Query psy7429
Match_columns 555
No_of_seqs 377 out of 2274
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 18:07:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aq5_A Acetylcholine receptor 100.0 3.2E-75 1.1E-79 625.7 12.3 349 12-385 6-358 (461)
2 4aq5_B Acetylcholine receptor 100.0 1.9E-74 6.4E-79 625.2 13.1 358 11-386 3-362 (493)
3 4aq5_C Acetylcholine receptor 100.0 2.7E-73 9.2E-78 619.6 11.8 344 28-386 18-368 (522)
4 4aq5_E Acetylcholine receptor 100.0 2.5E-72 8.7E-77 607.8 13.9 337 34-386 2-340 (488)
5 2bg9_A Acetylcholine receptor 100.0 8.7E-67 3E-71 548.1 13.1 311 33-367 2-313 (370)
6 2bg9_B Acetylcholine receptor 100.0 3.1E-66 1E-70 543.7 16.0 303 33-361 2-304 (370)
7 2bg9_C Acetylcholine receptor 100.0 3.5E-66 1.2E-70 543.1 16.3 302 33-361 2-306 (369)
8 2bg9_E Acetylcholine receptor 100.0 1.6E-66 5.4E-71 546.1 13.2 305 34-361 2-308 (370)
9 3rhw_A Avermectin-sensitive gl 100.0 1.6E-65 5.5E-70 534.5 18.0 321 34-380 1-329 (347)
10 3tlw_A GLR4197 protein, GLIC; 100.0 7.2E-63 2.5E-67 509.3 17.7 298 45-372 6-305 (321)
11 3rqw_A ELIC pentameric ligand 100.0 6.9E-60 2.4E-64 487.2 13.3 295 52-379 2-313 (322)
12 4aoe_A Acetylcholine-binding p 100.0 2.7E-48 9.2E-53 373.1 21.2 203 32-263 2-204 (205)
13 2qc1_B Acetylcholine receptor 100.0 7.4E-48 2.5E-52 373.8 23.1 210 32-265 2-212 (212)
14 4aod_A Acetylcholine-binding p 100.0 7.9E-48 2.7E-52 370.4 20.8 203 32-263 2-204 (205)
15 3sq6_A ACHBP, neuronal acetylc 100.0 4.9E-47 1.7E-51 365.5 18.5 200 34-264 2-203 (204)
16 4afh_A ACHBP; acetylcholine-bi 100.0 1.7E-46 5.9E-51 367.3 17.6 213 31-272 2-221 (230)
17 2wn9_A Soluble acetylcholine r 100.0 1.8E-45 6.3E-50 360.5 18.6 213 31-274 11-226 (228)
18 1uw6_A Acetylcholine-binding p 100.0 2.2E-44 7.6E-49 349.1 21.9 205 34-270 3-211 (211)
19 3igq_A GLR4197 protein; plgic 100.0 1.9E-42 6.5E-47 332.3 16.7 193 48-268 5-197 (201)
20 2bj0_A Acetylcholine-binding p 100.0 4.4E-41 1.5E-45 324.0 19.8 197 36-264 4-203 (203)
21 2ksr_A Neuronal acetylcholine 99.9 2.1E-25 7.1E-30 204.9 -0.5 119 243-361 6-124 (164)
22 1oed_C Acetylcholine receptor 99.9 8.3E-26 2.8E-30 223.2 -4.7 122 265-386 1-122 (260)
23 1oed_B Acetylcholine receptor 99.9 5.8E-26 2E-30 223.1 -6.2 121 265-385 1-121 (250)
24 1oed_A Acetylcholine receptor 99.9 1E-25 3.4E-30 218.3 -5.2 121 265-385 1-124 (227)
25 1oed_E Acetylcholine receptor 99.9 1.6E-25 5.4E-30 221.2 -4.8 122 265-386 1-124 (260)
26 2lly_A Neuronal acetylcholine 99.9 9.9E-25 3.4E-29 195.1 0.6 118 260-377 2-120 (137)
27 2lkg_A Acetylcholine receptor; 99.9 1.5E-25 5.2E-30 200.4 -11.4 116 241-356 17-140 (140)
28 4aoe_A Acetylcholine-binding p 99.6 2.5E-16 8.5E-21 150.8 7.5 73 477-555 19-93 (205)
29 4aod_A Acetylcholine-binding p 99.6 3.8E-16 1.3E-20 149.7 7.9 73 477-555 19-93 (205)
30 3sq6_A ACHBP, neuronal acetylc 99.6 2.2E-15 7.5E-20 144.5 7.7 74 477-555 17-92 (204)
31 4afh_A ACHBP; acetylcholine-bi 99.6 2.5E-15 8.4E-20 146.6 8.0 72 480-555 26-103 (230)
32 2qc1_B Acetylcholine receptor 99.6 3.8E-15 1.3E-19 143.8 7.5 75 477-555 19-95 (212)
33 1uw6_A Acetylcholine-binding p 99.5 2.1E-14 7.1E-19 138.5 7.9 72 477-555 18-91 (211)
34 2wn9_A Soluble acetylcholine r 99.5 1.2E-14 4.1E-19 141.7 6.0 72 480-555 30-103 (228)
35 3igq_A GLR4197 protein; plgic 99.5 1.4E-14 4.8E-19 138.5 4.5 72 478-555 7-80 (201)
36 4aq5_E Acetylcholine receptor 99.5 3.5E-14 1.2E-18 153.3 7.0 75 477-555 17-93 (488)
37 4aq5_A Acetylcholine receptor 99.5 2.7E-14 9.2E-19 153.0 5.2 75 477-555 42-118 (461)
38 4aq5_C Acetylcholine receptor 99.5 5.2E-14 1.8E-18 153.1 7.3 75 477-555 41-117 (522)
39 2bg9_C Acetylcholine receptor 99.4 7.1E-14 2.4E-18 146.0 7.9 75 477-555 20-96 (369)
40 2bg9_B Acetylcholine receptor 99.4 7.8E-14 2.7E-18 145.8 7.7 75 477-555 18-94 (370)
41 3rhw_A Avermectin-sensitive gl 99.4 1.1E-13 3.7E-18 143.5 8.4 75 477-555 17-94 (347)
42 4aq5_B Acetylcholine receptor 99.4 5E-14 1.7E-18 152.3 5.0 75 477-555 42-118 (493)
43 2bg9_E Acetylcholine receptor 99.4 8.5E-14 2.9E-18 145.5 6.4 75 477-555 17-93 (370)
44 2bg9_A Acetylcholine receptor 99.4 7.6E-14 2.6E-18 145.9 4.9 75 477-555 18-94 (370)
45 2bj0_A Acetylcholine-binding p 99.4 2.1E-13 7.3E-18 130.6 7.5 72 477-555 15-89 (203)
46 3tlw_A GLR4197 protein, GLIC; 99.4 2.3E-13 8E-18 139.5 7.5 71 479-555 12-84 (321)
47 3rqw_A ELIC pentameric ligand 99.0 8.8E-11 3E-15 120.3 4.8 67 480-555 2-80 (322)
48 1vry_A Glycine receptor alpha- 98.8 6.7E-10 2.3E-14 87.4 -0.3 63 294-357 2-64 (76)
49 1mot_A Glycine receptor alpha- 67.6 0.16 5.5E-06 31.6 -3.9 27 294-320 2-28 (28)
50 4gyx_A Type III collagen fragm 61.6 12 0.00041 22.6 3.7 19 454-472 12-30 (31)
No 1
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=100.00 E-value=3.2e-75 Score=625.74 Aligned_cols=349 Identities=48% Similarity=0.929 Sum_probs=293.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeeccc
Q psy7429 12 MHVLFPSLTFLVFSVIIAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNL 91 (555)
Q Consensus 12 m~~~~~~l~~~~~~~~~~~~~~~~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~ 91 (555)
|+.+.+++ ++.+.+.++.+++++++|+++||++||+.+||+.+.++|+.|++++.+.+|.++||++|.++
T Consensus 6 ~~~~~~l~-l~~~~~~~~~~~~~e~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~v~l~l~~i~~vdE~~q~~t--------- 75 (461)
T 4aq5_A 6 YWHVGLVL-LLFSCCGLVLGSEHETRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVE--------- 75 (461)
T ss_dssp --------------------CTTHHHHHHHHHHTCCSSCCCCCSSSSCEEEEEEEEEEEEEEEETTTTEEE---------
T ss_pred hhHHHHHH-HHHHHHHhhcCCcHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeehhhhccceEEE---------
Confidence 66665433 44444556777888999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEEEecEEEecCCCCCCCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeE
Q psy7429 92 KNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYK 171 (555)
Q Consensus 92 ~~~~~~~~~~l~~~W~D~RL~Wnp~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~ 171 (555)
+++|++|+|+|+||+|||++|+|++.+.++.++||+||++++|+++++++.....+++|++||+|.|.+|++++
T Consensus 76 ------~~~~l~~~W~D~rL~Wnp~~y~gi~~l~vp~~~IW~PDi~l~N~~d~~~~~~~~~~v~v~~dG~V~~~~~~~~~ 149 (461)
T 4aq5_A 76 ------TNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHMTKLLLDYTGKIMWTPPAIFK 149 (461)
T ss_dssp ------EEEEEEEEECCTTCBCCTTTHHHHSSEEEEGGGSCCCCEEESSCCCSCCTTCSSCEEEECSBCCEEECCEEEEE
T ss_pred ------EEEEEeeeeECcccCCChhhcCCccEEEecCCCEECCceeeecccccccccccccceEEcCCccEEEecccccc
Confidence 99999999999999999999999999999999999999999999999887666678999999999999999999
Q ss_pred EeccccccCCCcccccceeeeecccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCC-
Q psy7429 172 SFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEE- 250 (555)
Q Consensus 172 ~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~- 250 (555)
+.|+||+++||||+|+|+|+|+||+|+++++++.+..+ ++++++|..++||++.+.+..+....|.||.+
T Consensus 150 s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~---------~~~l~~~~~~~eW~l~~~~~~~~~~~y~~~~~~ 220 (461)
T 4aq5_A 150 SYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESD---------RPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDT 220 (461)
T ss_dssp EECCCCGGGSSSSCEEEEEEEEESSCCTTTEEEECCCC---------CCSGGGCCTTCSSEEEEEEEEEEECCCSSSSSC
T ss_pred ccccccccCCCCccCccCeEEeccccCCceEEEEeccc---------cccHHhhhccCceEEeeeeeEEEEEeecCcCCC
Confidence 99999999999999999999999999999999986432 56788899999999999999888888999888
Q ss_pred CCCeEEEEEEEEeeccceeeeeccchhhhhhheeeEEeccCCCCCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHH
Q psy7429 251 PYPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGK 330 (555)
Q Consensus 251 ~ys~l~~~l~l~R~~~~y~~~liiP~~li~~ls~~sF~lp~~s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~ 330 (555)
+|+++++++++||+++||++++++||+++++++|++||+|+++++|+++++|+||++++|+..+++.+|++|.++|+||+
T Consensus 221 ~y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s~eRv~LgiT~LLt~tvfl~~v~~~LP~tS~~vplI~~ 300 (461)
T 4aq5_A 221 PYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGK 300 (461)
T ss_dssp CCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCGG
T ss_pred CcceEEEEEEEEecccceeeehhhhHHHHHHHHHheEeccccccceeehhHHHHHHHHHHHHHHHhhcCcccCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHHHHHhheeeeeecCCCCCCCCHHHHHHHHhhccceee---ecCCCC
Q psy7429 331 YLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILF---IQRPAK 385 (555)
Q Consensus 331 ~~~~~~~l~~lsll~tv~v~~l~~r~~~~~~~p~w~r~~f~~~l~~~l~---~~~p~~ 385 (555)
|+++||+++++|++++++|+|+|+|++.+|++|+|+|++|++++|++|| |++|.+
T Consensus 301 y~~~~m~~v~~sll~tv~Vl~l~~r~~~~~~mp~w~r~~~l~~l~~~l~~~~~~~p~~ 358 (461)
T 4aq5_A 301 YMLFTMIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIFINTIPNVMFFSTMKRASK 358 (461)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHCCTTTC----------------------------
T ss_pred HHHHHHHHHHHHHHHHhhheeeeccCCCCCCCCHHHHHHHHHhhHHHhhhhhcCCCCc
Confidence 9999999999999999999999999999999999999999999999999 999864
No 2
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=100.00 E-value=1.9e-74 Score=625.17 Aligned_cols=358 Identities=43% Similarity=0.798 Sum_probs=290.0
Q ss_pred hHHHHHHHHHHHHHHHh-hhcCChhHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeec
Q psy7429 11 AMHVLFPSLTFLVFSVI-IAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQ 89 (555)
Q Consensus 11 ~m~~~~~~l~~~~~~~~-~~~~~~~~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~ 89 (555)
-|++++++++++++.++ ++.+.+++++|+++||++||+.+||+.+.++|+.|++++.+.+|.++||++|.++
T Consensus 3 ~~~~~~l~~l~~~~~~~~~~~~~~~e~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~v~l~l~~i~~vdE~~q~~t------- 75 (493)
T 4aq5_B 3 DVRRMALGLVVMMALALSGVGASVMEDTLLSVLFENYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMT------- 75 (493)
T ss_dssp ----------------------CTTHHHHHHHHHHHCCSSSCSSCSSSSCCEEEEECCEEEEEEEETTTTEEE-------
T ss_pred hHHHHHHHHHHHHHHhcccccCCcHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeeeccccceEEE-------
Confidence 37777777666666665 6667888999999999999999999999899999999999999999999999999
Q ss_pred ccccceeEEEEEEecEEEecCCCCCCCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCce
Q psy7429 90 NLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAI 169 (555)
Q Consensus 90 ~~~~~~~~~~~~l~~~W~D~RL~Wnp~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~ 169 (555)
+++|++|+|+|+||+|||++|+|++.+.++.++||+||++++|++++.++.....++.|++||+|.|.+|++
T Consensus 76 --------~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~~~~IW~PDi~l~N~~d~~~~~~~~~nv~v~~~G~V~~~~~~~ 147 (493)
T 4aq5_B 76 --------TSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITLHVNVLVQHTGAVSWHPSAI 147 (493)
T ss_dssp --------EEEECEEEEECTTCCCCHHHHSSCSCEEECSCSSCCCCCEESSCCCSCEESSSSSCEEECTTSEEEECCEEE
T ss_pred --------EEEEeecceECcccCCChhhcCCeeEEecccccCccCcEEEecccccccccccccceEEecCCCEEEeeeee
Confidence 999999999999999999999999999999999999999999999998876666789999999999999999
Q ss_pred eEEeccccccCCCcccccceeeeecccccCceEEEEEccCCCC-CCceeeccccccccccceeEEeeeeeEEeeeecccC
Q psy7429 170 YKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPD-SDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCC 248 (555)
Q Consensus 170 ~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~-~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~ 248 (555)
+++.|+||+++||||+|+|+|+|+||+|+++++++.+..+..+ ....+..+++++|..++||++.+.+..+....|.|
T Consensus 148 ~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~l~~f~~~~eW~l~~~~~~~~~~~~~~- 226 (493)
T 4aq5_B 148 YRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAKGEREVKEIMINQDAFTENGQWSIEHKPSRKNWRSDDP- 226 (493)
T ss_dssp EEECCSCTTCSSSTTCCCCEEEEECSSCCBTSCEEECCCCC---------CCSGGGCCTTCSSBCCCCCCEECCCTTSS-
T ss_pred eeecccccccCCCccceeEEEEEeeecCccccEEEEeccCCCCccceecccccHHHhccccceeeeeeeEEEEeecCCC-
Confidence 9999999999999999999999999999999999998654322 11123457888999999999999888777766654
Q ss_pred CCCCCeEEEEEEEEeeccceeeeeccchhhhhhheeeEEeccCCCCCeeeehhHHHHHHHHHHHHHHhhCCCCccccchh
Q psy7429 249 EEPYPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLL 328 (555)
Q Consensus 249 ~~~ys~l~~~l~l~R~~~~y~~~liiP~~li~~ls~~sF~lp~~s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i 328 (555)
.|++++++|++||+++||++++++||+++++++|++||||+++++|+++++|+||++++|+..+++.+|++|+.+|+|
T Consensus 227 --~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~s~eRvsLgiT~LLt~tvfl~~v~~~LP~tS~~vPlI 304 (493)
T 4aq5_B 227 --SYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLADKVPETSLSVPII 304 (493)
T ss_dssp --SBCCEEEECCCBCCCCSSTTTTHHHHHHHHHHHHHHHHSTTTCGGGGTHHHHHHHHHHHHHHHHHHHTTTTTTSSCCC
T ss_pred --CccEEEEEEEEEeccceeeehhhhhHHHHHHHHHhEEecCCCCCceEEehHHHHHHHHHHHHHHHhcCCccccCCCch
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999779999
Q ss_pred HHHHHHHHHHHHHHHHHHhheeeeeecCCCCCCCCHHHHHHHHhhccceeeecCCCCC
Q psy7429 329 GKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAKD 386 (555)
Q Consensus 329 ~~~~~~~~~l~~lsll~tv~v~~l~~r~~~~~~~p~w~r~~f~~~l~~~l~~~~p~~~ 386 (555)
|+|+++||+++++|++++++|+|+|+|++.+|++|+|+|++|++++|++|||++|.++
T Consensus 305 ~~y~~~~m~~v~lsll~tv~Vl~l~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~~~~~ 362 (493)
T 4aq5_B 305 ISYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTT 362 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTC--------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHhheeeeccCCCCCcCCHHHHHHHHHhCcceEEecCCccc
Confidence 9999999999999999999999999999999999999999999999999999999764
No 3
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=100.00 E-value=2.7e-73 Score=619.60 Aligned_cols=344 Identities=42% Similarity=0.759 Sum_probs=287.5
Q ss_pred hhcCChhHHHHHHHHH--hcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecE
Q psy7429 28 IAQGNDEAKRLYDDLL--SNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQE 105 (555)
Q Consensus 28 ~~~~~~~~~~L~~~Ll--~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~ 105 (555)
++.++++++||+++|| ++||+.+||+.+.++|+.|++++.+.+|.++||++|.++ +++|++|+
T Consensus 18 ~~~~~~~e~rL~~~Ll~~~~Yd~~~RPv~~~~~pv~V~v~l~l~~I~~VdE~~q~~t---------------~~vwl~q~ 82 (522)
T 4aq5_C 18 GCSGVNEEERLINDLLIVNKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLT---------------TNVWMDHA 82 (522)
T ss_dssp ----CTTCTTTTTTSCSTTTSCSSSCCSSSSSSCCCEEEEEEEEEEEEEETTTTEEE---------------EEEEEEEE
T ss_pred ccccCcHHHHHHHHhhcccCCCCCCCCCCCCCCcEEEEEEEEeeecccccccccEEE---------------EEEEEeee
Confidence 4566778899999999 999999999999999999999999999999999999999 99999999
Q ss_pred EEecCCCCCCCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeEEeccccccCCCccc
Q psy7429 106 WEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDV 185 (555)
Q Consensus 106 W~D~RL~Wnp~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~ 185 (555)
|+|+||+|||++|+|++.+.++.++||+||++++|++++.++.....++.|++||+|.|.+|+++++.|+||+++||||+
T Consensus 83 W~D~RL~Wnp~~y~gi~~l~vp~~~IW~PDi~l~N~~d~~~~~~~~~nv~V~~dG~V~~~~~~~~~ssC~mdl~~FPfD~ 162 (522)
T 4aq5_C 83 WYDHRLTWNASEYSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDW 162 (522)
T ss_dssp EECTTCCCCCCCCCTCSCEEECGGGSCCCCEEETTTCSSCCBSCSSCCEEECSSSEEEECCEEEEEECCCCTTTSCSTTC
T ss_pred EeCcccCCCchhcCCceEEeeccCCEECCcEeccccccCCccccccceEEEeCCccEEEEcccccccccccccCcCCCcC
Confidence 99999999999999999999999999999999999999988776667899999999999999999999999999999999
Q ss_pred ccceeeeecccccCceEEEEEccCCC---CCCceeeccccccccccceeEEeeeeeEEeeeecc-cCCCCCCeEEEEEEE
Q psy7429 186 QTCVMKFGSWTYDGYTVDLKHILQGP---DSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYS-CCEEPYPDIIFNITL 261 (555)
Q Consensus 186 Q~C~l~f~S~~y~~~~v~l~~~~~~~---~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~-~~~~~ys~l~~~l~l 261 (555)
|+|+|+|+||+|+++++++.+..+.. +.......+++++|..++||++.+.+..+....+. |+++.|++++++|++
T Consensus 163 Q~C~L~f~S~~Y~~~~v~l~~~~~~~~~~~~~~~~~~~d~~~f~~~gEW~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~l 242 (522)
T 4aq5_C 163 QNCSLKFTALNYNANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLII 242 (522)
T ss_dssp CEEEEEEEETTCCTTTCCEEC---------------CCSTTSCCTTCSEEEEECCEEEEECCCSSCSSCCCEEEEEEEEE
T ss_pred ceEeEEEecccccCceeEEEeccCcccccCccceeeeccHHHceecceEEEeeeEEEEEeeeccccCCCCcceEEEEEEE
Confidence 99999999999999999999865431 11111224677889999999999988776665444 445579999999999
Q ss_pred EeeccceeeeeccchhhhhhheeeEEeccCCCCCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHH
Q psy7429 262 RRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTL 341 (555)
Q Consensus 262 ~R~~~~y~~~liiP~~li~~ls~~sF~lp~~s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~l 341 (555)
||+++||++++++||+++++++|++||||+++++|+++++|+||++++|+..+++.+|++|+.+|+||+|+++||+++++
T Consensus 243 rR~~~~Yii~l~iP~~liv~Ls~lsF~Lp~d~~eRisLgIT~LLt~tvfl~~v~~~LP~tS~~vPlI~~y~~~~m~lv~l 322 (522)
T 4aq5_C 243 RRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTG 322 (522)
T ss_dssp EECCSSHHHHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHH
T ss_pred ecccceeeeehhhHHHHHHHHHHheeecCCCcCceEEehHHHHHHHHHHHHHHHhcCCcccCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHhheeeeeecCCCCCCCCHHHHHHHHhhccceeeec-CCCCC
Q psy7429 342 SVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQ-RPAKD 386 (555)
Q Consensus 342 sll~tv~v~~l~~r~~~~~~~p~w~r~~f~~~l~~~l~~~-~p~~~ 386 (555)
|++++++++|+|+|++.+|+||+|+|++|++++|++|||+ +|.++
T Consensus 323 Sll~tviVlnl~~r~~~~~~mp~wvr~~fl~~l~~~l~m~~~p~~~ 368 (522)
T 4aq5_C 323 VVVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRVDEIE 368 (522)
T ss_dssp HHHHHHHHHHHHSCCSSCC---------------------------
T ss_pred HHHHHheEEEEEccCCCCCCCChHHHHHHHHhCchheEEecCCCcc
Confidence 9999999999999999999999999999999999999999 98654
No 4
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=100.00 E-value=2.5e-72 Score=607.78 Aligned_cols=337 Identities=41% Similarity=0.772 Sum_probs=287.9
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCCCC
Q psy7429 34 EAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKW 113 (555)
Q Consensus 34 ~~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL~W 113 (555)
+++||+++||++||+.+||+.+.++|+.|++++.+.+|.++||++|.++ +++|++|+|+|+||+|
T Consensus 2 ~e~rL~~~Ll~~Yd~~~RP~~~~~~pv~V~v~l~l~~I~~VdE~~q~~t---------------~~v~l~~~W~D~rL~W 66 (488)
T 4aq5_E 2 EEGRLIEKLLGDYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALT---------------TNVWIEIQWNDYRLSW 66 (488)
T ss_dssp CHHHHHHHHHHHCCSSSCCCSSTTSCCCEEEEEEEEEECCCBTTTTBEE---------------EEEEEEEEEECCTTCC
T ss_pred hHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeeccccccceee---------------eeeeeeeEEECcccCc
Confidence 5799999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeEEeccccccCCCcccccceeeee
Q psy7429 114 SPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFG 193 (555)
Q Consensus 114 np~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~ 193 (555)
||++|+|++.+.++.++||+||++++|++++.++.....++.|++||+|.|.+|+++++.|+||+++||||+|+|+|+|+
T Consensus 67 np~~y~gi~~l~v~~~~IW~PDi~l~N~~d~~~~~~~~~nv~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~ 146 (488)
T 4aq5_E 67 NTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYANVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFR 146 (488)
T ss_dssp CTTTTTTCSCCCCCTTSSCCCCEECSSSCCSCCBSCSSSCCCBCTTSEEEECCEEBCEECCCCSSSSSSSSCCCCCEEEE
T ss_pred CchhcCCceEEecCccCEECCceehhccccccccccccccEEEeCCceEEEecceeEEeecccccccCCCcCceeeEEee
Confidence 99999999999999999999999999999998877666788999999999999999999999999999999999999999
Q ss_pred cccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeeccc-CCCCCCeEEEEEEEEeeccceeeee
Q psy7429 194 SWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSC-CEEPYPDIIFNITLRRKTLFYTVNL 272 (555)
Q Consensus 194 S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~-~~~~ys~l~~~l~l~R~~~~y~~~l 272 (555)
||+|+++++++.+..++ +.......+++++|..++||++.+.+..+....+.| +++.|++++++|++||+++||++++
T Consensus 147 S~~y~~~~v~l~~~~~~-~~~~~~~~~d~~~~~~~~eW~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Y~i~l 225 (488)
T 4aq5_E 147 SQTYNAHEVNLQLSAEE-GEVVEWIHIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINI 225 (488)
T ss_dssp ESSSCSSSCCEECCCSC-C-------CGGGSCCTTCSEEEEECCCEEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHH
T ss_pred eeccccceEEEEeccCC-CcceeeeeccHHHccccceEEEEeeEEEEEEeeeccCCCCCcceEEEEEEEccchhheehhH
Confidence 99999999999987543 111122346778899999999999887766654444 4556999999999999999999999
Q ss_pred ccchhhhhhheeeEEeccCC-CCCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHHHHHHHhheee
Q psy7429 273 IIPCVGISFLSVLVFYLPSD-SGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLN 351 (555)
Q Consensus 273 iiP~~li~~ls~~sF~lp~~-s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsll~tv~v~~ 351 (555)
++||+++++++|++||||++ +++|++|++|+||++++|+..+++.+|++|+.+|+||+|+++||+++++|++++++|+|
T Consensus 226 ~iP~~liv~Ls~lsF~Lp~~a~~eRvsLgIt~LLt~tvfl~~v~~~LP~tS~~vPlI~~y~~~~m~lv~~Sll~tv~Vln 305 (488)
T 4aq5_E 226 IAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLN 305 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCccccCceEEEehHHHHHHHHHHHHHHhhCCccccCccHHHHHHHHHHHHHHHHHHHHhhEEE
Confidence 99999999999999999999 69999999999999999999999999999977999999999999999999999999999
Q ss_pred eeecCCCCCCCCHHHHHHHHhhccceeeecCCCCC
Q psy7429 352 VNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAKD 386 (555)
Q Consensus 352 l~~r~~~~~~~p~w~r~~f~~~l~~~l~~~~p~~~ 386 (555)
+|+|++.+|++|+|+|++|++++|++|||++|.++
T Consensus 306 l~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~p~~~ 340 (488)
T 4aq5_E 306 VSLRTPNTHSLSEKIKHLFLEFLPKYLGMHLEPSE 340 (488)
T ss_dssp HTTCSTTTCC-------------------------
T ss_pred EEccCCCCCcCChhHhhhhHhhCcceeEecCCccc
Confidence 99999999999999999999999999999999764
No 5
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=8.7e-67 Score=548.09 Aligned_cols=311 Identities=50% Similarity=0.949 Sum_probs=292.1
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCCC
Q psy7429 33 DEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLK 112 (555)
Q Consensus 33 ~~~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL~ 112 (555)
+++++|+++||++||+.+||+.+.++|+.|++++.+.+|.++||++|.++ +++|++|+|+|+||+
T Consensus 2 ~~~~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~---------------~~~~l~~~W~D~rL~ 66 (370)
T 2bg9_A 2 EHETRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVE---------------TNVRLRQQWIDVRLR 66 (370)
T ss_dssp TTHHHHHHHHHHSCCTTCCCCCSSSSCEEEEEEEEEEEEEEEETTTTEEE---------------EEEEEEEEECCTTSC
T ss_pred hHHHHHHHHHHhcCCCCCCCCCCCCCCEEEEEEEEehHhhcchhhccceE---------------EEEEEeeeeECCCcc
Confidence 46899999999999999999998899999999999999999999999999 999999999999999
Q ss_pred CCCCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeEEeccccccCCCcccccceeee
Q psy7429 113 WSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKF 192 (555)
Q Consensus 113 Wnp~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f 192 (555)
|||++|+|++.+.++.++||+||++++|++++.++.....+++|++||+|.|.+|+++++.|+||+++||||+|+|.|+|
T Consensus 67 w~p~~~~~i~~l~v~~~~IW~PDi~~~N~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f 146 (370)
T 2bg9_A 67 WNPADYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKL 146 (370)
T ss_dssp CCTTTHHHHSSEEEEGGGSCCCCEEETTCCCSCEESCSSCEEEECSSCCEEECCEEEEEEECCCCTTSSSSSCEEEEEEE
T ss_pred CChhhcCCccEEEechhhccCCcEeccccccccccccccceEEEECCeeEEEecceEEEEECCCCcCCCCCCcceeeEEE
Confidence 99999999999999999999999999999998887655678999999999999999999999999999999999999999
Q ss_pred ecccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCC-CCCCeEEEEEEEEeeccceeee
Q psy7429 193 GSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCE-EPYPDIIFNITLRRKTLFYTVN 271 (555)
Q Consensus 193 ~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~-~~ys~l~~~l~l~R~~~~y~~~ 271 (555)
+||+|+++++++.+..+ .++++++..++||++.+.+..+....|.||+ ++|+++++++++||+++||+++
T Consensus 147 ~S~~y~~~~v~l~~~~~---------~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~y~~~ 217 (370)
T 2bg9_A 147 GIWTYDGTKVSISPESD---------RPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVN 217 (370)
T ss_dssp EESSCCTTTEEEECCCC---------CCSTTSCCTTCSSEEEEEEEEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHH
T ss_pred EEecccCcEEEEEecCC---------CcccccccccceEEEEcceEEEEEEecCCCCCCCeeEEEEEEEEEEccchhhhh
Confidence 99999999999987543 4567888899999999999888888899887 6899999999999999999999
Q ss_pred eccchhhhhhheeeEEeccCCCCCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHHHHHHHhheee
Q psy7429 272 LIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLN 351 (555)
Q Consensus 272 liiP~~li~~ls~~sF~lp~~s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsll~tv~v~~ 351 (555)
+++||+++++++|++||+|+++++|+++++|+||++++++..+++.+|++|+++|+||+|+++||+++++|++++++++|
T Consensus 218 ~~iP~~liv~ls~~sF~lp~~~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~sl~~~~~v~~ 297 (370)
T 2bg9_A 218 VIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSIIVTVVVIN 297 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHheecCCCCCCeEEEeHHHHHHHHHHHHHHHhhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999966999999999999999999999999999
Q ss_pred eeecCCCCCCCCHHHH
Q psy7429 352 VNFRSPVTHVMKPWVH 367 (555)
Q Consensus 352 l~~r~~~~~~~p~w~r 367 (555)
+++|++..|+....++
T Consensus 298 ~~~r~~~~~~~~~~~~ 313 (370)
T 2bg9_A 298 THHRSPSTHSAIEGVK 313 (370)
T ss_dssp HHHCSTTTCCHHHHHH
T ss_pred hhccCcccchHHHHHH
Confidence 9999988775444443
No 6
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=3.1e-66 Score=543.70 Aligned_cols=303 Identities=47% Similarity=0.859 Sum_probs=286.2
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCCC
Q psy7429 33 DEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLK 112 (555)
Q Consensus 33 ~~~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL~ 112 (555)
+++++|+++||++||+.+||+.+.++|+.|++++.+.+|.++||++|.++ +++|++|+|+|+||+
T Consensus 2 ~~~~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~---------------~~~~l~~~W~D~rL~ 66 (370)
T 2bg9_B 2 VMEDTLLSVLFENYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMT---------------TSVFLNLAWTDYRLQ 66 (370)
T ss_dssp TTHHHHHHHHHHHCCTTCCSSCSSSSCCEEEEECCEEEEEEEETTTTEEE---------------EEEECEEEEECTTSC
T ss_pred hHHHHHHHHHHhcCCCCCCCCCCCCCCEEEEEEEEehhhhhhhccccceE---------------EEEEEeeeeECcccC
Confidence 46899999999999999999998899999999999999999999999999 999999999999999
Q ss_pred CCCCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeEEeccccccCCCcccccceeee
Q psy7429 113 WSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKF 192 (555)
Q Consensus 113 Wnp~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f 192 (555)
|||++|+|++.+.++.++||+||++++|++++.++.....++.|++||+|.|.+|+++++.|+||+++||||+|+|.|+|
T Consensus 67 w~~~~~~~i~~l~v~~~~IW~PDi~~~N~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f 146 (370)
T 2bg9_B 67 WDPAAYEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITLHVNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVF 146 (370)
T ss_dssp CCTTTTSSCSEEEEESSSSCCCCEEESSCCCSCEESSSSCEEEEETTSEEEECCEEEEEECCCCTTCSSSTTCCCCEEEE
T ss_pred cCccccCCeeEEEechhhccCCCccccccccccccccccceEEEeCCceEEEEecceEEEEccCcccCCCCCceeeeEEE
Confidence 99999999999999999999999999999998887655678899999999999999999999999999999999999999
Q ss_pred ecccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCCCCCeEEEEEEEEeeccceeeee
Q psy7429 193 GSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYTVNL 272 (555)
Q Consensus 193 ~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~~ys~l~~~l~l~R~~~~y~~~l 272 (555)
+||+|+++++++.+..+ .++++++|..++||++.+.+..+. |.||++.|+++.+++++||+++||++++
T Consensus 147 ~S~~y~~~~i~l~~~~~--------~~~~~~~~~~~~eW~l~~~~~~~~---y~~~~~~y~~l~~~~~l~R~~~~y~~~~ 215 (370)
T 2bg9_B 147 KSYTYDTSEVILQHALD--------AMINQDAFTENGQWSIEHKPSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYT 215 (370)
T ss_dssp EESSCCBTSCEEECSCC--------CCCSTTSCCTTCSSEECCCCEEEC---CCTTSSSBCCEEEECCEECCCCSSHHHH
T ss_pred EeccccccEEEEEeccC--------CccccccccccceEEEeccceEEe---ecCCCCCccEEEEEEEEEEcccceeeee
Confidence 99999999999987211 145678889999999999887665 7889999999999999999999999999
Q ss_pred ccchhhhhhheeeEEeccCCCCCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHHHHHHHhheeee
Q psy7429 273 IIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNV 352 (555)
Q Consensus 273 iiP~~li~~ls~~sF~lp~~s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsll~tv~v~~l 352 (555)
++||+++++++|++||||+++++|+++++|+||++++++..+++.+|++|+++|+||+|+.+||++++++++++++++|+
T Consensus 216 ~iP~~liv~ls~~sFwlp~~~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~sll~~v~v~~~ 295 (370)
T 2bg9_B 216 IVPCILISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLADKVPETSLSVPIIISYLMFIMILVAFSVILSVVVLNL 295 (370)
T ss_dssp HHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhheEEccCCCCceEEEEehHHHHHHHHHHHHHhhCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999779999999999999999999999999999
Q ss_pred eecCCCCCC
Q psy7429 353 NFRSPVTHV 361 (555)
Q Consensus 353 ~~r~~~~~~ 361 (555)
++|++..++
T Consensus 296 ~~r~~~~~~ 304 (370)
T 2bg9_B 296 HHRSPNTHE 304 (370)
T ss_dssp HHTCTTTCC
T ss_pred hccCCCCCc
Confidence 999987775
No 7
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=3.5e-66 Score=543.06 Aligned_cols=302 Identities=44% Similarity=0.810 Sum_probs=287.6
Q ss_pred hhHHHHHHHHHh--cCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecC
Q psy7429 33 DEAKRLYDDLLS--NYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYK 110 (555)
Q Consensus 33 ~~~~~L~~~Ll~--~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~R 110 (555)
+++++|+++||+ +||+.+||+.+.++|+.|++++.+.+|.++||++|.++ +++|++|+|+|+|
T Consensus 2 ~~~~~L~~~Ll~~~~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~---------------~~~~l~~~W~D~r 66 (369)
T 2bg9_C 2 NEEERLINDLLIVNKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLT---------------TNVWMDHAWYDHR 66 (369)
T ss_dssp CSHHHHHHHHTTTTTSCSSSCCSSSSSSCCEEEEEEEEEEEEEEETTTTEEE---------------EEEEEEEEEECTT
T ss_pred chHHHHHHHHhcccCCCCCCCCCCCCCCCEEEEEEEEehhhccccccccceE---------------EEEEEeeeeECCC
Confidence 357899999999 99999999998899999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeEEeccccccCCCccccccee
Q psy7429 111 LKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVM 190 (555)
Q Consensus 111 L~Wnp~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l 190 (555)
|+|||++|+|++.+.++.++||+||++++|++++.++.....++.|++||+|.|.+|+++++.|+||+++||||+|+|+|
T Consensus 67 L~w~~~~~~~i~~l~v~~~~IW~PDi~~~N~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l 146 (369)
T 2bg9_C 67 LTWNASEYSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSL 146 (369)
T ss_dssp TCCCCCCCCTCSCEEECGGGSCCCCEEETTTCSSCCBSSSSCCEEECSSSEEEECCEEEEEECCSCGGGSSSTTCCEEEE
T ss_pred cccCccccCCeeEEEecHHhccCCcEeccccccccccccccccEEEECCccEEEecCEEEEEECcCcccCCCCCceEeeE
Confidence 99999999999999999999999999999999988876656789999999999999999999999999999999999999
Q ss_pred eeecccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeee-cccCCCCCCeEEEEEEEEeecccee
Q psy7429 191 KFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKF-YSCCEEPYPDIIFNITLRRKTLFYT 269 (555)
Q Consensus 191 ~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~-~~~~~~~ys~l~~~l~l~R~~~~y~ 269 (555)
+|+||+|+++++++.+ +.++++|..++||++.+.+..+.... |.||++.|+++.+++++||+++||+
T Consensus 147 ~f~S~~y~~~~i~l~~------------~~~~~~~~~~~ew~l~~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~ 214 (369)
T 2bg9_C 147 KFTALNYNANEISMDL------------IIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYV 214 (369)
T ss_dssp EEEESSCCTTTCEEEC------------CCGGGSCCTTSSEEEEECCEEEEECCCSSCSSCCCEEEEEEEEEEECCSSHH
T ss_pred EEEEecccCceEEEEE------------ecccccceeCCEEEEeeeeEEEEEEecCCCCCCCccEEEEEEEEEEccceeE
Confidence 9999999999999987 23567788899999999998888877 8999999999999999999999999
Q ss_pred eeeccchhhhhhheeeEEeccCCCCCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHHHHHHHhhe
Q psy7429 270 VNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAV 349 (555)
Q Consensus 270 ~~liiP~~li~~ls~~sF~lp~~s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsll~tv~v 349 (555)
+++++||+++++++|++||||+++++|+++++|+||++++++..+++.+|++|+++|+||+|+.+||+++++|+++++++
T Consensus 215 ~~~~iP~~liv~ls~~sF~lp~~~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~sll~~v~v 294 (369)
T 2bg9_C 215 INFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIV 294 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcchHHHHHHHHhheEEecCCCCCeEEEEhHHHHHHHHHHHHHHHhCCCCccCccHHHHHHHHHHHHHHHHHHHHhhe
Confidence 99999999999999999999999999999999999999999999999999999779999999999999999999999999
Q ss_pred eeeeecCCCCCC
Q psy7429 350 LNVNFRSPVTHV 361 (555)
Q Consensus 350 ~~l~~r~~~~~~ 361 (555)
+|+++|++..++
T Consensus 295 ~~~~~r~~~~~~ 306 (369)
T 2bg9_C 295 LNFHFRTPSTHS 306 (369)
T ss_dssp HHHHHCSTTTCC
T ss_pred eeeeccCCCCCc
Confidence 999999987776
No 8
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=1.6e-66 Score=546.08 Aligned_cols=305 Identities=44% Similarity=0.836 Sum_probs=289.0
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCCCC
Q psy7429 34 EAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKW 113 (555)
Q Consensus 34 ~~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL~W 113 (555)
++++|+++||++||+.+||+.+.++|+.|++++.+.+|.++||++|.++ +++|++|+|+|+||+|
T Consensus 2 ~e~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~---------------~~~~l~~~W~D~rL~w 66 (370)
T 2bg9_E 2 EEGRLIEKLLGDYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALT---------------TNVWIEIQWNDYRLSW 66 (370)
T ss_dssp CHHHHHHHHHHHCCSSSCCCSSSSSCCCEEEEEEEEEEEEEETTTTEEE---------------EEEEEEEEEECGGGCC
T ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCEEEEEEEEehhhhchhhccccee---------------EeEEEeeEEECCCcCC
Confidence 5789999999999999999999899999999999999999999999999 9999999999999999
Q ss_pred CCCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeEEeccccccCCCcccccceeeee
Q psy7429 114 SPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFG 193 (555)
Q Consensus 114 np~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~ 193 (555)
||++|+|++.+.++.++||+||++++|++++.++.....++.|++||+|.|.+|+++++.|+||+++||||+|+|+|+|+
T Consensus 67 ~~~~~~~i~~l~v~~~~IW~PDi~~~N~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~ 146 (370)
T 2bg9_E 67 NTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYANVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFR 146 (370)
T ss_dssp CTTTTTTCSCBCCCGGGSCCCCEEESSSCCSCCBSSSSCCCEECSSSEEEECCEEEEEECCCCSSCSSSSSCCBCCEEEE
T ss_pred ChhhcCCeeEEeechhccCCCCEeeccccCCcccccccccEEEECCccEEEecCEEEEEECcccccCCCCCeEEEEEEEE
Confidence 99999999999999999999999999999988876666788999999999999999999999999999999999999999
Q ss_pred cccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeee-cccCCCCCCeEEEEEEEEeeccceeeee
Q psy7429 194 SWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKF-YSCCEEPYPDIIFNITLRRKTLFYTVNL 272 (555)
Q Consensus 194 S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~-~~~~~~~ys~l~~~l~l~R~~~~y~~~l 272 (555)
||+|+++++++.+..+. ++++++|..++||++.+.+..+.... |.||++.|+++.+++++||+++||++++
T Consensus 147 S~~y~~~~i~l~~~~~~--------~~~~~~~~~~~eW~l~~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~ 218 (370)
T 2bg9_E 147 SQTYNAHEVNLQLSAEE--------GIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINI 218 (370)
T ss_dssp ESSSCTTSCCEECCCSC--------CCGGGSCCTTSSEEEEECCCCEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHH
T ss_pred eeccccceeEEEecCCC--------cccHhhcccccEEEEecceeEEEEEecccCCCCCCcEEEEEEEEEEccCceeEEE
Confidence 99999999999985431 45678888999999999988877776 8999999999999999999999999999
Q ss_pred ccchhhhhhheeeEEeccCC-CCCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHHHHHHHhheee
Q psy7429 273 IIPCVGISFLSVLVFYLPSD-SGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLN 351 (555)
Q Consensus 273 iiP~~li~~ls~~sF~lp~~-s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsll~tv~v~~ 351 (555)
++||+++++++|++||||++ +++|+++++|+||++++++..+++.+|++|+.+|+||+|+++||+++++++++++++++
T Consensus 219 ~iP~~liv~ls~~sFwlp~~a~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~sll~~v~v~~ 298 (370)
T 2bg9_E 219 IAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLN 298 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHeEEeccccCcceeEEeeeHHHHHHHHHHHHHHhCCCccCCCChHHHHHHHHHHHHHHHHHHHhhhee
Confidence 99999999999999999999 69999999999999999999999999999966999999999999999999999999999
Q ss_pred eeecCCCCCC
Q psy7429 352 VNFRSPVTHV 361 (555)
Q Consensus 352 l~~r~~~~~~ 361 (555)
+++|++.+++
T Consensus 299 ~~~r~~~~~~ 308 (370)
T 2bg9_E 299 VSLRTPNTHS 308 (370)
T ss_dssp HTTCSTTTCC
T ss_pred eeccCCCCCc
Confidence 9999987776
No 9
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=100.00 E-value=1.6e-65 Score=534.50 Aligned_cols=321 Identities=18% Similarity=0.342 Sum_probs=289.5
Q ss_pred hHHHHHHHHH-hcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCCC
Q psy7429 34 EAKRLYDDLL-SNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLK 112 (555)
Q Consensus 34 ~~~~L~~~Ll-~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL~ 112 (555)
++++|+++|| ++||+.+||+.+.++|+.|++++.+.+|.++||++|.++ +++|++|+|+|+||+
T Consensus 1 ~~~~L~~~Ll~~~Yd~~~RP~~~~~~~v~V~~~l~l~~i~~vde~~~~~t---------------~~~~l~~~W~D~rL~ 65 (347)
T 3rhw_A 1 SDSKILAHLFTSGYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYS---------------AQLTLRESWIDKRLS 65 (347)
T ss_dssp CHHHHHHHHHHSCCCTTSCCCCSSSCCEEEEEEEEEEEEEEEETTTTEEE---------------EEEEEEEEEECGGGC
T ss_pred CHHHHHHHHhhcCCCCCCCCCCCCCCcEEEEEEEEEEeeccccccceeEE---------------EEEEEeeEEECcccC
Confidence 3689999999 999999999999899999999999999999999999999 999999999999999
Q ss_pred CCCCCCCCeeEeee-CCCCeecCceeeccccCCCceeeeee--ceEEEeccEEEEeCCceeEEeccccccCCCcccccce
Q psy7429 113 WSPEEYGGVDTLHV-PSEHIWLPDIVLYNNADGNYEVTIMT--KAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCV 189 (555)
Q Consensus 113 Wnp~e~~~i~~i~v-~~~~IW~Pdi~~~N~~~~~~~~~~~~--~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~ 189 (555)
|||++|++++.+.+ +.++||+||++++|++++.++..... .++|++||+|.|.+|+++++.|+||+++||||+|+|+
T Consensus 66 w~p~~~~~~~~l~~~~~~~IW~PDi~l~N~~~~~~~~~~~~n~~v~i~~~G~V~~~~~~~~~s~C~~dl~~FPfD~Q~C~ 145 (347)
T 3rhw_A 66 YGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCS 145 (347)
T ss_dssp SSTTCSSSCSEEECCTTCCCCCCCEECTTEEEEEECCSSSCSEEEEEETTSEEEEEEEEEEEEECCCCCTTGGGCEEEEE
T ss_pred CCCccCCCceEEEecchhceecCCEeeeccccccccccccccEEEEEeCCCCEEEecceEEEEEeeeeeccCCCcceeEE
Confidence 99999999998876 78999999999999988776543333 3678999999999999999999999999999999999
Q ss_pred eeeecccccCceEEEEEccCCCCCCceeecccccc--ccccceeEEeeeeeEEeeeecccCCCCCCeEEEEEEEEeeccc
Q psy7429 190 MKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQD--YYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLF 267 (555)
Q Consensus 190 l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~--~~~~~eW~l~~~~~~~~~~~~~~~~~~ys~l~~~l~l~R~~~~ 267 (555)
|+|+||+|+++++++.+..+. .+...+ ....+||++.+.........+. .+.|+++.+++++||+++|
T Consensus 146 l~f~S~~y~~~~v~l~~~~~~--------~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~--~~~y~~l~~~~~l~R~~~~ 215 (347)
T 3rhw_A 146 IDLASYAYTTKDIEYLWKEHS--------PLQLKVGLSSSLPSFQLTNTSTTYCTSVTN--TGIYSCLRTTIQLKREFSF 215 (347)
T ss_dssp EEEEESSCCTTTEEEEECSSC--------SEEECTTSGGGCCSEEEEEEEEEECCEECS--SCEECEEEEEEEEEECSHH
T ss_pred EEeccCcCChhhEEEEecCCC--------ceeecCcceeEccceEEeeEEeeEeeeeec--ccceeEEEEEEEEEEEeeE
Confidence 999999999999999986432 111222 3456899999987665554433 6789999999999999999
Q ss_pred eeeeeccchhhhhhheeeEEeccCCC-CCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHHHHHHH
Q psy7429 268 YTVNLIIPCVGISFLSVLVFYLPSDS-GEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVT 346 (555)
Q Consensus 268 y~~~liiP~~li~~ls~~sF~lp~~s-~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsll~t 346 (555)
|++++++||+++++++|++||+|+++ ++|++|++|+||++++++..+++.+|++| ++|+||+|+++||++++++++++
T Consensus 216 y~~~l~iP~~li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~~~~~lP~~S-~v~~id~~~~~~~~~v~~slle~ 294 (347)
T 3rhw_A 216 YLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVS-YIKAIDVWIGACMTFIFCALLEF 294 (347)
T ss_dssp HHHHTHHHHHHHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHTSCCCS-SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeehhHHHHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHHHHhhCCCcc-ceeHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 89999999999999999999999999999 69999999999999999999999
Q ss_pred hheeeeeecCCCC-CCCCHHHHHHHHhhccceeee
Q psy7429 347 IAVLNVNFRSPVT-HVMKPWVHKVFIEVLPKILFI 380 (555)
Q Consensus 347 v~v~~l~~r~~~~-~~~p~w~r~~f~~~l~~~l~~ 380 (555)
+++.+++++++.. +++|+|++++++..+|.++++
T Consensus 295 ~~v~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~i 329 (347)
T 3rhw_A 295 ALVNHIANAGTTEWNDISKRVDLISRALFPVLFFV 329 (347)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCcchhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999877544 589999999999999998776
No 10
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=100.00 E-value=7.2e-63 Score=509.28 Aligned_cols=298 Identities=19% Similarity=0.309 Sum_probs=277.2
Q ss_pred cCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCCCCCCCCCCCeeEe
Q psy7429 45 NYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTL 124 (555)
Q Consensus 45 ~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL~Wnp~e~~~i~~i 124 (555)
.+|+++||. ++++|+.|++++.+.+|.++||++|.++ +++|++|+|+|+||+|||++|+ ++.+
T Consensus 6 q~d~~~RP~-~~~~~v~V~~~~~l~~i~~vde~~~~~t---------------~~~~l~~~W~D~rL~w~~~~~~-i~~~ 68 (321)
T 3tlw_A 6 QDMVSPPPP-IADEPLTVNTGIYLIESYSLDDCAETFK---------------VNAFLSLSWKDRRLAFDPVRSG-VRVK 68 (321)
T ss_dssp ---CCCCCC-SSSCCEEEEEEEEEEEEEEEETTTTEEE---------------EEEEEEEEEECGGGCCCSTTTC-CSSE
T ss_pred cCCCccCCC-CCCCCEEEEEEEEEEeecceeccCcEEE---------------EEEEEeeEEECcccCCCCccCC-eeee
Confidence 579999996 6789999999999999999999999999 9999999999999999999999 9999
Q ss_pred eeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeEEeccccccCCCcccccceeeeecccccCceEEE
Q psy7429 125 HVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDL 204 (555)
Q Consensus 125 ~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l 204 (555)
.++.++||+||++++|++++. ......++|++||+|.|.+|+++++.|+||+++||||+|+|+|+|+||+|+++++++
T Consensus 69 ~~~~~~IW~PDi~l~N~~~~~--~~~~~~~~v~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l 146 (321)
T 3tlw_A 69 TYEPEAIWIPEIRFVNVENAR--DADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 146 (321)
T ss_dssp ECCGGGSCCCCEEESSBSSCC--EEEEEEEEECTTCEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEEECCSSCCEEE
T ss_pred cccccCeEcCcEEeecccccc--cccceeEEEeCCccEEEecceEEEEEEEeecccCCCCceeEeEEEecccCChhhEEE
Confidence 999999999999999999887 444567899999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCCCCCeEEEEEEEEeeccceeeeeccchhhhhhhee
Q psy7429 205 KHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYTVNLIIPCVGISFLSV 284 (555)
Q Consensus 205 ~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~~ys~l~~~l~l~R~~~~y~~~liiP~~li~~ls~ 284 (555)
.+..+ ..+.+++..++||++.+....+....|.|+++.|+++.+++++||+++||++++++||+++++++|
T Consensus 147 ~~~~~---------~~~~~~~~~~~ew~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~ 217 (321)
T 3tlw_A 147 AVDLE---------KVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISW 217 (321)
T ss_dssp EECGG---------GCEECTTCCBTTEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCTTHHHHTHHHHHHHHHHHG
T ss_pred EEcCC---------cccccccccccceEEEeeEeEEeeEEecCCCCceeEEEEEEEEEEeeceeehhHHHHHHHHHHHhh
Confidence 98643 344567778999999999988888888889999999999999999999999999999999999999
Q ss_pred eEEeccCCCCCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHHHHHHHhheeeeeecCCCCC--CC
Q psy7429 285 LVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTH--VM 362 (555)
Q Consensus 285 ~sF~lp~~s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsll~tv~v~~l~~r~~~~~--~~ 362 (555)
++|| |.++++|+++++|+||++++++..+++.+|++| ++|+||+|+++||+++++++++++++.++++|++..+ ++
T Consensus 218 ~sF~-p~~~~~Rv~l~it~lL~~t~~~~~~~~~lP~~s-~vp~i~~~~~~~~~~v~~sll~~v~v~~l~~~~~~~~a~~~ 295 (321)
T 3tlw_A 218 TAFW-STSYEANVTLVVSTLIAHIAFNILVETCLPKTP-YMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASI 295 (321)
T ss_dssp GGGG-CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred eeec-cCCCCCcEEEEhhHHHHHHHHHHHHHhhCCCcc-ccHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCcccccccc
Confidence 9999 888899999999999999999999999999999 5999999999999999999999999999999887665 79
Q ss_pred CHHHHHHHHh
Q psy7429 363 KPWVHKVFIE 372 (555)
Q Consensus 363 p~w~r~~f~~ 372 (555)
|+|+|++|.-
T Consensus 296 p~w~r~~fp~ 305 (321)
T 3tlw_A 296 TRASRIAFPV 305 (321)
T ss_dssp HHHHHHHHHH
T ss_pred ChhheeeehH
Confidence 9999999864
No 11
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=100.00 E-value=6.9e-60 Score=487.21 Aligned_cols=295 Identities=17% Similarity=0.264 Sum_probs=262.9
Q ss_pred CCCCCCC--cEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCCCCCCCCCCCeeEe-----
Q psy7429 52 PVGNNSD--KLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTL----- 124 (555)
Q Consensus 52 P~~~~~~--pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL~Wnp~e~~~i~~i----- 124 (555)
|+.|.++ |+.|++++.+.+|.++||++|.++ +++|++|+|+|+||+|+ +++.+
T Consensus 2 Pv~n~s~~~pv~V~~~~~l~~i~~vde~~~~~t---------------~~~~l~~~W~D~rL~~~-----~~~~l~l~~~ 61 (322)
T 3rqw_A 2 PADNAADARPVDVSVSIFINKIYGVNTLEQTYK---------------VDGYIVAQWTGKPRKTP-----GDKPLIVENT 61 (322)
T ss_dssp ---------CEEEEEEEEEEEEEEEETTTTEEE---------------EEEEEEEEEECSCCCCS-----TTSCEEEETH
T ss_pred CcCCCCCCCCEEEEEEEEEEeeccccccCcEEE---------------EEEEEeeEEechhhCCC-----CCCceeecch
Confidence 6777776 999999999999999999999999 99999999999999984 45555
Q ss_pred ---eeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeEEeccccccCCCcccccceeeeecccccCce
Q psy7429 125 ---HVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYT 201 (555)
Q Consensus 125 ---~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~ 201 (555)
+++.++||+||++++|++++.+ .....++|++||+|.|.+|+++++.|+||+++||||+|+|+++|+||+|++++
T Consensus 62 ~~~~ip~~~IW~Pdi~l~N~~~~~~--~~~~~~~i~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~ 139 (322)
T 3rqw_A 62 QIERWINNGLWVPALEFINVVGSPD--TGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQ 139 (322)
T ss_dssp HHHHHHHTTCCCCCEEETTBSSCCE--EEEEEEEECTTSEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEESSCSSEE
T ss_pred hhcccccccccCCcEEEEcccCccc--ccceeEEEeCCcCEEEeeceeEEEeccccccCCCCCCcEEEEEEEEcccCcce
Confidence 5568999999999999999887 45578999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCceeeccccccccccceeEE-eeeeeE------EeeeecccCCCCCCeEEEEEEEEeeccceeeeecc
Q psy7429 202 VDLKHILQGPDSDKIDIGIDLQDYYLSVEWDI-MKVPAV------RNEKFYSCCEEPYPDIIFNITLRRKTLFYTVNLII 274 (555)
Q Consensus 202 v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l-~~~~~~------~~~~~~~~~~~~ys~l~~~l~l~R~~~~y~~~lii 274 (555)
+++.+..+.. ..+.++ .++||++ .+.... ++...|.||++.|+++.+++++||+++||++++++
T Consensus 140 v~l~~~~~~~-------~~~~~~--~~~ew~l~~~~~~~~~~~~y~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~i 210 (322)
T 3rqw_A 140 LRFSDIQVYT-------ENIDNE--EIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFIL 210 (322)
T ss_dssp EEEEEEECCS-------CSSSSC--SSSSEEECCSCEECCEEEECTTSCCSSSSCCEEEEEEEEEEEEECCHHHHHHTHH
T ss_pred EEEEECCCcc-------cccCCC--CCCceEEEeeeEEEeeccccceeeeccCCCCCeEEEEEEEEEEEeeeeeeehHHH
Confidence 9999854321 012223 5789999 888877 56667888899999999999999999999999999
Q ss_pred chhhhhhheeeEEeccCCCCCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHHHHHHHhheeeeee
Q psy7429 275 PCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNF 354 (555)
Q Consensus 275 P~~li~~ls~~sF~lp~~s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsll~tv~v~~l~~ 354 (555)
||+++++++|++||+| ++++|+++++|++|++++++..+++.+|++| ++|+||+|+.+||+++++++++++++.++++
T Consensus 211 P~~li~~ls~~sF~lp-~~~~Rv~l~it~lL~~~~~~~~~~~~lP~~s-~vp~i~~~~~~~~~~v~~sll~~~~v~~l~~ 288 (322)
T 3rqw_A 211 PLGLIIAASWSVFWLE-SFSERLQTSFTLMLTVVAYAFYTSNILPRLP-YTTVIDQMIIAGYGSIFAAILLIIFAHHRQA 288 (322)
T ss_dssp HHHHHHHHHHGGGGCS-SHHHHHHHHHHHHHHHHHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhccC-CCCCcEEEEEehHHHHHHHHHHHhhhCCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999 7799999999999999999999999999999 6999999999999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHhhccceee
Q psy7429 355 RSPVTHVMKPWVHKVFIEVLPKILF 379 (555)
Q Consensus 355 r~~~~~~~p~w~r~~f~~~l~~~l~ 379 (555)
|++..+++|+|+|++|+..+.++++
T Consensus 289 ~~~~~~~~p~w~r~~fl~~~~~~~~ 313 (322)
T 3rqw_A 289 NGVEDDLLIQRCRLAFPLGFLAIGC 313 (322)
T ss_dssp SSSCCCHHHHTCTTHHHHHHHHTTS
T ss_pred cCccccCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999988755543
No 12
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=100.00 E-value=2.7e-48 Score=373.12 Aligned_cols=203 Identities=23% Similarity=0.491 Sum_probs=188.8
Q ss_pred ChhHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCC
Q psy7429 32 NDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKL 111 (555)
Q Consensus 32 ~~~~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL 111 (555)
+.++++|+++||++||+.+||+.+ ++|+.|++++.+.+|.++||++|.++ +++|++|+|+|+||
T Consensus 2 ~~~e~~L~~~Ll~~Yn~~~rPv~~-~~pv~V~~~l~l~~i~~vde~~q~~~---------------~~~wl~~~W~D~rL 65 (205)
T 4aoe_A 2 KKSREEIVKEILGRANPNNIPIVD-EQPVKVSFKYSLQDIYTADVGTDQVE---------------LGLWLVISWKDRSL 65 (205)
T ss_dssp CHHHHHHHHHHHHTTCCSSCCCCS-SCCEEEEEEEEEEEEEEEETTTTEEE---------------EEEEEEEEEECCCC
T ss_pred cHHHHHHHHHHHhhcCCCCCCCCC-CccEEEEEEEEEEEeeeEcccCCEEE---------------EEEEEEEEEECCcc
Confidence 457899999999999999999987 68999999999999999999999999 99999999999999
Q ss_pred CCCCCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeEEeccccccCCCcccccceee
Q psy7429 112 KWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMK 191 (555)
Q Consensus 112 ~Wnp~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~ 191 (555)
+||+ +|+|++.++++.++||+||++++|+++... ......+.|++||+|.|.+|++++++|.|| .+||||+|+|.|+
T Consensus 66 ~W~~-~~~~i~~i~v~~~~IW~PDi~l~N~~~~~~-~~~~~~v~v~~~G~V~~~~~~~~~s~C~~d-~~fPfD~Q~C~l~ 142 (205)
T 4aoe_A 66 SWSN-ECTTFNELTLPSKYIWLPHIEVYNSIGKPG-IHSDQLVRVYKDGTVTFVPQYTIRFSCALE-NVTTEQGAACTLK 142 (205)
T ss_dssp CCSC-CCSCCCEEEEEGGGSCCCCCEETTBSSCCE-ECSCCEEEEETTSEEEECCEEEEEEECCCT-TSSSSSCEEEEEE
T ss_pred ccCC-cCCCccEEEeCHHHhccccEEEeccccccc-cccceEEEEeCCcEEEEeCcEEEEEecccC-cCCCccCCeEEEE
Confidence 9997 799999999999999999999999986543 334467899999999999999999999999 8999999999999
Q ss_pred eecccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCCCCCeEEEEEEEEe
Q psy7429 192 FGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRR 263 (555)
Q Consensus 192 f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~~ys~l~~~l~l~R 263 (555)
||||+|++.++++.... ++++++|..++||++.+.++.++...|.||+++|++++|+|+|||
T Consensus 143 fgSw~y~~~~l~l~~~~----------~~dl~~~~~n~EW~l~~~~~~r~~~~Y~CC~~~y~dit~~i~lrR 204 (205)
T 4aoe_A 143 FGPWTYDVRDLVLDESQ----------QVDLTTYAGGERFQLIEAKQKVNKKTYPCCPQSFEDIELRVTFKK 204 (205)
T ss_dssp EECSSCCTTTEEEECSS----------SCBCTTSCTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred EECccCChheEEEecCc----------ccchhccccCCcEEEEeeEEEEEEEEeCCCCCCcceEEEEEEEEE
Confidence 99999999999986421 467889999999999999999999999999999999999999999
No 13
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=100.00 E-value=7.4e-48 Score=373.76 Aligned_cols=210 Identities=46% Similarity=0.915 Sum_probs=198.7
Q ss_pred ChhHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCC
Q psy7429 32 NDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKL 111 (555)
Q Consensus 32 ~~~~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL 111 (555)
++.+++|+++||++||+.+||+.+.++|+.|++++.+.+|.++||++|.++ +++|++|.|+|+||
T Consensus 2 ~~~~~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~~~~~l~~i~~v~e~~~~~~---------------~~~~~~~~W~D~rL 66 (212)
T 2qc1_B 2 SEHETRLEAKLFEDYSSVVRPVEDHREIVQVTVGLQLIQLINVDEVNQIVT---------------TNVRLKQQWVDYNL 66 (212)
T ss_dssp CHHHHHHHHHHHTTCCSSSCSCSSTTSCEEEEEEEEEEEEEEEETTTTEEE---------------EEEEEEEEEECTTC
T ss_pred ChHHHHHHHHHHHhCCCCCCCccCCCCcEEEEEEEEEecccccccCCcEEE---------------EEEEEeeEEECCCc
Confidence 357899999999999999999999899999999999999999999999999 99999999999999
Q ss_pred CCCCCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeEEeccccccCCCcccccceee
Q psy7429 112 KWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMK 191 (555)
Q Consensus 112 ~Wnp~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~ 191 (555)
+|||++|+|++.+.++.++||+||++++|++++.++......++|++||+|.|.+|+++++.|+||+++||||+|+|.|+
T Consensus 67 ~w~~~~~~~i~~l~~~~~~iW~PDi~~~N~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~ 146 (212)
T 2qc1_B 67 KWNPDDYGGVKKIHIPSEKIWRPDVVLYNNADGDFAIVKFTKVLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMK 146 (212)
T ss_dssp CCCGGGGTTCCEEEECGGGSCCCCEEECCBTTTSSCEECCCCEEEETTCEEEECCEEEEEEEEEECCSSSSCCEEEEEEE
T ss_pred ccChhhcCCeeEEEcchhhccCCceeccccccccccccceeeEEEECCeeEEEEeeeEEEEEccceeecCCCCceEEeEE
Confidence 99999999999999999999999999999999988766567899999999999999999999999999999999999999
Q ss_pred eecccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCC-CCCCeEEEEEEEEeec
Q psy7429 192 FGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCE-EPYPDIIFNITLRRKT 265 (555)
Q Consensus 192 f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~-~~ys~l~~~l~l~R~~ 265 (555)
|+||+|++.++++.+..+ .+++.+|..++||++.+....+....|.||+ ++|++++++|+|||++
T Consensus 147 f~S~~y~~~~v~l~~~~~---------~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~~y~~i~~~~~l~R~p 212 (212)
T 2qc1_B 147 LGTRTYDGSAVAINPESD---------QPDLSNFMESGEWVIKEARGWKHWVFYSCCPTTPYLDITYHFVMQRLP 212 (212)
T ss_dssp EEESSCCTTTEEEEESCS---------SCBCTTCCCCSSEEEEEEEEEEEEEEETTCSSCCEEEEEEEEEEEECC
T ss_pred EEcccccCceEEEEeccc---------ccchhhCccCCCEEEEEeEEEEEEEecCCCCCCCeeEEEEEEEEEECc
Confidence 999999999999998643 4567889999999999999999999999998 8999999999999986
No 14
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=100.00 E-value=7.9e-48 Score=370.36 Aligned_cols=203 Identities=25% Similarity=0.512 Sum_probs=189.0
Q ss_pred ChhHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCC
Q psy7429 32 NDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKL 111 (555)
Q Consensus 32 ~~~~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL 111 (555)
...+++|+++||++||+.+||+.+ ++|+.|++++.+.+|.++||++|.++ +++|++|.|+|+||
T Consensus 2 ~~~~~~L~~dLl~~Y~~~~rPv~~-~~pv~V~~~l~l~~i~~vde~~q~~t---------------~~~wl~~~W~D~rL 65 (205)
T 4aod_A 2 RRSRSEILQDVLSRCSPLNIPIED-DQPVKVSFEYSLQKIFRADVENDEVD---------------IGLWTTLVWKDRCL 65 (205)
T ss_dssp CHHHHHHHHHHHHTTCSSSCCCCS-SCCEEEEEEEEEEEEEEEETTTTEEE---------------EEEEEEEEEECCCC
T ss_pred chhHHHHHHHHHhcCCCcCCCCCC-CccEEEEEEEEeeeeeeecccCCEEE---------------EEEEEEEEEECCce
Confidence 456899999999999999999876 78999999999999999999999999 99999999999999
Q ss_pred CCCCCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeEEeccccccCCCcccccceee
Q psy7429 112 KWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMK 191 (555)
Q Consensus 112 ~Wnp~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~ 191 (555)
+||+ +|+|++.++++.++||+||++++|+++.. .......+.|++||+|.|.+|++++++|+||+++|||| |+|.|+
T Consensus 66 ~W~~-~~~~i~~i~v~~~~IW~PDi~l~N~~~~~-~~~~~~~~~v~~~G~V~~~~~~~~~s~C~~d~~~fPfD-Q~C~l~ 142 (205)
T 4aod_A 66 NWFN-EFTSFKELTVPIAEIWTPDIFIFDSVGAP-EIFSDKLARVSQDGTVTYVPQLKVRLSCPLADLKLETG-VTCSLK 142 (205)
T ss_dssp CCSC-CCSCCCEEEEEGGGSCCCCEEETTBSSCC-EECSCCEEEEETTSEEEECCEEEEEEECCCTTSSSSSC-EEEEEE
T ss_pred eeCC-cCCCccEeeccHHhcCcCCEEEEcccccc-eeecceEEEEecCCEEEEeccEEEEEEecCccccCCCC-cEEEEE
Confidence 9997 79999999999999999999999998754 33345678999999999999999999999999999999 999999
Q ss_pred eecccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCCCCCeEEEEEEEEe
Q psy7429 192 FGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRR 263 (555)
Q Consensus 192 f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~~ys~l~~~l~l~R 263 (555)
||||+|++.++++.+.. ++++++|..++||++.+.++.++...|.||+++|++++|+|+|||
T Consensus 143 fgSw~y~~~~i~l~~~~----------~~dl~~~~~n~EW~l~~~~~~~~~~~Y~cc~~~Y~~it~~~~lrR 204 (205)
T 4aod_A 143 SGSWTHSTQELTLEVNA----------KVDLGDYASDTRFQLLNATQQVNRKQYPCCPETYEDTTLSFTFRK 204 (205)
T ss_dssp EEESSCCTTTEEEECSS----------SCBCTTSCTTCSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEC
T ss_pred EECccccccEEEEEECC----------CcccccccccCCEEEEeeEEEEEEEEeCCCCCCcceEEEEEEEEC
Confidence 99999999999998632 467889999999999999999999999999999999999999977
No 15
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=100.00 E-value=4.9e-47 Score=365.48 Aligned_cols=200 Identities=33% Similarity=0.674 Sum_probs=188.3
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCCCC
Q psy7429 34 EAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKW 113 (555)
Q Consensus 34 ~~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL~W 113 (555)
++++|+++||++||+.+||+.+. +|+.|++++.+.+|.++||++|.++ +++|++|.|+|+||+|
T Consensus 2 ~e~~L~~~Ll~~Yd~~~RP~~~~-~~v~V~~~~~l~~i~~v~e~~~~~t---------------~~~~~~~~W~D~rL~w 65 (204)
T 3sq6_A 2 FQRKLYKELVKNYNPDVIPTQRD-RPVTVYFSLSLLQIMDVDEKNQVVD---------------VVFWLQMSWTDHYLQW 65 (204)
T ss_dssp CCCHHHHHHTTTCCTTSCCCCSS-CCEEEEEEEEEEEEEEEETTTTEEE---------------EEEEEEEEEECGGGCC
T ss_pred HHHHHHHHHHhcCCCCCCCCCCC-CcEEEEEEEEhhheeehhccccEEE---------------EEEeeeeEEECCCccc
Confidence 46799999999999999999887 9999999999999999999999999 9999999999999999
Q ss_pred CCCCCCCeeEeeeCCCCeecCceeeccccC--CCceeeeeeceEEEeccEEEEeCCceeEEeccccccCCCcccccceee
Q psy7429 114 SPEEYGGVDTLHVPSEHIWLPDIVLYNNAD--GNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMK 191 (555)
Q Consensus 114 np~e~~~i~~i~v~~~~IW~Pdi~~~N~~~--~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~ 191 (555)
||++|+|++.+.++.++||+||++++|+++ +.++.. .++|++||+|.|.+|+++++.|+||+ +||||+|+|.|+
T Consensus 66 ~~~~~~~i~~i~~~~~~iW~PDi~~~N~~~~~~~~~~~---~v~v~~~G~V~~~~~~~~~~~C~mdl-~fPfD~Q~C~l~ 141 (204)
T 3sq6_A 66 NVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQ---LALVNSSGHVQYLPSIRQRFSCDVSG-VDTESGATCKLK 141 (204)
T ss_dssp CTTTSSSCCEEEEEGGGSCCCCEEETTBSSCCEECSCC---EEEEETTSEEEECCEEEEEEECCCGG-GSSSSCEEEEEE
T ss_pred ChHHcCCccEEEcCHHHCcCCCEEeEcccccCCccccc---EEEEEeCCEEEEecCeeEEEeccccc-cCCCCCcEEEEE
Confidence 999999999999999999999999999998 555432 88999999999999999999999999 999999999999
Q ss_pred eecccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCCCCCeEEEEEEEEee
Q psy7429 192 FGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264 (555)
Q Consensus 192 f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~~ys~l~~~l~l~R~ 264 (555)
|+||+|++.++++.+. ..+++++..++||++.+.++.+....|.||+++|++++|+|+|||+
T Consensus 142 f~S~~y~~~~v~l~~~-----------~~~~~~~~~~~eW~l~~~~~~~~~~~y~~c~~~y~~i~~~~~lrRr 203 (204)
T 3sq6_A 142 FGSWTHHSRELDLQMQ-----------EADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKK 203 (204)
T ss_dssp EEESSCCTTTEEEECC-----------CCCCTTSCSSSSEEEEEEEEEEEEEECSSSSSEEEEEEEEEEEEEC
T ss_pred EEeecccCeEEEEEec-----------cCCHHHcccCCCEEEEEeEEEEEEEeeCCCCCCcceEEEEEEEEEC
Confidence 9999999999999752 2456788899999999999999999999999999999999999997
No 16
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=100.00 E-value=1.7e-46 Score=367.33 Aligned_cols=213 Identities=33% Similarity=0.605 Sum_probs=192.3
Q ss_pred CChhHHHHHHHHHhcCCCCCC---CCCCCCCcEEEEEEEEEeeeehhccc----cceeeeeeeeecccccceeEEEEEEe
Q psy7429 31 GNDEAKRLYDDLLSNYNRLIR---PVGNNSDKLTVKMGLKLSQLIEVNLK----NQIMTTNVWVNQNLKNQIMTTNVWVN 103 (555)
Q Consensus 31 ~~~~~~~L~~~Ll~~Yd~~~r---P~~~~~~pv~V~v~l~l~~i~~vde~----~~~~t~~~~~~~~~~~~~~~~~~~l~ 103 (555)
.++.+++|+++||++||+.+| |+.+.++|+.|++++.+.+|.++||+ +|.++ +++|++
T Consensus 2 ~~~~e~~L~~~Ll~~Yd~~~R~~~P~~~~~~pv~V~~~l~l~~i~~v~E~~~~~~~~~t---------------~~~~l~ 66 (230)
T 4afh_A 2 NGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGT---------------FKAIVK 66 (230)
T ss_dssp BHHHHHHHHHHHHHHHHHHCSCSCSCSSBCCCEEEEEEEEEEEEEEEEECTTSSEEEEE---------------EEEEEE
T ss_pred CchHHHHHHHHHHhhcChhhccCCCCCCCCCCEEEEEEEEHhHhhhhhhcccccCcEEE---------------EEEEEe
Confidence 345789999999999999999 99998999999999999999999999 88888 999999
Q ss_pred cEEEecCCCCCCCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeEEeccccccCCCc
Q psy7429 104 QEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPF 183 (555)
Q Consensus 104 ~~W~D~RL~Wnp~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPf 183 (555)
|.|+|+||+|||++|+|++.+.++.++||+||++++|++++.++.....+++|++||+|.|.+|+++++.|+| ||
T Consensus 67 ~~W~D~rL~wnp~~~~~i~~i~l~~~~IW~PDi~l~N~~~~~~~~~~~~~v~v~~~G~V~~~~~~~~~s~C~m-----Pf 141 (230)
T 4afh_A 67 LSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVS-----QD 141 (230)
T ss_dssp EEEECGGGCCCCCTTSCCSEEEECGGGSCCCCEEETTCSSSSCEECTTSCEEEETTSEEEECCEEEEEEEEEE-----ET
T ss_pred eEEECccccCCcccCCCeeEEEeccCCEECCcEEEEecccccccccccceEEEEcCCEEEEecCEEEEEECCC-----CC
Confidence 9999999999999999999999999999999999999999988765567899999999999999999999999 99
Q ss_pred ccccceeeeecccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCCCCCeEEEEEEEEe
Q psy7429 184 DVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRR 263 (555)
Q Consensus 184 D~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~~ys~l~~~l~l~R 263 (555)
|+|+|.|+|+||+|++.++++.+..+.. ++++ +|..++ |++.+.++.+....|.||+++|++++|+|+|||
T Consensus 142 D~Q~C~l~f~S~~y~~~~v~l~~~~~~~-------~~d~-~~~~n~-W~l~~~~~~~~~~~y~cc~~~y~~i~f~~~irR 212 (230)
T 4afh_A 142 DVDSCHFQFGSWVYSVDEVDIHFMDDKA-------EVLL-DFYQDS-LEILENSAQRQEVVYPCCESAYVEMKYLLALRS 212 (230)
T ss_dssp TEEEEEEEEEESSCCTTTEEEEEGGGCC-------SCBC-TTCCCC-CCEEEEEEEEEEECCTTCSSCEEEEEEEEEEEC
T ss_pred CcccCCEeeccccccCceEEEEECCCCc-------ccce-eeecCc-EEEEEEEEEEEEEecCCCCCCccEEEEEEEEEE
Confidence 9999999999999999999999975421 4567 888999 999999999999999999999999999999999
Q ss_pred eccceeeee
Q psy7429 264 KTLFYTVNL 272 (555)
Q Consensus 264 ~~~~y~~~l 272 (555)
+++||+.+-
T Consensus 213 rpl~~~~~~ 221 (230)
T 4afh_A 213 ENGNSTYSR 221 (230)
T ss_dssp C--------
T ss_pred eechhhccc
Confidence 999998764
No 17
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=100.00 E-value=1.8e-45 Score=360.53 Aligned_cols=213 Identities=29% Similarity=0.597 Sum_probs=192.5
Q ss_pred CChhHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecC
Q psy7429 31 GNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYK 110 (555)
Q Consensus 31 ~~~~~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~R 110 (555)
+.+.+++|+++||++||+. |+.+.++|+.|++++.+.+|.++||++|.++ +++|++|.|+|+|
T Consensus 11 ~~~~~~~L~~~Ll~~Yd~~--P~~~~~~pv~V~~~~~l~~i~~v~e~~~~~~---------------~~~~l~~~W~D~r 73 (228)
T 2wn9_A 11 SQANLMRLKSDLFNRSPMY--PGPTKDDPLTVTLGFTLQDIVKADSSTNEVD---------------LVYYEQQRWKLNS 73 (228)
T ss_dssp HHHHHHHHHHHHHTSSCCC--CCCBTTBCEEEEEEEEEEEEEEEETTTTEEE---------------EEEEEEEEEEEEE
T ss_pred CCcHHHHHHHHHHhhcCCC--cccCCCCCEEEEEEEEhhHhhhhhccccEEE---------------EEEEEEEEEECCC
Confidence 3467899999999999999 9888899999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeEEecc---ccccCCCccccc
Q psy7429 111 LKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCE---IDVEYFPFDVQT 187 (555)
Q Consensus 111 L~Wnp~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~---~dl~~FPfD~Q~ 187 (555)
|+|||++|+|++.+.++.++||+||++++|++++.++.. ...++|++||+|.|.+|+++++.|+ ||++ |+|+
T Consensus 74 L~w~~~~y~~i~~l~~~~~~IW~PDi~l~N~~~~~~~~~-~~~v~i~~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~ 148 (228)
T 2wn9_A 74 LMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLS-PQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSE----EGAT 148 (228)
T ss_dssp EECCGGGGTTCCEEEEEGGGSCCCCEEESSBSSCCEECS-CCEEEEETEEEEEECCEEEEEEECCCTTTTST----TCEE
T ss_pred ccCCchhcCCeeEEEecHHHccCCceecccccccccccc-cceEEEeCCeEEEEeCCEEEEEECCCCCCCCC----cCcE
Confidence 999999999999999999999999999999999988765 6789999999999999999999999 9999 9999
Q ss_pred ceeeeecccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCCCCCeEEEEEEEEeeccc
Q psy7429 188 CVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLF 267 (555)
Q Consensus 188 C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~~ys~l~~~l~l~R~~~~ 267 (555)
|.|+|+||+|++.++++.+..+ .++++++..++||++.+.++.+....|.||+++|++++++|+|||+++|
T Consensus 149 C~l~f~Sw~y~~~~i~l~~~~~---------~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~f 219 (228)
T 2wn9_A 149 CAVKFGSWVYSGFEIDLKTDTD---------QVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRAG 219 (228)
T ss_dssp EEEEEEESSCCTTTEEEECSCS---------BCBCTTCCTTCSEEEEEEEEEEEEECCSSCSSCEEEEEEEEEEEECC--
T ss_pred eeEEEEeecccccEEEEEecCC---------ccchhhceecCCEEEEEEEEEEEEEeecCCCCCeeEEEEEEEEEEeccc
Confidence 9999999999999999998542 4567888899999999999999998999999999999999999999999
Q ss_pred eeeeecc
Q psy7429 268 YTVNLII 274 (555)
Q Consensus 268 y~~~lii 274 (555)
|++++++
T Consensus 220 Yii~lil 226 (228)
T 2wn9_A 220 NGFFRNL 226 (228)
T ss_dssp -------
T ss_pred eEEEEEE
Confidence 9999875
No 18
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=100.00 E-value=2.2e-44 Score=349.08 Aligned_cols=205 Identities=24% Similarity=0.497 Sum_probs=190.1
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCCCC
Q psy7429 34 EAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKW 113 (555)
Q Consensus 34 ~~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL~W 113 (555)
++++|+++||++||+.+||+ +.++|+.|++++.+.+|.++||++|.++ +++|++|.|+|+||+|
T Consensus 3 ~~~~ll~~Ll~~Yd~~~RP~-~~~~~~~V~~~~~l~~i~~v~e~~~~~~---------------~~~~~~~~W~D~rL~w 66 (211)
T 1uw6_A 3 DRADILYNIRQTSRPDVIPT-QRDRPVAVSVSLKFINILEVNEITNEVD---------------VVFWQQTTWSDRTLAW 66 (211)
T ss_dssp CHHHHHHHHHHHCCTTSCCC-CTTCCEEEEEEEEEEEEEEEETTTTEEE---------------EEEEEEEEEECGGGCC
T ss_pred cHHHHHHHHHHcCCCcCCCC-CCCCcEEEEEEEEHHHhhchhhhCcEEE---------------EEEEEEeEeECccccc
Confidence 57899999999999999999 8889999999999999999999999999 9999999999999999
Q ss_pred CCCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeEEecc---ccccCCCccccccee
Q psy7429 114 SPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCE---IDVEYFPFDVQTCVM 190 (555)
Q Consensus 114 np~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~---~dl~~FPfD~Q~C~l 190 (555)
||++|++ .+.++.++||+||++++|++++. .......++|++||+|.|.+|+++++.|+ ||++ |+|+|.|
T Consensus 67 ~~~~~~~--~l~~~~~~iW~PDi~~~N~~~~~-~~~~~~~~~i~~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l 139 (211)
T 1uw6_A 67 NSSHSPD--QVSVPISSLWVPDLAAYNAISKP-EVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTE----SGATCRI 139 (211)
T ss_dssp CCTTSCS--EEEEEGGGSCCCCEEETTBCSCC-EECSCCEEEEETTSEEEECCEEEEEEECCCTTTTSS----SCEEEEE
T ss_pred ChhhcCC--eEEccHHHccCCCEeeecccccc-ccceeeEEEEeCCceEEEeCCEEEEEECCCCCCCCC----cceEeEE
Confidence 9999999 78999999999999999999988 55555789999999999999999999999 9999 9999999
Q ss_pred eeecccccCceEEEEEccCCCCCCceeeccccccccc-cceeEEeeeeeEEeeeecccCCCCCCeEEEEEEEEeecccee
Q psy7429 191 KFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYL-SVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYT 269 (555)
Q Consensus 191 ~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~-~~eW~l~~~~~~~~~~~~~~~~~~ys~l~~~l~l~R~~~~y~ 269 (555)
+|+||+|++.++++.+..+ .++++++.. ++||++.+..+.+....|.||+++|++++++|+|||+++||+
T Consensus 140 ~f~S~~y~~~~i~l~~~~~---------~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~yyi 210 (211)
T 1uw6_A 140 KIGSWTHHSREISVDPTTE---------NSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRSEI 210 (211)
T ss_dssp EEEESSCCTTTEEEEECCC---------SSCTTTTSCTTSSEEEEEEEEEEEEEECTTCSSEEEEEEEEEEEEECCCC--
T ss_pred EEEcccccCceEEEEeccc---------ccchhhhcccCCCEEEEeeEEEEEEEEeCCCCCCcceEEEEEEEEEccceeE
Confidence 9999999999999998542 456778888 999999999999989999999999999999999999999997
Q ss_pred e
Q psy7429 270 V 270 (555)
Q Consensus 270 ~ 270 (555)
+
T Consensus 211 l 211 (211)
T 1uw6_A 211 L 211 (211)
T ss_dssp -
T ss_pred C
Confidence 4
No 19
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=100.00 E-value=1.9e-42 Score=332.25 Aligned_cols=193 Identities=19% Similarity=0.265 Sum_probs=163.2
Q ss_pred CCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCCCCCCCCCCCeeEeeeC
Q psy7429 48 RLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVP 127 (555)
Q Consensus 48 ~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL~Wnp~e~~~i~~i~v~ 127 (555)
+++||+ +.++|+.|++++.+.+|.+|||++|.++ +++|++|.|+|+||+|||++ +|++.+.++
T Consensus 5 ~~~RP~-~~~~pv~V~~~l~l~~i~~vdE~~~~~t---------------~~~~l~~~W~D~rL~w~~~~-~~i~~~~~~ 67 (201)
T 3igq_A 5 VSPPPP-IADEPLTVNTGIYLIECYSLDDKAETFK---------------VNAFLSLSWKDRRLAFDPVR-SGVRVKTYE 67 (201)
T ss_dssp CSCCCC-BTTBCEEEEEEEEEEEEECCCTTSSEEE---------------EEEEEEEEEECGGGCCCHHH-HTCSCEECC
T ss_pred cccCCC-CCCCCEEEEEEEEeeecccCcccCCEEE---------------EEEEEeeEEECCccCCCCcC-CCEeEeccc
Confidence 689998 7789999999999999999999999999 99999999999999999998 679999999
Q ss_pred CCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeEEeccccccCCCcccccceeeeecccccCceEEEEEc
Q psy7429 128 SEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHI 207 (555)
Q Consensus 128 ~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~ 207 (555)
.++||+||++++|+++.. ......++|++||+|.|.+|+++++.|+||+++||||+|+|.|+|+||+|++.+++|.+.
T Consensus 68 ~~~IW~PDi~l~N~~~~~--~~~~~~v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~ 145 (201)
T 3igq_A 68 PEAIWIPEIRFVNVENAR--DADVVDISVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVD 145 (201)
T ss_dssp GGGSCCCCEEESSBSSSC--EEEEEEEEECTTCEEEEEEEEEEEEECCCC------CEEEEEEEEEECCCSSCCEEEEEC
T ss_pred ccCcCccCEEEEcccccc--cccceEEEEeCCCcEEEecceeEEEecCcccccCCCCccEeeEEEeccCCCceEEEEEec
Confidence 999999999999997654 344578999999999999999999999999999999999999999999999999999986
Q ss_pred cCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCCCCCeEEEEEEEEeeccce
Q psy7429 208 LQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFY 268 (555)
Q Consensus 208 ~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~~ys~l~~~l~l~R~~~~y 268 (555)
.+ .++++++..++||++.+.++.+....|.||+++|++++|+|.|||+.+.+
T Consensus 146 ~~---------~~~~~~~~~~~ew~l~~~~~~~~~~~y~cc~~~y~~i~f~i~irR~~~~~ 197 (201)
T 3igq_A 146 LE---------KVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQGGHH 197 (201)
T ss_dssp GG---------GCEESCSEEETTEEEEEEEEEEEC--------CCCEEEEEEEEEEC----
T ss_pred CC---------ccccccCcccCCeEEEeeEEEEEEEEeCCCCCccCeEEEEEEEEECCCCC
Confidence 42 45678889999999999999999999999999999999999999998754
No 20
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=100.00 E-value=4.4e-41 Score=323.97 Aligned_cols=197 Identities=25% Similarity=0.524 Sum_probs=183.8
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCC-CCC
Q psy7429 36 KRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKL-KWS 114 (555)
Q Consensus 36 ~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL-~Wn 114 (555)
++|+++|+ ||+.+||+. .++|+.|++++.+.+|.++||++|.++ +++|++|.|+|+|| +||
T Consensus 4 ~~ll~~l~--~d~~~RP~~-~~~p~~V~~~~~l~~i~~v~e~~~~~~---------------~~~~~~~~W~D~rL~~w~ 65 (203)
T 2bj0_A 4 WTLLNQIT--GESDVIPLS-NNTPLNVSLNFKLMNIVEADTEKDQVE---------------VVLWTQASWKVPYYSSLL 65 (203)
T ss_dssp HHHHHHHH--HTTTSCCCC-SSCCEEEEEEEEEEEEEEEETTTTEEE---------------EEEEEEEEEECGGGGGGT
T ss_pred HHHHHHHh--cCCccCCCC-CCCCEEEEEEEEEEeEeeecCCCCEEE---------------EEEEEEeEEECcchhccC
Confidence 58889998 499999998 789999999999999999999999999 99999999999999 999
Q ss_pred CCCCCCeeEeeeCCCCeecCceeeccc-cCCCceeeeeeceEEEeccEEEEeCCceeEEeccc-cccCCCcccccceeee
Q psy7429 115 PEEYGGVDTLHVPSEHIWLPDIVLYNN-ADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEI-DVEYFPFDVQTCVMKF 192 (555)
Q Consensus 115 p~e~~~i~~i~v~~~~IW~Pdi~~~N~-~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~~-dl~~FPfD~Q~C~l~f 192 (555)
|++ |++.+.++.++||+||++++|+ +++.++.. ..++|++||+|.|.+|+++++.|+| |+++ ||+|+|.|+|
T Consensus 66 ~~~--~i~~~~~~~~~iW~PDi~~~N~~~~~~~~~~--~~v~i~~~G~V~~~~~~~~~~~C~m~dl~~--fD~Q~C~l~f 139 (203)
T 2bj0_A 66 SSS--SLDQVSLPVSKMWTPDLSFYNAIAAPELLSA--DRVVVSKDGSVIYVPSQRVRFTCDLINVDT--EPGATCRIKV 139 (203)
T ss_dssp TTS--SCSEEEEEGGGSCCCCEEETTCSSCCEECSC--CEEEEETTSEEEECCEEEEEEECCCTTTTS--SSCEEEEEEE
T ss_pred ccC--CceEEEEchhhccCCCccccccccccccccc--eEEEEeCCcEEEEecceEEEEEccccccCc--cccceeeEEE
Confidence 998 8999999999999999999999 98887655 7899999999999999999999999 9998 9999999999
Q ss_pred ecccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCCCCCeEEEEEEEEee
Q psy7429 193 GSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264 (555)
Q Consensus 193 ~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~~ys~l~~~l~l~R~ 264 (555)
+||+|++.++++.+..+. ++++.++..++||++.+.+..+....|.||+++|++++++|+|||+
T Consensus 140 ~S~~y~~~~v~l~~~~~~--------~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~ 203 (203)
T 2bj0_A 140 GSWTHDNKQFALITGEEG--------VVNIAEYFDSPKFDLLSATQSLNRKKYSCCENMYDDIEITFAFRKK 203 (203)
T ss_dssp EESSCCTTTEEEEECTTT--------TSCTTTTCCCSSEEEEEEEEEEEEEECTTCSSEEEEEEEEEEEEEC
T ss_pred EcccccCcEEEEEecCCC--------ccchhcceecCCEEEEEeEEEEEEEecCCCCCCeeEEEEEEEEEEC
Confidence 999999999999985431 2567788999999999999999999999999999999999999996
No 21
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=99.90 E-value=2.1e-25 Score=204.90 Aligned_cols=119 Identities=59% Similarity=1.019 Sum_probs=97.5
Q ss_pred eecccCCCCCCeEEEEEEEEeeccceeeeeccchhhhhhheeeEEeccCCCCCeeeehhHHHHHHHHHHHHHHhhCCCCc
Q psy7429 243 KFYSCCEEPYPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTS 322 (555)
Q Consensus 243 ~~~~~~~~~ys~l~~~l~l~R~~~~y~~~liiP~~li~~ls~~sF~lp~~s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s 322 (555)
...++|+++|+++++++++||+++||.+++++||+++++++|++||+|++++||++++++++|++++++..+++.+|++|
T Consensus 6 ~~~~~~~~~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~dsgeRvslgit~LLs~tvfl~~v~~~lP~tS 85 (164)
T 2ksr_A 6 HHSTSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISVLLALTVFLLLISKIVPPTS 85 (164)
T ss_dssp -------------------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCSHHHHHHHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred CCCCCCCCCcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCCCCeEEEeeehHHHHHHHHHHHHHHCCCCc
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhheeeeeecCCCCCC
Q psy7429 323 LTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHV 361 (555)
Q Consensus 323 ~~~P~i~~~~~~~~~l~~lsll~tv~v~~l~~r~~~~~~ 361 (555)
.++|++|+|+.+||+++++|+++++++.|+++|++..++
T Consensus 86 ~~vPlI~~y~~~~m~~v~~sll~tv~Vl~~~~r~~~~~~ 124 (164)
T 2ksr_A 86 LDVPLVGKYLMFTMVLVTFSIVTSVCVLNVHHRSPTTHT 124 (164)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTSSCCCCS
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCC
Confidence 899999999999999999999999999999999887664
No 22
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=99.89 E-value=8.3e-26 Score=223.24 Aligned_cols=122 Identities=52% Similarity=0.890 Sum_probs=90.4
Q ss_pred ccceeeeeccchhhhhhheeeEEeccCCCCCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHHHHH
Q psy7429 265 TLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVV 344 (555)
Q Consensus 265 ~~~y~~~liiP~~li~~ls~~sF~lp~~s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsll 344 (555)
+.||++++++||++++++++++||+|++++||+++++++||++++|+..+++.+|++|.++|+||+|+.+||+++++|++
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~gekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s~~ 80 (260)
T 1oed_C 1 PLFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIV 80 (260)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred HHhheeeeeecCCCCCCCCHHHHHHHHhhccceeeecCCCCC
Q psy7429 345 VTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAKD 386 (555)
Q Consensus 345 ~tv~v~~l~~r~~~~~~~p~w~r~~f~~~l~~~l~~~~p~~~ 386 (555)
++++++|+|+|++..+++|+|+|++|++++|++|+|++|.+.
T Consensus 81 ~tv~vl~~~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~p~~~ 122 (260)
T 1oed_C 81 NCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADES 122 (260)
T ss_dssp HHHHHHHHHHHC------------------------------
T ss_pred HHHheeeeeccCCCCCCccHHHHHHHHHhhhHHhEecCCccc
Confidence 999999999999999999999999999999999999999764
No 23
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=99.89 E-value=5.8e-26 Score=223.11 Aligned_cols=121 Identities=57% Similarity=1.021 Sum_probs=90.4
Q ss_pred ccceeeeeccchhhhhhheeeEEeccCCCCCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHHHHH
Q psy7429 265 TLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVV 344 (555)
Q Consensus 265 ~~~y~~~liiP~~li~~ls~~sF~lp~~s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsll 344 (555)
+.||++++++||+++++++|++||+|++++||++++++++|++++|+..+++.+|++|.++|+||+|+.+||+++++|++
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~dsgerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl~ 80 (250)
T 1oed_B 1 PLFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSVI 80 (250)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHheeCCCCCCeEEehhhHHHHHHHHHHHHHHHCCCCcccCCcHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred HHhheeeeeecCCCCCCCCHHHHHHHHhhccceeeecCCCC
Q psy7429 345 VTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAK 385 (555)
Q Consensus 345 ~tv~v~~l~~r~~~~~~~p~w~r~~f~~~l~~~l~~~~p~~ 385 (555)
++++++|+|+|++..|++|+|+|++|++++|++|+|++|.+
T Consensus 81 ~tv~Vln~~~r~~~~~~mp~wvr~~~l~~l~~~l~m~~p~~ 121 (250)
T 1oed_B 81 LSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVT 121 (250)
T ss_dssp HHHHHHHHHHTC-----------------------------
T ss_pred HHhheeeeeccCCCCCCcchHHHHHHHHhhhHHhEecCCCc
Confidence 99999999999999999999999999999999999999975
No 24
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=99.89 E-value=1e-25 Score=218.29 Aligned_cols=121 Identities=56% Similarity=1.048 Sum_probs=90.4
Q ss_pred ccceeeeeccchhhhhhheeeEEeccCCCCCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHHHHH
Q psy7429 265 TLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVV 344 (555)
Q Consensus 265 ~~~y~~~liiP~~li~~ls~~sF~lp~~s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsll 344 (555)
+.||++++++||+++++++|++||+|++++||++++++++|++++|+..+++.+|++|.++|+||+|+.+||+++++|++
T Consensus 1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~sgerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl~ 80 (227)
T 1oed_A 1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSII 80 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred CeEEEehHHHHHHHHHHHHHHHheeCCCCCCeEeehHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred HHhheeeeeecCCCCCCCCHHHHHHHHhhccceeeec---CCCC
Q psy7429 345 VTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQ---RPAK 385 (555)
Q Consensus 345 ~tv~v~~l~~r~~~~~~~p~w~r~~f~~~l~~~l~~~---~p~~ 385 (555)
++++++|+|+|++..+++|+|+|++|++++|++|||+ +|.+
T Consensus 81 ~tv~vln~~~r~~~~~~mp~wvr~~~l~~l~~~l~m~~~~rp~~ 124 (227)
T 1oed_A 81 ITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKRASK 124 (227)
T ss_dssp HHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHhhhccCCCCCCcchHHHHHHHHhccHhheeccccCCcc
Confidence 9999999999999999999999999999999999996 6643
No 25
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=99.89 E-value=1.6e-25 Score=221.22 Aligned_cols=122 Identities=47% Similarity=0.854 Sum_probs=90.2
Q ss_pred ccceeeeeccchhhhhhheeeEEeccCC-CCCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHHHH
Q psy7429 265 TLFYTVNLIIPCVGISFLSVLVFYLPSD-SGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSV 343 (555)
Q Consensus 265 ~~~y~~~liiP~~li~~ls~~sF~lp~~-s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsl 343 (555)
+.||++++++||+++++++|++||+|++ ++||+++++|++|++++|+..+++.+|++|.++|+||+|+.+||+++++|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~sl 80 (260)
T 1oed_E 1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIV 80 (260)
T ss_dssp CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999 799999999999999999999999999999899999999999999999999
Q ss_pred HHHhheeeeeecCCCCCCCCHHHHHHHHhhccceeeec-CCCCC
Q psy7429 344 VVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQ-RPAKD 386 (555)
Q Consensus 344 l~tv~v~~l~~r~~~~~~~p~w~r~~f~~~l~~~l~~~-~p~~~ 386 (555)
+++++++|+|+|++..+++|+|+|++|++++|++|+|+ +|.+.
T Consensus 81 ~~tv~vln~~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~rp~~~ 124 (260)
T 1oed_E 81 MNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQLEPSEE 124 (260)
T ss_dssp HHHHHHHHHHHHC-------------------------------
T ss_pred HHHhheeeeeccCCCCCCcchHHHHHHHHhhhHHhEeccCCccc
Confidence 99999999999999999999999999999999999999 98654
No 26
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=99.89 E-value=9.9e-25 Score=195.14 Aligned_cols=118 Identities=58% Similarity=0.938 Sum_probs=111.4
Q ss_pred EEEeeccceeeeeccchhhhhhheeeEEeccCCCCCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHH
Q psy7429 260 TLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILV 339 (555)
Q Consensus 260 ~l~R~~~~y~~~liiP~~li~~ls~~sF~lp~~s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~ 339 (555)
++||+++||.+++++||+++++++|++||+|++++||++++++++|++++++..+++.+|++|+++|++|+|+.+||+++
T Consensus 2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s~eRv~lgit~lLs~tv~l~~~~~~lP~tS~~vpli~~y~~~~~~~v 81 (137)
T 2lly_A 2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIFV 81 (137)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHCSCCSSSCCSTHHHHHHHHHHH
T ss_pred ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCCCCeEEEEeeeHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHhheeeeeecCCCCCCC-CHHHHHHHHhhccce
Q psy7429 340 TLSVVVTIAVLNVNFRSPVTHVM-KPWVHKVFIEVLPKI 377 (555)
Q Consensus 340 ~lsll~tv~v~~l~~r~~~~~~~-p~w~r~~f~~~l~~~ 377 (555)
++++++++++.|+++|++..|++ +++++++|++..+.+
T Consensus 82 ~~sl~~tv~V~~~~~r~~~~~~mp~~~~dr~~lwif~~~ 120 (137)
T 2lly_A 82 TLSIVITVFVLNVHHRSPETHTGGGGGIDRIFLWMFIIV 120 (137)
T ss_dssp HHHHHHHHHHHHCCSSCSSCCSSCSSSHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhHHhcCCccCccchHHHHHHHHHHHHHH
Confidence 99999999999999999999988 589999999876554
No 27
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=99.87 E-value=1.5e-25 Score=200.45 Aligned_cols=116 Identities=41% Similarity=0.566 Sum_probs=109.0
Q ss_pred eeeecccCCCCC--------CeEEEEEEEEeeccceeeeeccchhhhhhheeeEEeccCCCCCeeeehhHHHHHHHHHHH
Q psy7429 241 NEKFYSCCEEPY--------PDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFL 312 (555)
Q Consensus 241 ~~~~~~~~~~~y--------s~l~~~l~l~R~~~~y~~~liiP~~li~~ls~~sF~lp~~s~~Ri~l~it~LLs~~~~~~ 312 (555)
..+.|+||+++| +++.+++.+||+++||.+++++||+++++++|++||+|++++||++++++++|++++++.
T Consensus 17 ~~~~y~cC~~~y~~~~~g~y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~dsgeRvslgit~lLs~tvfl~ 96 (140)
T 2lkg_A 17 KCVFDKICKIGTESVEAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDSGEKMTESKSVLKSLTEKLK 96 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCccccCCCcEEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCCCCEEEEeeehHHHHHHHHH
Confidence 445667777666 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCccccchhHHHHHHHHHHHHHHHHHHhheeeeeecC
Q psy7429 313 LLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRS 356 (555)
Q Consensus 313 ~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsll~tv~v~~l~~r~ 356 (555)
.+++.+|++|.++|++|+|+.+||+++++|++++++++|+++|+
T Consensus 97 ~v~~~lP~tS~~vPlI~~y~~~~~~~v~~sll~tv~Vln~~~r~ 140 (140)
T 2lkg_A 97 KIVELIPSTSSAVPLIGKYMLFTKEFVESSIKITEEVINTHHRS 140 (140)
T ss_dssp GGGGTCTTTGGGHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCccccccHHHHHHHHHHHHHHHHHHHHHhheeeeccC
Confidence 99999999998999999999999999999999999999998864
No 28
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=99.63 E-value=2.5e-16 Score=150.80 Aligned_cols=73 Identities=25% Similarity=0.468 Sum_probs=69.5
Q ss_pred cccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEe
Q psy7429 477 FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLY 554 (555)
Q Consensus 477 ~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~ 554 (555)
..|||.| ++|++|.+ ++.|.||++|||++|+ +++|++|.|.|++|+||| +|+|++.+++|.++||.|||++|
T Consensus 19 ~~rPv~~-~~pv~V~~----~l~l~~i~~vde~~q~~~~~~wl~~~W~D~rL~W~~-~~~~i~~i~v~~~~IW~PDi~l~ 92 (205)
T 4aoe_A 19 NNIPIVD-EQPVKVSF----KYSLQDIYTADVGTDQVELGLWLVISWKDRSLSWSN-ECTTFNELTLPSKYIWLPHIEVY 92 (205)
T ss_dssp SSCCCCS-SCCEEEEE----EEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSC-CCSCCCEEEEEGGGSCCCCCEET
T ss_pred CCCCCCC-CccEEEEE----EEEEEEeeeEcccCCEEEEEEEEEEEEECCccccCC-cCCCccEEEeCHHHhccccEEEe
Confidence 4699998 78999999 9999999999999987 999999999999999997 79999999999999999999999
Q ss_pred C
Q psy7429 555 N 555 (555)
Q Consensus 555 n 555 (555)
|
T Consensus 93 N 93 (205)
T 4aoe_A 93 N 93 (205)
T ss_dssp T
T ss_pred c
Confidence 7
No 29
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=99.62 E-value=3.8e-16 Score=149.70 Aligned_cols=73 Identities=21% Similarity=0.408 Sum_probs=69.3
Q ss_pred cccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEe
Q psy7429 477 FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLY 554 (555)
Q Consensus 477 ~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~ 554 (555)
..||+.| ++|++|.+ ++.|.||++|||++|+ +++|++|.|.|++|+|+| +|+||+.++++.++||.|||++|
T Consensus 19 ~~rPv~~-~~pv~V~~----~l~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~W~~-~~~~i~~i~v~~~~IW~PDi~l~ 92 (205)
T 4aod_A 19 LNIPIED-DQPVKVSF----EYSLQKIFRADVENDEVDIGLWTTLVWKDRCLNWFN-EFTSFKELTVPIAEIWTPDIFIF 92 (205)
T ss_dssp SSCCCCS-SCCEEEEE----EEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSC-CCSCCCEEEEEGGGSCCCCEEET
T ss_pred cCCCCCC-CccEEEEE----EEEeeeeeeecccCCEEEEEEEEEEEEECCceeeCC-cCCCccEeeccHHhcCcCCEEEE
Confidence 5699988 78999999 9999999999999987 999999999999999997 79999999999999999999999
Q ss_pred C
Q psy7429 555 N 555 (555)
Q Consensus 555 n 555 (555)
|
T Consensus 93 N 93 (205)
T 4aod_A 93 D 93 (205)
T ss_dssp T
T ss_pred c
Confidence 7
No 30
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=99.57 E-value=2.2e-15 Score=144.49 Aligned_cols=74 Identities=26% Similarity=0.473 Sum_probs=70.9
Q ss_pred cccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEe
Q psy7429 477 FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLY 554 (555)
Q Consensus 477 ~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~ 554 (555)
..||+.+. +|++|.+ ++.+.||++|||++|. +++|++|.|.|++|+|+|++|+|++.++++.+.||+||++++
T Consensus 17 ~~RP~~~~-~~v~V~~----~~~l~~i~~v~e~~~~~t~~~~~~~~W~D~rL~w~~~~~~~i~~i~~~~~~iW~PDi~~~ 91 (204)
T 3sq6_A 17 DVIPTQRD-RPVTVYF----SLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAY 91 (204)
T ss_dssp TSCCCCSS-CCEEEEE----EEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTSSSCCEEEEEGGGSCCCCEEET
T ss_pred CCCCCCCC-CcEEEEE----EEEhhheeehhccccEEEEEEeeeeEEECCCcccChHHcCCccEEEcCHHHCcCCCEEeE
Confidence 45999999 9999999 9999999999999987 999999999999999999999999999999999999999998
Q ss_pred C
Q psy7429 555 N 555 (555)
Q Consensus 555 n 555 (555)
|
T Consensus 92 N 92 (204)
T 3sq6_A 92 N 92 (204)
T ss_dssp T
T ss_pred c
Confidence 7
No 31
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=99.57 E-value=2.5e-15 Score=146.58 Aligned_cols=72 Identities=24% Similarity=0.399 Sum_probs=70.1
Q ss_pred ccccCCCCeEEEEeeeccceeeeeeccccc----cee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEE
Q psy7429 480 QMILMPRPLTWRLPYELPSKLARLASIHFC----DLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVL 553 (555)
Q Consensus 480 Pv~~~~~~~~v~~~~~~~~~l~~i~~v~e~----~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l 553 (555)
|+.+.++|++|.+ +++++||++|||+ +|+ +++|++|.|.|++|+|+|++|+|++.++++.++||+||+++
T Consensus 26 P~~~~~~pv~V~~----~l~l~~i~~v~E~~~~~~~~~t~~~~l~~~W~D~rL~wnp~~~~~i~~i~l~~~~IW~PDi~l 101 (230)
T 4afh_A 26 PFLDDIGKVDVKF----GLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKL 101 (230)
T ss_dssp SCSSBCCCEEEEE----EEEEEEEEEEEECTTSSEEEEEEEEEEEEEEECGGGCCCCCTTSCCSEEEECGGGSCCCCEEE
T ss_pred CCCCCCCCEEEEE----EEEHhHhhhhhhcccccCcEEEEEEEEeeEEECccccCCcccCCCeeEEEeccCCEECCcEEE
Confidence 9999999999999 9999999999999 987 99999999999999999999999999999999999999999
Q ss_pred eC
Q psy7429 554 YN 555 (555)
Q Consensus 554 ~n 555 (555)
||
T Consensus 102 ~N 103 (230)
T 4afh_A 102 FN 103 (230)
T ss_dssp TT
T ss_pred Ee
Confidence 87
No 32
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=99.55 E-value=3.8e-15 Score=143.81 Aligned_cols=75 Identities=36% Similarity=0.754 Sum_probs=72.1
Q ss_pred cccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEe
Q psy7429 477 FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLY 554 (555)
Q Consensus 477 ~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~ 554 (555)
..||+.+.++|++|.+ ++.+.||++|+|++|. +++|++|.|.|++|+|+|++|+|++.++++.++||+||+++|
T Consensus 19 ~~RP~~~~~~pv~V~~----~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~l~~~~~~iW~PDi~~~ 94 (212)
T 2qc1_B 19 VVRPVEDHREIVQVTV----GLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSEKIWRPDVVLY 94 (212)
T ss_dssp SSCSCSSTTSCEEEEE----EEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCGGGGTTCCEEEECGGGSCCCCEEEC
T ss_pred CCCCccCCCCcEEEEE----EEEEecccccccCCcEEEEEEEEeeEEECCCcccChhhcCCeeEEEcchhhccCCceecc
Confidence 4599999999999999 9999999999999987 999999999999999999999999999999999999999999
Q ss_pred C
Q psy7429 555 N 555 (555)
Q Consensus 555 n 555 (555)
|
T Consensus 95 N 95 (212)
T 2qc1_B 95 N 95 (212)
T ss_dssp C
T ss_pred c
Confidence 7
No 33
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=99.50 E-value=2.1e-14 Score=138.49 Aligned_cols=72 Identities=19% Similarity=0.359 Sum_probs=68.7
Q ss_pred cccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEe
Q psy7429 477 FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLY 554 (555)
Q Consensus 477 ~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~ 554 (555)
..||+ +.++|++|.+ ++.+.+|++|+|++|. +++|++|.|.|++|+|+|++|+| .++++.++||+||++++
T Consensus 18 ~~RP~-~~~~~~~V~~----~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~--~l~~~~~~iW~PDi~~~ 90 (211)
T 1uw6_A 18 DVIPT-QRDRPVAVSV----SLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPD--QVSVPISSLWVPDLAAY 90 (211)
T ss_dssp TSCCC-CTTCCEEEEE----EEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCCTTSCS--EEEEEGGGSCCCCEEET
T ss_pred cCCCC-CCCCcEEEEE----EEEHHHhhchhhhCcEEEEEEEEEeEeECcccccChhhcCC--eEEccHHHccCCCEeee
Confidence 46999 9999999999 9999999999999987 99999999999999999999999 89999999999999999
Q ss_pred C
Q psy7429 555 N 555 (555)
Q Consensus 555 n 555 (555)
|
T Consensus 91 N 91 (211)
T 1uw6_A 91 N 91 (211)
T ss_dssp T
T ss_pred c
Confidence 7
No 34
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=99.50 E-value=1.2e-14 Score=141.73 Aligned_cols=72 Identities=26% Similarity=0.434 Sum_probs=69.7
Q ss_pred ccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEeC
Q psy7429 480 QMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555 (555)
Q Consensus 480 Pv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~n 555 (555)
|+.+.++|++|.+ ++.+.+|++|+|++|. +++|++|.|.|++|+|+|++|+|++.++++.++||+||+++||
T Consensus 30 P~~~~~~pv~V~~----~~~l~~i~~v~e~~~~~~~~~~l~~~W~D~rL~w~~~~y~~i~~l~~~~~~IW~PDi~l~N 103 (228)
T 2wn9_A 30 PGPTKDDPLTVTL----GFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYS 103 (228)
T ss_dssp CCCBTTBCEEEEE----EEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECCGGGGTTCCEEEEEGGGSCCCCEEESS
T ss_pred cccCCCCCEEEEE----EEEhhHhhhhhccccEEEEEEEEEEEEECCCccCCchhcCCeeEEEecHHHccCCceeccc
Confidence 8889999999999 9999999999999987 9999999999999999999999999999999999999999997
No 35
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=99.48 E-value=1.4e-14 Score=138.46 Aligned_cols=72 Identities=24% Similarity=0.335 Sum_probs=68.7
Q ss_pred ccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEeC
Q psy7429 478 DNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555 (555)
Q Consensus 478 ~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~n 555 (555)
.||+ +.++|++|.+ ++.+.||++|||++|. +++|++|.|.|++|+|+|++ +|++.++++.+.||.||+++||
T Consensus 7 ~RP~-~~~~pv~V~~----~l~l~~i~~vdE~~~~~t~~~~l~~~W~D~rL~w~~~~-~~i~~~~~~~~~IW~PDi~l~N 80 (201)
T 3igq_A 7 PPPP-IADEPLTVNT----GIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVR-SGVRVKTYEPEAIWIPEIRFVN 80 (201)
T ss_dssp CCCC-BTTBCEEEEE----EEEEEEEECCCTTSSEEEEEEEEEEEEECGGGCCCHHH-HTCSCEECCGGGSCCCCEEESS
T ss_pred cCCC-CCCCCEEEEE----EEEeeecccCcccCCEEEEEEEEeeEEECCccCCCCcC-CCEeEecccccCcCccCEEEEc
Confidence 4999 8999999999 9999999999999987 99999999999999999999 6899999999999999999987
No 36
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=99.46 E-value=3.5e-14 Score=153.31 Aligned_cols=75 Identities=32% Similarity=0.590 Sum_probs=72.3
Q ss_pred cccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEe
Q psy7429 477 FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLY 554 (555)
Q Consensus 477 ~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~ 554 (555)
..||+.|.++|++|.+ ++.+.||++|||++|+ +++|++|.|+|++|+|||++|+|++.++++.++||.||+++|
T Consensus 17 ~~RP~~~~~~pv~V~v----~l~l~~I~~VdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~~~~IW~PDi~l~ 92 (488)
T 4aq5_E 17 RIKPAKTLDHVIDVTL----KLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLE 92 (488)
T ss_dssp SSCCCSSTTSCCCEEE----EEEEEEECCCBTTTTBEEEEEEEEEEEECCTTCCCTTTTTTCSCCCCCTTSSCCCCEECS
T ss_pred CCCCCCCCCCcEEEEE----EEEEeeeeccccccceeeeeeeeeeEEECcccCcCchhcCCceEEecCccCEECCceehh
Confidence 4599999999999999 9999999999999987 899999999999999999999999999999999999999998
Q ss_pred C
Q psy7429 555 N 555 (555)
Q Consensus 555 n 555 (555)
|
T Consensus 93 N 93 (488)
T 4aq5_E 93 N 93 (488)
T ss_dssp S
T ss_pred c
Confidence 7
No 37
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=99.45 E-value=2.7e-14 Score=153.04 Aligned_cols=75 Identities=29% Similarity=0.700 Sum_probs=72.2
Q ss_pred cccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEe
Q psy7429 477 FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLY 554 (555)
Q Consensus 477 ~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~ 554 (555)
..||+.|.++|++|++ ++.+.||++|||++|. +++|++|.|.|++|+|||++|+|++.+++|.++||.||+++|
T Consensus 42 ~~RP~~~~~~pv~V~v----~l~l~~i~~vdE~~q~~t~~~~l~~~W~D~rL~Wnp~~y~gi~~l~vp~~~IW~PDi~l~ 117 (461)
T 4aq5_A 42 VIRPVEHHTHFVDITV----GLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLY 117 (461)
T ss_dssp SCCCCCSSSSCEEEEE----EEEEEEEEEEETTTTEEEEEEEEEEEECCTTCBCCTTTHHHHSSEEEEGGGSCCCCEEES
T ss_pred CCCCCCCCCCcEEEEE----EEEEeeehhhhccceEEEEEEEEeeeeECcccCCChhhcCCccEEEecCCCEECCceeee
Confidence 4599999999999999 9999999999999987 999999999999999999999999999999999999999999
Q ss_pred C
Q psy7429 555 N 555 (555)
Q Consensus 555 n 555 (555)
|
T Consensus 118 N 118 (461)
T 4aq5_A 118 N 118 (461)
T ss_dssp S
T ss_pred c
Confidence 7
No 38
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=99.45 E-value=5.2e-14 Score=153.06 Aligned_cols=75 Identities=29% Similarity=0.483 Sum_probs=72.3
Q ss_pred cccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEe
Q psy7429 477 FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLY 554 (555)
Q Consensus 477 ~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~ 554 (555)
..||+.|.++|++|.+ ++.++||++|||++|+ +++|++|.|+|++|+|||++|+|++.++++.++||.||+++|
T Consensus 41 ~~RPv~~~~~pv~V~v----~l~l~~I~~VdE~~q~~t~~vwl~q~W~D~RL~Wnp~~y~gi~~l~vp~~~IW~PDi~l~ 116 (522)
T 4aq5_C 41 HVRPVKHNNEVVNIAL----SLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQ 116 (522)
T ss_dssp SSCCSSSSSSCCCEEE----EEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCCCCCCTCSCEEECGGGSCCCCEEET
T ss_pred CCCCCCCCCCcEEEEE----EEEeeecccccccccEEEEEEEEeeeEeCcccCCCchhcCCceEEeeccCCEECCcEecc
Confidence 4599999999999999 9999999999999987 899999999999999999999999999999999999999999
Q ss_pred C
Q psy7429 555 N 555 (555)
Q Consensus 555 n 555 (555)
|
T Consensus 117 N 117 (522)
T 4aq5_C 117 N 117 (522)
T ss_dssp T
T ss_pred c
Confidence 7
No 39
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.45 E-value=7.1e-14 Score=146.03 Aligned_cols=75 Identities=29% Similarity=0.483 Sum_probs=72.1
Q ss_pred cccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEe
Q psy7429 477 FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLY 554 (555)
Q Consensus 477 ~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~ 554 (555)
..||+.|.++|++|.+ ++.+.||++|||++|. +++|++|.|.|++|+|||++|+|++.++++.++||.||++++
T Consensus 20 ~~RP~~~~~~pv~V~~----~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~~IW~PDi~~~ 95 (369)
T 2bg9_C 20 HVRPVKHNNEVVNIAL----SLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQ 95 (369)
T ss_dssp SSCCSSSSSSCCEEEE----EEEEEEEEEEETTTTEEEEEEEEEEEEECTTTCCCCCCCCTCSCEEECGGGSCCCCEEET
T ss_pred CCCCCCCCCCCEEEEE----EEEehhhccccccccceEEEEEEeeeeECCCcccCccccCCeeEEEecHHhccCCcEecc
Confidence 4599999999999999 9999999999999987 999999999999999999999999999999999999999998
Q ss_pred C
Q psy7429 555 N 555 (555)
Q Consensus 555 n 555 (555)
|
T Consensus 96 N 96 (369)
T 2bg9_C 96 N 96 (369)
T ss_dssp T
T ss_pred c
Confidence 7
No 40
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.44 E-value=7.8e-14 Score=145.79 Aligned_cols=75 Identities=31% Similarity=0.577 Sum_probs=72.0
Q ss_pred cccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEe
Q psy7429 477 FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLY 554 (555)
Q Consensus 477 ~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~ 554 (555)
..||+.|.++|++|.+ ++.+.||++|||++|. +++|++|.|.|++|+|||++|+|++.++++.++||.||++++
T Consensus 18 ~~RP~~~~~~pv~V~~----~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~~IW~PDi~~~ 93 (370)
T 2bg9_B 18 KVRPSQTVGDKVTVRV----GLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLM 93 (370)
T ss_dssp TCCSSCSSSSCCEEEE----ECCEEEEEEEETTTTEEEEEEECEEEEECTTSCCCTTTTSSCSEEEEESSSSCCCCEEES
T ss_pred CCCCCCCCCCCEEEEE----EEEehhhhhhhccccceEEEEEEeeeeECcccCcCccccCCeeEEEechhhccCCCcccc
Confidence 4599999999999999 9999999999999987 999999999999999999999999999999999999999999
Q ss_pred C
Q psy7429 555 N 555 (555)
Q Consensus 555 n 555 (555)
|
T Consensus 94 N 94 (370)
T 2bg9_B 94 N 94 (370)
T ss_dssp S
T ss_pred c
Confidence 7
No 41
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=99.44 E-value=1.1e-13 Score=143.51 Aligned_cols=75 Identities=17% Similarity=0.313 Sum_probs=71.0
Q ss_pred cccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEee-CCCCcccCCEEE
Q psy7429 477 FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHV-PSEHIWLPDIVL 553 (555)
Q Consensus 477 ~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v-~~~~iW~Pdi~l 553 (555)
..||+.+.++|++|.+ ++.+.||++|||++|. +++|++|.|.|++|+|||++|+|++.+.+ |.++||.||+++
T Consensus 17 ~~RP~~~~~~~v~V~~----~l~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~p~~~~~~~~l~~~~~~~IW~PDi~l 92 (347)
T 3rhw_A 17 RVRPPTDNGGPVVVSV----NMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFF 92 (347)
T ss_dssp TSCCCCSSSCCEEEEE----EEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCSSTTCSSSCSEEECCTTCCCCCCCEEC
T ss_pred CCCCCCCCCCcEEEEE----EEEEEeeccccccceeEEEEEEEeeEEECcccCCCCccCCCceEEEecchhceecCCEee
Confidence 4599999999999999 9999999999999987 99999999999999999999999999886 889999999999
Q ss_pred eC
Q psy7429 554 YN 555 (555)
Q Consensus 554 ~n 555 (555)
||
T Consensus 93 ~N 94 (347)
T 3rhw_A 93 PN 94 (347)
T ss_dssp TT
T ss_pred ec
Confidence 87
No 42
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=99.43 E-value=5e-14 Score=152.29 Aligned_cols=75 Identities=31% Similarity=0.577 Sum_probs=72.2
Q ss_pred cccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEe
Q psy7429 477 FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLY 554 (555)
Q Consensus 477 ~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~ 554 (555)
..||+.|.++|++|.+ ++.+.||++|||++|+ +++|++|.|+|++|+|||++|+|++.++++.++||.||+++|
T Consensus 42 ~~RP~~~~~~pv~V~v----~l~l~~i~~vdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~~~~IW~PDi~l~ 117 (493)
T 4aq5_B 42 KVRPSQTVGDKVTVRV----GLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLM 117 (493)
T ss_dssp SSCSSCSSSSCCEEEE----ECCEEEEEEEETTTTEEEEEEECEEEEECTTCCCCHHHHSSCSCEEECSCSSCCCCCEES
T ss_pred CCCCCCCCCCcEEEEE----EEEEeeeeeccccceEEEEEEEeecceECcccCCChhhcCCeeEEecccccCccCcEEEe
Confidence 4599999999999999 9999999999999987 899999999999999999999999999999999999999999
Q ss_pred C
Q psy7429 555 N 555 (555)
Q Consensus 555 n 555 (555)
|
T Consensus 118 N 118 (493)
T 4aq5_B 118 N 118 (493)
T ss_dssp S
T ss_pred c
Confidence 7
No 43
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.43 E-value=8.5e-14 Score=145.52 Aligned_cols=75 Identities=32% Similarity=0.590 Sum_probs=72.0
Q ss_pred cccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEe
Q psy7429 477 FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLY 554 (555)
Q Consensus 477 ~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~ 554 (555)
..||+.+.++|++|.+ ++.+.||++|||++|. +++|++|.|.|++|+|||++|+|++.++++.++||.||++++
T Consensus 17 ~~RP~~~~~~pv~V~~----~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~~IW~PDi~~~ 92 (370)
T 2bg9_E 17 RIKPAKTLDHVIDVTL----KLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLE 92 (370)
T ss_dssp SSCCCSSSSSCCCEEE----EEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTTTTCSCBCCCGGGSCCCCEEES
T ss_pred CCCCCCCCCCCEEEEE----EEEehhhhchhhcccceeEeEEEeeEEECCCcCCChhhcCCeeEEeechhccCCCCEeec
Confidence 4599999999999999 9999999999999987 999999999999999999999999999999999999999999
Q ss_pred C
Q psy7429 555 N 555 (555)
Q Consensus 555 n 555 (555)
|
T Consensus 93 N 93 (370)
T 2bg9_E 93 N 93 (370)
T ss_dssp S
T ss_pred c
Confidence 7
No 44
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.41 E-value=7.6e-14 Score=145.89 Aligned_cols=75 Identities=29% Similarity=0.700 Sum_probs=72.0
Q ss_pred cccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEe
Q psy7429 477 FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLY 554 (555)
Q Consensus 477 ~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~ 554 (555)
..||+.|.++|++|.+ ++.+.||++|||++|. +++|++|.|.|++|+|||++|+|++.++++.++||.||++++
T Consensus 18 ~~RP~~~~~~pv~V~~----~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~l~v~~~~IW~PDi~~~ 93 (370)
T 2bg9_A 18 VIRPVEHHTHFVDITV----GLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLY 93 (370)
T ss_dssp TCCCCCSSSSCEEEEE----EEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTTHHHHSSEEEEGGGSCCCCEEET
T ss_pred CCCCCCCCCCCEEEEE----EEEehHhhcchhhccceEEEEEEeeeeECCCccCChhhcCCccEEEechhhccCCcEecc
Confidence 4599999999999999 9999999999999988 999999999999999999999999999999999999999998
Q ss_pred C
Q psy7429 555 N 555 (555)
Q Consensus 555 n 555 (555)
|
T Consensus 94 N 94 (370)
T 2bg9_A 94 N 94 (370)
T ss_dssp T
T ss_pred c
Confidence 7
No 45
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=99.41 E-value=2.1e-13 Score=130.59 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=68.5
Q ss_pred cccccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCcc-ccCCCCCCCceeEeeCCCCcccCCEEE
Q psy7429 477 FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKL-KWSPEEYGGVDTLHVPSEHIWLPDIVL 553 (555)
Q Consensus 477 ~~rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l-~W~p~~~~gi~~i~v~~~~iW~Pdi~l 553 (555)
..||+. .++|++|.+ ++.+.+|++|||++|. +++|++|.|.|++| +|+|++ |++.++++.++||.||+++
T Consensus 15 ~~RP~~-~~~p~~V~~----~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~~w~~~~--~i~~~~~~~~~iW~PDi~~ 87 (203)
T 2bj0_A 15 DVIPLS-NNTPLNVSL----NFKLMNIVEADTEKDQVEVVLWTQASWKVPYYSSLLSSS--SLDQVSLPVSKMWTPDLSF 87 (203)
T ss_dssp TSCCCC-SSCCEEEEE----EEEEEEEEEEETTTTEEEEEEEEEEEEECGGGGGGTTTS--SCSEEEEEGGGSCCCCEEE
T ss_pred ccCCCC-CCCCEEEEE----EEEEEeEeeecCCCCEEEEEEEEEeEEECcchhccCccC--CceEEEEchhhccCCCccc
Confidence 469998 899999999 9999999999999987 99999999999999 999998 8999999999999999999
Q ss_pred eC
Q psy7429 554 YN 555 (555)
Q Consensus 554 ~n 555 (555)
||
T Consensus 88 ~N 89 (203)
T 2bj0_A 88 YN 89 (203)
T ss_dssp TT
T ss_pred cc
Confidence 97
No 46
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=99.40 E-value=2.3e-13 Score=139.52 Aligned_cols=71 Identities=25% Similarity=0.396 Sum_probs=67.9
Q ss_pred cccccCCCCeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeEeeCCCCcccCCEEEeC
Q psy7429 479 NQMILMPRPLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555 (555)
Q Consensus 479 rPv~~~~~~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i~v~~~~iW~Pdi~l~n 555 (555)
||. +.++|++|++ ++.+.||++|||++|. +++|++|.|.|++|+|||++|+ ++.++++.++||+||++++|
T Consensus 12 RP~-~~~~~v~V~~----~~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~~~~~~-i~~~~~~~~~IW~PDi~l~N 84 (321)
T 3tlw_A 12 PPP-IADEPLTVNT----GIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSG-VRVKTYEPEAIWIPEIRFVN 84 (321)
T ss_dssp CCC-SSSCCEEEEE----EEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCSTTTC-CSSEECCGGGSCCCCEEESS
T ss_pred CCC-CCCCCEEEEE----EEEEEeecceeccCcEEEEEEEEeeEEECcccCCCCccCC-eeeecccccCeEcCcEEeec
Confidence 886 7899999999 9999999999999987 9999999999999999999998 99999999999999999987
No 47
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=99.04 E-value=8.8e-11 Score=120.34 Aligned_cols=67 Identities=12% Similarity=0.217 Sum_probs=54.8
Q ss_pred ccccCCC--CeEEEEeeeccceeeeeeccccccee--EeEEEEeEEEeCccccCCCCCCCceeE--------eeCCCCcc
Q psy7429 480 QMILMPR--PLTWRLPYELPSKLARLASIHFCDLL--TPINFLQEWEDYKLKWSPEEYGGVDTL--------HVPSEHIW 547 (555)
Q Consensus 480 Pv~~~~~--~~~v~~~~~~~~~l~~i~~v~e~~q~--~~~~~~~~W~d~~l~W~p~~~~gi~~i--------~v~~~~iW 547 (555)
||.|.++ |++|++ ++.+.||++|||++|. +++|++|.|.|++|+| +|++.+ ++|.++||
T Consensus 2 Pv~n~s~~~pv~V~~----~~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~~-----~~~~~l~l~~~~~~~ip~~~IW 72 (322)
T 3rqw_A 2 PADNAADARPVDVSV----SIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKT-----PGDKPLIVENTQIERWINNGLW 72 (322)
T ss_dssp ---------CEEEEE----EEEEEEEEEEETTTTEEEEEEEEEEEEECSCCCC-----STTSCEEEETHHHHHHHHTTCC
T ss_pred CcCCCCCCCCEEEEE----EEEEEeeccccccCcEEEEEEEEeeEEechhhCC-----CCCCceeecchhhccccccccc
Confidence 8999999 999999 9999999999999987 9999999999999998 467776 55799999
Q ss_pred cCCEEEeC
Q psy7429 548 LPDIVLYN 555 (555)
Q Consensus 548 ~Pdi~l~n 555 (555)
.||++++|
T Consensus 73 ~Pdi~l~N 80 (322)
T 3rqw_A 73 VPALEFIN 80 (322)
T ss_dssp CCCEEETT
T ss_pred CCcEEEEc
Confidence 99999987
No 48
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=98.77 E-value=6.7e-10 Score=87.44 Aligned_cols=63 Identities=22% Similarity=0.203 Sum_probs=56.4
Q ss_pred CCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHHHHHHHHHHHhheeeeeecCC
Q psy7429 294 GEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSP 357 (555)
Q Consensus 294 ~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~l~~lsll~tv~v~~l~~r~~ 357 (555)
++|++||++++|+++.+...+...+|+.| |++.+|+|+++|+++++++++|.+++.++.++++
T Consensus 2 paRv~LGittvLtmtt~~~~~~~~lPkVS-YikAiDvw~~~C~~FVF~aLlEya~V~y~~r~~~ 64 (76)
T 1vry_A 2 PARVGLGITTVLTLTTQSSGSRASLPKVS-YVKAIDIWLAVCLLFVFSALLEYAAVNFVSRKKK 64 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCSHH-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred CceEEechHHHHHHHHHhcCcccCCCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 47999999999999999999999999999 8999999999999999999999999988765443
No 49
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=67.64 E-value=0.16 Score=31.58 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=20.3
Q ss_pred CCeeeehhHHHHHHHHHHHHHHhhCCC
Q psy7429 294 GEKVSLCISILLSLTVFFLLLAEIIPP 320 (555)
Q Consensus 294 ~~Ri~l~it~LLs~~~~~~~l~~~lP~ 320 (555)
++|++|+++.+|+++.+.......+|+
T Consensus 2 paRv~LGittvLt~tt~~~~~~~~lPk 28 (28)
T 1mot_A 2 PARVGLGITTVLTMTTQSSGSRASLPK 28 (28)
T ss_dssp CHHHHHHHHHHHHHCCSSSSSSSSCCC
T ss_pred CceEEEcchhHHHHHHHHhhHhhhCCC
Confidence 579999999999997766555555553
No 50
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=61.61 E-value=12 Score=22.58 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=13.2
Q ss_pred ccccCCCCCCCCCCCCCCC
Q psy7429 454 DDIMFSPTSMCPPTQDGTD 472 (555)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~ 472 (555)
-+.|.-|-++|++|-||..
T Consensus 12 pgvmgfpgppgppgpccgg 30 (31)
T 4gyx_A 12 PGVMGFPGPPGPPGPCCGG 30 (31)
T ss_dssp CCCCCCCCCCCCCCCCC--
T ss_pred CccccCCCCCCCCCCCccC
Confidence 3567777788899988864
Done!