Query psy7427
Match_columns 151
No_of_seqs 155 out of 492
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 18:04:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yfv_A Histone H3-like centrom 100.0 5.3E-46 1.8E-50 274.9 3.0 90 35-136 2-97 (100)
2 1tzy_C Histone H3; histone-fol 100.0 2.5E-44 8.6E-49 278.2 1.8 90 35-136 37-129 (136)
3 3nqu_A Histone H3-like centrom 100.0 5.2E-42 1.8E-46 266.7 2.9 98 23-136 28-130 (140)
4 3r45_A Histone H3-like centrom 100.0 8.8E-42 3E-46 269.4 2.9 98 23-136 44-146 (156)
5 2hue_B Histone H3; mini beta s 100.0 3.7E-33 1.3E-37 198.0 3.2 67 58-136 4-70 (77)
6 3nqj_A Histone H3-like centrom 100.0 5.4E-33 1.8E-37 199.3 3.0 67 58-136 4-72 (82)
7 2l5a_A Histone H3-like centrom 100.0 4.6E-32 1.6E-36 225.3 4.7 77 57-145 11-92 (235)
8 2ly8_A Budding yeast chaperone 99.9 3.2E-27 1.1E-31 179.7 5.1 56 58-113 2-60 (121)
9 1b67_A Protein (histone HMFA); 99.7 7.3E-18 2.5E-22 113.8 2.6 62 58-136 3-64 (68)
10 1ku5_A HPHA, archaeal histon; 99.4 2.3E-14 8E-19 97.5 2.5 62 58-136 7-68 (70)
11 1n1j_A NF-YB; histone-like PAI 99.1 2.5E-11 8.6E-16 86.4 2.7 64 58-136 9-72 (93)
12 2yfw_B Histone H4, H4; cell cy 97.5 2.7E-05 9.3E-10 56.5 2.0 62 58-136 30-91 (103)
13 1id3_B Histone H4; nucleosome 97.5 3.2E-05 1.1E-09 56.4 2.2 62 58-136 29-90 (102)
14 3b0c_T CENP-T, centromere prot 97.5 2.7E-05 9.1E-10 57.6 1.8 49 76-136 21-69 (111)
15 2hue_C Histone H4; mini beta s 97.5 4E-05 1.4E-09 53.7 2.4 63 57-136 10-72 (84)
16 1taf_A TFIID TBP associated fa 97.5 6E-05 2.1E-09 51.8 3.1 59 65-136 5-63 (68)
17 1tzy_D Histone H4-VI; histone- 97.5 3.7E-05 1.3E-09 55.7 1.9 62 58-136 30-91 (103)
18 4dra_A Centromere protein S; D 97.4 5.5E-05 1.9E-09 56.8 2.5 61 62-136 32-92 (113)
19 3b0b_B CENP-S, centromere prot 97.4 6.6E-05 2.3E-09 55.7 2.6 61 62-136 24-84 (107)
20 3v9r_A MHF1, uncharacterized p 97.3 9.2E-05 3.1E-09 53.4 2.7 59 64-136 19-77 (90)
21 3vh5_A CENP-S; histone fold, c 97.2 0.00014 4.7E-09 56.5 2.3 59 64-136 26-84 (140)
22 3b0c_W CENP-W, centromere prot 97.1 0.00021 7.3E-09 49.0 2.2 61 60-136 7-67 (76)
23 1f1e_A Histone fold protein; a 96.9 0.00048 1.6E-08 53.8 3.2 66 59-140 6-73 (154)
24 1f1e_A Histone fold protein; a 96.9 0.00042 1.4E-08 54.1 2.4 61 59-136 84-144 (154)
25 1h3o_B Transcription initiatio 96.6 0.00083 2.8E-08 47.1 2.2 64 62-141 10-76 (76)
26 1taf_B TFIID TBP associated fa 96.6 0.0013 4.3E-08 45.5 3.0 56 68-136 13-68 (70)
27 4g92_C HAPE; transcription fac 96.6 0.0011 3.9E-08 49.1 2.8 65 59-136 40-104 (119)
28 2x4w_B Histone H3.2; transcrip 96.5 0.00074 2.5E-08 37.4 1.1 16 28-46 11-26 (26)
29 2byk_B Chrac-14; nucleosome sl 96.5 0.0022 7.7E-08 48.2 3.8 59 63-136 15-73 (128)
30 1n1j_B NF-YC; histone-like PAI 96.4 0.0016 5.4E-08 46.5 2.6 66 58-136 17-82 (97)
31 1jfi_B DR1 protein, transcript 96.2 0.0024 8.1E-08 51.1 3.0 60 61-136 19-78 (179)
32 1jfi_A Transcription regulator 95.9 0.006 2E-07 43.7 3.5 68 58-138 9-76 (98)
33 2ly8_A Budding yeast chaperone 94.2 0.014 4.8E-07 44.1 1.3 52 77-140 62-115 (121)
34 2byk_A Chrac-16; nucleosome sl 93.1 0.038 1.3E-06 42.2 2.0 66 58-136 17-83 (140)
35 2l5a_A Histone H3-like centrom 87.9 0.21 7.2E-06 41.5 2.0 48 77-136 176-223 (235)
36 2r10_A Chromatin structure-rem 86.0 0.18 6.2E-06 42.9 0.6 16 35-50 37-52 (361)
37 2nqb_C Histone H2A; nucleosome 84.9 0.62 2.1E-05 34.7 3.0 65 59-136 22-86 (123)
38 1f66_C Histone H2A.Z; nucleoso 84.8 0.59 2E-05 35.1 2.9 66 59-136 26-91 (128)
39 1tzy_A Histone H2A-IV; histone 84.0 0.71 2.4E-05 34.7 3.0 65 59-136 24-88 (129)
40 1id3_C Histone H2A.1; nucleoso 82.6 0.69 2.4E-05 34.9 2.4 65 59-136 24-88 (131)
41 2f8n_K Histone H2A type 1; nuc 82.0 0.8 2.7E-05 35.4 2.7 65 59-136 43-107 (149)
42 2f8n_G Core histone macro-H2A. 77.7 1.1 3.7E-05 33.2 2.1 48 77-136 38-85 (120)
43 2jss_A Chimera of histone H2B. 77.5 1.3 4.3E-05 34.9 2.5 48 77-136 122-169 (192)
44 1tzy_B Histone H2B; histone-fo 68.8 4.1 0.00014 30.9 3.4 62 63-136 38-99 (126)
45 2nqb_D Histone H2B; nucleosome 68.8 4.1 0.00014 30.8 3.4 62 63-136 35-96 (123)
46 2jss_A Chimera of histone H2B. 62.7 8.6 0.0003 30.1 4.3 62 63-136 5-66 (192)
No 1
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=100.00 E-value=5.3e-46 Score=274.85 Aligned_cols=90 Identities=43% Similarity=0.506 Sum_probs=63.2
Q ss_pred ccccccCCCCchhhhhhhhhhhc---cccchhhHhHHhhhhcccC---ccccchHHHHHHHHHHHHHHHhhhhchhhhhh
Q psy7427 35 RETQVYKAGTGPERDASHRWVQT---HRVTQVLSLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAI 108 (151)
Q Consensus 35 ~k~~RykPGTvALREIR~~Qkst---~rklPFqRLVREIaq~~~~---~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAi 108 (151)
+++|||+|||+||+|||+||++| ++++||+||||||+++|++ ++|||++|+.|||||+|+|||+||||+|+||+
T Consensus 2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~ 81 (100)
T 2yfv_A 2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLAL 81 (100)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999 6889999999999999987 89999999999999999999999999999999
Q ss_pred ccCcccCCccCCCCCCCCccccCcceee
Q psy7427 109 HAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 109 HAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
||||| |||++||+|+.
T Consensus 82 HAkRv------------Ti~~kDiqLa~ 97 (100)
T 2yfv_A 82 HAKRI------------TIMRKDMQLAR 97 (100)
T ss_dssp HTTCS------------EECHHHHHHHH
T ss_pred HcCCc------------cCCHHHHHHHH
Confidence 99999 99999999985
No 2
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=100.00 E-value=2.5e-44 Score=278.25 Aligned_cols=90 Identities=61% Similarity=0.787 Sum_probs=83.3
Q ss_pred ccccccCCCCchhhhhhhhhhhc---cccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccC
Q psy7427 35 RETQVYKAGTGPERDASHRWVQT---HRVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK 111 (151)
Q Consensus 35 ~k~~RykPGTvALREIR~~Qkst---~rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAK 111 (151)
+++|||+|||+||+|||+||++| ++++||+||||||+++|++++|||++|+.|||||+|+|||+||||+|+||+|||
T Consensus 37 kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAk 116 (136)
T 1tzy_C 37 KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK 116 (136)
T ss_dssp -----CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45889999999999999999999 578899999999999999999999999999999999999999999999999999
Q ss_pred cccCCccCCCCCCCCccccCcceee
Q psy7427 112 RGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 112 RV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
|| |||++||+|+.
T Consensus 117 Rv------------Ti~~kDiqLa~ 129 (136)
T 1tzy_C 117 RV------------TIMPKDIQLAR 129 (136)
T ss_dssp CS------------EECHHHHHHHH
T ss_pred Cc------------cCcHHhHHHHH
Confidence 99 99999999997
No 3
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=100.00 E-value=5.2e-42 Score=266.70 Aligned_cols=98 Identities=31% Similarity=0.391 Sum_probs=64.8
Q ss_pred cccccchhccccccccccCCCCchhhhhhhhhhhc---cccchhhHhHHhhhhccc--CccccchHHHHHHHHHHHHHHH
Q psy7427 23 RSHSHRDIVKKNRETQVYKAGTGPERDASHRWVQT---HRVTQVLSLVREIAQDFK--TDLRFQSSAVMALQEASEAYLV 97 (151)
Q Consensus 23 ~s~~~~~~vkk~~k~~RykPGTvALREIR~~Qkst---~rklPFqRLVREIaq~~~--~~lRfq~~AL~ALQEAAEayLV 97 (151)
+|....|+|++ +++||+||| |+|||+||++| ++++||+||||||+++|+ .++|||++||.|||||+|+|||
T Consensus 28 ~~~~~~g~~~~--~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv 103 (140)
T 3nqu_A 28 RRGPSLGASSH--QHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLV 103 (140)
T ss_dssp -----------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCC--CCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHH
Confidence 34344566665 557999998 99999999999 578999999999999998 5899999999999999999999
Q ss_pred hhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 98 GLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 98 ~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
+||||+||||+||||| |||++||+|+.
T Consensus 104 ~LFEdanlcAiHAkRV------------TIm~kDiqLAr 130 (140)
T 3nqu_A 104 HLFEDAYLLTLHAGRV------------TLFPKDVQLAR 130 (140)
T ss_dssp HHHHHHHHHHHHTTCS------------EECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc------------cccHHHHHHHH
Confidence 9999999999999999 99999999987
No 4
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=100.00 E-value=8.8e-42 Score=269.41 Aligned_cols=98 Identities=31% Similarity=0.391 Sum_probs=64.7
Q ss_pred cccccchhccccccccccCCCCchhhhhhhhhhhc---cccchhhHhHHhhhhccc--CccccchHHHHHHHHHHHHHHH
Q psy7427 23 RSHSHRDIVKKNRETQVYKAGTGPERDASHRWVQT---HRVTQVLSLVREIAQDFK--TDLRFQSSAVMALQEASEAYLV 97 (151)
Q Consensus 23 ~s~~~~~~vkk~~k~~RykPGTvALREIR~~Qkst---~rklPFqRLVREIaq~~~--~~lRfq~~AL~ALQEAAEayLV 97 (151)
++....|+|+| +++||+||| |||||+||++| ++++||+||||||+++|+ .++|||++||.|||||+|+|||
T Consensus 44 ksap~~g~~~~--~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV 119 (156)
T 3r45_A 44 RRGPSLGASSH--QHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLV 119 (156)
T ss_dssp -----------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCC--CCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHH
Confidence 34445566665 558999998 99999999999 578899999999999998 5899999999999999999999
Q ss_pred hhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 98 GLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 98 ~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
+||||+||||+||||| |||++||+|+.
T Consensus 120 ~LFEdanLcAiHAkRV------------TIm~kDIqLAr 146 (156)
T 3r45_A 120 HLFEDAYLLTLHAGRV------------TLFPKDVQLAR 146 (156)
T ss_dssp HHHHHHHHHHHHHTCS------------EECHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc------------cccHHHHHHHH
Confidence 9999999999999999 99999999987
No 5
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.97 E-value=3.7e-33 Score=198.03 Aligned_cols=67 Identities=73% Similarity=0.923 Sum_probs=65.6
Q ss_pred cccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 58 HRVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 58 ~rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
++++||+||||||+++|++++|||++|+.|||||+|+|||+||||+|+||+||||| |||++||+|+.
T Consensus 4 i~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRv------------Ti~~kDiqLa~ 70 (77)
T 2hue_B 4 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV------------TIMPKDIQLAR 70 (77)
T ss_dssp SCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHH
T ss_pred cccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc------------cCcHhhHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999 99999999987
No 6
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.97 E-value=5.4e-33 Score=199.30 Aligned_cols=67 Identities=40% Similarity=0.562 Sum_probs=64.9
Q ss_pred cccchhhHhHHhhhhccc--CccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCccee
Q psy7427 58 HRVTQVLSLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMI 135 (151)
Q Consensus 58 ~rklPFqRLVREIaq~~~--~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~ 135 (151)
++++||+||||||+++|+ .++|||++|+.|||||+|+|||+||||+|+||+||||| |||++||+|+
T Consensus 4 I~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRv------------Ti~~kDiqLa 71 (82)
T 3nqj_A 4 IRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV------------TLFPKDVQLA 71 (82)
T ss_dssp SCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------SBCHHHHHHH
T ss_pred cccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc------------cCcHHHHHHH
Confidence 578999999999999998 68999999999999999999999999999999999999 9999999998
Q ss_pred e
Q psy7427 136 I 136 (151)
Q Consensus 136 ~ 136 (151)
.
T Consensus 72 ~ 72 (82)
T 3nqj_A 72 R 72 (82)
T ss_dssp H
T ss_pred H
Confidence 7
No 7
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.6e-32 Score=225.28 Aligned_cols=77 Identities=51% Similarity=0.657 Sum_probs=72.1
Q ss_pred ccccchhhHhHHhhhhcccC---ccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcc
Q psy7427 57 THRVTQVLSLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQ 133 (151)
Q Consensus 57 t~rklPFqRLVREIaq~~~~---~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~ 133 (151)
-++++||+||||||+++|++ ++|||++||.|||||||+|||+||||+||||+||||| |||++|||
T Consensus 11 lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRV------------Tim~kDiq 78 (235)
T 2l5a_A 11 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRI------------TIMKKDMQ 78 (235)
T ss_dssp CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTS------------GGGTTHHH
T ss_pred cccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhccccc------------ccchhhHH
Confidence 47899999999999999986 8999999999999999999999999999999999999 99999999
Q ss_pred eee--eccccCCCc
Q psy7427 134 MII--WGIEIKPSQ 145 (151)
Q Consensus 134 l~~--~~~~~~~~~ 145 (151)
|+. .|....|.+
T Consensus 79 Larrirg~~~~p~e 92 (235)
T 2l5a_A 79 LARRIRGQFLVPRG 92 (235)
T ss_dssp HHHTSSCSCCCCSS
T ss_pred HHHHHhhccCCchh
Confidence 998 677666764
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.2e-27 Score=179.71 Aligned_cols=56 Identities=55% Similarity=0.744 Sum_probs=53.2
Q ss_pred cccchhhHhHHhhhhcccC---ccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcc
Q psy7427 58 HRVTQVLSLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRG 113 (151)
Q Consensus 58 ~rklPFqRLVREIaq~~~~---~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV 113 (151)
|+++||+||||||+++|++ ++|||++||.|||||+|+|||+||||+|||||||.|-
T Consensus 2 I~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~g 60 (121)
T 2ly8_A 2 ISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPR 60 (121)
T ss_dssp CSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCcc
Confidence 5799999999999999987 8999999999999999999999999999999999653
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.68 E-value=7.3e-18 Score=113.80 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=58.5
Q ss_pred cccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 58 HRVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 58 ~rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
.++.||+||+||+ ++.||+++|+.+||||+|+|++.||+|+|.||.|+||+ ||+.+|+++.+
T Consensus 3 lP~a~v~Ri~k~~-----~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRk------------TI~~~Di~~A~ 64 (68)
T 1b67_A 3 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRK------------TIKAEDIELAR 64 (68)
T ss_dssp SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHG
T ss_pred CCccHHHHHHhcC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------ccCHHHHHHHH
Confidence 4678999999999 57899999999999999999999999999999999999 99999999875
No 10
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.45 E-value=2.3e-14 Score=97.52 Aligned_cols=62 Identities=23% Similarity=0.255 Sum_probs=57.9
Q ss_pred cccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 58 HRVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 58 ~rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
+++.||.||+|++ +..||+++|+.+|+|++|.|+..+++|++.||.||||. ||+..|++|.+
T Consensus 7 lp~a~v~Rl~r~~-----g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRk------------TI~~~DV~lA~ 68 (70)
T 1ku5_A 7 LPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRK------------TVKVEDIKLAI 68 (70)
T ss_dssp SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCS------------EECHHHHHHHH
T ss_pred CChHHHHHHHHHc-----CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------cCCHHHHHHHH
Confidence 5788999999986 46899999999999999999999999999999999999 99999998864
No 11
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.10 E-value=2.5e-11 Score=86.41 Aligned_cols=64 Identities=9% Similarity=0.133 Sum_probs=58.0
Q ss_pred cccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 58 HRVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 58 ~rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
.++.|+.|++|++.. .+.+|+.+|+.+||+|+|.|+..|+++++.||.|+||. ||+.+|+..++
T Consensus 9 LP~a~i~ri~K~~~~---~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRk------------TI~~~Dv~~Al 72 (93)
T 1n1j_A 9 LPIANVARIMKNAIP---QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRK------------TINGEDILFAM 72 (93)
T ss_dssp CCHHHHHHHHHHTSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------SBCHHHHHHHH
T ss_pred CChhHHHHHHHHhCC---ccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------ccCHHHHHHHH
Confidence 356678999998854 36899999999999999999999999999999999999 99999999877
No 12
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=97.55 E-value=2.7e-05 Score=56.54 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=54.2
Q ss_pred cccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 58 HRVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 58 ~rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
+++.+..||.|..- .-|+..+|.++|+++.|.|+..+.+|+..+|-||+|- ||.+.|+.+++
T Consensus 30 ip~~~I~Rlar~~G-----~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRk------------tvt~~DV~~Al 91 (103)
T 2yfw_B 30 ITKPAIRRLARRGG-----VKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRK------------TVTSLDVVYAL 91 (103)
T ss_dssp CCHHHHHHHHHHTT-----CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHH
T ss_pred CCHHHHHHHHHHcC-----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------cCcHHHHHHHH
Confidence 45556777776542 2589999999999999999999999999999999999 99999999987
No 13
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.53 E-value=3.2e-05 Score=56.38 Aligned_cols=62 Identities=15% Similarity=0.146 Sum_probs=55.3
Q ss_pred cccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 58 HRVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 58 ~rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
+++.|..||.|.. ..-|+..+|.++|+++.|.|+-.+-+|+..+|-||+|- |+...|+.+++
T Consensus 29 ip~~~I~Rlar~~-----Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRK------------TVt~~DV~~AL 90 (102)
T 1id3_B 29 ITKPAIRRLARRG-----GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRK------------TVTSLDVVYAL 90 (102)
T ss_dssp SCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHH
T ss_pred CCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------cCcHHHHHHHH
Confidence 5666788888764 34789999999999999999999999999999999999 99999998877
No 14
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=97.53 E-value=2.7e-05 Score=57.58 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=46.8
Q ss_pred CccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 76 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 76 ~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
...|+..+|.++|+|+++.|+..+-.|++..|-||+|- |+...|+.|.+
T Consensus 21 g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RK------------TV~~eDV~lal 69 (111)
T 3b0c_T 21 VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRK------------TVEMADVELLM 69 (111)
T ss_dssp HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------cCCHHHHHHHH
Confidence 46799999999999999999999999999999999999 99999999987
No 15
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=97.51 E-value=4e-05 Score=53.71 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=55.2
Q ss_pred ccccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 57 THRVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 57 t~rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
.+++.+..||.|.. ..-|+..+|.++|++..|.|+-.+-+|+..+|-||+|- |+...|+.+++
T Consensus 10 ~ip~~~I~Riar~~-----Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RK------------Tvt~~DV~~Al 72 (84)
T 2hue_C 10 GITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRK------------TVTAMDVVYAL 72 (84)
T ss_dssp SSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHT
T ss_pred CCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------cCcHHHHHHHH
Confidence 35666777887754 34789999999999999999999999999999999999 99999998876
No 16
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.50 E-value=6e-05 Score=51.84 Aligned_cols=59 Identities=15% Similarity=0.329 Sum_probs=51.5
Q ss_pred HhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 65 SLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 65 RLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
++|..|..+.+- -+|...+...|-|.+|.|..++..|+...|-||+|- |+...|++|.+
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrk------------tv~~eDVkLAi 63 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKK------------TIDLDDVRLAT 63 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------SBCHHHHHHHH
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------CCCHHHHHHHH
Confidence 455566655443 489999999999999999999999999999999999 99999999875
No 17
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=97.47 E-value=3.7e-05 Score=55.70 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=54.5
Q ss_pred cccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 58 HRVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 58 ~rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
+++.+..||.|..- .-|+..+|.++|+++.|.|+..+.+|+..+|-|++|- |+.+.|+.+++
T Consensus 30 ip~~~I~Rlar~~G-----~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRk------------tIt~~DV~~Al 91 (103)
T 1tzy_D 30 ITKPAIRRLARRGG-----VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRK------------TVTAMDVVYAL 91 (103)
T ss_dssp SCHHHHHHHHHHTT-----CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHH
T ss_pred CCHHHHHHHHHHcC-----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------cCCHHHHHHHH
Confidence 45566777777542 2589999999999999999999999999999999999 99999999987
No 18
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=97.43 E-value=5.5e-05 Score=56.84 Aligned_cols=61 Identities=25% Similarity=0.331 Sum_probs=54.7
Q ss_pred hhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 62 QVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 62 PFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
...|+|++...+. +..+.++++.||-|.++.|+..+-.|+...|-||+|- ||...|+.|.+
T Consensus 32 ~V~rIvke~gaer--~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRk------------TI~~eDV~La~ 92 (113)
T 4dra_A 32 TVGCLCEEVALDK--EMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRT------------TINTEDVKLLA 92 (113)
T ss_dssp HHHHHHHHHHHHH--TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHT
T ss_pred HHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------ccCHHHHHHHH
Confidence 4568888877653 4669999999999999999999999999999999999 99999999986
No 19
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=97.41 E-value=6.6e-05 Score=55.68 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=53.8
Q ss_pred hhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 62 QVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 62 PFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
...|+|++...+. +.++.++++.+|-|.++.|..++-.|+...|-||+|- ||...|++|.+
T Consensus 24 ~V~rI~~~~g~~~--~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRk------------TI~~eDV~La~ 84 (107)
T 3b0b_B 24 TTGCLCQDVAEDK--GVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRS------------TITSEDVKLLA 84 (107)
T ss_dssp HHHHHHHHHHHHH--TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHT
T ss_pred HHHHHHHHHhhhc--CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC------------cCCHHHHHHHH
Confidence 3567777776532 4689999999999999999999999999999999999 99999999986
No 20
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.35 E-value=9.2e-05 Score=53.43 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=51.2
Q ss_pred hHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 64 LSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 64 qRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
.++|.|.... .+..+.+.++.||-|.++.|+..+-.|+...|-||+|- |+...|+.|.+
T Consensus 19 ~ki~~e~~~~--~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRk------------TI~~eDV~L~~ 77 (90)
T 3v9r_A 19 EERLQQVLSS--EDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRG------------VVNKSDLMLYL 77 (90)
T ss_dssp HHHHHHHSCS--SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHT
T ss_pred HHHHHHHHHh--cCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------ccCHHHHHHHH
Confidence 4566666332 24779999999999999999999999999999999999 99999999986
No 21
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.20 E-value=0.00014 Score=56.53 Aligned_cols=59 Identities=22% Similarity=0.340 Sum_probs=51.8
Q ss_pred hHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 64 LSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 64 qRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
.++|.|.+.+ .+..+..+++.||-|+++.|+..+-.|+...|-||+|- ||...|+.|.+
T Consensus 26 gkIvee~~~~--~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRK------------TI~~eDVkLa~ 84 (140)
T 3vh5_A 26 GALAQDVAED--KGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRS------------TITSEDVKLLA 84 (140)
T ss_dssp HHHHHHHHHH--HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHH
T ss_pred HHHHHHHHHh--cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------ccCHHHHHHHH
Confidence 4555555543 35789999999999999999999999999999999999 99999999986
No 22
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=97.09 E-value=0.00021 Score=48.96 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=53.0
Q ss_pred cchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 60 VTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 60 klPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
+.+..|+++++. ++.++..+|..+|++++|.|+..|-..++-.|-|++|- ||..+|++.++
T Consensus 7 ~A~V~rI~K~~~----p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rK------------TI~~~dI~~A~ 67 (76)
T 3b0c_W 7 RGTLRKIIKKHK----PHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSK------------IIKPEHTIAAA 67 (76)
T ss_dssp HHHHHHHHHHHC----TTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS------------SBCHHHHHHHH
T ss_pred ccHHHHHHHHhC----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------CCCHHHHHHHH
Confidence 344677777664 36789999999999999999999999999999999999 99999987654
No 23
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=96.93 E-value=0.00048 Score=53.82 Aligned_cols=66 Identities=8% Similarity=0.041 Sum_probs=57.4
Q ss_pred ccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee--
Q psy7427 59 RVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII-- 136 (151)
Q Consensus 59 rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~-- 136 (151)
++.|..||.|+-. +..|...+|-++|++++|.|+..+-.+++-.|-|++|- |++..|+...+
T Consensus 6 P~a~V~Riik~~l----g~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RK------------Tv~a~DV~~a~~~ 69 (154)
T 1f1e_A 6 PKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKK------------TLMEEHLKALADV 69 (154)
T ss_dssp CHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCS------------EECHHHHHHHHHH
T ss_pred CccHHHHHHHhcC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------cCCHHHHHHHHHh
Confidence 4556778888765 35899999999999999999999999999999999999 99999998777
Q ss_pred eccc
Q psy7427 137 WGIE 140 (151)
Q Consensus 137 ~~~~ 140 (151)
.|.+
T Consensus 70 lg~~ 73 (154)
T 1f1e_A 70 LMVE 73 (154)
T ss_dssp HTCT
T ss_pred cccc
Confidence 4544
No 24
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=96.88 E-value=0.00042 Score=54.14 Aligned_cols=61 Identities=16% Similarity=-0.006 Sum_probs=54.4
Q ss_pred ccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 59 RVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 59 rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
++.|..||.|+- ...|...+|-++|+++.|.|+..+.++++-.|-|++|. |+...|+.+.+
T Consensus 84 P~a~V~Ri~k~~-----g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RK------------TIt~eDV~~Al 144 (154)
T 1f1e_A 84 GRATVRRILKRA-----GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRK------------TVQGEDVEKAI 144 (154)
T ss_dssp CHHHHHHHHHHT-----TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHH
T ss_pred CccHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------ccCHHHHHHHH
Confidence 445577888876 46799999999999999999999999999999999999 99999998765
No 25
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=96.62 E-value=0.00083 Score=47.14 Aligned_cols=64 Identities=17% Similarity=0.323 Sum_probs=57.1
Q ss_pred hhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee---ec
Q psy7427 62 QVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII---WG 138 (151)
Q Consensus 62 PFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~---~~ 138 (151)
-.+.||++|- +...+..++-++|.+.|++|+-+..+.+-..|-|.|=- ||.++|++|++ |+
T Consensus 10 ~L~~Lv~~id----p~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~------------~le~kDvql~Ler~wn 73 (76)
T 1h3o_B 10 KLQDLVREVD----PNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSS------------TLEVKDVQLHLERQWN 73 (76)
T ss_dssp HHHHHHHHHC----SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------------EECHHHHHHHHHHHTC
T ss_pred HHHHHHHhcC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------CccHHHHHHHHHhhcC
Confidence 3578888885 56789999999999999999999999999999999888 99999999998 88
Q ss_pred ccc
Q psy7427 139 IEI 141 (151)
Q Consensus 139 ~~~ 141 (151)
+.|
T Consensus 74 i~i 76 (76)
T 1h3o_B 74 MWI 76 (76)
T ss_dssp CCC
T ss_pred CcC
Confidence 765
No 26
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.61 E-value=0.0013 Score=45.48 Aligned_cols=56 Identities=21% Similarity=0.209 Sum_probs=47.0
Q ss_pred HhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 68 REIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 68 REIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
+.|++..+ --+...+|..+|-+-.|.++-.+.+++..++-|+||- ||.+.|+.+++
T Consensus 13 ~~iaes~G-i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk------------~Lt~~DI~~Al 68 (70)
T 1taf_B 13 KVIAESIG-VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQ------------KLSVRDIDMSL 68 (70)
T ss_dssp HHHHHHTT-CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------SBCHHHHHHHH
T ss_pred HHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------eecHHHHHHHH
Confidence 33444332 2378899999999999999999999999999999999 99999998753
No 27
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=96.57 E-value=0.0011 Score=49.08 Aligned_cols=65 Identities=8% Similarity=0.114 Sum_probs=56.9
Q ss_pred ccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 59 RVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 59 rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
..+|..| |+.|...-...-+...+|..+|..|+|-|+..|.+.|+.+|-..||- ||..+|+..++
T Consensus 40 ~~lPvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krk------------tI~~~di~~Av 104 (119)
T 4g92_C 40 HQLPLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRR------------TLQRSDIAAAL 104 (119)
T ss_dssp CSSCHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHH
T ss_pred CCCCHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC------------ccCHHHHHHHH
Confidence 3579888 56677654556799999999999999999999999999999999999 99999998877
No 28
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=96.52 E-value=0.00074 Score=37.35 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=12.1
Q ss_pred chhccccccccccCCCCch
Q psy7427 28 RDIVKKNRETQVYKAGTGP 46 (151)
Q Consensus 28 ~~~vkk~~k~~RykPGTvA 46 (151)
.++++ ++|||+|||||
T Consensus 11 ~~~~k---k~~RyRPGtvA 26 (26)
T 2x4w_B 11 TGGVX---KPHRYRXXXXX 26 (26)
T ss_pred CCccc---cccccccccCC
Confidence 44455 47899999997
No 29
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=96.47 E-value=0.0022 Score=48.23 Aligned_cols=59 Identities=10% Similarity=0.125 Sum_probs=50.6
Q ss_pred hhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 63 VLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 63 FqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
..|++++.. ....++..+|..+|++|+|.|+..|-..++-.|.|.+|- ||...|+..++
T Consensus 15 I~rImK~~~---pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRK------------TI~~~Dv~~Al 73 (128)
T 2byk_B 15 IGRLIKEAL---PESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHK------------TITAKDILQTL 73 (128)
T ss_dssp HHHHHHHHS---CTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------SCCHHHHHHHH
T ss_pred HHHHHHHhC---cccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------ccCHHHHHHHH
Confidence 445555443 346899999999999999999999999999999999999 99999988766
No 30
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.41 E-value=0.0016 Score=46.51 Aligned_cols=66 Identities=12% Similarity=0.111 Sum_probs=54.8
Q ss_pred cccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 58 HRVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 58 ~rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
...+|..|+ +.|.+.-...-+...+|..+|..|+|.|+..|-+.++.+|-+.||. ||..+|+.+++
T Consensus 17 ~~~lP~arI-krImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krk------------tI~~~di~~Av 82 (97)
T 1n1j_B 17 VQELPLARI-KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRR------------TLQRNDIAMAI 82 (97)
T ss_dssp ---CCHHHH-HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHH
T ss_pred CCcCCHHHH-HHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc------------cCCHHHHHHHH
Confidence 356788885 5566544444689999999999999999999999999999999999 99999999876
No 31
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.24 E-value=0.0024 Score=51.08 Aligned_cols=60 Identities=7% Similarity=0.148 Sum_probs=53.2
Q ss_pred chhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 61 TQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 61 lPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
.+..|+++++.. +.++..+|..+|+++++.|+.-|-..+|-.+.|.+|- ||...|+...+
T Consensus 19 A~V~RImK~alp----~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RK------------TI~~eDVl~Al 78 (179)
T 1jfi_B 19 AAINKMIKETLP----NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKK------------TISPEHVIQAL 78 (179)
T ss_dssp HHHHHHHHHHST----TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------SBCHHHHHHHH
T ss_pred HHHHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------cCCHHHHHHHH
Confidence 346778777753 6899999999999999999999999999999999999 99999998766
No 32
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=95.91 E-value=0.006 Score=43.71 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=53.2
Q ss_pred cccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceeee
Q psy7427 58 HRVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMIIW 137 (151)
Q Consensus 58 ~rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~~ 137 (151)
...+|..|+ +.|.+.-...-+...+|..+|-.|+|.|+..|.+.+..+|-+.+|- ||..+|+++++-
T Consensus 9 ~~~fPvaRI-krimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krk------------tI~~~di~~av~ 75 (98)
T 1jfi_A 9 NARFPPARI-KKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAK------------TMTTSHLKQCIE 75 (98)
T ss_dssp -CCCCHHHH-HHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---------------CBCHHHHHTTCC
T ss_pred CCCCChHHH-HHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------eecHHHHHHHHh
Confidence 345787875 4555543333689999999999999999999999999999999999 999999999873
Q ss_pred c
Q psy7427 138 G 138 (151)
Q Consensus 138 ~ 138 (151)
.
T Consensus 76 ~ 76 (98)
T 1jfi_A 76 L 76 (98)
T ss_dssp -
T ss_pred c
Confidence 3
No 33
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=94.25 E-value=0.014 Score=44.09 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=47.6
Q ss_pred ccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee--eccc
Q psy7427 77 DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII--WGIE 140 (151)
Q Consensus 77 ~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~--~~~~ 140 (151)
--|...++-+.+.++.|.||-.+-.|+...|-||+|- |+...|+.+++ .|..
T Consensus 62 vkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RK------------TVta~DV~~Alkr~G~~ 115 (121)
T 2ly8_A 62 SKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRK------------TVTSLDVVYALKRQGRT 115 (121)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------------CBCHHHHHHHHHHTTCG
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------cCcHHHHHHHHHhCCCc
Confidence 3589999999999999999999999999999999999 99999999887 5544
No 34
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=93.08 E-value=0.038 Score=42.20 Aligned_cols=66 Identities=6% Similarity=0.050 Sum_probs=47.4
Q ss_pred cccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhh-hccCcccCCccCCCCCCCCccccCcceee
Q psy7427 58 HRVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCA-IHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 58 ~rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcA-iHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
...+|..|+ +.|++.-...-+...+|..++..|+|-|+..|.+.++.+| .-.||- ||...|+..++
T Consensus 17 ~~~LPlaRI-KrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRK------------tI~~~Dl~~AV 83 (140)
T 2byk_A 17 ETFLPLSRV-RTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGE------------ALKYEHLSQVV 83 (140)
T ss_dssp -------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSC------------EECHHHHHHHH
T ss_pred CCCCCHHHH-HHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------------ccCHHHHHHHH
Confidence 346788885 6677654445689999999999999999999999999998 878888 99999998776
No 35
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=87.89 E-value=0.21 Score=41.48 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=45.3
Q ss_pred ccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 77 DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 77 ~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
--|....+-+.|-++.|.||-.+-.|+...|-||+|- |+...|+.+++
T Consensus 176 VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RK------------TVta~DV~~AL 223 (235)
T 2l5a_A 176 VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRK------------TVTSLDVVYAL 223 (235)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------------SCCHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------cCcHHHHHHHH
Confidence 4689999999999999999999999999999999999 99999998876
No 36
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=86.02 E-value=0.18 Score=42.89 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=12.8
Q ss_pred ccccccCCCCchhhhh
Q psy7427 35 RETQVYKAGTGPERDA 50 (151)
Q Consensus 35 ~k~~RykPGTvALREI 50 (151)
+++|||+|||+|+.|.
T Consensus 37 kkp~R~rPGt~a~~e~ 52 (361)
T 2r10_A 37 DERPKYLPGKHPKNQE 52 (361)
T ss_dssp --CCSSCCSCCBCCCS
T ss_pred CCCcccCCCccccccc
Confidence 4588999999998885
No 37
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=84.86 E-value=0.62 Score=34.72 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=51.6
Q ss_pred ccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 59 RVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 59 rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
+.+|..|+-|=+-.. ....|...+|-..|-.+-|.+.-.++|-+.-.|.|++|. +|.++|++|++
T Consensus 22 L~fPV~ri~R~Lk~~-~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~k------------rItp~hi~lAI 86 (123)
T 2nqb_C 22 LQFPVGRIHRLLRKG-NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKT------------RIIPRHLQLAI 86 (123)
T ss_dssp CSSCHHHHHHHHHHT-TSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHH
T ss_pred eeccHHHHHHHHHcc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------------cccHHHHHHHH
Confidence 445655544433222 223489999999999999999999999999999999999 99999999976
No 38
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=84.78 E-value=0.59 Score=35.09 Aligned_cols=66 Identities=14% Similarity=0.046 Sum_probs=52.0
Q ss_pred ccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 59 RVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 59 rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
+.+|..|+-|=+-..-....|....|-..|-.+-|.+...++|-+.-.|.|.+|. +|.++|++|++
T Consensus 26 LqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~k------------rItprhi~lAI 91 (128)
T 1f66_C 26 LQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVK------------RITPRHLQLAI 91 (128)
T ss_dssp CSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCS------------EECHHHHHHHH
T ss_pred ccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------eEcHHHHHHHH
Confidence 4566555544332221123589999999999999999999999999999999999 99999999976
No 39
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=83.99 E-value=0.71 Score=34.69 Aligned_cols=65 Identities=17% Similarity=0.110 Sum_probs=51.7
Q ss_pred ccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 59 RVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 59 rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
+.+|..|+-|=+-.. ....|....|-..|-.+-|.+.-.++|-+.-.|.|++|. +|.++|++|++
T Consensus 24 LqfPV~rI~R~Lk~~-~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~k------------rItp~hi~lAI 88 (129)
T 1tzy_A 24 LQFPVGRVHRLLRKG-NYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKT------------RIIPRHLQLAI 88 (129)
T ss_dssp CSSCHHHHHHHHHHT-TSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHH
T ss_pred eeccHHHHHHHHHcc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------eEcHHHHHHHH
Confidence 445655544433222 223489999999999999999999999999999999999 99999999976
No 40
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=82.55 E-value=0.69 Score=34.86 Aligned_cols=65 Identities=18% Similarity=0.135 Sum_probs=51.8
Q ss_pred ccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 59 RVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 59 rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
+.+|..|+-|=+-.. ....|....|-..|-.+-|.+.-.++|-+.-.|.|++|. +|.++|++|++
T Consensus 24 LqfPV~rI~R~Lk~~-~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~k------------rItp~hI~lAI 88 (131)
T 1id3_C 24 LTFPVGRVHRLLRRG-NYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKT------------RIIPRHLQLAI 88 (131)
T ss_dssp CSSCHHHHHHHHHTT-CSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHH
T ss_pred eecCHHHHHHHHHcc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCc------------eEcHHHHHHHH
Confidence 445655554433322 223489999999999999999999999999999999999 99999999976
No 41
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=82.01 E-value=0.8 Score=35.44 Aligned_cols=65 Identities=17% Similarity=0.087 Sum_probs=51.7
Q ss_pred ccchhhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 59 RVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 59 rklPFqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
+.+|..|+-|=+-. -....|....|-..|-.+-|.+.-.++|-+.-.|.|++|. +|.++|++|++
T Consensus 43 LqFPVgrI~R~LK~-~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krk------------rItprhI~lAI 107 (149)
T 2f8n_K 43 LQFPVGRVHRLLRK-GNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKT------------RIIPRHLQLAI 107 (149)
T ss_dssp CSSCHHHHHHHHHH-TTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHH
T ss_pred eeccHHHHHHHHHc-cccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------cCcHHHHHHHH
Confidence 44565555443322 2223489999999999999999999999999999999999 99999999976
No 42
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=77.74 E-value=1.1 Score=33.24 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=44.6
Q ss_pred ccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 77 DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 77 ~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
..|...+|-..|-.+-|.+.-.++|-+.-.|.|++|. +|.++|++|++
T Consensus 38 a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~------------rItp~hi~lAI 85 (120)
T 2f8n_G 38 KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKG------------RVTPRHILLAV 85 (120)
T ss_dssp SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCc------------eEcHHHHHHHH
Confidence 3589999999999999999999999999999999999 99999999976
No 43
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=77.49 E-value=1.3 Score=34.90 Aligned_cols=48 Identities=21% Similarity=0.140 Sum_probs=44.5
Q ss_pred ccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 77 DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 77 ~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
..|...+|-..|-.+-|.+.-.++|-+.-.|.|+||. ++.++|++|++
T Consensus 122 ~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~------------~I~p~~i~lAi 169 (192)
T 2jss_A 122 RTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVK------------RITPRHLQLAI 169 (192)
T ss_dssp SCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCS------------SCCHHHHHHHH
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------ccCHHHHHHHH
Confidence 3588899999999999999999999999999999999 99999999986
No 44
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=68.84 E-value=4.1 Score=30.93 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=46.9
Q ss_pred hhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 63 VLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 63 FqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
|..-|..|.....+|..+.+.|+..|-.-.++++-.+=..+.-.+.|.||. ||..+|+|...
T Consensus 38 y~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~------------TitsreIqtAv 99 (126)
T 1tzy_B 38 YSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRS------------TITSREIQTAV 99 (126)
T ss_dssp CHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS------------EECHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------CCCHHHHHHHH
Confidence 444444444444577889999999888877777666667778889999999 99999998764
No 45
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=68.76 E-value=4.1 Score=30.77 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=46.2
Q ss_pred hhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 63 VLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 63 FqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
|..-|..|.....++..+.+.|+..|-.-.+++.-.+-..+.-.+.|.||. ||..+|+|...
T Consensus 35 y~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~------------TitsreIqtAv 96 (123)
T 2nqb_D 35 YAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRS------------TITSREIQTAV 96 (123)
T ss_dssp SHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------------EECHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------cCCHHHHHHHH
Confidence 333344444444567889999998888777776666666777788999999 99999998764
No 46
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=62.69 E-value=8.6 Score=30.08 Aligned_cols=62 Identities=10% Similarity=0.120 Sum_probs=48.9
Q ss_pred hhHhHHhhhhcccCccccchHHHHHHHHHHHHHHHhhhhchhhhhhccCcccCCccCCCCCCCCccccCcceee
Q psy7427 63 VLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRGYDASASVGSTKKPAMTPQMQMII 136 (151)
Q Consensus 63 FqRLVREIaq~~~~~lRfq~~AL~ALQEAAEayLV~LFEdsnLcAiHAKRV~~~~~~~~~~~~tl~~~dm~l~~ 136 (151)
|.--+..+.....++..+..+|+.-|-.-..+.+..+-..+.-.+.|.+|- |+..+|++...
T Consensus 5 ~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~------------Tit~~eIq~Av 66 (192)
T 2jss_A 5 YSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKS------------TISAREIQTAV 66 (192)
T ss_dssp THHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC------------SCCHHHHHHHH
T ss_pred HHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------CCCHHHHHHHH
Confidence 344444455555567889999999998888888888888888888999999 99999988654
Done!