BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7429
(555 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ5|D Chain D, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
pdb|4AQ9|D Chain D, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 461
Score = 313 bits (802), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 159/364 (43%), Positives = 230/364 (63%), Gaps = 26/364 (7%)
Query: 18 SLTFLVFSVI-IAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNL 76
L L+FS + G++ RL +LL NYN++IRPV +++ + + +GL+L QLI
Sbjct: 10 GLVLLLFSCCGLVLGSEHETRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLI---- 65
Query: 77 KNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDI 136
N + NQI+ TNV + Q+W D +L+W+P +YGG+ + +PS+ +WLPD+
Sbjct: 66 -----------NVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDL 114
Query: 137 VLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWT 196
VLYNNADG++ + MTK +L Y GK++W PPAI+KS+CEI V +FPFD Q C MK G WT
Sbjct: 115 VLYNNADGDFAIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWT 174
Query: 197 YDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCC-EEPYPDI 255
YDG V + P+SD+ DL + S EW + ++ +Y+CC + PY DI
Sbjct: 175 YDGTKVSI-----SPESDR----PDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDI 225
Query: 256 IFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCXXXXXXXXXXXXXXA 315
++ ++R L++ VN+IIPC+ SFL+VLVFYLP+DSGEK++L
Sbjct: 226 TYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIV 285
Query: 316 EIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLP 375
E+IP TS VPL+GKY+LFTMI V S++VT+ V+N + RSP TH M WV K+FI +P
Sbjct: 286 ELIPSTSSAVPLIGKYMLFTMIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIFINTIP 345
Query: 376 KILF 379
++F
Sbjct: 346 NVMF 349
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 513 TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
T + Q+W D +L+W+P +YGG+ + +PS+ +WLPD+VLYN
Sbjct: 76 TNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYN 118
>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution.
pdb|2BG9|D Chain D, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 289 bits (740), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 146/330 (44%), Positives = 211/330 (63%), Gaps = 25/330 (7%)
Query: 32 NDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNL 91
++ RL +LL NYN++IRPV +++ + + +GL+L QLI N +
Sbjct: 1 SEHETRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLI---------------NVDE 45
Query: 92 KNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIM 151
NQI+ TNV + Q+W D +L+W+P +YGG+ + +PS+ +WLPD+VLYNNADG++ + M
Sbjct: 46 VNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHM 105
Query: 152 TKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGP 211
TK +L Y GK++W PPAI+KS+CEI V +FPFD Q C MK G WTYDG V + P
Sbjct: 106 TKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSI-----SP 160
Query: 212 DSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCC-EEPYPDIIFNITLRRKTLFYTV 270
+SD+ DL + S EW + ++ +Y+CC + PY DI ++ ++R L++ V
Sbjct: 161 ESDR----PDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVV 216
Query: 271 NLIIPCVGISFLSVLVFYLPSDSGEKVSLCXXXXXXXXXXXXXXAEIIPPTSLTVPLLGK 330
N+IIPC+ SFL+VLVFYLP+DSGEK++L E+IP TS VPL+GK
Sbjct: 217 NVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGK 276
Query: 331 YLLFTMILVTLSVVVTIAVLNVNFRSPVTH 360
Y+LFTMI V S++VT+ V+N + RSP TH
Sbjct: 277 YMLFTMIFVISSIIVTVVVINTHHRSPSTH 306
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 513 TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
T + Q+W D +L+W+P +YGG+ + +PS+ +WLPD+VLYN
Sbjct: 52 TNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYN 94
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 493
Score = 274 bits (700), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 149/367 (40%), Positives = 217/367 (59%), Gaps = 23/367 (6%)
Query: 22 LVFSVIIAQGNDEAKRLYDDLLS----NYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLK 77
LV + +A A + D LLS NYN +RP DK+TV++GL L+ L+ +N K
Sbjct: 11 LVVMMALALSGVGASVMEDTLLSVLFENYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEK 70
Query: 78 NQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIV 137
N+ MTT+V++ N W DY+L+W P Y G+ L +PS+ +W PDIV
Sbjct: 71 NEEMTTSVFL---------------NLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIV 115
Query: 138 LYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTY 197
L NN DG++E+T+ ++ + G V W+P AIY+S C I V YFPFD Q C M F S+TY
Sbjct: 116 LMNNNDGSFEITLHVNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTY 175
Query: 198 DGYTVDLKHILQGPDSDKI-DIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDII 256
D V L+H L ++ +I I+ + + +W I P+ +N + + Y D+
Sbjct: 176 DTSEVILQHALDAKGEREVKEIMINQDAFTENGQWSIEHKPSRKN---WRSDDPSYEDVT 232
Query: 257 FNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCXXXXXXXXXXXXXXAE 316
F + ++RK LFY V I+PC+ IS L++LVFYLP D+GEK+SL A+
Sbjct: 233 FYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLAD 292
Query: 317 IIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPK 376
+P TSL+VP++ YL+F MILV SV++++ VLN++ RSP TH M W+ ++FIE LP
Sbjct: 293 KVPETSLSVPIIISYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPP 352
Query: 377 ILFIQRP 383
L+IQRP
Sbjct: 353 FLWIQRP 359
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 521 WEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
W DY+L+W P Y G+ L +PS+ +W PDIVL N
Sbjct: 84 WTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMN 118
>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 522
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/379 (37%), Positives = 216/379 (56%), Gaps = 27/379 (7%)
Query: 12 MHVLFPSLTFLVFSVIIAQGNDEAKRLYDDLL--SNYNRLIRPVGNNSDKLTVKMGLKLS 69
+H ++ ++ L +S G +E +RL +DLL + YN+ +RPV +N++ + + + L LS
Sbjct: 4 IHFVYLLISCLYYSG--CSGVNEEERLINDLLIVNKYNKHVRPVKHNNEVVNIALSLTLS 61
Query: 70 QLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSE 129
LI + ++ +TTNVW++ W D++L W+ EY + L + E
Sbjct: 62 NLISLKETDETLTTNVWMDH---------------AWYDHRLTWNASEYSDISILRLRPE 106
Query: 130 HIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCV 189
IW+PDIVL NN DG Y V ++ +G V W PPAI++S C I+V YFPFD Q C
Sbjct: 107 LIWIPDIVLQNNNDGQYNVAYFCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCS 166
Query: 190 MKFGSWTYDGYTVDLKHI---LQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRN---EK 243
+KF + Y+ + + + + G D I ID + + + EW+I+ PA +N +K
Sbjct: 167 LKFTALNYNANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEIIHKPAKKNIYGDK 226
Query: 244 FYSCCEEPYPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCXXX 303
F + Y D+ F + +RRK LFY +N I PCV ISFL+ L FYLP++SGEK+S
Sbjct: 227 FPNGTN--YQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICV 284
Query: 304 XXXXXXXXXXXAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMK 363
++ +P T+L VPL+GKYL+F M LVT VV VLN +FR+P THV+
Sbjct: 285 LLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIVLNFHFRTPSTHVLS 344
Query: 364 PWVHKVFIEVLPKILFIQR 382
V ++F+E LP+IL + R
Sbjct: 345 TRVKQIFLEKLPRILHMSR 363
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 500 LARLASIHFCD--LLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
L+ L S+ D L T + W D++L W+ EY + L + E IW+PDIVL N
Sbjct: 60 LSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQN 117
>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 242 bits (617), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 130/319 (40%), Positives = 188/319 (58%), Gaps = 26/319 (8%)
Query: 42 LLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVW 101
L NYN +RP DK+TV++GL L+ L+ +N KN+ MTT+V++
Sbjct: 11 LFENYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFL-------------- 56
Query: 102 VNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGK 161
N W DY+L+W P Y G+ L +PS+ +W PDIVL NN DG++E+T+ ++ + G
Sbjct: 57 -NLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITLHVNVLVQHTGA 115
Query: 162 VVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGID 221
V W+P AIY+S C I V YFPFD Q C M F S+TYD V L+H L D I+
Sbjct: 116 VSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHAL--------DAMIN 167
Query: 222 LQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYTVNLIIPCVGISF 281
+ + +W I P+ +N + + Y D+ F + ++RK LFY V I+PC+ IS
Sbjct: 168 QDAFTENGQWSIEHKPSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISI 224
Query: 282 LSVLVFYLPSDSGEKVSLCXXXXXXXXXXXXXXAEIIPPTSLTVPLLGKYLLFTMILVTL 341
L++LVFYLP D+GEK+SL A+ +P TSL+VP++ YL+F MILV
Sbjct: 225 LAILVFYLPPDAGEKMSLSISALLALTVFLLLLADKVPETSLSVPIIISYLMFIMILVAF 284
Query: 342 SVVVTIAVLNVNFRSPVTH 360
SV++++ VLN++ RSP TH
Sbjct: 285 SVILSVVVLNLHHRSPNTH 303
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 521 WEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
W DY+L+W P Y G+ L +PS+ +W PDIVL N
Sbjct: 60 WTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMN 94
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 488
Score = 242 bits (617), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 133/349 (38%), Positives = 202/349 (57%), Gaps = 20/349 (5%)
Query: 33 DEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLK 92
+E RL + LL +Y++ I+P + V + L L+ LI +N K + +TTNV
Sbjct: 1 NEEGRLIEKLLGDYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNV------- 53
Query: 93 NQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMT 152
W+ +W DY+L W+ EY G+D + +PSE +WLPD+VL NN DG +EV
Sbjct: 54 --------WIEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYA 105
Query: 153 KAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPD 212
+++ DG + W PPAIY+S C I V YFPFD Q C + F S TY+ + V+L+ L +
Sbjct: 106 NVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQ--LSAEE 163
Query: 213 SDKID-IGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEE-PYPDIIFNITLRRKTLFYTV 270
+ ++ I ID +D+ + EW I PA +N + ++ + +IIF + ++RK LFY +
Sbjct: 164 GEVVEWIHIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYII 223
Query: 271 NLIIPCVGISFLSVLVFYLPSDS-GEKVSLCXXXXXXXXXXXXXXAEIIPPTSLTVPLLG 329
N+I PCV IS L VLV++LP+ + G+K +L A+ +P TSL VPL+G
Sbjct: 224 NIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIG 283
Query: 330 KYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKIL 378
KYL+F M + + V + VLNV+ R+P TH + + +F+E LPK L
Sbjct: 284 KYLIFVMFVSLVIVTNCVIVLNVSLRTPNTHSLSEKIKHLFLEFLPKYL 332
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 520 EWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
+W DY+L W+ EY G+D + +PSE +WLPD+VL N
Sbjct: 58 QWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLEN 93
>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 229 bits (583), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/330 (38%), Positives = 189/330 (57%), Gaps = 25/330 (7%)
Query: 33 DEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLK 92
+E RL + LL +Y++ I+P + V + L L+ LI +N K + +TTNVW
Sbjct: 1 NEEGRLIEKLLGDYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVW------ 54
Query: 93 NQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMT 152
+ +W DY+L W+ EY G+D + +PSE +WLPD+VL NN DG +EV
Sbjct: 55 ---------IEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYA 105
Query: 153 KAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPD 212
+++ DG + W PPAIY+S C I V YFPFD Q C + F S TY+ + V+L+ L +
Sbjct: 106 NVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQ--LSAEE 163
Query: 213 SDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEE-PYPDIIFNITLRRKTLFYTVN 271
GID +D+ + EW I PA +N + ++ + +IIF + ++RK LFY +N
Sbjct: 164 ------GIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIIN 217
Query: 272 LIIPCVGISFLSVLVFYLPSDS-GEKVSLCXXXXXXXXXXXXXXAEIIPPTSLTVPLLGK 330
+I PCV IS L VLV++LP+ + G+K +L A+ +P TSL VPL+GK
Sbjct: 218 IIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGK 277
Query: 331 YLLFTMILVTLSVVVTIAVLNVNFRSPVTH 360
YL+F M + + V + VLNV+ R+P TH
Sbjct: 278 YLIFVMFVSLVIVTNCVIVLNVSLRTPNTH 307
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 520 EWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
+W DY+L W+ EY G+D + +PSE +WLPD+VL N
Sbjct: 58 QWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLEN 93
>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 369
Score = 229 bits (583), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 189/333 (56%), Gaps = 34/333 (10%)
Query: 33 DEAKRLYDDLL--SNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQN 90
+E +RL +DLL + YN+ +RPV +N++ + + + L LS LI LK
Sbjct: 2 NEEERLINDLLIVNKYNKHVRPVKHNNEVVNIALSLTLSNLIS--LKET----------- 48
Query: 91 LKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTI 150
++ +TTNVW++ W D++L W+ EY + L + E IW+PDIVL NN DG Y V
Sbjct: 49 --DETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQNNNDGQYNVAY 106
Query: 151 MTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQG 210
++ +G V W PPAI++S C I+V YFPFD Q C +KF + Y+ + +
Sbjct: 107 FCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISM------ 160
Query: 211 PDSDKIDIGIDLQDYYLSVEWDIMKVPAVRN---EKFYSCCEEPYPDIIFNITLRRKTLF 267
D+ ID + + + EW+I+ PA +N +KF + Y D+ F + +RRK LF
Sbjct: 161 ------DLIIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTN--YQDVTFYLIIRRKPLF 212
Query: 268 YTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCXXXXXXXXXXXXXXAEIIPPTSLTVPL 327
Y +N I PCV ISFL+ L FYLP++SGEK+S ++ +P T+L VPL
Sbjct: 213 YVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPL 272
Query: 328 LGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTH 360
+GKYL+F M LVT VV VLN +FR+P TH
Sbjct: 273 IGKYLMFIMSLVTGVVVNCGIVLNFHFRTPSTH 305
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 496 LPSKLARLASIHFCD--LLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVL 553
L L+ L S+ D L T + W D++L W+ EY + L + E IW+PDIVL
Sbjct: 35 LSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVL 94
Query: 554 YN 555
N
Sbjct: 95 QN 96
>pdb|2QC1|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Nicotinic Acetylcholine Receptor 1 Subunit Bound To
Alpha-Bungarotoxin At 1.9 A Resolution
Length = 212
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 143/233 (61%), Gaps = 25/233 (10%)
Query: 32 NDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNL 91
++ RL L +Y+ ++RPV ++ + + V +GL+L QLI V+ NQI+TTNV L
Sbjct: 2 SEHETRLEAKLFEDYSSVVRPVEDHREIVQVTVGLQLIQLINVDEVNQIVTTNV----RL 57
Query: 92 KNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIM 151
K Q+W DY LKW+P++YGGV +H+PSE IW PD+VLYNNADG++ +
Sbjct: 58 K-----------QQWVDYNLKWNPDDYGGVKKIHIPSEKIWRPDVVLYNNADGDFAIVKF 106
Query: 152 TKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGP 211
TK +L Y G + W PPAI+KS+CEI V +FPFD Q C MK G+ TYDG V + P
Sbjct: 107 TKVLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAI-----NP 161
Query: 212 DSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCC-EEPYPDIIFNITLRR 263
+SD+ DL ++ S EW I + ++ FYSCC PY DI ++ ++R
Sbjct: 162 ESDQ----PDLSNFMESGEWVIKEARGWKHWVFYSCCPTTPYLDITYHFVMQR 210
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 511 LLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
+ T + Q+W DY LKW+P++YGGV +H+PSE IW PD+VLYN
Sbjct: 51 VTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSEKIWRPDVVLYN 95
>pdb|2KSR|A Chain A, Nmr Structures Of Tm Domain Of The N-Acetylcholine
Receptor B2 Subunit
Length = 164
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/107 (56%), Positives = 78/107 (72%)
Query: 254 DIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCXXXXXXXXXXXXX 313
++ F RRK LFYT+NLIIPCV I+ L++LVFYLPSD GEK++LC
Sbjct: 17 NLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISVLLALTVFLLL 76
Query: 314 XAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTH 360
++I+PPTSL VPL+GKYL+FTM+LVT S+V ++ VLNV+ RSP TH
Sbjct: 77 ISKIVPPTSLDVPLVGKYLMFTMVLVTFSIVTSVCVLNVHHRSPTTH 123
>pdb|1OED|B Chain B, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 250
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 81/118 (68%)
Query: 266 LFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCXXXXXXXXXXXXXXAEIIPPTSLTV 325
LFY V IIPC+ IS L++LVFYLP D+GEK+SL A+ +P TSL+V
Sbjct: 2 LFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETSLSV 61
Query: 326 PLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRP 383
P++ +YL+F MILV SV++++ VLN++ RSP TH M W+ ++FIE LP L+IQRP
Sbjct: 62 PIIIRYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRP 119
>pdb|1OED|A Chain A, Structure Of Acetylcholine Receptor Pore From Electron
Images
pdb|1OED|D Chain D, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 227
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 78/114 (68%)
Query: 266 LFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCXXXXXXXXXXXXXXAEIIPPTSLTV 325
L++ VN+IIPC+ SFL+ LVFYLP+DSGEK++L E+IP TS V
Sbjct: 2 LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 326 PLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILF 379
PL+GKY+LFTMI V S+++T+ V+N + RSP TH M WV K+FI+ +P ++F
Sbjct: 62 PLIGKYMLFTMIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMF 115
>pdb|3SQ6|A Chain A, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ6|B Chain B, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ6|C Chain C, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ6|D Chain D, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ6|E Chain E, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ6|F Chain F, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ6|G Chain G, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ6|H Chain H, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ6|I Chain I, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ6|J Chain J, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera With Its
Agonist Epibatidine
pdb|3SQ9|A Chain A, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
pdb|3SQ9|B Chain B, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
pdb|3SQ9|C Chain C, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
pdb|3SQ9|D Chain D, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
pdb|3SQ9|E Chain E, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
pdb|3SQ9|F Chain F, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
pdb|3SQ9|G Chain G, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
pdb|3SQ9|H Chain H, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
pdb|3SQ9|I Chain I, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
pdb|3SQ9|J Chain J, Crystal Structures Of The Ligand Binding Domain Of A
Pentameric Alpha7 Nicotinic Receptor Chimera
Length = 204
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 35/232 (15%)
Query: 36 KRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQI 95
++LY +L+ NYN + P + +TV L L Q+++V+ KNQ++ W+ +
Sbjct: 4 RKLYKELVKNYNPDVIPTQRDR-PVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMS----- 57
Query: 96 MTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAI 155
W D+ L+W+ EY GV + VP +W+PD+ Y NA EV A+
Sbjct: 58 ----------WTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAY-NAISKPEVLTPQLAL 106
Query: 156 LHYDGKVVWNPPAIYKSFCE---IDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPD 212
++ G V + P + C+ +D E TC +KFGSWT+ +DL+ +Q
Sbjct: 107 VNSSGHVQYLPSIRQRFSCDVSGVDTE----SGATCKLKFGSWTHHSRELDLQ--MQEA- 159
Query: 213 SDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
D+ Y ++++ V R+E+FY CC+EPYPD+ F +T R+K
Sbjct: 160 --------DISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKK 203
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 521 WEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
W D+ L+W+ EY GV + VP +W+PD+ YN
Sbjct: 58 WTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYN 92
>pdb|1OED|C Chain C, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 260
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 75/117 (64%)
Query: 266 LFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCXXXXXXXXXXXXXXAEIIPPTSLTV 325
LFY +N I PCV ISFL+ L FYLP++SGEK+S ++ +P T+L V
Sbjct: 2 LFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 326 PLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQR 382
PL+GKYL+F M LVT +V VLN +FR+P THV+ V ++F+E LP+IL + R
Sbjct: 62 PLIGKYLMFIMSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSR 118
>pdb|2LLY|A Chain A, Nmr Structures Of The Transmembrane Domains Of The Nachr
A4 Subunit
Length = 137
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 68/95 (71%)
Query: 266 LFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCXXXXXXXXXXXXXXAEIIPPTSLTV 325
LFYT+NLIIPC+ IS L+VLVFYLPS+ GEK++LC EIIP TS
Sbjct: 8 LFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLLSLTVFLLLITEIIPSTSSVS 67
Query: 326 PLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTH 360
P +G+YLLFTMI VTLS+V+T+ VLNV+ RSP TH
Sbjct: 68 PSIGEYLLFTMIFVTLSIVITVFVLNVHHRSPETH 102
>pdb|3T4M|A Chain A, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|B Chain B, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|C Chain C, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|D Chain D, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|E Chain E, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|F Chain F, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|G Chain G, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|H Chain H, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|I Chain I, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
pdb|3T4M|J Chain J, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr (Intermediate)
Length = 230
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 108/232 (46%), Gaps = 36/232 (15%)
Query: 37 RLYDDLLSNYNRL-IRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQI 95
RL DL +NR + P D LTV +G L +++ + + N++
Sbjct: 17 RLKSDL---FNRSPMYPGPTKDDPLTVTLGFTLQDIVKAD--------------SSTNEV 59
Query: 96 MTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAI 155
W Q W+ L W P EYG + + IW PDI Y++ +V A+
Sbjct: 60 DLV-YWEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSST-RPVQVLSPQNAL 117
Query: 156 LHYDGKVVWNPPAIYKSFCE---IDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPD 212
+ +DG V + P C+ +D E + TC +KFGSW+Y G+ +DLK D
Sbjct: 118 VTHDGSVQYLPAQRLSFMCDPTGVDSE----EGATCAVKFGSWSYSGFEIDLK-----TD 168
Query: 213 SDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
+D++D L YY S +++I+ R +FY CC+EPYPD+ + R +
Sbjct: 169 TDQVD----LSSYYASSKYEILSATQTRQVRFYECCKEPYPDVNLVVKFRER 216
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 487 PLTWRLPYELPSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHI 546
PLT L + L + +S + DL+ Q W+ L W P EYG + + I
Sbjct: 37 PLTVTLGFTLQDIVKADSSTNEVDLVYWEQ--QRWKLNSLMWDPNEYGNITDFRTSAADI 94
Query: 547 WLPDIVLYN 555
W PDI Y+
Sbjct: 95 WTPDITAYS 103
>pdb|2LM2|A Chain A, Nmr Structures Of The Transmembrane Domains Of The Achr B2
Subunit
Length = 137
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 70/99 (70%)
Query: 262 RRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCXXXXXXXXXXXXXXAEIIPPT 321
+ LFYT+NLIIPCV I+ L++LVFYLPSD GEK++LC ++I+PPT
Sbjct: 4 EEEPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISVLLALTVFLLLISKIVPPT 63
Query: 322 SLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTH 360
S P +G+YL+FTM+LVT S+V ++ VLNV+ RSP TH
Sbjct: 64 SSDSPSVGEYLMFTMVLVTFSIVTSVCVLNVHHRSPETH 102
>pdb|3SH1|A Chain A, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
pdb|3SH1|B Chain B, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
pdb|3SH1|C Chain C, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
pdb|3SH1|D Chain D, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
pdb|3SH1|E Chain E, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
pdb|3SH1|F Chain F, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
pdb|3SH1|G Chain G, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
pdb|3SH1|H Chain H, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
pdb|3SH1|I Chain I, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
pdb|3SH1|J Chain J, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7
Nachr
Length = 230
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 17/167 (10%)
Query: 101 WVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDG 160
W Q W+ L W P EYG + + IW PDI Y++ +V A+++ G
Sbjct: 64 WEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRP-VQVLSPQNALVNSSG 122
Query: 161 KVVWNPPAIYKSFCE---IDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKID 217
V + P C+ +D E + TC +KFGSW+Y G+ +DLK D+D++D
Sbjct: 123 HVQYLPAQRLSFMCDPTGVDSE----EGATCAVKFGSWSYGGWEIDLK-----TDTDQVD 173
Query: 218 IGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
L YY S +++I+ R+E+FY CC+EPYPD+ + R +
Sbjct: 174 ----LSSYYASSKYEILSATQTRSERFYECCKEPYPDVNLVVKFRER 216
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 519 QEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
Q W+ L W P EYG + + IW PDI Y+
Sbjct: 67 QSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYS 103
>pdb|2XNT|A Chain A, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|B Chain B, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|C Chain C, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|D Chain D, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|E Chain E, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|F Chain F, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|G Chain G, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|H Chain H, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|I Chain I, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|J Chain J, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|A Chain A, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|B Chain B, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|C Chain C, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|D Chain D, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|E Chain E, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|A Chain A, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|B Chain B, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|C Chain C, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|D Chain D, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|E Chain E, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|F Chain F, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|G Chain G, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|H Chain H, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|I Chain I, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|J Chain J, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
Length = 236
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 111/250 (44%), Gaps = 36/250 (14%)
Query: 19 LTFLVFSVIIAQGNDEAKRLYDDLLSNYNRL-IRPVGNNSDKLTVKMGLKLSQLIEVNLK 77
L LV V A RL DL +NR + P D LTV +G L +++V+
Sbjct: 7 LALLVACVGQAHSQANLMRLKSDL---FNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSS 63
Query: 78 NQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIV 137
+ V+ Q Q W+ L W P EYG + + IW PDI
Sbjct: 64 TNEVDL-VYYEQ--------------QRWKLNSLMWDPNEYGNITDFRTSAADIWTPDIT 108
Query: 138 LYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCE---IDVEYFPFDVQTCVMKFGS 194
Y++ +V A++ +DG V++ P C+ +D E + TC +KFGS
Sbjct: 109 AYSSTRP-VQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSE----EGVTCAVKFGS 163
Query: 195 WTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPD 254
W Y G+ +DLK D+D++D L YY S +++I+ R + YSCC EPY D
Sbjct: 164 WVYSGFEIDLK-----TDTDQVD----LSSYYASSKYEILSATQTRQVQHYSCCPEPYID 214
Query: 255 IIFNITLRRK 264
+ + R +
Sbjct: 215 VNLVVKFRER 224
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 18/119 (15%)
Query: 438 VVPCYGDPLPISNL-EADDIMFSPTSMCPPTQDGTDVSPTFDNQMILMPRPLTWRLPYEL 496
+V C G +NL +F+ + M P PT D+ PLT L + L
Sbjct: 10 LVACVGQAHSQANLMRLKSDLFNRSPMYP--------GPTKDD-------PLTVTLGFTL 54
Query: 497 PSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
+ +S + DL+ Q W+ L W P EYG + + IW PDI Y+
Sbjct: 55 QDIVKVDSSTNEVDLVYYEQ--QRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYS 111
>pdb|4AFG|A Chain A, Capitella Teleta Achbp In Complex With Varenicline
pdb|4AFG|B Chain B, Capitella Teleta Achbp In Complex With Varenicline
pdb|4AFG|C Chain C, Capitella Teleta Achbp In Complex With Varenicline
pdb|4AFG|D Chain D, Capitella Teleta Achbp In Complex With Varenicline
pdb|4AFG|E Chain E, Capitella Teleta Achbp In Complex With Varenicline
pdb|4AFH|A Chain A, Capitella Teleta Achbp In Complex With Lobeline
pdb|4AFH|B Chain B, Capitella Teleta Achbp In Complex With Lobeline
pdb|4AFH|C Chain C, Capitella Teleta Achbp In Complex With Lobeline
pdb|4AFH|D Chain D, Capitella Teleta Achbp In Complex With Lobeline
pdb|4AFH|E Chain E, Capitella Teleta Achbp In Complex With Lobeline
pdb|4B5D|A Chain A, Capitella Teleta Achbp In Complex With Psychonicline
(3-((2(S)-
Azetidinyl)methoxy)-5-((1s,
2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
pdb|4B5D|B Chain B, Capitella Teleta Achbp In Complex With Psychonicline
(3-((2(S)-
Azetidinyl)methoxy)-5-((1s,
2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
pdb|4B5D|C Chain C, Capitella Teleta Achbp In Complex With Psychonicline
(3-((2(S)-
Azetidinyl)methoxy)-5-((1s,
2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
pdb|4B5D|D Chain D, Capitella Teleta Achbp In Complex With Psychonicline
(3-((2(S)-
Azetidinyl)methoxy)-5-((1s,
2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
pdb|4B5D|E Chain E, Capitella Teleta Achbp In Complex With Psychonicline
(3-((2(S)-
Azetidinyl)methoxy)-5-((1s,
2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
Length = 230
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 109/234 (46%), Gaps = 28/234 (11%)
Query: 35 AKRLYDDLLSNYNRLIR---PVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNL 91
AKRL +LL+ Y +L + P ++ K+ VK GL L L + +
Sbjct: 6 AKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGF---------- 55
Query: 92 KNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIM 151
N I T V W D L+W PE + + + IW PDI L+N+ D + +
Sbjct: 56 -NSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRT 114
Query: 152 TKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGP 211
T+AI+ +G V+W PPA+ K C DV +C +FGSW Y VD+ +
Sbjct: 115 TQAIVFSNGTVLWIPPAVLKVLC-----VSQDDVDSCHFQFGSWVYSVDEVDIHFM---- 165
Query: 212 DSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKT 265
DK ++ +D Y S+E I++ A R E Y CCE Y ++ + + LR +
Sbjct: 166 -DDKAEVLLDF--YQDSLE--ILENSAQRQEVVYPCCESAYVEMKYLLALRSEN 214
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 521 WEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
W D L+W PE + + + IW PDI L+N
Sbjct: 69 WVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFN 103
>pdb|2YME|A Chain A, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
pdb|2YME|B Chain B, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
pdb|2YME|C Chain C, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
pdb|2YME|D Chain D, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
pdb|2YME|E Chain E, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
pdb|2YME|F Chain F, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
pdb|2YME|G Chain G, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
pdb|2YME|H Chain H, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
pdb|2YME|I Chain I, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
pdb|2YME|J Chain J, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Granisetron
Length = 205
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 36/232 (15%)
Query: 37 RLYDDLLSNYNRL-IRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQI 95
RL DL +NR + P D LTV +G L +++V+ + N++
Sbjct: 6 RLKSDL---FNRSPMYPGPTKDDPLTVTLGFTLQDIVKVD--------------SSTNEV 48
Query: 96 MTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAI 155
W Q W+ L W P EYG + + IW PDI Y++ +V A+
Sbjct: 49 DLV-YWERQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRP-VQVLSPQIAV 106
Query: 156 LHYDGKVVWNPPAIYKSFCE---IDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPD 212
+ +DG V++ P C+ +D E + TC +KFGSW Y G+ +DLK D
Sbjct: 107 VTHDGSVMFIPAQRLSFMCDPTGVDSE----EGVTCAVKFGSWVYSGFEIDLK-----TD 157
Query: 213 SDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
+D+ +DL YY S +++I+ R + YSCC EPY D+ + R +
Sbjct: 158 TDQ----VDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 205
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 519 QEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
Q W+ L W P EYG + + IW PDI Y+
Sbjct: 56 QRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYS 92
>pdb|2YMD|A Chain A, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|B Chain B, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|C Chain C, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|D Chain D, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|E Chain E, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|F Chain F, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|G Chain G, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|H Chain H, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|I Chain I, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
pdb|2YMD|J Chain J, Crystal Structure Of A Mutant Binding Protein
(5htbp-achbp) In Complex With Serotonin
(5-hydroxytryptamine)
Length = 212
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 40/234 (17%)
Query: 37 RLYDDLLSNYNRL-IRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQI 95
RL DL +NR + P D LTV +G L +++V+ + N++
Sbjct: 6 RLKSDL---FNRSPMYPGPTKDDPLTVTLGFTLQDIVKVD--------------SSTNEV 48
Query: 96 MTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTK-- 153
W Q W+ L W P EYG + + IW PDI Y + V +++
Sbjct: 49 DLV-YWEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAY---ESTRPVQVLSPQI 104
Query: 154 AILHYDGKVVWNPPAIYKSFCE---IDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQG 210
A++ +DG V++ P C+ +D E + TC + FGSW Y G+ +DLK
Sbjct: 105 AVVTHDGSVMFIPAQRLSFMCDPTGVDSE----EGVTCALTFGSWVYSGFEIDLK----- 155
Query: 211 PDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
D+D+ +DL YY S +++I+ R + YSCC EPY D+ + R +
Sbjct: 156 TDTDQ----VDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 205
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 519 QEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLY 554
Q W+ L W P EYG + + IW PDI Y
Sbjct: 56 QRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAY 91
>pdb|2XZ6|A Chain A, Mtset-Modified Y53c Mutant Of Aplysia Achbp
pdb|2XZ6|B Chain B, Mtset-Modified Y53c Mutant Of Aplysia Achbp
pdb|2XZ6|C Chain C, Mtset-Modified Y53c Mutant Of Aplysia Achbp
pdb|2XZ6|D Chain D, Mtset-Modified Y53c Mutant Of Aplysia Achbp
pdb|2XZ6|E Chain E, Mtset-Modified Y53c Mutant Of Aplysia Achbp
pdb|2XZ6|F Chain F, Mtset-Modified Y53c Mutant Of Aplysia Achbp
pdb|2XZ6|G Chain G, Mtset-Modified Y53c Mutant Of Aplysia Achbp
pdb|2XZ6|H Chain H, Mtset-Modified Y53c Mutant Of Aplysia Achbp
pdb|2XZ6|I Chain I, Mtset-Modified Y53c Mutant Of Aplysia Achbp
pdb|2XZ6|J Chain J, Mtset-Modified Y53c Mutant Of Aplysia Achbp
Length = 217
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 36/232 (15%)
Query: 37 RLYDDLLSNYNRL-IRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQI 95
RL DL +NR + P D LTV +G L +++V+ + V+ Q
Sbjct: 6 RLKSDL---FNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDL-VYCEQ------ 55
Query: 96 MTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAI 155
Q W+ L W P EYG + + IW PDI Y++ +V A+
Sbjct: 56 --------QRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRP-VQVLSPQIAV 106
Query: 156 LHYDGKVVWNPPAIYKSFCE---IDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPD 212
+ +DG V++ P C+ +D E + TC +KFGSW Y G+ +DLK D
Sbjct: 107 VTHDGSVMFIPAQRLSFMCDPTGVDSE----EGVTCAVKFGSWVYSGFEIDLK-----TD 157
Query: 213 SDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
+D++D L YY S +++I+ R + YSCC EPY D+ + R +
Sbjct: 158 TDQVD----LSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 205
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 487 PLTWRLPYELPSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHI 546
PLT L + L + +S + DL+ Q W+ L W P EYG + + I
Sbjct: 26 PLTVTLGFTLQDIVKVDSSTNEVDLVYCEQ--QRWKLNSLMWDPNEYGNITDFRTSAADI 83
Query: 547 WLPDIVLYN 555
W PDI Y+
Sbjct: 84 WTPDITAYS 92
>pdb|2XZ5|A Chain A, Mmts-Modified Y53c Mutant Of Aplysia Achbp In Complex With
Acetylcholine
pdb|2XZ5|B Chain B, Mmts-Modified Y53c Mutant Of Aplysia Achbp In Complex With
Acetylcholine
pdb|2XZ5|C Chain C, Mmts-Modified Y53c Mutant Of Aplysia Achbp In Complex With
Acetylcholine
pdb|2XZ5|D Chain D, Mmts-Modified Y53c Mutant Of Aplysia Achbp In Complex With
Acetylcholine
pdb|2XZ5|E Chain E, Mmts-Modified Y53c Mutant Of Aplysia Achbp In Complex With
Acetylcholine
Length = 217
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 36/232 (15%)
Query: 37 RLYDDLLSNYNRL-IRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQI 95
RL DL +NR + P D LTV +G L +++V+ + V+ Q
Sbjct: 6 RLKSDL---FNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDL-VYXEQ------ 55
Query: 96 MTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAI 155
Q W+ L W P EYG + + IW PDI Y++ +V A+
Sbjct: 56 --------QRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRP-VQVLSPQIAV 106
Query: 156 LHYDGKVVWNPPAIYKSFCE---IDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPD 212
+ +DG V++ P C+ +D E + TC +KFGSW Y G+ +DLK D
Sbjct: 107 VTHDGSVMFIPAQRLSFMCDPTGVDSE----EGVTCAVKFGSWVYSGFEIDLK-----TD 157
Query: 213 SDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
+D++D L YY S +++I+ R + YSCC EPY D+ + R +
Sbjct: 158 TDQVD----LSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 205
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 487 PLTWRLPYELPSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHI 546
PLT L + L + +S + DL+ Q W+ L W P EYG + + I
Sbjct: 26 PLTVTLGFTLQDIVKVDSSTNEVDLVYXEQ--QRWKLNSLMWDPNEYGNITDFRTSAADI 83
Query: 547 WLPDIVLYN 555
W PDI Y+
Sbjct: 84 WTPDITAYS 92
>pdb|2BR7|A Chain A, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR7|B Chain B, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR7|C Chain C, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR7|D Chain D, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR7|E Chain E, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR8|A Chain A, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2BR8|B Chain B, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2BR8|C Chain C, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2BR8|D Chain D, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2BR8|E Chain E, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2C9T|A Chain A, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|B Chain B, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|C Chain C, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|D Chain D, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|E Chain E, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|F Chain F, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|G Chain G, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|H Chain H, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|I Chain I, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|J Chain J, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2UZ6|A Chain A, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|B Chain B, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|C Chain C, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|D Chain D, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|E Chain E, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|F Chain F, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|G Chain G, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|H Chain H, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|I Chain I, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|J Chain J, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2W8F|A Chain A, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|B Chain B, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|C Chain C, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|D Chain D, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|E Chain E, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|F Chain F, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|G Chain G, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|H Chain H, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|I Chain I, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|J Chain J, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8G|A Chain A, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2W8G|B Chain B, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2W8G|C Chain C, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2W8G|D Chain D, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2W8G|E Chain E, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2XYS|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYS|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYS|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYS|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYS|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYT|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|F Chain F, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|G Chain G, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|H Chain H, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|I Chain I, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|J Chain J, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2Y7Y|A Chain A, Aplysia Californica Achbp In Apo State
pdb|2Y7Y|B Chain B, Aplysia Californica Achbp In Apo State
pdb|2Y7Y|C Chain C, Aplysia Californica Achbp In Apo State
pdb|2Y7Y|D Chain D, Aplysia Californica Achbp In Apo State
pdb|2Y7Y|E Chain E, Aplysia Californica Achbp In Apo State
pdb|2Y54|A Chain A, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y54|B Chain B, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y54|C Chain C, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y54|D Chain D, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y54|E Chain E, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y56|A Chain A, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y56|B Chain B, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y56|C Chain C, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y56|D Chain D, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y56|E Chain E, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y57|A Chain A, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y57|B Chain B, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y57|C Chain C, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y57|D Chain D, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y57|E Chain E, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y58|A Chain A, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|2Y58|B Chain B, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|2Y58|C Chain C, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|2Y58|D Chain D, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|2Y58|E Chain E, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|4AFO|A Chain A, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFO|B Chain B, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFO|C Chain C, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFO|D Chain D, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFO|E Chain E, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFT|A Chain A, Aplysia Californica Achbp In Complex With Varenicline
pdb|4AFT|B Chain B, Aplysia Californica Achbp In Complex With Varenicline
pdb|4AFT|C Chain C, Aplysia Californica Achbp In Complex With Varenicline
pdb|4AFT|D Chain D, Aplysia Californica Achbp In Complex With Varenicline
pdb|4AFT|E Chain E, Aplysia Californica Achbp In Complex With Varenicline
Length = 217
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 36/232 (15%)
Query: 37 RLYDDLLSNYNRL-IRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQI 95
RL DL +NR + P D LTV +G L +++V+ + V+ Q
Sbjct: 6 RLKSDL---FNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDL-VYYEQ------ 55
Query: 96 MTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAI 155
Q W+ L W P EYG + + IW PDI Y++ +V A+
Sbjct: 56 --------QRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRP-VQVLSPQIAV 106
Query: 156 LHYDGKVVWNPPAIYKSFCE---IDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPD 212
+ +DG V++ P C+ +D E + TC +KFGSW Y G+ +DLK D
Sbjct: 107 VTHDGSVMFIPAQRLSFMCDPTGVDSE----EGVTCAVKFGSWVYSGFEIDLK-----TD 157
Query: 213 SDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
+D++D L YY S +++I+ R + YSCC EPY D+ + R +
Sbjct: 158 TDQVD----LSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 205
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 487 PLTWRLPYELPSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHI 546
PLT L + L + +S + DL+ Q W+ L W P EYG + + I
Sbjct: 26 PLTVTLGFTLQDIVKVDSSTNEVDLVYYEQ--QRWKLNSLMWDPNEYGNITDFRTSAADI 83
Query: 547 WLPDIVLYN 555
W PDI Y+
Sbjct: 84 WTPDITAYS 92
>pdb|2BYP|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
pdb|2BYP|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
pdb|2BYP|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
pdb|2BYP|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
pdb|2BYP|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
Length = 214
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 105/232 (45%), Gaps = 36/232 (15%)
Query: 37 RLYDDLLSNYNRL-IRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQI 95
RL DL +NR + P D LTV +G L +++ + + V+ Q
Sbjct: 14 RLKSDL---FNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDL-VYYEQ------ 63
Query: 96 MTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAI 155
Q W+ L W P EYG + + IW PDI Y++ +V A+
Sbjct: 64 --------QRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSST-RPVQVLSPQIAV 114
Query: 156 LHYDGKVVWNPPAIYKSFCE---IDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPD 212
+ +DG V++ P C+ +D E + TC +KFGSW Y G+ +DLK D
Sbjct: 115 VTHDGSVMFIPAQRLSFMCDPTGVDSE----EGATCAVKFGSWVYSGFEIDLK-----TD 165
Query: 213 SDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
+D++D L YY S +++I+ R + YSCC EPY D+ + R +
Sbjct: 166 TDQVD----LSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 213
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 487 PLTWRLPYELPSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHI 546
PLT L + L + +S + DL+ Q W+ L W P EYG + + I
Sbjct: 34 PLTVTLGFTLQDIVKADSSTNEVDLV--YYEQQRWKLNSLMWDPNEYGNITDFRTSAADI 91
Query: 547 WLPDIVLYN 555
W PDI Y+
Sbjct: 92 WTPDITAYS 100
>pdb|2BYN|A Chain A, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYN|B Chain B, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYN|C Chain C, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYN|D Chain D, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYN|E Chain E, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYQ|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYQ|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYQ|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYQ|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYQ|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYR|A Chain A, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|B Chain B, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|C Chain C, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|D Chain D, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|E Chain E, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|F Chain F, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|G Chain G, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|H Chain H, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|I Chain I, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|J Chain J, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYS|A Chain A, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|B Chain B, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|C Chain C, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|D Chain D, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|E Chain E, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|F Chain F, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|G Chain G, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|H Chain H, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|I Chain I, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|J Chain J, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|3C79|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C79|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C79|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C79|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C79|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C84|A Chain A, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|3C84|B Chain B, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|3C84|C Chain C, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|3C84|D Chain D, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|3C84|E Chain E, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|2WNC|A Chain A, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNC|B Chain B, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNC|C Chain C, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNC|D Chain D, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNC|E Chain E, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNL|A Chain A, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|B Chain B, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|C Chain C, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|D Chain D, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|E Chain E, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|F Chain F, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|G Chain G, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|H Chain H, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|I Chain I, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|J Chain J, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
Length = 227
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 40/234 (17%)
Query: 37 RLYDDLLSNYNRL-IRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQI 95
RL DL +NR + P D LTV +G L +++ + + V+ Q
Sbjct: 16 RLKSDL---FNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDL-VYYEQ------ 65
Query: 96 MTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTK-- 153
Q W+ L W P EYG + + IW PDI Y++ V +++
Sbjct: 66 --------QRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSST---RPVQVLSPQI 114
Query: 154 AILHYDGKVVWNPPAIYKSFCE---IDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQG 210
A++ +DG V++ P C+ +D E + TC +KFGSW Y G+ +DLK
Sbjct: 115 AVVTHDGSVMFIPAQRLSFMCDPTGVDSE----EGATCAVKFGSWVYSGFEIDLK----- 165
Query: 211 PDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
D+D++D L YY S +++I+ R + YSCC EPY D+ + R +
Sbjct: 166 TDTDQVD----LSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 215
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 487 PLTWRLPYELPSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHI 546
PLT L + L + +S + DL+ Q W+ L W P EYG + + I
Sbjct: 36 PLTVTLGFTLQDIVKADSSTNEVDLVYYEQ--QRWKLNSLMWDPNEYGNITDFRTSAADI 93
Query: 547 WLPDIVLYN 555
W PDI Y+
Sbjct: 94 WTPDITAYS 102
>pdb|3PMZ|A Chain A, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|B Chain B, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|C Chain C, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|D Chain D, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|E Chain E, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|F Chain F, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|G Chain G, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|H Chain H, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|I Chain I, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|J Chain J, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
Length = 227
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 40/234 (17%)
Query: 37 RLYDDLLSNYNRL-IRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQI 95
RL DL +NR + P D LTV +G L +++ + + V+ Q
Sbjct: 16 RLKSDL---FNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDL-VYYEQ------ 65
Query: 96 MTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTK-- 153
Q W+ L W P EYG + + IW PDI Y++ V +++
Sbjct: 66 --------QRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSST---RPVQVLSPQI 114
Query: 154 AILHYDGKVVWNPPAIYKSFCE---IDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQG 210
A++ +DG V++ P C+ +D E + TC +KFGSW Y G+ +DLK
Sbjct: 115 AVVTHDGSVMFIPAQRLSFMCDPTGVDSE----EGATCAVKFGSWVYSGFEIDLK----- 165
Query: 211 PDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
D+D++D L YY S +++I+ R + YSCC EPY D+ + R +
Sbjct: 166 TDTDQVD----LSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 215
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 487 PLTWRLPYELPSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHI 546
PLT L + L + +S + DL+ Q W+ L W P EYG + + I
Sbjct: 36 PLTVTLGFTLQDIVKADSSTNEVDLVYYEQ--QRWKLNSLMWDPNEYGNITDFRTSAADI 93
Query: 547 WLPDIVLYN 555
W PDI Y+
Sbjct: 94 WTPDITAYS 102
>pdb|2X00|D Chain D, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
Length = 227
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 40/234 (17%)
Query: 37 RLYDDLLSNYNRL-IRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQI 95
RL DL +NR + P D LTV +G L +++ + + V+ Q
Sbjct: 16 RLKSDL---FNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDL-VYYEQ------ 65
Query: 96 MTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTK-- 153
Q W+ L W P EYG + + IW PDI Y++ V +++
Sbjct: 66 --------QRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSST---RPVQVLSPQI 114
Query: 154 AILHYDGKVVWNPPAIYKSFCE---IDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQG 210
A++ +DG V++ P C+ +D E + TC +KFGSW Y G+ +DLK
Sbjct: 115 AVVTHDGSVMFIPAQRLSFMCDPTGVDSE----EGATCAVKFGSWVYSGFEIDLK----- 165
Query: 211 PDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
D+D++D L YY S +++I+ R + YSCC EPY D+ + R +
Sbjct: 166 TDTDQVD----LSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 215
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 487 PLTWRLPYELPSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHI 546
PLT L + L + +S + DL+ Q W+ L W P EYG + + I
Sbjct: 36 PLTVTLGFTLQDIVKADSSTNEVDLVYYEQ--QRWKLNSLMWDPNEYGNITDFRTSAADI 93
Query: 547 WLPDIVLYN 555
W PDI Y+
Sbjct: 94 WTPDITAYS 102
>pdb|2PGZ|A Chain A, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PGZ|B Chain B, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PGZ|C Chain C, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PGZ|D Chain D, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PGZ|E Chain E, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PH9|A Chain A, Galanthamine Bound To An Ach-Binding Protein
pdb|2PH9|B Chain B, Galanthamine Bound To An Ach-Binding Protein
pdb|2PH9|C Chain C, Galanthamine Bound To An Ach-Binding Protein
pdb|2PH9|D Chain D, Galanthamine Bound To An Ach-Binding Protein
pdb|2PH9|E Chain E, Galanthamine Bound To An Ach-Binding Protein
pdb|4DBM|A Chain A, Aplysia Californica-Achbp In Complex With Triazole 18
pdb|4DBM|B Chain B, Aplysia Californica-Achbp In Complex With Triazole 18
pdb|4DBM|C Chain C, Aplysia Californica-Achbp In Complex With Triazole 18
pdb|4DBM|D Chain D, Aplysia Californica-Achbp In Complex With Triazole 18
pdb|4DBM|E Chain E, Aplysia Californica-Achbp In Complex With Triazole 18
Length = 230
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 40/234 (17%)
Query: 37 RLYDDLLSNYNRL-IRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQI 95
RL DL +NR + P D LTV +G L +++ + + V+ Q
Sbjct: 17 RLKSDL---FNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDL-VYYEQ------ 66
Query: 96 MTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTK-- 153
Q W+ L W P EYG + + IW PDI Y++ V +++
Sbjct: 67 --------QRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSST---RPVQVLSPQI 115
Query: 154 AILHYDGKVVWNPPAIYKSFCE---IDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQG 210
A++ +DG V++ P C+ +D E + TC +KFGSW Y G+ +DLK
Sbjct: 116 AVVTHDGSVMFIPAQRLSFMCDPTGVDSE----EGATCAVKFGSWVYSGFEIDLK----- 166
Query: 211 PDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
D+D++D L YY S +++I+ R + YSCC EPY D+ + R +
Sbjct: 167 TDTDQVD----LSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 216
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 487 PLTWRLPYELPSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHI 546
PLT L + L + +S + DL+ Q W+ L W P EYG + + I
Sbjct: 37 PLTVTLGFTLQDIVKADSSTNEVDLVYYEQ--QRWKLNSLMWDPNEYGNITDFRTSAADI 94
Query: 547 WLPDIVLYN 555
W PDI Y+
Sbjct: 95 WTPDITAYS 103
>pdb|2WN9|A Chain A, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WN9|B Chain B, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WN9|C Chain C, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WN9|D Chain D, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WN9|E Chain E, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WNJ|A Chain A, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WNJ|B Chain B, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WNJ|C Chain C, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WNJ|D Chain D, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WNJ|E Chain E, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WZY|A Chain A, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|B Chain B, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|C Chain C, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|D Chain D, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|E Chain E, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|F Chain F, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|G Chain G, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|H Chain H, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|I Chain I, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|J Chain J, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2X00|A Chain A, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
pdb|2X00|B Chain B, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
pdb|2X00|C Chain C, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
pdb|2X00|E Chain E, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
pdb|3PEO|A Chain A, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|B Chain B, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|C Chain C, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|D Chain D, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|E Chain E, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|F Chain F, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|G Chain G, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|H Chain H, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|I Chain I, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|J Chain J, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
Length = 228
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 40/234 (17%)
Query: 37 RLYDDLLSNYNRL-IRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQI 95
RL DL +NR + P D LTV +G L +++ + + V+ Q
Sbjct: 17 RLKSDL---FNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDL-VYYEQ------ 66
Query: 96 MTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTK-- 153
Q W+ L W P EYG + + IW PDI Y++ V +++
Sbjct: 67 --------QRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSST---RPVQVLSPQI 115
Query: 154 AILHYDGKVVWNPPAIYKSFCE---IDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQG 210
A++ +DG V++ P C+ +D E + TC +KFGSW Y G+ +DLK
Sbjct: 116 AVVTHDGSVMFIPAQRLSFMCDPTGVDSE----EGATCAVKFGSWVYSGFEIDLK----- 166
Query: 211 PDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
D+D++D L YY S +++I+ R + YSCC EPY D+ + R +
Sbjct: 167 TDTDQVD----LSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 216
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 487 PLTWRLPYELPSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHI 546
PLT L + L + +S + DL+ Q W+ L W P EYG + + I
Sbjct: 37 PLTVTLGFTLQDIVKADSSTNEVDLVYYEQ--QRWKLNSLMWDPNEYGNITDFRTSAADI 94
Query: 547 WLPDIVLYN 555
W PDI Y+
Sbjct: 95 WTPDITAYS 103
>pdb|3GUA|A Chain A, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|B Chain B, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|C Chain C, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|D Chain D, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|E Chain E, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|F Chain F, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|G Chain G, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|H Chain H, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|I Chain I, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|J Chain J, Sulfates Bound In The Vestibule Of Achbp
Length = 217
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 105/232 (45%), Gaps = 36/232 (15%)
Query: 37 RLYDDLLSNYNRL-IRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQI 95
RL DL +NR + P D LTV +G L +++ + + V+ Q
Sbjct: 17 RLKSDL---FNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDL-VYYEQ------ 66
Query: 96 MTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAI 155
Q W+ L W P EYG + + IW PDI Y++ +V A+
Sbjct: 67 --------QRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSST-RPVQVLSPQIAV 117
Query: 156 LHYDGKVVWNPPAIYKSFCE---IDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPD 212
+ +DG V++ P C+ +D E + TC +KFGSW Y G+ +DLK D
Sbjct: 118 VTHDGSVMFIPAQRLSFMCDPTGVDSE----EGATCAVKFGSWVYSGFEIDLK-----TD 168
Query: 213 SDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
+D++D L YY S +++I+ R + YSCC EPY D+ + R +
Sbjct: 169 TDQVD----LSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 216
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 487 PLTWRLPYELPSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHI 546
PLT L + L + +S + DL+ Q W+ L W P EYG + + I
Sbjct: 37 PLTVTLGFTLQDIVKADSSTNEVDLV--YYEQQRWKLNSLMWDPNEYGNITDFRTSAADI 94
Query: 547 WLPDIVLYN 555
W PDI Y+
Sbjct: 95 WTPDITAYS 103
>pdb|3SIO|A Chain A, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
pdb|3SIO|B Chain B, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
pdb|3SIO|C Chain C, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
pdb|3SIO|D Chain D, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
pdb|3SIO|E Chain E, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
pdb|3SIO|F Chain F, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
pdb|3SIO|G Chain G, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
pdb|3SIO|H Chain H, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
pdb|3SIO|I Chain I, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
pdb|3SIO|J Chain J, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10
Linker) Mutated To Human Alpha-7 Nachr
Length = 230
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 17/167 (10%)
Query: 101 WVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDG 160
W Q W+ L W P EYG + + IW PDI Y++ +V A+++ G
Sbjct: 64 WEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRP-VQVLSPQNALVNSSG 122
Query: 161 KVVWNPPAIYKSFCE---IDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKID 217
V + P C+ +D E + TC +KFGSW+Y G+ +DLK D+D+
Sbjct: 123 HVQYLPAQRLSFMCDPTGVDSE----EGATCAVKFGSWSYGGWEIDLK-----TDTDQ-- 171
Query: 218 IGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
+DL YY S +++I+ R + YSCC EPY D+ + R +
Sbjct: 172 --VDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER 216
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 519 QEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
Q W+ L W P EYG + + IW PDI Y+
Sbjct: 67 QSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYS 103
>pdb|1OED|E Chain E, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 260
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 1/117 (0%)
Query: 266 LFYTVNLIIPCVGISFLSVLVFYLPSDSG-EKVSLCXXXXXXXXXXXXXXAEIIPPTSLT 324
LFY +N+I PCV IS L VLV++LP+ +G +K +L A+ +P TSL
Sbjct: 2 LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLN 61
Query: 325 VPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQ 381
VPL+GKYL+F M + L V+ + VLNV+ R+P TH + + +F+ LPK L +Q
Sbjct: 62 VPLIGKYLIFVMFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQ 118
>pdb|2LKG|A Chain A, Wsa Major Conformation
pdb|2LKH|A Chain A, Wsa Minor Conformation
Length = 140
Score = 76.3 bits (186), Expect = 4e-14, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 54/91 (59%)
Query: 266 LFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCXXXXXXXXXXXXXXAEIIPPTSLTV 325
L++ VN+I PC S L+ LVFYLP+DSGEK++ E+IP TS V
Sbjct: 50 LYFVVNVIEPCKKFSELTGLVFYLPTDSGEKMTESKSVLKSLTEKLKKIVELIPSTSSAV 109
Query: 326 PLLGKYLLFTMILVTLSVVVTIAVLNVNFRS 356
PL+GKY+LFT V S+ +T V+N + RS
Sbjct: 110 PLIGKYMLFTKEFVESSIKITEEVINTHHRS 140
>pdb|2ZJU|A Chain A, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Imidacloprid
pdb|2ZJU|B Chain B, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Imidacloprid
pdb|2ZJU|C Chain C, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Imidacloprid
pdb|2ZJU|D Chain D, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Imidacloprid
pdb|2ZJU|E Chain E, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Imidacloprid
pdb|2ZJV|A Chain A, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Clothianidin
pdb|2ZJV|B Chain B, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Clothianidin
pdb|2ZJV|C Chain C, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Clothianidin
pdb|2ZJV|D Chain D, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Clothianidin
pdb|2ZJV|E Chain E, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Clothianidin
Length = 214
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 100/242 (41%), Gaps = 41/242 (16%)
Query: 29 AQGNDEAKRLYDDLLSNYNRLIRP--VGNNSDK-LTVKMGLKLSQLIEVNLKNQIMTTNV 85
A+ D A D+L N + RP + D+ + V + LK ++EVN
Sbjct: 2 AEAADRA-----DILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVN---------- 46
Query: 86 WVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGN 145
+ N++ W W D L W + D + VP +W+PD+ YN A
Sbjct: 47 ----EITNEVDVV-FWQQTTWSDRTLAW--DSSHSPDQVSVPISSLWVPDLAAYN-AISK 98
Query: 146 YEVTIMTKAILHYDGKVVWNPPAIYKSFCEI---DVEYFPFDVQTCVMKFGSWTYDGYTV 202
EV A + DG+V++ P + C++ D E TC +K GSWT+ +
Sbjct: 99 PEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGA----TCRIKIGSWTHHSREI 154
Query: 203 DLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLR 262
+ + D D + + ++I+ V +N YSCC E Y D+ ++ R
Sbjct: 155 SVDPTTENSD--------DSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFR 206
Query: 263 RK 264
+K
Sbjct: 207 KK 208
>pdb|1UX2|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|B Chain B, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|C Chain C, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|D Chain D, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|E Chain E, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|F Chain F, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|G Chain G, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|H Chain H, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|I Chain I, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|J Chain J, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
Length = 212
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 36/230 (15%)
Query: 41 DLLSNYNRLIRP--VGNNSDK-LTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMT 97
D+L N + RP + D+ + V + LK ++EVN + N++
Sbjct: 7 DILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVN--------------EITNEVDV 52
Query: 98 TNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILH 157
W W D L W+ D + VP +W+PD+ YN A EV A +
Sbjct: 53 V-FWQQTTWSDRTLAWNSSH--SPDQVSVPISSLWVPDLAAYN-AISKPEVLTPQLARVV 108
Query: 158 YDGKVVWNPPAIYKSFCEI---DVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSD 214
DG+V++ P + C++ D E TC +K GSWT+ + + + D
Sbjct: 109 SDGEVLYMPSIRQRFSCDVSGVDTESGA----TCRIKIGSWTHHSREISVDPTTENSD-- 162
Query: 215 KIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
D + + ++I+ V +N YSCC E Y D+ ++ R+K
Sbjct: 163 ------DSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 206
>pdb|1UW6|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|B Chain B, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|C Chain C, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|D Chain D, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|E Chain E, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|F Chain F, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|G Chain G, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|H Chain H, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|I Chain I, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|J Chain J, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|K Chain K, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|L Chain L, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|M Chain M, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|N Chain N, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|O Chain O, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|P Chain P, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|Q Chain Q, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|R Chain R, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|S Chain S, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|T Chain T, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
Length = 211
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 36/230 (15%)
Query: 41 DLLSNYNRLIRP--VGNNSDK-LTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMT 97
D+L N + RP + D+ + V + LK ++EVN + N++
Sbjct: 6 DILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVN--------------EITNEVDV 51
Query: 98 TNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILH 157
W W D L W+ D + VP +W+PD+ YN A EV A +
Sbjct: 52 V-FWQQTTWSDRTLAWNSSH--SPDQVSVPISSLWVPDLAAYN-AISKPEVLTPQLARVV 107
Query: 158 YDGKVVWNPPAIYKSFCEI---DVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSD 214
DG+V++ P + C++ D E TC +K GSWT+ + + + D
Sbjct: 108 SDGEVLYMPSIRQRFSCDVSGVDTESGA----TCRIKIGSWTHHSREISVDPTTENSD-- 161
Query: 215 KIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
D + + ++I+ V +N YSCC E Y D+ ++ R+K
Sbjct: 162 ------DSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 205
>pdb|1UV6|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|B Chain B, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|C Chain C, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|D Chain D, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|E Chain E, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|F Chain F, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|G Chain G, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|H Chain H, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|I Chain I, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|J Chain J, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1YI5|A Chain A, Crystal Structure Of The A-Cobratoxin-Achbp Complex
pdb|1YI5|B Chain B, Crystal Structure Of The A-Cobratoxin-Achbp Complex
pdb|1YI5|C Chain C, Crystal Structure Of The A-Cobratoxin-Achbp Complex
pdb|1YI5|D Chain D, Crystal Structure Of The A-Cobratoxin-Achbp Complex
pdb|1YI5|E Chain E, Crystal Structure Of The A-Cobratoxin-Achbp Complex
pdb|3U8J|B Chain B, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|A Chain A, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|C Chain C, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|D Chain D, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|E Chain E, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|F Chain F, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|G Chain G, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|J Chain J, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|I Chain I, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|H Chain H, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8K|A Chain A, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|B Chain B, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|C Chain C, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|D Chain D, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|E Chain E, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|F Chain F, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|G Chain G, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|H Chain H, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|I Chain I, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|J Chain J, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|K Chain K, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|L Chain L, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|M Chain M, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|N Chain N, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|O Chain O, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|P Chain P, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|Q Chain Q, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|R Chain R, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|S Chain S, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|T Chain T, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|A Chain A, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|B Chain B, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|C Chain C, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|D Chain D, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|E Chain E, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|F Chain F, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|G Chain G, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|H Chain H, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|I Chain I, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|J Chain J, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|A Chain A, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|B Chain B, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|C Chain C, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|D Chain D, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|E Chain E, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|F Chain F, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|G Chain G, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|H Chain H, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|I Chain I, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|J Chain J, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|K Chain K, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|L Chain L, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|M Chain M, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|N Chain N, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|O Chain O, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|P Chain P, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|Q Chain Q, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|R Chain R, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|S Chain S, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|T Chain T, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8N|A Chain A, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|B Chain B, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|C Chain C, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|D Chain D, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|E Chain E, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|F Chain F, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|G Chain G, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|H Chain H, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|I Chain I, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|J Chain J, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|K Chain K, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|L Chain L, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|M Chain M, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|N Chain N, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|O Chain O, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|P Chain P, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|Q Chain Q, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|R Chain R, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|S Chain S, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|T Chain T, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3ZDG|A Chain A, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|B Chain B, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|C Chain C, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|D Chain D, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|E Chain E, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|F Chain F, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|G Chain G, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|H Chain H, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|I Chain I, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|J Chain J, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|K Chain K, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|L Chain L, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|M Chain M, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|N Chain N, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|O Chain O, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|P Chain P, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|Q Chain Q, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|R Chain R, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|S Chain S, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|T Chain T, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDH|A Chain A, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|B Chain B, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|C Chain C, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|D Chain D, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|E Chain E, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|F Chain F, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|G Chain G, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|H Chain H, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|I Chain I, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|J Chain J, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
Length = 210
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 36/230 (15%)
Query: 41 DLLSNYNRLIRP--VGNNSDK-LTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMT 97
D+L N + RP + D+ + V + LK ++EVN + N++
Sbjct: 5 DILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVN--------------EITNEVDV 50
Query: 98 TNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILH 157
W W D L W+ D + VP +W+PD+ YN A EV A +
Sbjct: 51 V-FWQQTTWSDRTLAWNSSH--SPDQVSVPISSLWVPDLAAYN-AISKPEVLTPQLARVV 106
Query: 158 YDGKVVWNPPAIYKSFCEI---DVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSD 214
DG+V++ P + C++ D E TC +K GSWT+ + + + D
Sbjct: 107 SDGEVLYMPSIRQRFSCDVSGVDTESGA----TCRIKIGSWTHHSREISVDPTTENSD-- 160
Query: 215 KIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
D + + ++I+ V +N YSCC E Y D+ ++ R+K
Sbjct: 161 ------DSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 204
>pdb|4ALX|A Chain A, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|B Chain B, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|C Chain C, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|D Chain D, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|E Chain E, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|F Chain F, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|G Chain G, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|H Chain H, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|I Chain I, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|J Chain J, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
Length = 229
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 36/230 (15%)
Query: 41 DLLSNYNRLIRP--VGNNSDK-LTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMT 97
D+L N + RP + D+ + V + LK ++EVN + N++
Sbjct: 24 DILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVN--------------EITNEVDV 69
Query: 98 TNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILH 157
W W D L W+ D + VP +W+PD+ YN A EV A +
Sbjct: 70 V-FWQQTTWSDRTLAWNSSH--SPDQVSVPISSLWVPDLAAYN-AISKPEVLTPQLARVV 125
Query: 158 YDGKVVWNPPAIYKSFCEI---DVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSD 214
DG+V++ P + C++ D E TC +K GSWT+ + + + D
Sbjct: 126 SDGEVLYMPSIRQRFSCDVSGVDTESGA----TCRIKIGSWTHHSREISVDPTTENSD-- 179
Query: 215 KIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
D + + ++I+ V +N YSCC E Y D+ ++ R+K
Sbjct: 180 ------DSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 223
>pdb|1I9B|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1I9B|B Chain B, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1I9B|C Chain C, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1I9B|D Chain D, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1I9B|E Chain E, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
Length = 217
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 36/230 (15%)
Query: 41 DLLSNYNRLIRP--VGNNSDK-LTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMT 97
D+L N + RP + D+ + V + LK ++EVN + N++
Sbjct: 12 DILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVN--------------EITNEVDV 57
Query: 98 TNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILH 157
W W D L W+ D + VP +W+PD+ YN A EV A +
Sbjct: 58 V-FWQQTTWSDRTLAWNSSH--SPDQVSVPISSLWVPDLAAYN-AISKPEVLTPQLARVV 113
Query: 158 YDGKVVWNPPAIYKSFCEI---DVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSD 214
DG+V++ P + C++ D E TC +K GSWT+ + + + D
Sbjct: 114 SDGEVLYMPSIRQRFSCDVSGVDTESGA----TCRIKIGSWTHHSREISVDPTTENSD-- 167
Query: 215 KIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
D + + ++I+ V +N YSCC E Y D+ ++ R+K
Sbjct: 168 ------DSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 211
>pdb|4AOD|A Chain A, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|B Chain B, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|C Chain C, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|D Chain D, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|E Chain E, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
Length = 205
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 13/174 (7%)
Query: 90 NLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVT 149
+++N + +W W+D L W E+ L VP IW PDI ++++ G E+
Sbjct: 44 DVENDEVDIGLWTTLVWKDRCLNWF-NEFTSFKELTVPIAEIWTPDIFIFDSV-GAPEIF 101
Query: 150 IMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQ 209
A + DG V + P + C + V TC +K GSWT+ + L+
Sbjct: 102 SDKLARVSQDGTVTYVPQLKVRLSCPLADLKLETGV-TCSLKSGSWTHSTQELTLE---- 156
Query: 210 GPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRR 263
++ +DL DY + ++ N K Y CC E Y D + T R+
Sbjct: 157 ------VNAKVDLGDYASDTRFQLLNATQQVNRKQYPCCPETYEDTTLSFTFRK 204
>pdb|2BJ0|A Chain A, Crystal Structure Of Achbp From Bulinus Truncatus Revals
The Conserved Structural Scaffold And Sites Of Variation
In Nicotinic Acetylcholine Receptors
pdb|2BJ0|B Chain B, Crystal Structure Of Achbp From Bulinus Truncatus Revals
The Conserved Structural Scaffold And Sites Of Variation
In Nicotinic Acetylcholine Receptors
pdb|2BJ0|C Chain C, Crystal Structure Of Achbp From Bulinus Truncatus Revals
The Conserved Structural Scaffold And Sites Of Variation
In Nicotinic Acetylcholine Receptors
pdb|2BJ0|D Chain D, Crystal Structure Of Achbp From Bulinus Truncatus Revals
The Conserved Structural Scaffold And Sites Of Variation
In Nicotinic Acetylcholine Receptors
pdb|2BJ0|E Chain E, Crystal Structure Of Achbp From Bulinus Truncatus Revals
The Conserved Structural Scaffold And Sites Of Variation
In Nicotinic Acetylcholine Receptors
Length = 203
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 12/144 (8%)
Query: 122 DTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCE-IDVEY 180
D + +P +W PD+ YN A E+ + ++ DG V++ P + C+ I+V+
Sbjct: 71 DQVSLPVSKMWTPDLSFYN-AIAAPELLSADRVVVSKDGSVIYVPSQRVRFTCDLINVDT 129
Query: 181 FPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVR 240
P TC +K GSWT+D L +G +++ +Y+ S ++D++
Sbjct: 130 EPG--ATCRIKVGSWTHDNKQFALITGEEGV--------VNIAEYFDSPKFDLLSATQSL 179
Query: 241 NEKFYSCCEEPYPDIIFNITLRRK 264
N K YSCCE Y DI R+K
Sbjct: 180 NRKKYSCCENMYDDIEITFAFRKK 203
>pdb|4AOE|A Chain A, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
pdb|4AOE|B Chain B, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
pdb|4AOE|C Chain C, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
pdb|4AOE|D Chain D, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
pdb|4AOE|E Chain E, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
Length = 205
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 13/165 (7%)
Query: 99 NVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHY 158
+W+ W+D L WS E + L +PS++IWLP I +YN+ G + ++
Sbjct: 53 GLWLVISWKDRSLSWS-NECTTFNELTLPSKYIWLPHIEVYNSI-GKPGIHSDQLVRVYK 110
Query: 159 DGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDI 218
DG V + P + C ++ C +KFG WTYD + L Q
Sbjct: 111 DGTVTFVPQYTIRFSCALE-NVTTEQGAACTLKFGPWTYDVRDLVLDESQQ--------- 160
Query: 219 GIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRR 263
+DL Y + +++ N+K Y CC + + DI +T ++
Sbjct: 161 -VDLTTYAGGERFQLIEAKQKVNKKTYPCCPQSFEDIELRVTFKK 204
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 521 WEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
W+D L WS E + L +PS++IWLP I +YN
Sbjct: 60 WKDRSLSWS-NECTTFNELTLPSKYIWLPHIEVYN 93
>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RI5|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RIA|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIF|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate
Length = 347
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 107/261 (40%), Gaps = 28/261 (10%)
Query: 33 DEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLK 92
++K L S Y+ +RP +N + V + + L + ++++ VN
Sbjct: 1 SDSKILAHLFTSGYDFRVRPPTDNGGPVVVSVNMLLRTISKIDV----------VNMEYS 50
Query: 93 NQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEH-IWLPDIVLYNNADGNYEVTIM 151
Q+ + + W D +L + + G D + + H IW+PD + N Y+ TI
Sbjct: 51 AQLT-----LRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPD-TFFPNEKQAYKHTID 104
Query: 152 TKAIL---HYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHIL 208
+L H DG V+++ C + ++Y+P DVQ C + S+ Y ++
Sbjct: 105 KPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKE 164
Query: 209 QGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFY 268
P K+ + L + L+ +V N YSC I L+R+ FY
Sbjct: 165 HSPLQLKVGLSSSLPSFQLT-NTSTTYCTSVTNTGIYSCLRT-------TIQLKREFSFY 216
Query: 269 TVNLIIPCVGISFLSVLVFYL 289
+ L IP + +S + F+
Sbjct: 217 LLQLYIPSCMLVIVSWVSFWF 237
>pdb|2K58|B Chain B, Nmr Structures Of The First Transmembrane Domain Of The
Neuronal Acetylcholine Receptor Beta 2 Subunit
Length = 35
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 262 RRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEK 296
RRK LFYT+NLIIPCV I+ L++LVFYLPSD GEK
Sbjct: 1 RRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEK 35
>pdb|3EI0|A Chain A, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|B Chain B, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|C Chain C, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|D Chain D, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|E Chain E, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
Length = 317
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 28/208 (13%)
Query: 92 KNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN--NADGNYEVT 149
K + N +++ W+D +L + P GV E IW+P+I N NA V
Sbjct: 33 KAETFKVNAFLSLSWKDRRLAFDPVR-SGVRVKTYEPEAIWIPEIRFVNVENARDADVVD 91
Query: 150 IMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQ 209
I DG V + + +D +PFD QT + + I++
Sbjct: 92 ISVSP----DGTVQYLERFSARVLSPLDFRRYPFDSQT--------------LHIYLIVR 133
Query: 210 GPDSDKIDIGIDLQ------DYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRR 263
D+ I + +DL+ D +L+ WDI AV ++ + + + + + R
Sbjct: 134 SVDTRNIVLAVDLEKVGKNDDVFLT-GWDIESFTAVVKPANFALEDRLESKLDYQLRISR 192
Query: 264 KTLFYTVNLIIPCVGISFLSVLVFYLPS 291
+ Y N+I+P + I F+S F+ S
Sbjct: 193 QYFSYIPNIILPMLFILFISWTAFWSTS 220
>pdb|3TLS|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
Length = 321
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 28/208 (13%)
Query: 92 KNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN--NADGNYEVT 149
K + N +++ W+D +L + P GV E IW+P+I N NA V
Sbjct: 37 KAETFKVNAFLSLSWKDRRLAFDPVR-SGVRVKTYEPEAIWIPEIRFVNVENARDADVVD 95
Query: 150 IMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQ 209
I DG V + + +D +PFD QT + + I++
Sbjct: 96 ISVSP----DGTVQYLERFSARVLSPLDFRRYPFDSQT--------------LHIYLIVR 137
Query: 210 GPDSDKIDIGIDLQ------DYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRR 263
D+ I + +DL+ D +L+ WDI AV ++ + + + + + R
Sbjct: 138 SVDTRNIVLAVDLEKVGKNDDVFLT-GWDIESFTAVVKPANFALEDRLESKLDYQLRISR 196
Query: 264 KTLFYTVNLIIPCVGISFLSVLVFYLPS 291
+ Y N+I+P + I F+S F+ S
Sbjct: 197 QYFSYIPNIILPMLFILFISWTAFWSTS 224
>pdb|2XQ9|A Chain A, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|B Chain B, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|C Chain C, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|D Chain D, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|E Chain E, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
Length = 317
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 28/208 (13%)
Query: 92 KNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN--NADGNYEVT 149
K + N +++ W+D +L + P GV E IW+P+I N NA V
Sbjct: 33 KAETFKVNAFLSLSWKDRRLAFDPVR-SGVRVKTYEPEAIWIPEIRFVNVENARDADVVD 91
Query: 150 IMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQ 209
I DG V + + +D +PFD QT + + I++
Sbjct: 92 ISVSP----DGTVQYLERFSARVLSPLDFRRYPFDSQT--------------LHIYLIVR 133
Query: 210 GPDSDKIDIGIDLQ------DYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRR 263
D+ I + +DL+ D +L+ WDI AV ++ + + + + + R
Sbjct: 134 SVDTRNIVLAVDLEKVGKNDDVFLT-GWDIESFTAVVKPANFALEDRLESKLDYQLRISR 192
Query: 264 KTLFYTVNLIIPCVGISFLSVLVFYLPS 291
+ Y N+I+P + I F+S F+ S
Sbjct: 193 QYFSYIPNIILPMLFILFISWTAFWSTS 220
>pdb|4IL9|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4ILA|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILB|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
Length = 320
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 28/208 (13%)
Query: 92 KNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN--NADGNYEVT 149
K + N +++ W+D +L + P GV E IW+P+I N NA V
Sbjct: 37 KAETFKVNAFLSLSWKDRRLAFDPVR-SGVRVKTYEPEAIWIPEIRFVNVENARDADVVD 95
Query: 150 IMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQ 209
I DG V + + +D +PFD QT + + I++
Sbjct: 96 ISVSP----DGTVQYLERFSARVLSPLDFRRYPFDSQT--------------LHIYLIVR 137
Query: 210 GPDSDKIDIGIDLQ------DYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRR 263
D+ I + +DL+ D +L+ WDI AV ++ + + + + + R
Sbjct: 138 SVDTRNIVLAVDLEKVGKNDDVFLT-GWDIESFTAVVKPANFALEDRLESKLDYQLRISR 196
Query: 264 KTLFYTVNLIIPCVGISFLSVLVFYLPS 291
+ Y N+I+P + I F+S F+ S
Sbjct: 197 QYFSYIPNIILPMLFILFISWTAFWSTS 224
>pdb|3TLT|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
Length = 321
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 28/208 (13%)
Query: 92 KNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN--NADGNYEVT 149
K + N +++ W+D +L + P GV E IW+P+I N NA V
Sbjct: 37 KAETFKVNAFLSLSWKDRRLAFDPVR-SGVRVKTYEPEAIWIPEIRFVNVENARDADVVD 95
Query: 150 IMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQ 209
I DG V + + +D +PFD QT + + I++
Sbjct: 96 ISVSP----DGTVQYLERFSARVLSPLDFRRYPFDSQT--------------LHIYLIVR 137
Query: 210 GPDSDKIDIGIDLQ------DYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRR 263
D+ I + +DL+ D +L+ WDI AV ++ + + + + + R
Sbjct: 138 SVDTRNIVLAVDLEKVGKNDDVFLT-GWDIESFTAVVKPANFALEDRLESKLDYQLRISR 196
Query: 264 KTLFYTVNLIIPCVGISFLSVLVFYLPS 291
+ Y N+I+P + I F+S F+ S
Sbjct: 197 QYFSYIPNIILPMLFILFISWTAFWSTS 224
>pdb|3EHZ|A Chain A, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|B Chain B, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|C Chain C, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|D Chain D, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|E Chain E, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|2XQ3|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ4|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ5|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ6|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ7|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ8|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQA|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|4F8H|A Chain A, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|B Chain B, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|C Chain C, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|D Chain D, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|E Chain E, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
Length = 317
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 28/208 (13%)
Query: 92 KNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN--NADGNYEVT 149
K + N +++ W+D +L + P GV E IW+P+I N NA V
Sbjct: 33 KAETFKVNAFLSLSWKDRRLAFDPVR-SGVRVKTYEPEAIWIPEIRFVNVENARDADVVD 91
Query: 150 IMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQ 209
I DG V + + +D +PFD QT + + I++
Sbjct: 92 ISVSP----DGTVQYLERFSARVLSPLDFRRYPFDSQT--------------LHIYLIVR 133
Query: 210 GPDSDKIDIGIDLQ------DYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRR 263
D+ I + +DL+ D +L+ WDI AV ++ + + + + + R
Sbjct: 134 SVDTRNIVLAVDLEKVGKNDDVFLT-GWDIESFTAVVKPANFALEDRLESKLDYQLRISR 192
Query: 264 KTLFYTVNLIIPCVGISFLSVLVFYLPS 291
+ Y N+I+P + I F+S F+ S
Sbjct: 193 QYFSYIPNIILPMLFILFISWTAFWSTS 220
>pdb|3EAM|A Chain A, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|B Chain B, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|C Chain C, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|D Chain D, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|E Chain E, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|4HFI|A Chain A, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|B Chain B, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|C Chain C, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|D Chain D, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|E Chain E, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4IL4|A Chain A, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|B Chain B, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|C Chain C, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|D Chain D, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|E Chain E, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
Length = 317
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 28/208 (13%)
Query: 92 KNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN--NADGNYEVT 149
K + N +++ W+D +L + P GV E IW+P+I N NA V
Sbjct: 33 KAETFKVNAFLSLSWKDRRLAFDPVR-SGVRVKTYEPEAIWIPEIRFVNVENARDADVVD 91
Query: 150 IMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQ 209
I DG V + + +D +PFD QT + + I++
Sbjct: 92 ISVSP----DGTVQYLERFSARVLSPLDFRRYPFDSQT--------------LHIYLIVR 133
Query: 210 GPDSDKIDIGIDLQ------DYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRR 263
D+ I + +DL+ D +L+ WDI AV ++ + + + + + R
Sbjct: 134 SVDTRNIVLAVDLEKVGKNDDVFLT-GWDIESFTAVVKPANFALEDRLESKLDYQLRISR 192
Query: 264 KTLFYTVNLIIPCVGISFLSVLVFYLPS 291
+ Y N+I+P + I F+S F+ S
Sbjct: 193 QYFSYIPNIILPMLFILFISWTAFWSTS 220
>pdb|3P4W|A Chain A, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|B Chain B, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|C Chain C, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|D Chain D, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|E Chain E, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|A Chain A, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|B Chain B, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|C Chain C, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|D Chain D, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|E Chain E, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
Length = 318
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 28/208 (13%)
Query: 92 KNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN--NADGNYEVT 149
K + N +++ W+D +L + P GV E IW+P+I N NA V
Sbjct: 33 KAETFKVNAFLSLSWKDRRLAFDPVR-SGVRVKTYEPEAIWIPEIRFVNVENARDADVVD 91
Query: 150 IMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQ 209
I DG V + + +D +PFD QT + + I++
Sbjct: 92 ISVSP----DGTVQYLERFSARVLSPLDFRRYPFDSQT--------------LHIYLIVR 133
Query: 210 GPDSDKIDIGIDLQ------DYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRR 263
D+ I + +DL+ D +L+ WDI AV ++ + + + + + R
Sbjct: 134 SVDTRNIVLAVDLEKVGKNDDVFLT-GWDIESFTAVVKPANFALEDRLESKLDYQLRISR 192
Query: 264 KTLFYTVNLIIPCVGISFLSVLVFYLPS 291
+ Y N+I+P + I F+S F+ S
Sbjct: 193 QYFSYIPNIILPMLFILFISWTAFWSTS 220
>pdb|4ILC|A Chain A, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|B Chain B, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|C Chain C, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|D Chain D, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|E Chain E, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
Length = 320
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 28/208 (13%)
Query: 92 KNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN--NADGNYEVT 149
K + N +++ W+D +L + P GV E IW+P+I N NA V
Sbjct: 37 KAETFKVNAFLSLSWKDRRLAFDPVR-SGVRVKTYEPEAIWIPEIRFVNVENARDADVVD 95
Query: 150 IMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQ 209
I DG V + + +D +PFD QT + + I++
Sbjct: 96 ISVSP----DGTVQYLERFSARVLSPLDFRRYPFDSQT--------------LHIYLIVR 137
Query: 210 GPDSDKIDIGIDLQ------DYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRR 263
D+ I + +DL+ D +L+ WDI AV ++ + + + + + R
Sbjct: 138 SVDTRNIVLAVDLEKVGKNDDVFLT-GWDIESFTAVVKPANFALEDRLESKLDYQLRISR 196
Query: 264 KTLFYTVNLIIPCVGISFLSVLVFYLPS 291
+ Y N+I+P + I F+S F+ S
Sbjct: 197 QYFSYIPNIILPMLFILFISWTAFWSTS 224
>pdb|3LSV|A Chain A, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|B Chain B, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|C Chain C, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|D Chain D, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|E Chain E, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
Length = 317
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 28/208 (13%)
Query: 92 KNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN--NADGNYEVT 149
K + N +++ W+D +L + P GV E IW+P+I N NA V
Sbjct: 33 KAETFKVNAFLSLSWKDRRLAFDPVR-SGVRVKTYEPEAIWIPEIRFVNVENARDADVVD 91
Query: 150 IMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQ 209
I DG V + + +D +PFD QT + + I++
Sbjct: 92 ISVSP----DGTVQYLERFSARVLSPLDFRRYPFDSQT--------------LHIYLIVR 133
Query: 210 GPDSDKIDIGIDLQ------DYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRR 263
D+ I + +DL+ D +L+ WDI AV ++ + + + + + R
Sbjct: 134 SVDTRNIVLAVDLEKVGKNDDVFLT-GWDIESFTAVVKPANFALEDRLESKLDYQLRISR 192
Query: 264 KTLFYTVNLIIPCVGISFLSVLVFYLPS 291
+ Y N+I+P + I F+S F+ S
Sbjct: 193 QYFSYIPNIILPMLFILFISWTAFWSTS 220
>pdb|3TLU|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU8|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
Length = 321
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 84/206 (40%), Gaps = 28/206 (13%)
Query: 94 QIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN--NADGNYEVTIM 151
+ N +++ W+D +L + P GV E IW+P+I N NA V I
Sbjct: 39 ETFKVNAFLSLSWKDRRLAFDPVR-SGVRVKTYEPEAIWIPEIRFVNVENARDADVVDIS 97
Query: 152 TKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGP 211
DG V + + +D +PFD QT + + I++
Sbjct: 98 VSP----DGTVQYLERFSARVLSPLDFRRYPFDSQT--------------LHIYLIVRSV 139
Query: 212 DSDKIDIGIDLQ------DYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKT 265
D+ I + +DL+ D +L+ WDI AV ++ + + + + + R+
Sbjct: 140 DTRNIVLAVDLEKVGKNDDVFLT-GWDIESFTAVVKPANFALEDRLESKLDYQLRISRQY 198
Query: 266 LFYTVNLIIPCVGISFLSVLVFYLPS 291
Y N+I+P + I F+S F+ S
Sbjct: 199 FSYIPNIILPMLFILFISWTAFWSTS 224
>pdb|3TLW|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3UU4|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UUB|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|F Chain F, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|G Chain G, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|H Chain H, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|I Chain I, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|J Chain J, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
Length = 321
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 84/206 (40%), Gaps = 28/206 (13%)
Query: 94 QIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN--NADGNYEVTIM 151
+ N +++ W+D +L + P GV E IW+P+I N NA V I
Sbjct: 39 ETFKVNAFLSLSWKDRRLAFDPVR-SGVRVKTYEPEAIWIPEIRFVNVENARDADVVDIS 97
Query: 152 TKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGP 211
DG V + + +D +PFD QT + + I++
Sbjct: 98 VSP----DGTVQYLERFSARVLSPLDFRRYPFDSQT--------------LHIYLIVRSV 139
Query: 212 DSDKIDIGIDLQ------DYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKT 265
D+ I + +DL+ D +L+ WDI AV ++ + + + + + R+
Sbjct: 140 DTRNIVLAVDLEKVGKNDDVFLT-GWDIESFTAVVKPANFALEDRLESKLDYQLRISRQY 198
Query: 266 LFYTVNLIIPCVGISFLSVLVFYLPS 291
Y N+I+P + I F+S F+ S
Sbjct: 199 FSYIPNIILPMLFILFISWTAFWSTS 224
>pdb|3UU3|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU5|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
Length = 321
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 84/206 (40%), Gaps = 28/206 (13%)
Query: 94 QIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN--NADGNYEVTIM 151
+ N +++ W+D +L + P GV E IW+P+I N NA V I
Sbjct: 39 ETFKVNAFLSLSWKDRRLAFDPVR-SGVRVKTYEPEAIWIPEIRFVNVENARDADVVDIS 97
Query: 152 TKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGP 211
DG V + + +D +PFD QT + + I++
Sbjct: 98 VSP----DGTVQYLERFSARVLSPLDFRRYPFDSQT--------------LHIYLIVRSV 139
Query: 212 DSDKIDIGIDLQ------DYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKT 265
D+ I + +DL+ D +L+ WDI AV ++ + + + + + R+
Sbjct: 140 DTRNIVLAVDLEKVGKNDDVFLT-GWDIESFTAVVKPANFALEDRLESKLDYQLRISRQY 198
Query: 266 LFYTVNLIIPCVGISFLSVLVFYLPS 291
Y N+I+P + I F+S F+ S
Sbjct: 199 FSYIPNIILPMLFILFISWTAFWSTS 224
>pdb|3TLV|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3UU6|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
Length = 321
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 84/206 (40%), Gaps = 28/206 (13%)
Query: 94 QIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN--NADGNYEVTIM 151
+ N +++ W+D +L + P GV E IW+P+I N NA V I
Sbjct: 39 ETFKVNAFLSLSWKDRRLAFDPVR-SGVRVKTYEPEAIWIPEIRFVNVENARDADVVDIS 97
Query: 152 TKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGP 211
DG V + + +D +PFD QT + + I++
Sbjct: 98 VSP----DGTVQYLERFSARVLSPLDFRRYPFDSQT--------------LHIYLIVRSV 139
Query: 212 DSDKIDIGIDLQ------DYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKT 265
D+ I + +DL+ D +L+ WDI AV ++ + + + + + R+
Sbjct: 140 DTRNIVLAVDLEKVGKNDDVFLT-GWDIESFTAVVKPANFALEDRLESKLDYQLRISRQY 198
Query: 266 LFYTVNLIIPCVGISFLSVLVFYLPS 291
Y N+I+P + I F+S F+ S
Sbjct: 199 FSYIPNIILPMLFILFISWTAFWSTS 224
>pdb|1KC4|B Chain B, Nmr Structural Analysis Of The Complex Formed Between
Alpha- Bungarotoxin And The Principal Alpha-Neurotoxin
Binding Sequence On The Alpha7 Subunit Of A Neuronal
Nicotinic Acetylcholine Receptor
pdb|1KL8|B Chain B, Nmr Structural Analysis Of The Complex Formed Between
Alpha- Bungarotoxin And The Principal Alpha-Neurotoxin
Binding Sequence On The Alpha7 Subunit Of A Neuronal
Nicotinic Acetylcholine Receptor
Length = 20
Score = 35.8 bits (81), Expect = 0.062, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 236 VPAVRNEKFYSCCEEPYPD 254
+P R E FY CC+EPYPD
Sbjct: 1 IPGKRTESFYECCKEPYPD 19
>pdb|2YKS|A Chain A, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|B Chain B, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|C Chain C, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|D Chain D, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|E Chain E, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|F Chain F, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|G Chain G, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|H Chain H, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|I Chain I, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|J Chain J, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
Length = 321
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 153 KAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTV---DLKHILQ 209
+ +L DG+V++N + ++D FPFD Q V++ ++Y+ + D++ +
Sbjct: 91 RLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTE 150
Query: 210 GPDSDKIDIGIDLQDYYLSVEWDIMK----VPAVRNEKFYSC--CEEPYPDIIFNITLRR 263
D+++ID EW I K + +R + S + + I I R
Sbjct: 151 NIDNEEID------------EWWIRKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVR 198
Query: 264 KTLFYTVNLIIPCVGISFLSVLVFYLPSDS 293
+Y + I+P I S VF+L S S
Sbjct: 199 NPSYYLWSFILPLGLIIAASWSVFWLESFS 228
>pdb|2VL0|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
Length = 321
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 153 KAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTV---DLKHILQ 209
+ +L DG+V++N + ++D FPFD Q V++ ++Y+ + D++ +
Sbjct: 91 RLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTE 150
Query: 210 GPDSDKIDIGIDLQDYYLSVEWDIMK----VPAVRNEKFYSC--CEEPYPDIIFNITLRR 263
D+++ID EW I K + +R + S + + I I R
Sbjct: 151 NIDNEEID------------EWWIRKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVR 198
Query: 264 KTLFYTVNLIIPCVGISFLSVLVFYLPSDS 293
+Y + I+P I S VF+L S S
Sbjct: 199 NPSYYLWSFILPLGLIIAASWSVFWLESFS 228
>pdb|3UQ4|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
Length = 324
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 22/151 (14%)
Query: 153 KAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTV---DLKHILQ 209
+ +L DG+V++N + ++D FPFD Q V++ ++Y+ + D++ +
Sbjct: 93 RLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTE 152
Query: 210 GPDSDKIDIGIDLQDYYLSVEWDIM-----KVPAVRNEKFYSC--CEEPYPDIIFNITLR 262
D+++ID EW I + +R + S + + I I
Sbjct: 153 NIDNEEID------------EWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAV 200
Query: 263 RKTLFYTVNLIIPCVGISFLSVLVFYLPSDS 293
R +Y + I+P I S VF+L S S
Sbjct: 201 RNPSYYLWSFILPLGLIIAASWSVFWLESFS 231
>pdb|3RQU|A Chain A, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|B Chain B, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|C Chain C, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|D Chain D, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|E Chain E, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|F Chain F, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|G Chain G, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|H Chain H, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|I Chain I, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|J Chain J, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQW|A Chain A, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|B Chain B, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|C Chain C, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|D Chain D, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|E Chain E, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|F Chain F, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|G Chain G, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|H Chain H, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|I Chain I, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|J Chain J, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|2YN6|A Chain A, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|B Chain B, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|C Chain C, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|D Chain D, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|E Chain E, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
Length = 322
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 22/151 (14%)
Query: 153 KAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTV---DLKHILQ 209
+ +L DG+V++N + ++D FPFD Q V++ ++Y+ + D++ +
Sbjct: 91 RLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTE 150
Query: 210 GPDSDKIDIGIDLQDYYLSVEWDIM-----KVPAVRNEKFYSC--CEEPYPDIIFNITLR 262
D+++ID EW I + +R + S + + I I
Sbjct: 151 NIDNEEID------------EWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAV 198
Query: 263 RKTLFYTVNLIIPCVGISFLSVLVFYLPSDS 293
R +Y + I+P I S VF+L S S
Sbjct: 199 RNPSYYLWSFILPLGLIIAASWSVFWLESFS 229
>pdb|3UQ5|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
Length = 324
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 22/151 (14%)
Query: 153 KAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTV---DLKHILQ 209
+ +L DG+V++N + ++D FPFD Q V++ ++Y+ + D++ +
Sbjct: 93 RLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTE 152
Query: 210 GPDSDKIDIGIDLQDYYLSVEWDIM-----KVPAVRNEKFYSC--CEEPYPDIIFNITLR 262
D+++ID EW I + +R + S + + I I
Sbjct: 153 NIDNEEID------------EWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAV 200
Query: 263 RKTLFYTVNLIIPCVGISFLSVLVFYLPSDS 293
R +Y + I+P I S VF+L S S
Sbjct: 201 RNPSYYLWSFILPLGLIIAASWSVFWLESFS 231
>pdb|4A97|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A98|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|2YOE|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|3ZKR|A Chain A, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|B Chain B, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|C Chain C, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|D Chain D, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|E Chain E, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|F Chain F, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|G Chain G, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|H Chain H, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|I Chain I, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|J Chain J, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
Length = 307
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 22/151 (14%)
Query: 153 KAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTV---DLKHILQ 209
+ +L DG+V++N + ++D FPFD Q V++ ++Y+ + D++ +
Sbjct: 81 RLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTE 140
Query: 210 GPDSDKIDIGIDLQDYYLSVEWDIM-----KVPAVRNEKFYSC--CEEPYPDIIFNITLR 262
D+++ID EW I + +R + S + + I I
Sbjct: 141 NIDNEEID------------EWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAV 188
Query: 263 RKTLFYTVNLIIPCVGISFLSVLVFYLPSDS 293
R +Y + I+P I S VF+L S S
Sbjct: 189 RNPSYYLWSFILPLGLIIAASWSVFWLESFS 219
>pdb|3UQ7|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
Length = 324
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 22/151 (14%)
Query: 153 KAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTV---DLKHILQ 209
+ +L DG+V++N + ++D FPFD Q V++ ++Y+ + D++ +
Sbjct: 93 RLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTE 152
Query: 210 GPDSDKIDIGIDLQDYYLSVEWDIM-----KVPAVRNEKFYSC--CEEPYPDIIFNITLR 262
D+++ID EW I + +R + S + + I I
Sbjct: 153 NIDNEEID------------EWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAV 200
Query: 263 RKTLFYTVNLIIPCVGISFLSVLVFYLPSDS 293
R +Y + I+P I S VF+L S S
Sbjct: 201 RNPSYYLWSFILPLGLIIAASWSVFWLESFS 231
>pdb|1WUF|A Chain A, Crystal Structure Of Protein Gi:16801725, Member Of
Enolase Superfamily From Listeria Innocua Clip11262
pdb|1WUF|B Chain B, Crystal Structure Of Protein Gi:16801725, Member Of
Enolase Superfamily From Listeria Innocua Clip11262
Length = 393
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 68 LSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVP 127
L+++I ++ + ++ + QN++ + N +V+Q +E KLK +P + D V
Sbjct: 139 LAKMIGATKESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAPNK----DIQFVE 194
Query: 128 SEHIWLPDIVLYNNADGNY--EVTIMTKAILHYDGKVVWNP 166
+ P + L +A+ Y E ++ K + YD +++ P
Sbjct: 195 AVRKSFPKLSLMADANSAYNREDFLLLKELDQYDLEMIEQP 235
>pdb|1DAB|A Chain A, The Structure Of Bordetella Pertussis Virulence Factor
P.69 Pertactin
Length = 539
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 424 LPPSRYDVSNTGSTVVPCYGDPLPISNLEADDIMF 458
LPPSR + +T T VP G P +S L A ++
Sbjct: 162 LPPSRVVLRDTNVTAVPASGAPAAVSVLGASELTL 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,735,964
Number of Sequences: 62578
Number of extensions: 777659
Number of successful extensions: 1440
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1255
Number of HSP's gapped (non-prelim): 115
length of query: 555
length of database: 14,973,337
effective HSP length: 104
effective length of query: 451
effective length of database: 8,465,225
effective search space: 3817816475
effective search space used: 3817816475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)