RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7427
(151 letters)
>gnl|CDD|185400 PTZ00018, PTZ00018, histone H3; Provisional.
Length = 136
Score = 101 bits (252), Expect = 3e-28
Identities = 45/47 (95%), Positives = 47/47 (100%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQSSAV+ALQEA+EAYLVGLFEDTNLCAIHAKR
Sbjct: 71 LVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKR 117
>gnl|CDD|128705 smart00428, H3, Histone H3.
Length = 105
Score = 92.5 bits (230), Expect = 3e-25
Identities = 42/49 (85%), Positives = 44/49 (89%), Gaps = 2/49 (4%)
Query: 66 LVREIAQDFKT--DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQ F T DLRFQSSA+MALQEA+EAYLVGLFEDTNL AIHAKR
Sbjct: 38 LVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKR 86
>gnl|CDD|177733 PLN00121, PLN00121, histone H3; Provisional.
Length = 136
Score = 90.5 bits (224), Expect = 3e-24
Identities = 45/47 (95%), Positives = 47/47 (100%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREIAQDFKTDLRFQSSAV+ALQEA+EAYLVGLFEDTNLCAIHAKR
Sbjct: 71 LVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKR 117
>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4.
Length = 75
Score = 66.0 bits (162), Expect = 3e-15
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
+VRE+ + F +LR S A +ALQEA E L + ED L A HAKR
Sbjct: 14 VVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKR 60
>gnl|CDD|165727 PLN00160, PLN00160, histone H3; Provisional.
Length = 97
Score = 63.1 bits (153), Expect = 6e-14
Identities = 31/48 (64%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Query: 66 LVREIAQDF-KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
LVREI + + R+Q SA++ALQEA+EA+LVGLFED+NLCAIH KR
Sbjct: 30 LVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKR 77
>gnl|CDD|215082 PLN00161, PLN00161, histone H3; Provisional.
Length = 135
Score = 57.7 bits (139), Expect = 2e-11
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 15 TRSTRDDYRSHSHRDIVKKNRETQVYKAGTGPERDASHRWVQTHRVTQVL---SLVREIA 71
R + + S + +++ Y+ GT R+ T + + L LVREI+
Sbjct: 10 FRKGKKPQKEASGVTRQELDKKPHRYRPGTVALREIRKYQKSTELLIRKLPFARLVREIS 69
Query: 72 QDFKTD-LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
+ + R+ + A++ALQEA+E +LV LFED NLCAIHAKR
Sbjct: 70 NEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKR 111
>gnl|CDD|224947 COG2036, HHT1, Histones H3 and H4 [Chromatin structure and
dynamics].
Length = 91
Score = 55.8 bits (135), Expect = 3e-11
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 66 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 112
++R+ + R SSA+ LQEA E YL + ED A HAKR
Sbjct: 28 ILRKAGAE-----RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKR 69
>gnl|CDD|224563 COG1649, COG1649, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 418
Score = 28.9 bits (65), Expect = 1.1
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 20 DDYRSHSHRDIVKKNRETQVYKAGTGPERDASHRWVQTHRVTQVLSLVREIAQ---DFKT 76
DDY + + T Y+ TG ++ R + +LV +I+Q K
Sbjct: 206 DDYFYYPIPFGYDPDTVTL-YRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKP 264
Query: 77 DLRFQSSAVMALQEASEAY 95
+++F S L A+ AY
Sbjct: 265 NVKFSVSPFNPLGSATFAY 283
>gnl|CDD|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase.
Length = 545
Score = 28.3 bits (63), Expect = 1.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 76 TDLRFQSSAVMALQEASEAYLVGLFEDTNL 105
T L + ++AL EA + Y+V + ED +L
Sbjct: 178 TALIYHHGKLLALSEADKPYVVKVLEDGDL 207
>gnl|CDD|226375 COG3857, AddB, ATP-dependent nuclease, subunit B [DNA replication,
recombination, and repair].
Length = 1108
Score = 27.4 bits (61), Expect = 3.2
Identities = 8/45 (17%), Positives = 21/45 (46%)
Query: 54 WVQTHRVTQVLSLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 98
W +++ ++ + REI Q + R++ A++ A+ +
Sbjct: 301 WQASNQKEEIEGVAREIRQKIREGYRYKDIAILLGDPAAYELTLK 345
>gnl|CDD|180917 PRK07279, dnaE, DNA polymerase III DnaE; Reviewed.
Length = 1034
Score = 27.3 bits (61), Expect = 3.8
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 15/65 (23%)
Query: 65 SLVREIAQDFKTDL---RF--QSSAVMALQEASEAYLV--GLFE-------DTNLCAIHA 110
LV I+ DF TDL RF AV L+E +E L GL+ D L IH
Sbjct: 214 KLVSGISYDFDTDLKLPRFNRDRPAVEELRELAELGLKEKGLWSSPYQERLDKELSVIH- 272
Query: 111 KRGYD 115
G+D
Sbjct: 273 DMGFD 277
>gnl|CDD|192333 pfam09690, PYST-C1, Plasmodium yoelii subtelomeric region
(PYST-C1). This group of sequences are defined by the
N-terminal domain of a paralogous family of Plasmodium
yoelii genes preferentially located in the subtelomeric
regions of the chromosomes. There are no obvious
homologues to these genes in any other organism. The
C-terminal portions of the genes that contain this
domain are divergent and some contain other
yoelii-specific paralogous domains such as PYST-C2
(IPR006491).
Length = 57
Score = 24.7 bits (54), Expect = 5.9
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 12 NTCTRSTRDDYRSHSHRDIVKKNRETQ 38
N R+ + RS+ I K RETQ
Sbjct: 7 NRSIRAIKKINRSNEKNGIESK-RETQ 32
>gnl|CDD|220478 pfam09935, DUF2167, Protein of unknown function (DUF2167). This
domain, found in various hypothetical membrane-anchored
prokaryotic proteins, has no known function.
Length = 241
Score = 26.1 bits (58), Expect = 8.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 111 KRGYDASASVGSTKKPAMTPQMQMIIWGIEIK 142
++GY+A VG +KP + W E+K
Sbjct: 102 EQGYEAIELVGWAEKPHYDAATHRLYWAKELK 133
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.126 0.369
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,038,756
Number of extensions: 569450
Number of successful extensions: 443
Number of sequences better than 10.0: 1
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 14
Length of query: 151
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 63
Effective length of database: 7,034,450
Effective search space: 443170350
Effective search space used: 443170350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)