RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7425
(331 letters)
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 106
Score = 183 bits (465), Expect = 6e-59
Identities = 98/106 (92%), Positives = 103/106 (97%)
Query: 220 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD 279
K+K+RSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARD
Sbjct: 1 KAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARD 60
Query: 280 NKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPK 325
NKKTRIIPRHLQLAIRNDEELNKLL VTIAQGGVLPNIQAVLLPK
Sbjct: 61 NKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPK 106
Score = 29.4 bits (66), Expect = 0.22
Identities = 12/14 (85%), Positives = 12/14 (85%)
Query: 197 LNKLLSGVTIAQGG 210
LNKLL VTIAQGG
Sbjct: 81 LNKLLGKVTIAQGG 94
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 179 bits (457), Expect = 1e-57
Identities = 69/105 (65%), Positives = 85/105 (80%)
Query: 222 KTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK 281
+RS++AG+ FPVGR+ R ++KG+ R+G GAPVY+AAV+EYL AE+LELA NAARDNK
Sbjct: 2 TSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNK 61
Query: 282 KTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKK 326
K R+ PRH+ LA+ NDEELN+LL GVTIA GGVLPNI LL KK
Sbjct: 62 KGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKK 106
Score = 29.0 bits (65), Expect = 0.31
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 197 LNKLLSGVTIAQGG 210
LN+LL GVTIA GG
Sbjct: 80 LNQLLKGVTIASGG 93
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant
H2A.Z [TaxId: 9606]}
Length = 103
Score = 158 bits (401), Expect = 2e-49
Identities = 65/104 (62%), Positives = 78/104 (75%), Gaps = 2/104 (1%)
Query: 221 SKTRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARD 279
+ +RS RAGLQFPVGRIHR L+ + RVGA A VY AA++EYL AEVLELAGNA++D
Sbjct: 1 AVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD 60
Query: 280 NKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLL 323
K RI PRHLQLAIR DEEL+ L+ TIA GGV+P+I L+
Sbjct: 61 LKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLI 103
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),
erythrocytes [TaxId: 9031]}
Length = 95
Score = 142 bits (360), Expect = 2e-43
Identities = 77/78 (98%), Positives = 77/78 (98%)
Query: 86 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 145
YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL
Sbjct: 1 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 60
Query: 146 VGLFEDTNLCAIHAKRQT 163
VGLFEDTNLCAIHAKR T
Sbjct: 61 VGLFEDTNLCAIHAKRVT 78
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 141 bits (356), Expect = 9e-42
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 210 GRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEV 269
+ A++ + R R L PV +IH LL++ ++ VY+ AV+EY++A++
Sbjct: 78 DKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEV-LGYKIDHQVSVYIVAVLEYISADI 136
Query: 270 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 304
L+LAGN R+ + I + +++A+ D+ L +
Sbjct: 137 LKLAGNYVRNIRHYEITKQDIKVAMCADKVLMDMF 171
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 80.2 bits (198), Expect = 5e-20
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 290
+FP RI ++++ +V A PV ++ +E +L+ A + + HL
Sbjct: 2 RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 61
Query: 291 QLAI 294
+ I
Sbjct: 62 KQCI 65
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma
(Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 77.2 bits (190), Expect = 1e-18
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 233 PVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 292
P+ RI ++++ + + A APV A + E+ A DNK+ + + +
Sbjct: 2 PLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAM 61
Query: 293 AIRNDEELNKLLSGV 307
AI ++ + L+ V
Sbjct: 62 AITKFDQFDFLIDIV 76
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 151
Score = 61.0 bits (148), Expect = 4e-12
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 221 SKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 280
+ G F + R+L++ ER + A ++ E+ E A A ++
Sbjct: 69 VEGVEDYDGELFGRATVRRILKRAG-IERASSDAVDLYNKLICRATEELGEKAAEYADED 127
Query: 281 KKTRIIPRHLQLAIRN 296
+ + ++ AI
Sbjct: 128 GRKTVQGEDVEKAITY 143
Score = 53.3 bits (128), Expect = 2e-09
Identities = 13/65 (20%), Positives = 25/65 (38%)
Query: 231 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 290
+ P I R+ R+G R+ A + + +A V A + + K ++ HL
Sbjct: 1 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHL 60
Query: 291 QLAIR 295
+
Sbjct: 61 KALAD 65
Score = 39.8 bits (93), Expect = 1e-04
Identities = 11/80 (13%), Positives = 22/80 (27%), Gaps = 5/80 (6%)
Query: 84 HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEA 143
+ + + + L + +R+++ R S AV +
Sbjct: 57 EEHLKALADVLMVEGVEDYDGELFGRATVRRILKR-----AGIERASSDAVDLYNKLICR 111
Query: 144 YLVGLFEDTNLCAIHAKRQT 163
L E A R+T
Sbjct: 112 ATEELGEKAAEYADEDGRKT 131
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus
horikoshii) [TaxId: 53953]}
Length = 66
Score = 30.9 bits (70), Expect = 0.030
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 110 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
LP + R I + R A L E E Y + + + A HA R+T
Sbjct: 3 LPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKT 54
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta
(Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 30.6 bits (69), Expect = 0.057
Identities = 7/73 (9%), Positives = 23/73 (31%), Gaps = 1/73 (1%)
Query: 230 LQFPVGRIHRLLRKG-NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 288
+ P+ + R+++ ++ A + + + + A K+ I
Sbjct: 1 IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGE 60
Query: 289 HLQLAIRNDEELN 301
+ A+ +
Sbjct: 61 DILFAMSTLGFDS 73
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM,
C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 75
Score = 28.5 bits (64), Expect = 0.20
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 260 AVMEYLAAEVLELAGNAARDNKKTRIIP 287
++E A +V+ + A + + R++P
Sbjct: 24 HLLETGANDVMVVKPCAGSLDDRERLLP 51
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus
fervidus, histone A [TaxId: 2180]}
Length = 68
Score = 28.2 bits (63), Expect = 0.28
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 128 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
R A +AL + E + + A HA R+T
Sbjct: 20 RVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKT 55
>d1khya_ a.174.1.1 (A:) N-terminal domain of ClpB (heat shock
protein F84.1) {Escherichia coli [TaxId: 562]}
Length = 139
Score = 26.6 bits (58), Expect = 2.3
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 266 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 299
L A + A + I P HL A+ N E
Sbjct: 7 FQLALADAQSLALGHDNQFIEPLHLMSALLNQEG 40
>d1d1na_ b.43.3.1 (A:) Initiation factor IF2/eIF5b, domains 2 and 4
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 99
Score = 25.5 bits (56), Expect = 3.5
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 205 TIAQGGRGKGGKAKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAG 253
TIA G GK SK R R G+ G I L R + V G
Sbjct: 22 TIA-GCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQG 69
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 82
Score = 24.3 bits (53), Expect = 7.3
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 128 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRQT 163
R + + +L + D HAKR+T
Sbjct: 26 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.128 0.348
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,064,539
Number of extensions: 47372
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 22
Length of query: 331
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,226,816
Effective search space: 300569920
Effective search space used: 300569920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.3 bits)