Query psy7429
Match_columns 555
No_of_seqs 377 out of 2274
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 18:06:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3646|consensus 100.0 1.6E-76 3.5E-81 600.5 20.7 345 18-384 10-354 (486)
2 TIGR00860 LIC Cation transport 100.0 1.2E-67 2.6E-72 568.3 32.5 325 33-386 29-356 (459)
3 KOG3645|consensus 100.0 9E-65 1.9E-69 544.1 32.1 330 34-385 29-361 (449)
4 KOG3643|consensus 100.0 5.8E-53 1.3E-57 427.2 23.0 294 34-356 34-333 (459)
5 KOG3644|consensus 100.0 4.3E-49 9.2E-54 416.4 22.6 298 32-355 37-341 (457)
6 KOG3642|consensus 100.0 8.4E-45 1.8E-49 370.3 17.7 290 34-353 43-338 (466)
7 PF02931 Neur_chan_LBD: Neurot 100.0 3.7E-40 8E-45 322.1 21.6 215 35-265 1-217 (217)
8 PF02932 Neur_chan_memb: Neuro 99.8 6.8E-21 1.5E-25 183.0 -3.2 120 272-391 1-121 (237)
9 KOG3646|consensus 99.7 3.2E-18 6.9E-23 175.5 3.1 76 476-555 40-117 (486)
10 KOG3645|consensus 99.6 2.3E-15 5.1E-20 162.2 6.4 75 477-555 44-120 (449)
11 TIGR00860 LIC Cation transport 99.5 8.5E-14 1.8E-18 150.6 7.5 74 477-555 45-120 (459)
12 PF02931 Neur_chan_LBD: Neurot 99.2 2.8E-11 6.1E-16 118.1 7.2 75 477-555 15-91 (217)
13 KOG3643|consensus 97.0 0.00038 8.2E-09 72.6 3.1 70 473-555 50-124 (459)
14 KOG3644|consensus 96.5 0.005 1.1E-07 66.4 6.8 75 477-555 55-134 (457)
15 KOG3642|consensus 94.8 0.03 6.4E-07 59.2 4.3 71 479-555 60-132 (466)
16 PF14494 DUF4436: Domain of un 94.6 0.39 8.5E-06 47.9 11.4 148 176-347 97-250 (256)
17 PF07234 DUF1426: Protein of u 32.0 89 0.0019 26.2 4.4 46 361-406 37-86 (117)
18 COG5633 Predicted periplasmic 30.2 58 0.0013 28.4 3.2 13 98-110 70-82 (123)
19 PF09771 Tmemb_18A: Transmembr 27.6 1E+02 0.0022 27.4 4.3 52 319-371 52-103 (125)
20 PRK15396 murein lipoprotein; P 21.3 1.7E+02 0.0036 23.8 4.2 28 14-41 6-33 (78)
No 1
>KOG3646|consensus
Probab=100.00 E-value=1.6e-76 Score=600.50 Aligned_cols=345 Identities=47% Similarity=0.907 Sum_probs=331.6
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeE
Q psy7429 18 SLTFLVFSVIIAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMT 97 (555)
Q Consensus 18 ~l~~~~~~~~~~~~~~~~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~ 97 (555)
++.+++.......++.+|.||+++|++|||+..||+.|.++|++|++++.+.||.++|||+|.++
T Consensus 10 ll~ll~~~~~~v~~s~~E~rL~~dL~~nYn~leRPV~N~Sepl~V~~~~~lqQIidVDEKnQvl~--------------- 74 (486)
T KOG3646|consen 10 LLFILLICIKQVMGSVAEYRLLTDLLENYNPLERPVANESEPLQVKLGVFLQQIIDVDEKNQVLS--------------- 74 (486)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCccCCCccccCcCEEEEeeeeEeccCCCcccccchh---------------
Confidence 44444455456778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecEEEecCCCCCCCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeEEecccc
Q psy7429 98 TNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEID 177 (555)
Q Consensus 98 ~~~~l~~~W~D~RL~Wnp~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~~d 177 (555)
+++|++++|+|.+|+|||++||||+.+++|.++||+||+.+||+++++|+.+..+++.+++||.|.|.+|..++++|.+|
T Consensus 75 ~naWl~y~W~D~~LrW~pseygnI~dvR~p~~~iWkPDVLLYNSade~FDsTy~tN~Vv~~tG~v~~vPPGIfk~sCkiD 154 (486)
T KOG3646|consen 75 VNAWLQYQWNDYKLRWDPSEYGNITDIRFPGGNIWKPDVLLYNSADEQFDSTYKTNYVVYSTGSVLWVPPGIFKSSCKID 154 (486)
T ss_pred hhhhhheeehhhhhccCHHHhCCceeeccCCccccCCceeccccccccCCCcceeeEEEccCCeeeecCCceeeeeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccccceeeeecccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCCCCCeEEE
Q psy7429 178 VEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIF 257 (555)
Q Consensus 178 l~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~~ys~l~~ 257 (555)
.++||||+|.|.++||||+|++..++++...+.. ++|++.|..||||++.+.++.+.+..|.||+++|++++|
T Consensus 155 ItwFPFD~Q~C~mKFGSWTY~G~~lDL~~~~~~g-------~~Dls~yi~NGEW~Ll~~pakr~~~~y~cC~epY~dv~F 227 (486)
T KOG3646|consen 155 ITWFPFDDQVCYLKFGSWTYAGILLDLRIDDEDG-------GIDLSTYIPNGEWDLLGTPAKREEKTYDCCPEPYPDVTF 227 (486)
T ss_pred EEEecccccEEEEEeeeEEEcceeeeeeeccccC-------CcchhhcccCCceeeccccccceeeecccCCCCcceeEE
Confidence 9999999999999999999999999998755432 478999999999999999999999999999999999999
Q ss_pred EEEEEeeccceeeeeccchhhhhhheeeEEeccCCCCCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHH
Q psy7429 258 NITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMI 337 (555)
Q Consensus 258 ~l~l~R~~~~y~~~liiP~~li~~ls~~sF~lp~~s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~ 337 (555)
++++|||..||.+|+++||++++++++++|-+|+|++||++|.+|++|+..+|+..+++..|++|+.+|+++.||..||+
T Consensus 228 ~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~gEKitL~iTilLsvc~FL~mvse~~PpTSeaVPllg~fFsc~m~ 307 (486)
T KOG3646|consen 228 YLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDAGEKITLQITILLSVCFFLTMVSEMTPPTSEAVPLLGAFFSCCMF 307 (486)
T ss_pred EEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccccceeeeeeehHHHHHHHHHHHHhhcCCccccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhheeeeeecCCCCCCCCHHHHHHHHhhccceeeecCCC
Q psy7429 338 LVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPA 384 (555)
Q Consensus 338 l~~lsll~tv~v~~l~~r~~~~~~~p~w~r~~f~~~l~~~l~~~~p~ 384 (555)
++++|++.|++|+|+|+|++.+|+|++|.|++|++++|-+|+|+||.
T Consensus 308 iv~~SvvfTv~vLn~h~R~p~~h~m~p~~r~vfL~wlpwll~M~rP~ 354 (486)
T KOG3646|consen 308 IVAASVVFTVIVLNLHHRTPETHEMSPWTRSVFLEWLPWLLRMKRPF 354 (486)
T ss_pred HHHhhheeEEEEEeeeccCccccccCHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999993
No 2
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=100.00 E-value=1.2e-67 Score=568.28 Aligned_cols=325 Identities=34% Similarity=0.631 Sum_probs=301.0
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCCC
Q psy7429 33 DEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLK 112 (555)
Q Consensus 33 ~~~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL~ 112 (555)
+.+++|+++||++||+.+||+ +.++|+.|++++.+.+|.++||++|.++ +++|++|+|+|+||+
T Consensus 29 ~~~~~L~~~Ll~~Yd~~~RPv-~~~~~v~V~~~i~l~~i~~vde~~q~~t---------------~~~wl~~~W~D~rL~ 92 (459)
T TIGR00860 29 EVERKLLDELLKNYDARVRPV-FGGPPVTVSFNLFLRSIMDVDEKNMDYT---------------TNIWLRQEWTDERLQ 92 (459)
T ss_pred hHHHHHHHHHHhcCCCCcCCC-CCCCCEEEEEEEEEEEecccccccceEE---------------EeeeeeeEEeCCccC
Confidence 467899999999999999999 8889999999999999999999999999 999999999999999
Q ss_pred CCCCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEe--ccEEEEeCCceeEEeccccccCCCccccccee
Q psy7429 113 WSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHY--DGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVM 190 (555)
Q Consensus 113 Wnp~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~--dG~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l 190 (555)
|||++|+|++.++++.++||+||++++|++++.++.....++.|.+ ||+|.|.+|+.+++.|+||+++||||+|+|+|
T Consensus 93 Wnp~~y~~i~~i~~~~~~IW~PDi~l~N~~~~~~~~~~~~~~~v~~~~~G~V~~~~~~~~~~~C~~d~~~FPfD~Q~C~l 172 (459)
T TIGR00860 93 WNPEEYPGVTLVRTPDDSIWVPDIFFYNEKDARFHGITMTNVLVRIHPNGSVLYSPRITLTLACPMDLRNFPFDVQNCSL 172 (459)
T ss_pred CCCccCCCceeccccccccccCcEEeecCccccccccccCceEEEEcCCCcEEEecCceEEecccceeccCCCCCccccE
Confidence 9999999999999999999999999999999887665555666655 99999999999999999999999999999999
Q ss_pred eeecccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCCCCCeEEEEEEEEeeccceee
Q psy7429 191 KFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYTV 270 (555)
Q Consensus 191 ~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~~ys~l~~~l~l~R~~~~y~~ 270 (555)
+|+||+|+++++++.+..+. ....+.+.|..++||++.+....+.. .+.||+++|+++.++++++|+++||++
T Consensus 173 ~fgSw~y~~~~i~l~~~~~~------~v~~~~~~~~~~~eW~l~~~~~~~~~-~~~~~~~~y~~l~~~~~l~R~~~~y~~ 245 (459)
T TIGR00860 173 KFESWGYTTNDIKLEWKEQG------AVQVDDSLFISLPEFELLGVYGTRYC-TSETNTGEYPCLTFSFVLRRRPLYYLL 245 (459)
T ss_pred EEhhhccccceEEEEECCCC------ceEechhhccccCceEEEeeeeeeeE-ecccCCCCcCeEEEEEEEEEcccceee
Confidence 99999999999999885431 12345667778999999997766665 678899999999999999999999999
Q ss_pred eeccchhhhhhheeeEEeccCC-CCCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHHHHHHHhhe
Q psy7429 271 NLIIPCVGISFLSVLVFYLPSD-SGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAV 349 (555)
Q Consensus 271 ~liiP~~li~~ls~~sF~lp~~-s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsll~tv~v 349 (555)
++++||+++++++|++||+|++ +++|++|++|+||++++|+..+++.+|++| ++|+||+|+++||+++++++++++++
T Consensus 246 ~l~iP~~li~~ls~~sF~Lp~~a~~eRi~L~it~lLs~~vf~~~v~~~lP~~S-~vpli~~y~~~~~~~v~~sli~tv~V 324 (459)
T TIGR00860 246 QLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMTTFSSGVRESLPAVS-YVKAIDVYFAVCMAFVFLALLETAFV 324 (459)
T ss_pred eehHHHHHHHHHhheeEecCCCCCCCcEEEEEEHHHHHHHHHHHHHhhCCCcc-hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 699999999999999999999999999999 99999999999999999999999999
Q ss_pred eeeeecCCCCCCCCHHHHHHHHhhccceeeecCCCCC
Q psy7429 350 LNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAKD 386 (555)
Q Consensus 350 ~~l~~r~~~~~~~p~w~r~~f~~~l~~~l~~~~p~~~ 386 (555)
+++|+|++..++ |++|++.+|++++|++|.++
T Consensus 325 ~~~~~~~~~~~~-----r~~~l~~l~~~l~~~~~~~~ 356 (459)
T TIGR00860 325 NYVHHKDPAQGK-----RHLLLERCAWRLCKQEPGED 356 (459)
T ss_pred eeEEccCCCCCc-----eehHHhhchHHhcccCcccc
Confidence 999999887665 99999999999999999753
No 3
>KOG3645|consensus
Probab=100.00 E-value=9e-65 Score=544.09 Aligned_cols=330 Identities=59% Similarity=1.101 Sum_probs=313.3
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCCCC
Q psy7429 34 EAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKW 113 (555)
Q Consensus 34 ~~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL~W 113 (555)
.+++|.++|+++|++.+||+.+.+++++|++++.+.|+.++||++|.++ +++|+.++|+|+||+|
T Consensus 29 ~~~~l~~~l~~~Y~~~vrPv~~~~~~v~V~~~~~l~qii~VdE~~q~~t---------------~~~wl~~~W~D~~L~W 93 (449)
T KOG3645|consen 29 AEERLLVDLFDKYNKLVRPVKNSSDPVTVNFGLVLYQIIEVDEKNQIMT---------------TNVWLKQSWTDERLSW 93 (449)
T ss_pred HHHHHHHHHhhcccccCCccCCCCCcEEEEEEEEEEEEEeeccccceEE---------------EEEEeeeEEeccCccc
Confidence 6899999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeEEeccccccCCCcccccceeeee
Q psy7429 114 SPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFG 193 (555)
Q Consensus 114 np~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~ 193 (555)
||++|||++.+++|.++||+||++++|++++++.....+++.++++|+|+|.+++.+++.|++|+++||||.|+|.++|+
T Consensus 94 np~~~~~I~~i~vp~~~IW~Pdi~l~N~~~~~~~~~~~~~v~v~~~G~V~~~~p~i~~s~C~idv~~FPfD~Q~C~i~f~ 173 (449)
T KOG3645|consen 94 DPSDYGGITKIRVPSSKIWLPDIVLYNNADGDFEVEDLTNVLVTYTGEVLWYPPAIYKSSCPIDVTYFPFDVQNCSIKFG 173 (449)
T ss_pred ChHHcCCceEEEecHHHcCcCcEEEEecccccccccccceEEEEECCEEEEEcceEEEeecccccccCCCcceeEeEEEe
Confidence 99999999999999999999999999999999887777789999999999999999999999999999999999999999
Q ss_pred cccccCceEE-EEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCCCCCeEEEEEEEEeeccceeeee
Q psy7429 194 SWTYDGYTVD-LKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYTVNL 272 (555)
Q Consensus 194 S~~y~~~~v~-l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~~ys~l~~~l~l~R~~~~y~~~l 272 (555)
||+|++.+++ +....+.. ..++.+|.+++||++.+.+..+.+..|.|+++.|++++|++++||++.||++++
T Consensus 174 sw~~~~~~i~~~~~~~~~~-------~~~~~~~~~n~eW~l~~~~~~~~~~~~~~~~~~~~~i~f~l~irRkplyY~v~l 246 (449)
T KOG3645|consen 174 SWTYDGSEVDGLDLNAQTI-------EVDLSDFIENSEWELLSVTVVREEKKYDCCPGPYSDITFTITIRRKPLYYTVNL 246 (449)
T ss_pred ccccCccccceeeeccccc-------cCCHHHcCCCCcEEEEeeeeEEeecccCCCCCceeEEEEEEEEEeccceEEEeh
Confidence 9999999887 54432210 167889999999999999999999888888999999999999999999999999
Q ss_pred ccchhhhhhheeeEEeccCCCC-CeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHHHHHHHhheee
Q psy7429 273 IIPCVGISFLSVLVFYLPSDSG-EKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLN 351 (555)
Q Consensus 273 iiP~~li~~ls~~sF~lp~~s~-~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsll~tv~v~~ 351 (555)
++||++++++++++||+|.+++ +|++|++++||+++++++++++.+|++|..+|+|++|++++|+++++++++++++++
T Consensus 247 iiP~~lis~l~il~fflp~~~~~eki~L~it~Ll~~tv~ll~vs~~~P~ts~~iPLig~y~~~~m~~~~~sv~~tv~i~~ 326 (449)
T KOG3645|consen 247 IIPCFLISFLSILGFFLPSDSGTEKVTLGITVLLAMTVFLLLVSDKMPPTSSVIPLIGKYLLFTMVLVTISVVVTVVILN 326 (449)
T ss_pred hhhHHHHHHHHhheEEccCCCCCceEEEEHHHHHHHHHHHHHHHhhcCCccCcchHHHHHHHHHHHHHHHHHHHheeEEe
Confidence 9999999999999999998775 999999999999999999999999999977999999999999999999999999999
Q ss_pred eeecCCCCC-CCCHHHHHHHHhhccceeeecCCCC
Q psy7429 352 VNFRSPVTH-VMKPWVHKVFIEVLPKILFIQRPAK 385 (555)
Q Consensus 352 l~~r~~~~~-~~p~w~r~~f~~~l~~~l~~~~p~~ 385 (555)
+|+|++..+ ++|+|++++|..++|+.++++++.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (449)
T KOG3645|consen 327 LHHRSPTTHPPMPPWVRRVFLEKLPRLLLMSRPED 361 (449)
T ss_pred eecccCCCCCCCchHHHHHHHHHHHHHHhcCCccc
Confidence 999999888 8999999999999999999999987
No 4
>KOG3643|consensus
Probab=100.00 E-value=5.8e-53 Score=427.24 Aligned_cols=294 Identities=24% Similarity=0.394 Sum_probs=260.2
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCCCC
Q psy7429 34 EAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKW 113 (555)
Q Consensus 34 ~~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL~W 113 (555)
..++.++.|+++||.++||.. +++|+.|.+.+.+.+|..|.|.++.+| ++++++|.|+||||+|
T Consensus 34 ~~~~~ld~l~~~yd~~lRP~f-GG~pv~Vgi~i~VaSI~~vSEV~MDyT---------------lt~y~rq~W~D~RLay 97 (459)
T KOG3643|consen 34 LVSSVLDRLLNGYDYRLRPNF-GGPPVDVGITIHVASIDAVSEVNMDYT---------------LTMYLRQTWRDPRLAY 97 (459)
T ss_pred hHHHHHHHHhhcCceecCCCC-CCCCeEEEEEEEEeeechhccccchhh---------------hhhhhhhhhcCccccc
Confidence 468899999999999999955 468999999999999999999998888 9999999999999999
Q ss_pred CCCCCCCeeEeeeCC---CCeecCceeeccccCCCceeeeee--ceEEEeccEEEEeCCceeEEeccccccCCCcccccc
Q psy7429 114 SPEEYGGVDTLHVPS---EHIWLPDIVLYNNADGNYEVTIMT--KAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTC 188 (555)
Q Consensus 114 np~e~~~i~~i~v~~---~~IW~Pdi~~~N~~~~~~~~~~~~--~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~Q~C 188 (555)
+ .++++.+.+.. ++||.||.++-|++.+-++..... -+++++||+|.+..|++.++.|+||+++||+|+|+|
T Consensus 98 ~---~~~~~slTl~~~~~~~LWvPDTff~N~KkSf~H~~T~~N~~lRl~~dGtVlys~RlT~Ta~C~MDL~~fPmD~Q~C 174 (459)
T KOG3643|consen 98 S---SKNIDSLTLDVRYVDKLWVPDTFFPNSKKSFFHDVTTHNSLLRLHPDGTVLYSIRLTVTAACPMDLKLFPMDSQNC 174 (459)
T ss_pred C---CCCCceEEEchhhhhccccCceecccCcccccceeeecceEEEEcCCCeEEEEEEEEEEEecccccccCCCcccce
Confidence 8 46678888875 799999999999988887755433 378999999999999999999999999999999999
Q ss_pred eeeeecccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCCCCCeEEEEEEEEeeccce
Q psy7429 189 VMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFY 268 (555)
Q Consensus 189 ~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~~ys~l~~~l~l~R~~~~y 268 (555)
+|.++||+|+.+++.+.|..+++. ......++++ +..+.+.........+. .+.|+++.+.|.++|+.+||
T Consensus 175 ~LeiESYGYt~~DI~y~W~~g~~a-v~~~e~i~Lp------qFti~~~~~~s~~~~~s--TG~Y~RL~l~F~l~Rnigf~ 245 (459)
T KOG3643|consen 175 KLEIESYGYTTDDIEYYWSKGDNA-VKGDEKIELP------QFTITEYHVTSRLVSFS--TGNYSRLSLSFQLRRNIGFY 245 (459)
T ss_pred eEEEEecccccccEEEEEcCCCcc-ccceeeeecc------ceEEEEEEEEEEEEEEc--cccceeEEEEEEEEeeccEE
Confidence 999999999999999999865432 1112234444 44677766666665555 68999999999999999999
Q ss_pred eeeeccchhhhhhheeeEEeccCCC-CCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHHHHHHHh
Q psy7429 269 TVNLIIPCVGISFLSVLVFYLPSDS-GEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTI 347 (555)
Q Consensus 269 ~~~liiP~~li~~ls~~sF~lp~~s-~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsll~tv 347 (555)
++++++|+++++++||++||+..++ ++|+++|||++|+|+.+.....+.||++| |+.+||+|+.+|++++|+|+++.+
T Consensus 246 ilQ~y~PS~LiVilSWVSFWin~~a~pARv~lGITTVLTMTTl~t~~n~slPrvS-YVKAiDiYL~vCFvfVF~sLLEYA 324 (459)
T KOG3643|consen 246 ILQTYIPSTLIVILSWVSFWINRDASPARVALGITTVLTMTTLMTSTNESLPRVS-YVKAIDVYLGVCFVFVFLSLLEYA 324 (459)
T ss_pred EEeeecchhhhhHHhHhHhhhccccchhheeeceehHHhHHHHHhhhhccCCCcc-ceeeehhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999997 89999999999999999999999999999 999999999999999999999999
Q ss_pred heeeeeecC
Q psy7429 348 AVLNVNFRS 356 (555)
Q Consensus 348 ~v~~l~~r~ 356 (555)
+|.++..+.
T Consensus 325 ~V~Y~~~~~ 333 (459)
T KOG3643|consen 325 AVNYMFKRR 333 (459)
T ss_pred HHHHHHHhH
Confidence 998887543
No 5
>KOG3644|consensus
Probab=100.00 E-value=4.3e-49 Score=416.43 Aligned_cols=298 Identities=19% Similarity=0.349 Sum_probs=259.3
Q ss_pred ChhHHHHHHHHHhc-CCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecC
Q psy7429 32 NDEAKRLYDDLLSN-YNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYK 110 (555)
Q Consensus 32 ~~~~~~L~~~Ll~~-Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~R 110 (555)
...+++++++||.+ ||+..||..+++.|+.|.+.+.+..+.+++|.++.++ ++++++++|.|||
T Consensus 37 ~~~~~~il~~LL~~~Yd~~~~P~~~~~~pv~V~v~i~vq~i~~ise~~mdf~---------------~di~~~~~W~DpR 101 (457)
T KOG3644|consen 37 CTSDTDILDRLLGRNYDKRRPPNGKGGGPVSVSVEITVQSISSISEITMDFE---------------VDIYFRERWQDPR 101 (457)
T ss_pred ccChHHHHHHHhhccCccccCCCccCCCceEEEEEEEEEeecceecccceEE---------------eeeeeeeeEeCcc
Confidence 44578999999998 9999999988889999999999999999999999888 9999999999999
Q ss_pred CCCC-CC-CCCCeeEeeeC-CCCeecCceeeccccCCCceeeeeec--eEEEeccEEEEeCCceeEEeccccccCCCccc
Q psy7429 111 LKWS-PE-EYGGVDTLHVP-SEHIWLPDIVLYNNADGNYEVTIMTK--AILHYDGKVVWNPPAIYKSFCEIDVEYFPFDV 185 (555)
Q Consensus 111 L~Wn-p~-e~~~i~~i~v~-~~~IW~Pdi~~~N~~~~~~~~~~~~~--v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~ 185 (555)
|+++ .+ ++.+.....+. .++||.||+++.|++...++.....+ +.|++||+|.+..|++++.+|+||+.+||+|+
T Consensus 102 L~~~~~~~~~~~~~~~~l~~~~~iW~Pd~~F~NsK~a~~H~~~~~N~ll~I~pnGtV~~~~Ri~l~~~C~m~L~~fP~D~ 181 (457)
T KOG3644|consen 102 LAYNALKFDHILPCKLNLSLKQKIWTPDTFFANSKSAEFHKSTKPNVLLMIFPNGTVWYSYRISLTLPCNMDLSKFPMDS 181 (457)
T ss_pred ccccccCcccccccccccccCCceecCceeeecccceeeecCCCCceEEEEecCCeEEEEEEEEEeeceeeehhhCCCcc
Confidence 9998 33 33322222322 26799999999999999888766555 57999999999999999999999999999999
Q ss_pred ccceeeeecccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCCCCCeEEEEEEEEeec
Q psy7429 186 QTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKT 265 (555)
Q Consensus 186 Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~~ys~l~~~l~l~R~~ 265 (555)
|+|.+.++||+|+.+++.+.|...+ +.....++.+.+| ++.+....+....|+ .+.|++++++++++|+.
T Consensus 182 Q~C~l~~eSy~Yn~~~v~~~W~~~~--pv~~~~~i~LPdf------~l~~~~~~~~~~~y~--~G~~scL~v~~~f~R~~ 251 (457)
T KOG3644|consen 182 QECKLQLESYAYNTDDVRLEWKEWN--PVQVKKDIKLPDF------SLPSFSTEKCTGSYT--TGVYSCLRVTFTFKRRY 251 (457)
T ss_pred ceeeEEEEEeccccceEEEEecCCC--CcccccCccCCce------eccceeecccccccc--CcceEEEEEEEEEEEee
Confidence 9999999999999999999997654 2222334445544 555554444545555 78999999999999999
Q ss_pred cceeeeeccchhhhhhheeeEEeccCCC-CCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHHHHH
Q psy7429 266 LFYTVNLIIPCVGISFLSVLVFYLPSDS-GEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVV 344 (555)
Q Consensus 266 ~~y~~~liiP~~li~~ls~~sF~lp~~s-~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsll 344 (555)
+||+++.++|+.+++++||++|||++++ ++|++||+|+||++++....+...||++| |+.+||+|+++||++++++++
T Consensus 252 g~yllQ~YiPT~l~ViiSWvSFWLd~~A~PARv~LgvtsLLtLttq~~~i~~~LP~VS-YvKAIDVWm~~C~~FIF~sLl 330 (457)
T KOG3644|consen 252 GYYLLQTYIPTLLIVIISWVSFWLDPKAVPARVTLGVTSLLTLTTQSGGIRRNLPKVS-YVKAIDVWMGVCMTFIFGSLL 330 (457)
T ss_pred hhhhhHHHhhhHhhhhhhhhheecCCCcccceEEehHHHHHHHHHHhcchhhcCCchh-hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 89999999999999999999999999999 899999999999999999999
Q ss_pred HHhheeeeeec
Q psy7429 345 VTIAVLNVNFR 355 (555)
Q Consensus 345 ~tv~v~~l~~r 355 (555)
|.++|..+.+|
T Consensus 331 E~A~V~~~~~~ 341 (457)
T KOG3644|consen 331 ELAVVNYVGRR 341 (457)
T ss_pred HHHHHHHhhhc
Confidence 99999888765
No 6
>KOG3642|consensus
Probab=100.00 E-value=8.4e-45 Score=370.28 Aligned_cols=290 Identities=20% Similarity=0.384 Sum_probs=252.3
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCCCC
Q psy7429 34 EAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKW 113 (555)
Q Consensus 34 ~~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL~W 113 (555)
+..++++.||++||+.+||..+. .|+.|++.+++..+.-+++.++.++ ++++++|.|.|.||++
T Consensus 43 ~~T~iLn~lL~~YD~~lRP~~g~-~pt~v~~di~V~S~GPVSd~~meyt---------------id~~FrQ~W~D~RL~f 106 (466)
T KOG3642|consen 43 DVTLILNNLLRGYDNKLRPDIGS-KPTEVETDIYVRSMGPVSDSDMEYT---------------IDCFFRQTWVDDRLKF 106 (466)
T ss_pred hHHHHHHHHHHhhhcccCCCCCC-CCcEEEEEEEEeecccccccCceEE---------------EEEEEEEeehhhhhcc
Confidence 46999999999999999997765 9999999999999999999998888 9999999999999999
Q ss_pred CCCCCCCeeEeeeC---CCCeecCceeeccccCCCceeeeee--ceEEEeccEEEEeCCceeEEeccccccCCCcccccc
Q psy7429 114 SPEEYGGVDTLHVP---SEHIWLPDIVLYNNADGNYEVTIMT--KAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTC 188 (555)
Q Consensus 114 np~e~~~i~~i~v~---~~~IW~Pdi~~~N~~~~~~~~~~~~--~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~Q~C 188 (555)
| +-.+.+.+. ..+||+||.++.|++++..+....+ -++|..||+|.|..|.+..+.|+|++.+||+|.|.|
T Consensus 107 ~----~~~~~L~Ln~~m~~kiW~PDTfF~NgkkS~~H~iT~pN~l~Ri~~dG~vlyt~RlTi~A~C~m~l~~fPMD~haC 182 (466)
T KOG3642|consen 107 N----GPQEALPLNSLMLSKIWIPDTFFRNGKKSYAHNITTPNKLVRIYIDGTVLYTMRLTIPAECPMHLARFPMDSHAC 182 (466)
T ss_pred c----CcchhhccchhhhcCcccCCcccccCcccceeeccCCCceEEEeECCcceEEEEEeecccCcchhhcCCCCcccC
Confidence 8 223334433 3799999999999998887654433 368999999999999999999999999999999999
Q ss_pred eeeeecccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCCCCCeEEEEEEEEeeccce
Q psy7429 189 VMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFY 268 (555)
Q Consensus 189 ~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~~ys~l~~~l~l~R~~~~y 268 (555)
.++|||++|+.+++.++|... .+ .++..+.....+.++.+.....+... ...++|+.+++.|+|+|+.+||
T Consensus 183 pl~fgSy~Y~~~evvY~W~~~-----~V--eV~~~~~~~L~Qf~l~g~~~~te~i~--t~~gey~vmtv~F~L~R~~GYf 253 (466)
T KOG3642|consen 183 PLKFGSYAYPGSEVVYKWKKR-----SV--EVNETDSWSLDQFDLLGVSVGTEDIK--TSSGEYSVMTVYFHLSRRQGYF 253 (466)
T ss_pred cceecccCcCCCCEEEEEecc-----cE--EEcCCCCccccceeeecccccccceE--ecCCCEEEEEEEEeccceeeEE
Confidence 999999999999999999654 11 22233333456778888776554443 3368999999999999999999
Q ss_pred eeeeccchhhhhhheeeEEeccCCC-CCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHHHHHHHh
Q psy7429 269 TVNLIIPCVGISFLSVLVFYLPSDS-GEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTI 347 (555)
Q Consensus 269 ~~~liiP~~li~~ls~~sF~lp~~s-~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsll~tv 347 (555)
++++++||+++++|+|++||+..++ ++|.+||||+.|+|+++.......+|+.+ |.+++|.|+.+|+++++.++++.+
T Consensus 254 ~iQ~YlPC~ltViLSwVSFWinrEs~paRt~lGITtVLTMTtLs~~aR~slPKVs-y~TAmD~fIavCf~FvFsaliEfa 332 (466)
T KOG3642|consen 254 IIQIYLPCILTVVLSWVSFWINREATPARTSLGITTVLTMTTLSTSARKSLPKVS-YATALDVFIAVCFIFVFAALVEFA 332 (466)
T ss_pred EEeeccceeeeeeeeeeehhccccccccceeeeeeeeeeeeeeeehhccCCCccc-cchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 99999999999999999999999999999 889999999999999999999877
Q ss_pred heeeee
Q psy7429 348 AVLNVN 353 (555)
Q Consensus 348 ~v~~l~ 353 (555)
.+.++-
T Consensus 333 ~vNYft 338 (466)
T KOG3642|consen 333 VVNYFT 338 (466)
T ss_pred heeeee
Confidence 776664
No 7
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....
Probab=100.00 E-value=3.7e-40 Score=322.09 Aligned_cols=215 Identities=35% Similarity=0.756 Sum_probs=184.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCCCCC
Q psy7429 35 AKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWS 114 (555)
Q Consensus 35 ~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL~Wn 114 (555)
+++|+++||++||+.+||..+.++|+.|.+++.+.+|.++|+.+++++ +++++.+.|+|+||+||
T Consensus 1 ~~~l~~~L~~~Yd~~~rP~~~~~~~~~V~v~~~~~~i~~v~e~~~~~~---------------~~~~~~~~W~D~rL~w~ 65 (217)
T PF02931_consen 1 ETRLLKSLFDNYDKRVRPVKNEGDPTNVSVSIYLNSIVEVDESEQTFT---------------VDGFIRLSWKDPRLKWN 65 (217)
T ss_dssp HHHHHHHHHHTS-STS-SSSSSSS-EEEEEEEEEEEEEEEETTTTEEE---------------EEEEEEEEEEECCGE-S
T ss_pred ChHHHHHHHhcCCCCCCCCCCCCCeEEEEEEEEHhheeccccccchhh---------------hhhhhceeccccccccC
Confidence 579999999999999999988889999999999999999999999999 99999999999999999
Q ss_pred CCCCCCeeEeeeCCCCeecCceeeccccCCCceee-eeeceEEEeccEEEEeCCceeEEeccccccCCCcccccceeeee
Q psy7429 115 PEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVT-IMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFG 193 (555)
Q Consensus 115 p~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~-~~~~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~ 193 (555)
|++|+|++.+.++.++||+||++++|..+...... ....+.|+++|+|.+..++.+++.|+||+++||||+|+|.|+|+
T Consensus 66 ~~~~~~i~~~~v~~~~iW~P~l~~~n~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~ 145 (217)
T PF02931_consen 66 PSDYGGIESIRVPSSQIWTPDLYFYNSVSGSFEITEPNSNVRVYSDGTVRYSPRFTLTFSCPMDLRDFPFDSQNCSIKFG 145 (217)
T ss_dssp TTTTTTESEEEEEGGGS----EEETTBSSSEEECS-SSEEEEEETTSEEEEEEEEEEEEEECETTTSSSSSEEEEEEEEE
T ss_pred hhhccCcccccccccceEecccccccccccceecccccccccccccchheeeecccccccccccccccccccceeEEEEe
Confidence 99999999999999999999999999655544332 34678999999999999999999999999999999999999999
Q ss_pred cccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCCC-CCeEEEEEEEEeec
Q psy7429 194 SWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEP-YPDIIFNITLRRKT 265 (555)
Q Consensus 194 S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~~-ys~l~~~l~l~R~~ 265 (555)
||.|+..++.+.+..... ........++..+..++||++.+.........+.++.+. |+.+.++|+|+|++
T Consensus 146 s~~~~~~~v~l~~~~~~~-~~~~~~~~~~~~~~~~~ew~~~~~~~~~~~~~~~~~~~~~ys~l~~~~~l~R~~ 217 (217)
T PF02931_consen 146 SWSYNSEEVQLKWENKNP-PIDENDEVSLSDFVSNSEWKIVSVTSTRRETTYGCYNEPTYSMLSFTFTLKRRP 217 (217)
T ss_dssp ESSSSTTTEEEEESCSSS--TTSSTTTSCTTCETTSSEEEEEEEEEEEEEEESTSSSCSEEEEEEEEEEEEST
T ss_pred cccccccceeeeecccCc-eeeeeccccHHHccccceEEEEeeEEEEEEEccCCcCCCCEeeEEEEEEEEECc
Confidence 999999999999876432 111123567788899999999999888888878888877 99999999999986
No 8
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=99.78 E-value=6.8e-21 Score=183.03 Aligned_cols=120 Identities=43% Similarity=0.809 Sum_probs=84.0
Q ss_pred eccchhhhhhheeeEEeccCCCC-CeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHHHHHHHhhee
Q psy7429 272 LIIPCVGISFLSVLVFYLPSDSG-EKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVL 350 (555)
Q Consensus 272 liiP~~li~~ls~~sF~lp~~s~-~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsll~tv~v~ 350 (555)
+++||+++++++|++||+|++++ ||++|++|+||++++++..+++.||++|+.+|++++|++++|+++++++..+++++
T Consensus 1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL~~~~~~~~~~~~lP~~s~~~pl~~~~~~~~~~v~~~~~~~avv~~ 80 (237)
T PF02932_consen 1 LIIPCILIVVLSWLSFWLPPESGPERVTLGITTLLAMTVFLLMVAENLPPTSYAKPLDGWYFICTMFVFSASLEFAVVVY 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeehHHHHHHHHHhheEeCccccccccccchhHHHHHHHHHhhhhhhhcccccccchhhhhccccchhhhHHHHhhhhhh
Confidence 47999999999999999999997 99999999999999999999999999998899999888888888888888889999
Q ss_pred eeeecCCCCCCCCHHHHHHHHhhccceeeecCCCCCCCCCC
Q psy7429 351 NVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAKDNDDDL 391 (555)
Q Consensus 351 ~l~~r~~~~~~~p~w~r~~f~~~l~~~l~~~~p~~~~~~~~ 391 (555)
++|+|++..+++|+|+|+++++.+|++++++++....+..+
T Consensus 81 ~~~~~~~~~~~~~~~~r~~~l~~l~~~l~~~~~~~~~~~~~ 121 (237)
T PF02932_consen 81 NIHHRGPRTRPMPPWVRRLFLEKLARLLCMKRPSEKERKPA 121 (237)
T ss_dssp HHHHHSTTT-S------------------------------
T ss_pred hhcccccccccccchhHHHHhhhhhhhhhhccccccccccc
Confidence 99999988899999999999999999999999977666543
No 9
>KOG3646|consensus
Probab=99.71 E-value=3.2e-18 Score=175.53 Aligned_cols=76 Identities=29% Similarity=0.683 Sum_probs=73.9
Q ss_pred CcccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEE
Q psy7429 476 TFDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVL 553 (555)
Q Consensus 476 ~~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l 553 (555)
.+||||.|.|+|++|.+ ++.|.||+|||||||. +++|+++.|+|.+|+|||++||||+.+|.|..++|+||+.+
T Consensus 40 ~leRPV~N~Sepl~V~~----~~~lqQIidVDEKnQvl~~naWl~y~W~D~~LrW~pseygnI~dvR~p~~~iWkPDVLL 115 (486)
T KOG3646|consen 40 PLERPVANESEPLQVKL----GVFLQQIIDVDEKNQVLSVNAWLQYQWNDYKLRWDPSEYGNITDIRFPGGNIWKPDVLL 115 (486)
T ss_pred ccCCCccccCcCEEEEe----eeeEeccCCCcccccchhhhhhhheeehhhhhccCHHHhCCceeeccCCccccCCceec
Confidence 37899999999999999 9999999999999998 99999999999999999999999999999999999999999
Q ss_pred eC
Q psy7429 554 YN 555 (555)
Q Consensus 554 ~n 555 (555)
||
T Consensus 116 YN 117 (486)
T KOG3646|consen 116 YN 117 (486)
T ss_pred cc
Confidence 98
No 10
>KOG3645|consensus
Probab=99.56 E-value=2.3e-15 Score=162.19 Aligned_cols=75 Identities=35% Similarity=0.700 Sum_probs=71.9
Q ss_pred cccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEe
Q psy7429 477 FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLY 554 (555)
Q Consensus 477 ~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~ 554 (555)
..||+.|.+++++|++ ++.|+||++|||++|+ +++|+.++|+|++|+|||++|+||+.+++|.++||.||+++|
T Consensus 44 ~vrPv~~~~~~v~V~~----~~~l~qii~VdE~~q~~t~~~wl~~~W~D~~L~Wnp~~~~~I~~i~vp~~~IW~Pdi~l~ 119 (449)
T KOG3645|consen 44 LVRPVKNSSDPVTVNF----GLVLYQIIEVDEKNQIMTTNVWLKQSWTDERLSWDPSDYGGITKIRVPSSKIWLPDIVLY 119 (449)
T ss_pred cCCccCCCCCcEEEEE----EEEEEEEEeeccccceEEEEEEeeeEEeccCcccChHHcCCceEEEecHHHcCcCcEEEE
Confidence 3499999999999999 9999999999999997 999999999999999999999999999999999999999999
Q ss_pred C
Q psy7429 555 N 555 (555)
Q Consensus 555 n 555 (555)
|
T Consensus 120 N 120 (449)
T KOG3645|consen 120 N 120 (449)
T ss_pred e
Confidence 7
No 11
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=99.45 E-value=8.5e-14 Score=150.62 Aligned_cols=74 Identities=34% Similarity=0.632 Sum_probs=71.1
Q ss_pred cccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEe
Q psy7429 477 FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLY 554 (555)
Q Consensus 477 ~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~ 554 (555)
-.||+ +.++|++|.+ ++.+.||++|||++|+ +++|++|.|+|++|+|||++|+|++.++++.++||.||+++|
T Consensus 45 ~~RPv-~~~~~v~V~~----~i~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~Wnp~~y~~i~~i~~~~~~IW~PDi~l~ 119 (459)
T TIGR00860 45 RVRPV-FGGPPVTVSF----NLFLRSIMDVDEKNMDYTTNIWLRQEWTDERLQWNPEEYPGVTLVRTPDDSIWVPDIFFY 119 (459)
T ss_pred CcCCC-CCCCCEEEEE----EEEEEEecccccccceEEEeeeeeeEEeCCccCCCCccCCCceeccccccccccCcEEee
Confidence 45999 9999999999 9999999999999998 999999999999999999999999999999999999999999
Q ss_pred C
Q psy7429 555 N 555 (555)
Q Consensus 555 n 555 (555)
|
T Consensus 120 N 120 (459)
T TIGR00860 120 N 120 (459)
T ss_pred c
Confidence 7
No 12
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....
Probab=99.19 E-value=2.8e-11 Score=118.10 Aligned_cols=75 Identities=27% Similarity=0.567 Sum_probs=63.8
Q ss_pred cccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEe
Q psy7429 477 FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLY 554 (555)
Q Consensus 477 ~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~ 554 (555)
..||+.+.+.|++|++ ++.+.+|.+|||++++ +.+|+.+.|.|++|+|+|++|+|++.+.++.+.||.||++++
T Consensus 15 ~~rP~~~~~~~~~V~v----~~~~~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~~~v~~~~iW~P~l~~~ 90 (217)
T PF02931_consen 15 RVRPVKNEGDPTNVSV----SIYLNSIVEVDESEQTFTVDGFIRLSWKDPRLKWNPSDYGGIESIRVPSSQIWTPDLYFY 90 (217)
T ss_dssp TS-SSSSSSS-EEEEE----EEEEEEEEEEETTTTEEEEEEEEEEEEEECCGE-STTTTTTESEEEEEGGGS----EEET
T ss_pred CCCCCCCCCCeEEEEE----EEEHhheeccccccchhhhhhhhceeccccccccChhhccCcccccccccceEecccccc
Confidence 4589999999999999 8899999999999977 888899999999999999999999999999999999999988
Q ss_pred C
Q psy7429 555 N 555 (555)
Q Consensus 555 n 555 (555)
|
T Consensus 91 n 91 (217)
T PF02931_consen 91 N 91 (217)
T ss_dssp T
T ss_pred c
Confidence 6
No 13
>KOG3643|consensus
Probab=97.05 E-value=0.00038 Score=72.62 Aligned_cols=70 Identities=21% Similarity=0.523 Sum_probs=58.5
Q ss_pred CCCCcccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeC---CCCcc
Q psy7429 473 VSPTFDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVP---SEHIW 547 (555)
Q Consensus 473 ~~~~~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~---~~~iW 547 (555)
+.|.|-. .|+.|.+ ++.++.|-.|.|.+.. .+++++|.|.|++|.|+ ..++..+.+. .+.+|
T Consensus 50 lRP~fGG------~pv~Vgi----~i~VaSI~~vSEV~MDyTlt~y~rq~W~D~RLay~---~~~~~slTl~~~~~~~LW 116 (459)
T KOG3643|consen 50 LRPNFGG------PPVDVGI----TIHVASIDAVSEVNMDYTLTMYLRQTWRDPRLAYS---SKNIDSLTLDVRYVDKLW 116 (459)
T ss_pred cCCCCCC------CCeEEEE----EEEEeeechhccccchhhhhhhhhhhhcCcccccC---CCCCceEEEchhhhhccc
Confidence 7888844 4688888 7777999999999975 88889999999999998 5677788887 57899
Q ss_pred cCCEEEeC
Q psy7429 548 LPDIVLYN 555 (555)
Q Consensus 548 ~Pdi~l~n 555 (555)
.||.++-|
T Consensus 117 vPDTff~N 124 (459)
T KOG3643|consen 117 VPDTFFPN 124 (459)
T ss_pred cCceeccc
Confidence 99988754
No 14
>KOG3644|consensus
Probab=96.52 E-value=0.005 Score=66.43 Aligned_cols=75 Identities=19% Similarity=0.262 Sum_probs=56.3
Q ss_pred cccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccC-CC-CCCCceeEeeC-CCCcccCCE
Q psy7429 477 FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWS-PE-EYGGVDTLHVP-SEHIWLPDI 551 (555)
Q Consensus 477 ~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~-p~-~~~gi~~i~v~-~~~iW~Pdi 551 (555)
..||..+...|+.|.+ .+.+..|=+++|.++. +.+|++|.|.|++|+.+ .. +.-......+. ...+|.||.
T Consensus 55 ~~~P~~~~~~pv~V~v----~i~vq~i~~ise~~mdf~~di~~~~~W~DpRL~~~~~~~~~~~~~~~~l~~~~~iW~Pd~ 130 (457)
T KOG3644|consen 55 RRPPNGKGGGPVSVSV----EITVQSISSISEITMDFEVDIYFRERWQDPRLAYNALKFDHILPCKLNLSLKQKIWTPDT 130 (457)
T ss_pred ccCCCccCCCceEEEE----EEEEEeecceecccceEEeeeeeeeeEeCccccccccCcccccccccccccCCceecCce
Confidence 4466666678899998 8888999999999976 99999999999999988 33 33222222221 267999999
Q ss_pred EEeC
Q psy7429 552 VLYN 555 (555)
Q Consensus 552 ~l~n 555 (555)
++-|
T Consensus 131 ~F~N 134 (457)
T KOG3644|consen 131 FFAN 134 (457)
T ss_pred eeec
Confidence 8765
No 15
>KOG3642|consensus
Probab=94.82 E-value=0.03 Score=59.17 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=54.4
Q ss_pred cccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEeC
Q psy7429 479 NQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555 (555)
Q Consensus 479 rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~n 555 (555)
||..+. .|+.|.+ ++.+..+-=|.+-+.. +.+.++|.|.|++|..+- -...+.--.+-..+||.||-+++|
T Consensus 60 RP~~g~-~pt~v~~----di~V~S~GPVSd~~meytid~~FrQ~W~D~RL~f~~-~~~~L~Ln~~m~~kiW~PDTfF~N 132 (466)
T KOG3642|consen 60 RPDIGS-KPTEVET----DIYVRSMGPVSDSDMEYTIDCFFRQTWVDDRLKFNG-PQEALPLNSLMLSKIWIPDTFFRN 132 (466)
T ss_pred CCCCCC-CCcEEEE----EEEEeecccccccCceEEEEEEEEEeehhhhhcccC-cchhhccchhhhcCcccCCccccc
Confidence 888777 8899988 8888888888888755 899999999999999881 111233233336889999998876
No 16
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=94.61 E-value=0.39 Score=47.95 Aligned_cols=148 Identities=18% Similarity=0.303 Sum_probs=73.4
Q ss_pred ccccCCCcccccce-eeeecccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCCCCCe
Q psy7429 176 IDVEYFPFDVQTCV-MKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPD 254 (555)
Q Consensus 176 ~dl~~FPfD~Q~C~-l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~~ys~ 254 (555)
=+..+||||+..-. +.+..+.-++. +.......+...+- ...|++...... .+ + ..
T Consensus 97 G~~~~yPFD~Y~~~~i~v~~~~g~~~-----------~~~~~p~~v~~~~s--~~gW~i~~~~~~------~~-~---~~ 153 (256)
T PF14494_consen 97 GDINNYPFDRYRTDPIRVSAFVGNGD-----------NREPVPARVTLTGS--LSGWDISATRVA------DA-D---GG 153 (256)
T ss_pred CCccCCCCcccccceEEEEEEecCCC-----------cccccceEEEEEcc--cCCeEEEeeecC------CC-C---Cc
Confidence 45688999999988 67654322210 00111111112211 235776542111 11 1 45
Q ss_pred EEEEEEEEeeccceeeeeccchhhhhhheeeEEeccCCC---CCeeeehhHHHHHHHHHH-HHHHhhCCCCccccchhHH
Q psy7429 255 IIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDS---GEKVSLCISILLSLTVFF-LLLAEIIPPTSLTVPLLGK 330 (555)
Q Consensus 255 l~~~l~l~R~~~~y~~~liiP~~li~~ls~~sF~lp~~s---~~Ri~l~it~LLs~~~~~-~~l~~~lP~~s~~~P~i~~ 330 (555)
..+.++++|...--.+.+++ |+++.+|+.+++++-... ..++...+...++.+.|. --+.+.+|..+-.=.++|.
T Consensus 154 ~~~~i~l~Rs~~~~~F~~~i-~~vm~~L~~~al~~ai~~~~~rr~~~~~~l~w~aA~LFAlp~lRN~lPGaPP~G~~iD~ 232 (256)
T PF14494_consen 154 DGVDITLKRSRGVLFFALFI-CLVMWALATLALFVAIQVLRRRRKFEPPMLTWMAAMLFALPPLRNILPGAPPIGSWIDF 232 (256)
T ss_pred eeEEEEEEccCcceehHHHH-HHHHHHHHHHHHHHHHHHHhCccccccchHHHHHHHHHhhhhHhccCCCCCCCcceEee
Confidence 67889999987765554433 344445555555553331 234444444444433333 2467788877633335565
Q ss_pred H-HHHHHHHHHHHHHHHh
Q psy7429 331 Y-LLFTMILVTLSVVVTI 347 (555)
Q Consensus 331 ~-~~~~~~l~~lsll~tv 347 (555)
+ ++-+++++.+|++..+
T Consensus 233 ~~vlW~~i~l~~~m~~~v 250 (256)
T PF14494_consen 233 AGVLWVLIALVASMVLYV 250 (256)
T ss_pred eehHHHHHHHHHHHHHHH
Confidence 3 2235555555554443
No 17
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=32.04 E-value=89 Score=26.24 Aligned_cols=46 Identities=13% Similarity=0.255 Sum_probs=22.3
Q ss_pred CCCHHHHHHH---Hhhccc-eeeecCCCCCCCCCCCCCCCCceecccCCC
Q psy7429 361 VMKPWVHKVF---IEVLPK-ILFIQRPAKDNDDDLDKPPDGVLTEVFDVP 406 (555)
Q Consensus 361 ~~p~w~r~~f---~~~l~~-~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 406 (555)
.+|+.++.+. .+++.| .+-|++-+-.+......-+++...+..+.+
T Consensus 37 EvPkYIK~~VrYlVEYlTRRRVWmqrTQLtEATGd~e~~rgiv~drrd~~ 86 (117)
T PF07234_consen 37 EVPKYIKELVRYLVEYLTRRRVWMQRTQLTEATGDVEIGRGIVEDRRDQQ 86 (117)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCceecccccccccccC
Confidence 4566665543 355543 455665554444433334455555444333
No 18
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=30.17 E-value=58 Score=28.39 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=11.2
Q ss_pred EEEEEecEEEecC
Q psy7429 98 TNVWVNQEWEDYK 110 (555)
Q Consensus 98 ~~~~l~~~W~D~R 110 (555)
+++..++.|+|.+
T Consensus 70 v~v~YrfYWYD~~ 82 (123)
T COG5633 70 VTVHYRFYWYDAQ 82 (123)
T ss_pred eEEEEEEEEEcCC
Confidence 7788999999976
No 19
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=27.55 E-value=1e+02 Score=27.36 Aligned_cols=52 Identities=13% Similarity=0.285 Sum_probs=26.0
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHhheeeeeecCCCCCCCCHHHHHHHH
Q psy7429 319 PPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFI 371 (555)
Q Consensus 319 P~~s~~~P~i~~~~~~~~~l~~lsll~tv~v~~l~~r~~~~~~~p~w~r~~f~ 371 (555)
|.++ .+|.++.+..--...+.+++++..++..+|+|--...-+....|.++.
T Consensus 52 p~ts-~~~~~~sL~~H~~FtiS~~~lilLF~~GihkrVvapsII~~R~R~vL~ 103 (125)
T PF09771_consen 52 PETS-QVSFLDSLWNHPFFTISCIILILLFLFGIHKRVVAPSIIASRCRSVLA 103 (125)
T ss_pred cccc-cchHHHHHHhCHhHHHHHHHHHHHHHhhhhhHhhCchHHHHHHHHHHh
Confidence 4555 566766643333333334444455566777655433334444455544
No 20
>PRK15396 murein lipoprotein; Provisional
Probab=21.34 E-value=1.7e+02 Score=23.75 Aligned_cols=28 Identities=11% Similarity=0.114 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhhcCChhHHHHHHH
Q psy7429 14 VLFPSLTFLVFSVIIAQGNDEAKRLYDD 41 (555)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~~~~~~~L~~~ 41 (555)
+++..+++++++.+||+.++...+|-.+
T Consensus 6 l~l~av~ls~~LLaGCAs~~kvd~Lssq 33 (78)
T PRK15396 6 LVLGAVILGSTLLAGCSSNAKIDQLSSD 33 (78)
T ss_pred HHHHHHHHHHHHHHHcCCchhHHHHHHH
Confidence 3444455545555777777665555544
Done!