RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7429
(555 letters)
>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand
binding domain. This family is the extracellular ligand
binding domain of these ion channels. This domain forms
a pentameric arrangement in the known structure.
Length = 215
Score = 294 bits (755), Expect = 2e-97
Identities = 114/232 (49%), Positives = 149/232 (64%), Gaps = 18/232 (7%)
Query: 35 AKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQ 94
+RL DDLL NY++ +RPV N SD +TV +GL L+Q+I+V+ KNQ +TTNVW+ Q
Sbjct: 1 EERLLDDLLENYDKRVRPVKNGSDPVTVSVGLYLTQIIDVDEKNQDLTTNVWLRQ----- 55
Query: 95 IMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTI-MTK 153
+W D +L W PE+YGG+ +L +PS+ IW PDIVLYN ADG +++T T
Sbjct: 56 ----------QWTDERLAWDPEDYGGITSLRLPSDKIWKPDIVLYNKADGIHDITTPNTN 105
Query: 154 AILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDS 213
++ DG V+W+PPAIYKS C +D+ YFPFD Q C +KFGSWTY+G VDL+ P
Sbjct: 106 VRVYPDGTVLWSPPAIYKSSCPMDLTYFPFDQQNCSLKFGSWTYNGEEVDLRWKDDTPPI 165
Query: 214 DKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKT 265
IDL D+ + EWDI+ VPA RNE Y C E YPD+ F LRRK
Sbjct: 166 LD--EEIDLSDFTENGEWDIVDVPAKRNEYPYGCYSELYPDVTFYFVLRRKP 215
Score = 68.4 bits (168), Expect = 4e-13
Identities = 22/37 (59%), Positives = 29/37 (78%)
Query: 519 QEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
Q+W D +L W PE+YGG+ +L +PS+ IW PDIVLYN
Sbjct: 55 QQWTDERLAWDPEDYGGITSLRLPSDKIWKPDIVLYN 91
>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein. The
Ligand-gated Ion Channel (LIC) Family of
Neurotransmitter Receptors TC 1.A.9)Members of the LIC
family of ionotropic neurotransmitter receptors are
found only in vertebrate and invertebrate animals. They
exhibit receptor specificity for (1)acetylcholine, (2)
serotonin, (3) glycine, (4) glutamate and (5)
g-aminobutyric acid (GABA). All of these receptor
channels are probably hetero- orhomopentameric. The best
characterized are the nicotinic acetyl-choline receptors
which are pentameric channels of a2bgd subunit
composition. All subunits arehomologous. The three
dimensional structures of the protein complex in both
the open and closed configurations have been solved at
0.9 nm resolution.The channel protein complexes of the
LIC family preferentially transport cations or anions
depending on the channel (e.g., the acetylcholine
receptors are cationselective while glycine receptors
are anion selective) [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 459
Score = 290 bits (744), Expect = 2e-92
Identities = 113/355 (31%), Positives = 169/355 (47%), Gaps = 35/355 (9%)
Query: 20 TFLVFSVIIAQGNDEAK--------RLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQL 71
L S+ AK +L D+LL NY+ +RPV +TV L L +
Sbjct: 8 LLLFASLAAVSLAGNAKSNLKEVERKLLDELLKNYDARVRPV-FGGPPVTVSFNLFLRSI 66
Query: 72 IEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHI 131
++V+ KN TTN+W+ Q EW D +L+W+PEEY GV + P + I
Sbjct: 67 MDVDEKNMDYTTNIWLRQ---------------EWTDERLQWNPEEYPGVTLVRTPDDSI 111
Query: 132 WLPDIVLYNNADGNYEVTIMTKAI--LHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCV 189
W+PDI YN D + MT + +H +G V+++P C +D+ FPFDVQ C
Sbjct: 112 WVPDIFFYNEKDARFHGITMTNVLVRIHPNGSVLYSPRITLTLACPMDLRNFPFDVQNCS 171
Query: 190 MKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCE 249
+KF SW Y + L+ QG + I L E++++ V R
Sbjct: 172 LKFESWGYTTNDIKLEWKEQGAVQVDDSLFISLP------EFELLGVYGTRYC-TSETNT 224
Query: 250 EPYPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSD-SGEKVSLCISILLSLT 308
YP + F+ LRR+ L+Y + L IP + I LS + F+LP+D SG +VSL I+ LL++T
Sbjct: 225 GEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMT 284
Query: 309 VFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMK 363
F + E +P S V + Y M V L+++ T V V+ + P
Sbjct: 285 TFSSGVRESLPAVS-YVKAIDVYFAVCMAFVFLALLETAFVNYVHHKDPAQGKRH 338
Score = 59.3 bits (144), Expect = 2e-09
Identities = 23/46 (50%), Positives = 29/46 (63%)
Query: 510 DLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
D T I QEW D +L+W+PEEY GV + P + IW+PDI YN
Sbjct: 75 DYTTNIWLRQEWTDERLQWNPEEYPGVTLVRTPDDSIWVPDIFFYN 120
>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel
transmembrane region. This family includes the four
transmembrane helices that form the ion channel.
Length = 228
Score = 192 bits (490), Expect = 8e-58
Identities = 72/166 (43%), Positives = 95/166 (57%), Gaps = 1/166 (0%)
Query: 272 LIIPCVGISFLSVLVFYLPSDSG-EKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGK 330
LIIPCV ISFLS LVF+LP+D+G EKV+L I+ LL++TVF LL+ E +P TS VPL+GK
Sbjct: 1 LIIPCVLISFLSWLVFWLPADAGPEKVTLGITTLLTMTVFLLLIRESLPKTSYVVPLIGK 60
Query: 331 YLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAKDNDDD 390
YL+FTM + T SV + VLNV+ RSP TH M WV K+F+ LP++LF++RP +
Sbjct: 61 YLVFTMFVFTASVEYAVVVLNVHHRSPSTHKMPEWVRKLFLRKLPRLLFMKRPPESLSPP 120
Query: 391 LDKPPDGVLTEVFDVPDYVDYGGRYQTDFDIPSLPPSRYDVSNTGS 436
+ V + S S GS
Sbjct: 121 AAPNLRRSSSSSGSVLEPASGKESKGVGGPETSSGLPGGSGSGLGS 166
>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1. Mating in
fungi is controlled by the loci that determine the
mating type of an individual, and only individuals with
differing mating types can mate. Basidiomycete fungi
have evolved a unique mating system, termed tetrapolar
or bifactorial incompatibility, in which mating type is
determined by two unlinked loci; compatibility at both
loci is required for mating to occur. The multi-allelic
tetrapolar mating system is considered to be a novel
innovation that could have only evolved once, and is
thus unique to the mushroom fungi. This domain is
C-terminal to the homeodomain transcription factor
region.
Length = 418
Score = 34.8 bits (80), Expect = 0.12
Identities = 29/137 (21%), Positives = 41/137 (29%), Gaps = 7/137 (5%)
Query: 387 NDDDLDKPPDGVLTEVFDVPDYVDYGGRYQTDFDIPSLPPSRYDVSNTGSTVVPCYGDPL 446
++ P L+ D G R + D LP + +++ V DPL
Sbjct: 158 SEASAAPLPTPSLSPPHTPTDTAPSGKRKRRLSDGFQLPAPKRPQTSSRPQTV---SDPL 214
Query: 447 PISNLEADDIMFSPTSMCPPTQDGT-DVSPTFDNQMILMPRPLTWRLPYELPSKLARLAS 505
P+ D F T P+ T D+ P PL L + P L L
Sbjct: 215 PLHATTDWDTWFQATVSSSPSLLLTGDIPPPVSVFAPDDSTPLDISL-FNFP--LIPLLP 271
Query: 506 IHFCDLLTPINFLQEWE 522
DL P
Sbjct: 272 PEALDLPAPTAVSSSSS 288
>gnl|CDD|215648 pfam00003, 7tm_3, 7 transmembrane sweet-taste receptor of 3 GCPR.
This is a domain of seven transmembrane regions that
forms the C-terminus of some subclass 3
G-coupled-protein receptors. It is often associated with
a downstream cysteine-rich linker domain, NCD3G
pfam07562, which is the human sweet-taste receptor, and
the N-terminal domain, ANF_receptor pfam01094. The seven
TM regions assemble in such a way as to produce a
docking pocket into which such molecules as cyclamate
and lactisole have been found to bind and consequently
confer the taste of sweetness.
Length = 238
Score = 32.6 bits (75), Expect = 0.39
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 271 NLIIPCVGISFLSVLVFYL-PSDSGEKV---------SLCISILLSLTVFFLLLAEIIPP 320
L++ + + FLS +F P+D+ + +LC S LL T + + + P
Sbjct: 31 FLLLLGLLLCFLSTFLFIGKPTDATCILRRFLFGLGFTLCFSCLLVKTNRIVRIFKKSSP 90
Query: 321 TSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIE 372
+ L K L ++ +TL V+ + V T + P ++ +E
Sbjct: 91 GRPRLKSLPKGQLLIVLGLTLVQVIICVIWLVVDPPFPTKDIHPEKGEIILE 142
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 32.4 bits (74), Expect = 0.62
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 273 IIPCVGISFLSVLVFYLPSD--SGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGK 330
+ G S SV+ L D GE++S SIL+ + +A PLLG
Sbjct: 101 FVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVA----------PLLGG 150
Query: 331 YLL----FTMILVTLSVVVTIAVLNVNFRSPVTHV 361
Y+L + I LS+ + + F P T
Sbjct: 151 YILVWLSWHAIFAFLSLAGILLSALIFFILPETLP 185
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 31.9 bits (73), Expect = 0.99
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Query: 296 KVSLCISILLS-LTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNF 354
+ L I +L + L + LL + + L + LL T L ++ + L V
Sbjct: 781 RFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAFTVLVLIQLLLTLAVRS 840
Query: 355 RSPVTHVMKPWVHKVFIEVLPKILFIQ 381
R + +K L I+ +Q
Sbjct: 841 RGRPFLSSLLFSNKYLWLALLVIIILQ 867
>gnl|CDD|224596 COG1682, TagG, ABC-type polysaccharide/polyol phosphate export
systems, permease component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 263
Score = 31.4 bits (72), Expect = 1.0
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 301 ISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFR 355
+ L+ L + + L + S LL L +IL ++ + + +A L V FR
Sbjct: 120 FNFLIHLIIILIFLIILGVEPSWHWLLL-LPALLLLILFSVGLGLILASLGVRFR 173
>gnl|CDD|217972 pfam04224, DUF417, Protein of unknown function, DUF417. This
family of uncharacterized proteins appears to be
restricted to proteobacteria.
Length = 153
Score = 30.1 bits (68), Expect = 1.4
Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 4/103 (3%)
Query: 255 IIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLL 314
IIF K Y I P V S L ++ + VS + I V LLL
Sbjct: 24 IIFIWIGGLKFFPYEAEAIKPFVSNSPLMSFLYEFLKNGTYGVSYLLGIT-ETIVGILLL 82
Query: 315 AEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSP 357
+ P LLG L+F +VTLS ++T V P
Sbjct: 83 IGLRNPK---AGLLGGLLVFVTFIVTLSFLITTPEAWVPSLGP 122
>gnl|CDD|163445 TIGR03733, lanti_perm_MutG, lantibiotic protection ABC transporter
permease subunit, MutG family. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family is largely restricted to
gallidermin-family lantibiotic cassettes, but also
include orphan transporter cassettes in species that
lack candidate lantibiotic precursor and synthetase
genes. In most species, this subunit is paralogous to an
adjacent gene modeled separate by TIGR03732, while in
some species only one subunit is found.
Length = 248
Score = 30.7 bits (70), Expect = 1.4
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 278 GISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMI 337
++LS L+ L + S L++ +F L ++ +L + L +L+ ++
Sbjct: 88 YKAYLSKLLLLL-------LCGFFSTFLAIGIFALGFKYLLKVANLPLSL---FLIAALL 137
Query: 338 LVTLSVVVTIAVLNVNFR 355
L+ S+ + I L V+F
Sbjct: 138 LIIGSLFLYIIHLFVSFA 155
>gnl|CDD|225601 COG3059, COG3059, Predicted membrane protein [Function unknown].
Length = 182
Score = 30.2 bits (68), Expect = 1.7
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 301 ISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTH 360
+S LL +T + + +I + LLG L+F +VTLS ++T VN +
Sbjct: 89 VSNLLGITEVIVGILVLIGLRNPKAGLLGGLLVFGTPIVTLSFLITTPEAWVN-----SL 143
Query: 361 VMKPWVHKVFIEVLPKILFI 380
P++ VL IL +
Sbjct: 144 YGFPYLSGAGRLVLKDILML 163
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 30.4 bits (69), Expect = 2.5
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 10/109 (9%)
Query: 257 FNITLRRKTLFYT--VNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLL 314
L+ L + L+ V + L Y+ S + S +L+ LL
Sbjct: 203 IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALL 262
Query: 315 AEIIPPTSLTVPLLGKYLLFTMILVTLSVVV-TIAVLNVNFRSPVTHVM 362
+L + LLG+Y M L+T ++ V +A+L V P +
Sbjct: 263 G------ALLLGLLGRY-FKRMALMTGAIFVIGLAILVVGLTPPNFPLF 304
>gnl|CDD|234052 TIGR02900, spore_V_B, stage V sporulation protein B. SpoVB is the
stage V sporulation protein B of the bacterial endopore
formation program in Bacillus subtilis and various other
Firmcutes. It is nearly universal among
endospore-formers. Paralogs with rather high sequence
similarity to SpoVB exist, including YkvU in B. subtilis
and a number of proteins in the genus Clostridium.
Member sequences for the seed alignment were chosen to
select those proteins, no more than one to a genome,
closest to B. subtilis SpoVB in a neighbor joining tree
[Cellular processes, Sporulation and germination].
Length = 488
Score = 30.0 bits (68), Expect = 4.1
Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 255 IIFNITLRRKTLFYTVNL------IIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLT 308
I N+ +K + T++L + + + L+ Y+ + ++L + I+L +
Sbjct: 424 TILNLAEIKKNIRITIDLSDFLIFALLGILVYLGLSLLKYIIFNPNILINLLLIIILGFS 483
Query: 309 VFFLL 313
++ LL
Sbjct: 484 LYILL 488
>gnl|CDD|226999 COG4652, COG4652, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 657
Score = 29.7 bits (67), Expect = 5.0
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 272 LIIPCVGISFLSVLVFY----LPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPL 327
I+ +G+ FLS+L F L S L ISILLSL LL + + L
Sbjct: 223 SILWILGLLFLSLLFFRRFGVLFS---LLFFLMISILLSLISLLLLSRLSLANL-IKGKL 278
Query: 328 LGKYLLFTMILVTLSVVVTIAVL 350
K +F + + L V+ +
Sbjct: 279 PFKRSMFLLTVCKLVAVLIVVSS 301
>gnl|CDD|191128 pfam04923, Ninjurin, Ninjurin. Ninjurin (nerve injury-induced
protein) is involved in nerve regeneration and in the
formation and function in some tissues.
Length = 100
Score = 27.5 bits (62), Expect = 5.4
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 299 LCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVN 353
L ISI+L + V LLL +I ++ + ILV L VV + +
Sbjct: 48 LSISIVLQVVVGILLL--LISRLNINKRKADRLNNAATILVFLITVVNVLISAFG 100
>gnl|CDD|193205 pfam12729, 4HB_MCP_1, Four helix bundle sensory module for signal
transduction. This family is a four helix bundle that
operates as a ubiquitous sensory module in prokaryotic
signal-transduction. The 4HB_MCP is always found between
two predicted transmembrane helices indicating that it
detects only extracellular signals. In many cases the
domain is associated with a cytoplasmic HAMP domain
suggesting that most proteins carrying the bundle might
share the mechanism of transmembrane signalling which is
well-characterized in E coli chemoreceptors.
Length = 181
Score = 28.3 bits (64), Expect = 6.6
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 27/110 (24%)
Query: 21 FLVFSVIIA-----------QGNDEAKRLYDD-LLSNYNRLIRPVGNNSDKLTVKMGLKL 68
FL+ ++++ + N ++ +Y+D LL I+ +G L
Sbjct: 12 FLLLALLLIIVGIVGLYSLKKINKNSETMYEDRLLP-----IKWLGEIRSNL-------- 58
Query: 69 SQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDY-KLKWSPEE 117
+ I NL I+TT+ L I +++ + Y K + EE
Sbjct: 59 -REIRANLLELILTTDPAERDELLKDIEELRAEIDKLLKKYEKTILTEEE 107
>gnl|CDD|218741 pfam05771, Pox_A31, Poxvirus A31 protein.
Length = 114
Score = 27.4 bits (61), Expect = 7.6
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 12/46 (26%)
Query: 256 IFN-ITLRRKTLFYTVNLIIP----CV---GISFLSVLVFYLPSDS 293
IFN + KT F + L +P ++F +FY P DS
Sbjct: 3 IFNLLRFLEKTYFSGLALALPKKKKAYDHKNMTF----IFYKPKDS 44
>gnl|CDD|237756 PRK14559, PRK14559, putative protein serine/threonine phosphatase;
Provisional.
Length = 645
Score = 28.9 bits (65), Expect = 7.8
Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 12/83 (14%)
Query: 402 VFDVPDYVDYGGRYQTDFDIPSLPPSRYDVSNTGSTVVPCYGDPLPISNLEA-------- 453
Y+D G RYQ +P + V+ C PL S LEA
Sbjct: 87 SPLYGSYLDPGQRYQLLASSEEIPTAAAHT-ELQGRVLDCQ--PLQPSPLEALLEQLEDL 143
Query: 454 -DDIMFSPTSMCPPTQDGTDVSP 475
+ + + +
Sbjct: 144 LNPLADPTEVLPTLLWQQLGIPA 166
>gnl|CDD|240528 cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug
and toxic compound extrusion (MATE)-like proteins.
Escherichia coli MurJ (MviN) has been identified as
essential for murein biosynthesis. It has been suggested
that MurJ functions as the peptidoglycan lipid II
flippase which is involved in translocation of
lipid-anchored peptidoglycan precursors across the
cytoplasmic membrane, though results obtained in
Bacillus subtilis seem to indicate that its MurJ
homologs are not essential for growth. Some MviN family
members (e.g. in Mycobacterium tuberculosis) possess an
extended C-terminal region that contains an
intracellular pseudo-kinase domain and an extracellular
domain resembling carbohydrate-binding proteins.
Proteins from the MATE family are involved in exporting
metabolites across the cell membrane and are often
responsible for multidrug resistance (MDR).
Length = 420
Score = 29.0 bits (66), Expect = 8.5
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 20/92 (21%)
Query: 280 SFLSVLVFYLPSDSGEKVSLCISILLSLTVFFL----LLAEIIPP--------------T 321
+F+ V YL + E+ S +L+L + L LL + P
Sbjct: 53 AFVPVFSEYLEKEGEEEARRFASRVLTLLLLVLLLLTLLGILFAPLLVKLLAPGFSGDKF 112
Query: 322 SLTVPLLGKYLLFTMILVTLSVVVTIAVLNVN 353
L V L + + ++ ++LS ++ +LN +
Sbjct: 113 ELAVALT-RIMFPYLLFISLSALLG-GILNAH 142
>gnl|CDD|237877 PRK14976, PRK14976, 5'-3' exonuclease; Provisional.
Length = 281
Score = 28.4 bits (64), Expect = 8.8
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 14/64 (21%)
Query: 55 NNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLK-- 112
N DK+ K+ KLS+ E L ++ + T + T+V ++ + ED KLK
Sbjct: 219 ENIDKIKKKIKNKLSEAKEKALLSKKLAT------------IKTDVPLDFQIEDIKLKKL 266
Query: 113 WSPE 116
PE
Sbjct: 267 DQPE 270
>gnl|CDD|226614 COG4129, COG4129, Predicted membrane protein [Function unknown].
Length = 332
Score = 28.5 bits (64), Expect = 9.7
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 281 FLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLL----GKYLLF-- 334
L+VL F L + + + I++ L V L ++P T + +L L
Sbjct: 69 ILAVLFFLLFGQNPIAFGVVLLIIIPLLVLLKLENGVVPITVGVLHILVAAMIPLFLIFN 128
Query: 335 TMILVTLSVVVTIAVLNVNFRSP 357
+LV + V V V V
Sbjct: 129 RFLLVFVGVGVAFLVNLVMPPPD 151
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.141 0.444
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,692,889
Number of extensions: 2985812
Number of successful extensions: 2651
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2630
Number of HSP's successfully gapped: 73
Length of query: 555
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 453
Effective length of database: 6,413,494
Effective search space: 2905312782
Effective search space used: 2905312782
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.6 bits)