BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7427
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein
pdb|1EQZ|C Chain C, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|G Chain G, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|C Chain C, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|G Chain G, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|C Chain C, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|G Chain G, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|C Chain C, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|G Chain G, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2F8N|A Chain A, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|2F8N|E Chain E, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 136
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR
Sbjct: 71 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 117
>pdb|2IO5|B Chain B, Crystal Structure Of The Cia- Histone H3-H4 Complex
pdb|2NQB|A Chain A, Drosophila Nucleosome Structure
pdb|2NQB|E Chain E, Drosophila Nucleosome Structure
pdb|2PYO|A Chain A, Drosophila Nucleosome Core
pdb|2PYO|E Chain E, Drosophila Nucleosome Core
pdb|3C9K|C Chain C, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|G Chain G, Model Of Histone Octamer Tubular Crystals
Length = 135
Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR
Sbjct: 70 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 116
>pdb|3AV1|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.2
Length = 139
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR
Sbjct: 74 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 120
>pdb|1HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 93
Score = 100 bits (248), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/47 (100%), Positives = 47/47 (100%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR
Sbjct: 28 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 74
>pdb|2CV5|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
pdb|1U35|A Chain A, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|E Chain E, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
Length = 136
Score = 99.8 bits (247), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 56/76 (73%), Gaps = 3/76 (3%)
Query: 40 YKAGTGPERDASHRWVQTHRVTQVLS---LVREIAQDFKTDLRFQSSAVMALQEASEAYL 96
Y+ GT R+ T + + L LVREIAQDFKTDLRFQSSAVMALQEA EAYL
Sbjct: 42 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYL 101
Query: 97 VGLFEDTNLCAIHAKR 112
VGLFEDTNLCAIHAKR
Sbjct: 102 VGLFEDTNLCAIHAKR 117
>pdb|3AFA|A Chain A, The Human Nucleosome Structure
pdb|3AFA|E Chain E, The Human Nucleosome Structure
pdb|3AZI|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 139
Score = 99.4 bits (246), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 46/47 (97%), Positives = 46/47 (97%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKR
Sbjct: 74 LVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKR 120
>pdb|3AZH|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
Length = 139
Score = 99.4 bits (246), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 46/47 (97%), Positives = 46/47 (97%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKR
Sbjct: 74 LVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKR 120
>pdb|3AZE|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
Length = 139
Score = 99.4 bits (246), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 46/47 (97%), Positives = 46/47 (97%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKR
Sbjct: 74 LVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKR 120
>pdb|3AYW|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
Length = 139
Score = 99.4 bits (246), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 46/47 (97%), Positives = 46/47 (97%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKR
Sbjct: 74 LVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKR 120
>pdb|1F66|A Chain A, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|E Chain E, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 136
Score = 99.4 bits (246), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 56/76 (73%), Gaps = 3/76 (3%)
Query: 40 YKAGTGPERDASHRWVQTHRVTQVLS---LVREIAQDFKTDLRFQSSAVMALQEASEAYL 96
Y+ GT R+ T + + L LVREIAQDFKTDLRFQSSAVMALQEASEAYL
Sbjct: 42 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 101
Query: 97 VGLFEDTNLCAIHAKR 112
V LFEDTNLCAIHAKR
Sbjct: 102 VALFEDTNLCAIHAKR 117
>pdb|1P3B|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 99.4 bits (246), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/47 (97%), Positives = 46/47 (97%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 70 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKR 116
>pdb|1P3K|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 99.4 bits (246), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 56/76 (73%), Gaps = 3/76 (3%)
Query: 40 YKAGTGPERDASHRWVQTHRVTQVLS---LVREIAQDFKTDLRFQSSAVMALQEASEAYL 96
Y+ GT R+ T + + L LVREIAQDFKTDLRFQSSAVMALQEASEAYL
Sbjct: 41 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 100
Query: 97 VGLFEDTNLCAIHAKR 112
V LFEDTNLCAIHAKR
Sbjct: 101 VALFEDTNLCAIHAKR 116
>pdb|1P3M|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 99.4 bits (246), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 56/76 (73%), Gaps = 3/76 (3%)
Query: 40 YKAGTGPERDASHRWVQTHRVTQVLS---LVREIAQDFKTDLRFQSSAVMALQEASEAYL 96
Y+ GT R+ T + + L LVREIAQDFKTDLRFQSSAVMALQEASEAYL
Sbjct: 41 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 100
Query: 97 VGLFEDTNLCAIHAKR 112
V LFEDTNLCAIHAKR
Sbjct: 101 VALFEDTNLCAIHAKR 116
>pdb|3LEL|A Chain A, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|E Chain E, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|K Chain K, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|O Chain O, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
Length = 136
Score = 99.4 bits (246), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 56/76 (73%), Gaps = 3/76 (3%)
Query: 40 YKAGTGPERDASHRWVQTHRVTQVLS---LVREIAQDFKTDLRFQSSAVMALQEASEAYL 96
Y+ GT R+ T + + L LVREIAQDFKTDLRFQSSAVMALQEASEAYL
Sbjct: 42 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 101
Query: 97 VGLFEDTNLCAIHAKR 112
V LFEDTNLCAIHAKR
Sbjct: 102 VALFEDTNLCAIHAKR 117
>pdb|1KX3|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|A Chain A, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|E Chain E, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1S32|A Chain A, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|E Chain E, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1ZBB|A Chain A, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|E Chain E, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|AA Chain a, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|EE Chain e, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|A Chain A, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|E Chain E, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2NZD|A Chain A, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|E Chain E, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|A Chain A, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|E Chain E, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|A Chain A, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|E Chain E, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3C1B|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3KUY|A Chain A, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|E Chain E, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3LJA|A Chain A, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|E Chain E, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3MGP|A Chain A, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|E Chain E, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|A Chain A, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|E Chain E, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|A Chain A, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|E Chain E, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|A Chain A, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|E Chain E, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MVD|A Chain A, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|E Chain E, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3LZ0|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3O62|A Chain A, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|E Chain E, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3MNN|A Chain A, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|E Chain E, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3TU4|A Chain A, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|E Chain E, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|A Chain A, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|E Chain E, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|A Chain A, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|E Chain E, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|A Chain A, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|E Chain E, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|A Chain A, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|E Chain E, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|A Chain A, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|E Chain E, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 135
Score = 99.4 bits (246), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/47 (97%), Positives = 46/47 (97%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 70 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKR 116
>pdb|1P3L|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 99.0 bits (245), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 46/47 (97%), Positives = 46/47 (97%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 70 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKR 116
>pdb|3KXB|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
Length = 135
Score = 99.0 bits (245), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 46/47 (97%), Positives = 46/47 (97%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 70 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKR 116
>pdb|1M18|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
Length = 135
Score = 99.0 bits (245), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 56/76 (73%), Gaps = 3/76 (3%)
Query: 40 YKAGTGPERDASHRWVQTHRVTQVLS---LVREIAQDFKTDLRFQSSAVMALQEASEAYL 96
Y+ GT R+ T + + L LVREIAQDFKTDLRFQSSAVMALQEASEAYL
Sbjct: 41 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 100
Query: 97 VGLFEDTNLCAIHAKR 112
V LFEDTNLCAIHAKR
Sbjct: 101 VALFEDTNLCAIHAKR 116
>pdb|1ZLA|A Chain A, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|E Chain E, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 135
Score = 99.0 bits (245), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 46/47 (97%), Positives = 46/47 (97%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 70 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKR 116
>pdb|1AOI|A Chain A, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|E Chain E, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 116
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 56/76 (73%), Gaps = 3/76 (3%)
Query: 40 YKAGTGPERDASHRWVQTHRVTQVLS---LVREIAQDFKTDLRFQSSAVMALQEASEAYL 96
Y+ GT R+ T + + L LVREIAQDFKTDLRFQSSAVMALQEASEAYL
Sbjct: 22 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 81
Query: 97 VGLFEDTNLCAIHAKR 112
V LFEDTNLCAIHAKR
Sbjct: 82 VALFEDTNLCAIHAKR 97
>pdb|3KWQ|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 98
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 56/76 (73%), Gaps = 3/76 (3%)
Query: 40 YKAGTGPERDASHRWVQTHRVTQVLS---LVREIAQDFKTDLRFQSSAVMALQEASEAYL 96
Y+ GT R+ T + + L LVREIAQDFKTDLRFQSSAVMALQEASEAYL
Sbjct: 4 YRPGTVALREIRRYQESTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 63
Query: 97 VGLFEDTNLCAIHAKR 112
V LFEDTNLCAIHAKR
Sbjct: 64 VALFEDTNLCAIHAKR 79
>pdb|3AZG|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
Length = 139
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/47 (95%), Positives = 46/47 (97%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHA+R
Sbjct: 74 LVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAQR 120
>pdb|3AZF|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
Length = 139
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/47 (95%), Positives = 46/47 (97%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDF+TDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKR
Sbjct: 74 LVREIAQDFQTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKR 120
>pdb|2HUE|B Chain B, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones H3
And H4
Length = 77
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/47 (97%), Positives = 46/47 (97%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 12 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKR 58
>pdb|1P34|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/46 (97%), Positives = 45/46 (97%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK 111
LVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAK
Sbjct: 70 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAK 115
>pdb|4EO5|B Chain B, Yeast Asf1 Bound To H3H4G94P MUTANT
Length = 76
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/47 (97%), Positives = 46/47 (97%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 11 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKR 57
>pdb|1P3A|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/46 (97%), Positives = 45/46 (97%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK 111
LVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAK
Sbjct: 70 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAK 115
>pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In
Complex With Its Chaperone Daxx
Length = 136
Score = 96.7 bits (239), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/47 (93%), Positives = 46/47 (97%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKR
Sbjct: 71 LVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKR 117
>pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.3
Length = 139
Score = 96.7 bits (239), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/47 (93%), Positives = 46/47 (97%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKR
Sbjct: 74 LVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKR 120
>pdb|3A6N|A Chain A, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|E Chain E, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
Length = 139
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 55/76 (72%), Gaps = 3/76 (3%)
Query: 40 YKAGTGPERDASHRWVQTHRVTQVLS---LVREIAQDFKTDLRFQSSAVMALQEASEAYL 96
Y+ GT R+ T + + L L+REIAQDFKTDLRFQSSAVMALQEA E+YL
Sbjct: 45 YRPGTVALREIRRYQKSTELLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYL 104
Query: 97 VGLFEDTNLCAIHAKR 112
VGLFEDTNLC IHAKR
Sbjct: 105 VGLFEDTNLCVIHAKR 120
>pdb|3C1C|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 135
Score = 93.6 bits (231), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/47 (93%), Positives = 44/47 (93%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDF TDLRFQSSAVMALQEASEAYLV LFEDTNL AIHAKR
Sbjct: 70 LVREIAQDFXTDLRFQSSAVMALQEASEAYLVALFEDTNLAAIHAKR 116
>pdb|4H9O|A Chain A, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4
Length = 135
Score = 93.2 bits (230), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 55/76 (72%), Gaps = 3/76 (3%)
Query: 40 YKAGTGPERDASHRWVQTHRVTQVLS---LVREIAQDFKTDLRFQSSAVMALQEASEAYL 96
Y+ GT R+ T + + L LVREIAQDFKTDLRFQS+A+MALQEA+EA+L
Sbjct: 41 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIMALQEAAEAFL 100
Query: 97 VGLFEDTNLCAIHAKR 112
V LFEDTNLC IHAKR
Sbjct: 101 VALFEDTNLCTIHAKR 116
>pdb|4H9N|A Chain A, Complex Structure 1 Of DaxxH3.3(SUB5)H4
pdb|4H9Q|A Chain A, Complex Structure 4 Of Daxx(E225a)H3.3(SUB5)H4
Length = 135
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/47 (85%), Positives = 44/47 (93%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQS+A+ ALQEA+EA+LV LFEDTNLC IHAKR
Sbjct: 70 LVREIAQDFKTDLRFQSAAIGALQEAAEAFLVALFEDTNLCTIHAKR 116
>pdb|1ID3|A Chain A, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|E Chain E, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 135
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Query: 40 YKAGTGPERDASHRWVQTHRVTQVLS---LVREIAQDFKTDLRFQSSAVMALQEASEAYL 96
YK GT R+ T + + L LVREIAQDFKTDLRFQSSA+ ALQE+ EAYL
Sbjct: 41 YKPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYL 100
Query: 97 VGLFEDTNLCAIHAKR 112
V LFEDTNL AIHAKR
Sbjct: 101 VSLFEDTNLAAIHAKR 116
>pdb|4H9S|A Chain A, Complex Structure 6 Of DaxxH3.3(SUB7)H4
pdb|4H9S|B Chain B, Complex Structure 6 Of DaxxH3.3(SUB7)H4
Length = 135
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/47 (80%), Positives = 43/47 (91%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREI QDFKTDLR+QS+A+ ALQEA+EA+LV LFEDTNLC IHAKR
Sbjct: 70 LVREICQDFKTDLRWQSAAIGALQEAAEAFLVALFEDTNLCTIHAKR 116
>pdb|4H9P|A Chain A, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4
pdb|4H9R|A Chain A, Complex Structure 5 Of Daxx(E225a)H3.3(SUB5,G90A)H4
Length = 135
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 54/76 (71%), Gaps = 3/76 (3%)
Query: 40 YKAGTGPERDASHRWVQTHRVTQVLS---LVREIAQDFKTDLRFQSSAVMALQEASEAYL 96
Y+ GT R+ T + + L LVREIAQDFKTDLRFQS+A+ ALQEA+EA+L
Sbjct: 41 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAFL 100
Query: 97 VGLFEDTNLCAIHAKR 112
V LFEDTNLC IHAKR
Sbjct: 101 VALFEDTNLCTIHAKR 116
>pdb|2L5A|A Chain A, Structural Basis For Recognition Of Centromere Specific
Histone H3 Variant By Nonhistone Scm3
Length = 235
Score = 69.3 bits (168), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 40/50 (80%), Gaps = 3/50 (6%)
Query: 66 LVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LV+E+ +F T DLR+QS A+MALQEASEAYLVGL E TNL A+HAKR
Sbjct: 20 LVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKR 69
>pdb|2YFV|A Chain A, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3,
Cse4 And H4
Length = 100
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 39/50 (78%), Gaps = 3/50 (6%)
Query: 66 LVREIAQDFKTD---LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LV+E+ F T+ LR+QS A+MALQEASEAYLVGL E TNL A+HAKR
Sbjct: 36 LVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKR 85
>pdb|2YFW|A Chain A, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|C Chain C, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|E Chain E, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|G Chain G, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
Length = 92
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 39/50 (78%), Gaps = 3/50 (6%)
Query: 66 LVREIAQDFKTD---LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LV+E+ F T+ LR+QS A+MALQEASEAYLVGL E TNL A+HAKR
Sbjct: 24 LVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKR 73
>pdb|2LY8|A Chain A, The Budding Yeast Chaperone Scm3 Recognizes The Partially
Unfolded Dimer Of The Centromere-specific Cse4/h4
Histone Variant
Length = 121
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 37/47 (78%), Gaps = 3/47 (6%)
Query: 66 LVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIH 109
LV+E+ +F T DLR+QS A+MALQEASEAYLVGL E TNL A+H
Sbjct: 10 LVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALH 56
>pdb|3AN2|A Chain A, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|E Chain E, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
Length = 143
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 66 LVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
L REI F D +Q+ A++ALQEA+EA+LV LFED L +HA R
Sbjct: 73 LAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGR 121
>pdb|3NQU|A Chain A, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2
HETEROTETRAMER
Length = 140
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 66 LVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
L REI F D +Q+ A++ALQEA+EA+LV LFED L +HA R
Sbjct: 70 LAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGR 118
>pdb|3R45|A Chain A, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex
With Chaperone Hjurp
Length = 156
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 66 LVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
L REI F D +Q+ A++ALQEA+EA+LV LFED L +HA R
Sbjct: 86 LAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGR 134
>pdb|3NQJ|A Chain A, Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER
Length = 82
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 66 LVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
L REI F D +Q+ A++ALQEA+EA+LV LFED L +HA R
Sbjct: 12 LAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGR 60
>pdb|1B25|A Chain A, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|B Chain B, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|C Chain C, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B25|D Chain D, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus
pdb|1B4N|A Chain A, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|B Chain B, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|C Chain C, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
pdb|1B4N|D Chain D, Formaldehyde Ferredoxin Oxidoreductase From Pyrococcus
Furiosus, Complexed With Glutarate
Length = 619
Score = 27.3 bits (59), Expect = 3.3, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 91 ASEAYLVGLFEDTNL---CAIHAKR-GYDASASVGSTKKP 126
A+++ L G + D NL ++H +R GYDA G KKP
Sbjct: 79 AAKSPLTGGYGDGNLGTMASVHLRRAGYDALVVEGKAKKP 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.126 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,223,888
Number of Sequences: 62578
Number of extensions: 139686
Number of successful extensions: 255
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 50
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)