-20
Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Query: 88 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 147
PG V L+EIRRYQ+ST+LL+ K P +R++R+ + R SSA+ LQEA E YL
Sbjct: 1 PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-----RVSSSAIEELQEALEEYLEE 55
Query: 148 LFEDTNLCAIHAKRQT 163
+ ED A HAKR+T
Sbjct: 56 IAEDAVELAEHAKRKT 71
>gnl|CDD|165723 PLN00155, PLN00155, histone H2A; Provisional.
Length = 58
Score = 67.0 bits (163), Expect = 1e-14
Identities = 40/57 (70%), Positives = 48/57 (84%)
Query: 209 GGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL 265
GRGKG + K+ +RS++AGLQFPVGRI R L+KG YAER+GAGAPVYLAAV+EYL
Sbjct: 2 AGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58
>gnl|CDD|227572 COG5247, BUR6, Class 2 transcription repressor NC2, alpha subunit
(DRAP1 homolog) [Transcription].
Length = 113
Score = 39.6 bits (92), Expect = 3e-04
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 290
+FP+ R+ ++++ +VG PV + +E E++ L+ AR R+ L
Sbjct: 23 RFPIARLKKIMQLDEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFL 82
Query: 291 QLAIRNDEELNKLLSGVTIAQG 312
+ A +DE+ + L +
Sbjct: 83 KRATESDEKFDFLKNMEQFKNR 104
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 41.5 bits (97), Expect = 5e-04
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 2 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHPSSSMARTKQTARKSTGGKAP 61
++T R+S A + K K APA K + A K A+K KAP
Sbjct: 972 EAVRKTVRRSVKKAAATRAAMKKKVAKKAPA-----KKAAAKKAAAKKAAAKKKVAKKAP 1026
Query: 62 RKQLATKAARKSAPATGGVKKPHR 85
K++A K A K A K R
Sbjct: 1027 AKKVARKPAAKKAAKKPARKAAGR 1050
Score = 38.0 bits (88), Expect = 0.007
Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 9 RKSTGGKAPRKQLATKAARKSAPATGGVKKPHPSSSMARTKQTARKSTGGKAPRKQLATK 68
++ R KAA A V K P+ A K A+K+ K K+ K
Sbjct: 971 AEAVRKTVRR--SVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAK 1028
Query: 69 AARKSAPATGGVKKPHRYRPG 89
+ A KKP R G
Sbjct: 1029 KVARKPAAKKAAKKPARKAAG 1049
Score = 32.3 bits (73), Expect = 0.45
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 5 KQTARKSTGGK-APRKQLATKAARKSAPATGGVKKPHPSSSMARTKQTARKSTGGKAPRK 63
K A ++ K +K A KAA K A A K + K+ ARK KA +K
Sbjct: 984 KAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAP-AKKVARKPAAKKAAKK 1042
Query: 64 QLATKAARK 72
A RK
Sbjct: 1043 PARKAAGRK 1051
Score = 31.1 bits (70), Expect = 0.86
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 159 AKRQTARKSTGGKAPRKQLATKAARKSAPATGGVKK 194
AK+ A+K KAP K++A K A K A K
Sbjct: 1012 AKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKA 1047
Score = 28.8 bits (64), Expect = 4.8
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 159 AKRQTARKSTGGKAPRKQLATK-AARKSAPATGGVKKPLLNK 199
AK+ A+K+ KA K+ A K K APA +KP K
Sbjct: 997 AKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKK 1038
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
Length = 566
Score = 37.4 bits (86), Expect = 0.009
Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 2/89 (2%)
Query: 4 TKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHPSSSMARTKQTARKSTGGKAPRK 63
T +K AP + + AP + +KP + A T + K AP +
Sbjct: 33 TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLA--QAPTPAASEKFDPAPAPHQ 90
Query: 64 QLATKAARKSAPATGGVKKPHRYRPGTVA 92
+ AP KP T A
Sbjct: 91 AASRAPDPAVAPQLAAAPKPDAAEAFTSA 119
Score = 30.9 bits (69), Expect = 0.95
Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 2 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHPSSSMARTKQTARKSTGGKAP 61
A + +R AP + K AP +K P + A + +R AP
Sbjct: 45 APHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDP--APAPHQAASRAPDPAVAP 102
Query: 62 RKQLATKAARKSAPATGGVKKPHRYRPGTVA 92
+ A K A + GT A
Sbjct: 103 QLAAAPKPDAAEAFTSAAQAHEAPADAGTSA 133
Score = 28.2 bits (62), Expect = 7.3
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 2 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHPSSSMARTKQTARKSTGGKAP 61
A T + K AP + + AP KP + A T A
Sbjct: 73 APTPAASEKFDPAPAPHQAASRAPDPAVAPQLAAAPKPDA--AEAFTSAAQAHEAPADAG 130
Query: 62 RKQLATKAARKSAPA 76
+ A++K PA
Sbjct: 131 ----TSAASKKPDPA 141
>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional.
Length = 987
Score = 36.9 bits (85), Expect = 0.015
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 17 PRKQLATKAARKSAPATGGVKKPHPSSSMARTKQTARKSTGGKAPRKQLATKAARKSAPA 76
PRK A KA SA G V ++ K A+K A K A +K+AP
Sbjct: 856 PRKTAAAKAGAASAAFGGTVAV---KAAKPAKKAAAKKVAAKTAAAKTPRKAAKKKAAPP 912
Query: 77 TGGVK 81
G+K
Sbjct: 913 AAGLK 917
Score = 29.2 bits (65), Expect = 3.8
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 2 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHPSSSMA 46
K A+K A K A +K+AP G+K PS+++A
Sbjct: 882 PAKKAAAKKVAAKTAAAKTPRKAAKKKAAPPAAGLK---PSAALA 923
Score = 28.0 bits (62), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 159 AKRQTARKSTGGKAPRKQLATKAARKSAPATGGVK 193
AK+ A+K A K A +K+AP G+K
Sbjct: 883 AKKAAAKKVAAKTAAAKTPRKAAKKKAAPPAAGLK 917
>gnl|CDD|201453 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor
(CBF/NF-Y) and archaeal histone. This family includes
archaebacterial histones and histone like transcription
factors from eukaryotes.
Length = 65
Score = 33.4 bits (77), Expect = 0.016
Identities = 14/63 (22%), Positives = 28/63 (44%)
Query: 232 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQ 291
P+ R+ R+++ A R+ A +A +E + A + K+ I H++
Sbjct: 3 LPIARVKRIMKSDPDAGRISQDAKELIAECVEEFIEFIASEAAEICKKEKRKTINAEHIK 62
Query: 292 LAI 294
LA+
Sbjct: 63 LAV 65
>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members
of this family are necessary for accurate chromosome
transmission during cell division.
Length = 804
Score = 33.2 bits (76), Expect = 0.18
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 11 STGGKAPRKQLATKAARKSAPATGGVKKPHPSSSMARTKQTAR 53
KAPR+QL K R KK S + T +
Sbjct: 467 FGNVKAPRQQLNIK--RPEESEESEGKKQSSSVGIRDKSGTKK 507
>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed.
Length = 327
Score = 31.6 bits (72), Expect = 0.59
Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 4/67 (5%)
Query: 11 STGGKAPRKQLATKAARKSAPATGGVKKPHPSSSMARTKQTARKSTGGKAPRKQLATKAA 70
+ A A P+ + +T A P+ A+ A
Sbjct: 182 APSKGAKVPATAETHPTPPQKPA----TKKPAVNHHKTATVAVPPATSGKPKSGAASARA 237
Query: 71 RKSAPAT 77
SAPA+
Sbjct: 238 LSSAPAS 244
>gnl|CDD|241015 cd12571, RRM6_RBM19, RNA recognition motif 6 in RNA-binding protein
19 (RBM19) and similar proteins. This subgroup
corresponds to the RRM6 of RBM19, also termed
RNA-binding domain-1 (RBD-1), which is a nucleolar
protein conserved in eukaryotes. It is involved in
ribosome biogenesis by processing rRNA. In addition, it
is essential for preimplantation development. RBM19 has
a unique domain organization containing 6 conserved RNA
recognition motifs (RRMs), also termed RBDs (RNA binding
domains) or RNPs (ribonucleoprotein domains). .
Length = 79
Score = 28.5 bits (64), Expect = 1.0
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 103 TELLIRKLPFQRLVREIAQDFKT 125
+++L+R +PF+ V+E+ + F T
Sbjct: 1 SKILVRNIPFEATVKELRELFST 23
>gnl|CDD|178307 PLN02705, PLN02705, beta-amylase.
Length = 681
Score = 30.7 bits (69), Expect = 1.2
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 173 PRKQLATKAARKSAPATGGVKKPLLNKLLSGVTIAQGGRGKGGKAKTKSKTR 224
PR AT AA AP V + SG GG+GK + K K +T+
Sbjct: 41 PRGFAATAAAAAIAPTENDVNNG---NISSGGGGGGGGKGKREREKEKERTK 89
>gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF;
Reviewed.
Length = 470
Score = 30.3 bits (69), Expect = 1.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 104 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEA 143
E LI K+ F R+ ++A+ K R+Q AV+AL A
Sbjct: 368 EPLIGKVRFSRIGIKLAETHKKGYRWQHEAVIALASPDNA 407
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 29.9 bits (68), Expect = 2.7
Identities = 17/84 (20%), Positives = 21/84 (25%), Gaps = 4/84 (4%)
Query: 11 STGGKAPRKQLATKAARKSAPATGGVKKPHPSSSMARTKQTARKSTGGKAPRKQLATKAA 70
+ A A +A +APA P P+ A K A A A
Sbjct: 42 AAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAA----AAAPA 97
Query: 71 RKSAPATGGVKKPHRYRPGTVALR 94
A A LR
Sbjct: 98 APPAAAAAAAPAAAAVEDEVTPLR 121
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 29.1 bits (65), Expect = 2.9
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHPSSSMARTKQTARKSTGGKAPRKQ 64
K+ ++K A + A K A K+A K + K+ A+K+ KA K
Sbjct: 224 KKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAA--KAAAKA 281
Query: 65 LATKAARKSAPATGGVKKPHRYRPGTVA 92
A A K + G+ A
Sbjct: 282 AKGAAKATKGKAKAKKKAGKKAAAGSKA 309
Score = 28.7 bits (64), Expect = 4.0
Identities = 19/82 (23%), Positives = 32/82 (39%)
Query: 2 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHPSSSMARTKQTARKSTGGKAP 61
A + S K+ K+++ K A K+A + K ++ K +
Sbjct: 207 AAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKA 266
Query: 62 RKQLATKAARKSAPATGGVKKP 83
K+ A KAA+ +A A G K
Sbjct: 267 VKKAAKKAAKAAAKAAKGAAKA 288
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 28.6 bits (64), Expect = 5.3
Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 1/120 (0%)
Query: 7 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHPSSSMARTKQTARKSTGGKAPRKQLA 66
A G K K + T+ A P+ P PS S A + +A +S A
Sbjct: 368 DASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 67 TKAARKSAPATGGVKKPHRYRPGTV-ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT 125
+ + P P RP ++I + S+ P Q + + K
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKE 487
>gnl|CDD|237406 PRK13515, PRK13515, carboxylate-amine ligase; Provisional.
Length = 371
Score = 28.4 bits (64), Expect = 6.4
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 234 VGRIHRLLRKGNYAER---VGAGAPVYLAAVMEYLAAEVLE 271
V +L +G A+R V A L AV+++L E LE
Sbjct: 326 VEYARTILEEGTSADRQLRVYAETGGALRAVVDWLIEETLE 366
>gnl|CDD|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase.
Length = 545
Score = 27.9 bits (62), Expect = 8.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 125 TDLRFQSSAVMALQEASEAYLVGLFEDTNL 154
T L + ++AL EA + Y+V + ED +L
Sbjct: 178 TALIYHHGKLLALSEADKPYVVKVLEDGDL 207
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.128 0.348
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,351,929
Number of extensions: 1569170
Number of successful extensions: 1429
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1306
Number of HSP's successfully gapped: 131
Length of query: 331
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 234
Effective length of database: 6,635,264
Effective search space: 1552651776
Effective search space used: 1552651776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.6 bits)