RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7429
(555 letters)
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 468 bits (1206), Expect = e-162
Identities = 166/383 (43%), Positives = 242/383 (63%), Gaps = 26/383 (6%)
Query: 15 LFPSLTFLVFSVI-IAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIE 73
L L+FS + G++ RL +LL NYN++IRPV +++ + + +GL+L QLI
Sbjct: 7 WHVGLVLLLFSCCGLVLGSEHETRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLI- 65
Query: 74 VNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWL 133
N + NQI+ TNV + Q+W D +L+W+P +YGG+ + +PS+ +WL
Sbjct: 66 --------------NVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWL 111
Query: 134 PDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFG 193
PD+VLYNNADG++ + MTK +L Y GK++W PPAI+KS+CEI V +FPFD Q C MK G
Sbjct: 112 PDLVLYNNADGDFAIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLG 171
Query: 194 SWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCC-EEPY 252
WTYDG V + DL + S EW + ++ +Y+CC + PY
Sbjct: 172 IWTYDGTKVSISPE---------SDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPY 222
Query: 253 PDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFL 312
DI ++ ++R L++ VN+IIPC+ SFL+VLVFYLP+DSGEK++L IS+LLSLTVF L
Sbjct: 223 LDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLL 282
Query: 313 LLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIE 372
++ E+IP TS VPL+GKY+LFTMI V S++VT+ V+N + RSP TH M WV K+FI
Sbjct: 283 VIVELIPSTSSAVPLIGKYMLFTMIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIFIN 342
Query: 373 VLPKILFIQRPAKDNDDDLDKPP 395
+P ++F + + + +
Sbjct: 343 TIPNVMFFSTMKRASKEKQENKI 365
Score = 63.1 bits (153), Expect = 9e-11
Identities = 20/45 (44%), Positives = 33/45 (73%)
Query: 511 LLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
+ T + Q+W D +L+W+P +YGG+ + +PS+ +WLPD+VLYN
Sbjct: 74 VETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYN 118
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 456 bits (1175), Expect = e-157
Identities = 155/380 (40%), Positives = 226/380 (59%), Gaps = 19/380 (5%)
Query: 19 LTFLVFSVIIAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKN 78
+ + ++ + L L NYN +RP DK+TV++GL L+ L+ +N KN
Sbjct: 12 VVMMALALSGVGASVMEDTLLSVLFENYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKN 71
Query: 79 QIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVL 138
+ MTT+V++N W DY+L+W P Y G+ L +PS+ +W PDIVL
Sbjct: 72 EEMTTSVFLNLA---------------WTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVL 116
Query: 139 YNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYD 198
NN DG++E+T+ ++ + G V W+P AIY+S C I V YFPFD Q C M F S+TYD
Sbjct: 117 MNNNDGSFEITLHVNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYD 176
Query: 199 GYTVDLKHIL-QGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIF 257
V L+H L + + +I I+ + + +W I P+ +N + + Y D+ F
Sbjct: 177 TSEVILQHALDAKGEREVKEIMINQDAFTENGQWSIEHKPSRKN---WRSDDPSYEDVTF 233
Query: 258 NITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEI 317
+ ++RK LFY V I+PC+ IS L++LVFYLP D+GEK+SL IS LL+LTVF LLLA+
Sbjct: 234 YLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLADK 293
Query: 318 IPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKI 377
+P TSL+VP++ YL+F MILV SV++++ VLN++ RSP TH M W+ ++FIE LP
Sbjct: 294 VPETSLSVPIIISYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPF 353
Query: 378 LFIQRPAKDNDDDLDKPPDG 397
L+IQRP D
Sbjct: 354 LWIQRPVTTPSPDSKPTIIS 373
Score = 64.8 bits (157), Expect = 3e-11
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 511 LLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
+ T + W DY+L+W P Y G+ L +PS+ +W PDIVL N
Sbjct: 74 MTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMN 118
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 455 bits (1172), Expect = e-156
Identities = 147/389 (37%), Positives = 216/389 (55%), Gaps = 21/389 (5%)
Query: 13 HVLFPSLTFLVFSVIIAQGNDEAKRLYDDLL--SNYNRLIRPVGNNSDKLTVKMGLKLSQ 70
++ F L G +E +RL +DLL + YN+ +RPV +N++ + + + L LS
Sbjct: 3 NIHFVYLLISCLYYSGCSGVNEEERLINDLLIVNKYNKHVRPVKHNNEVVNIALSLTLSN 62
Query: 71 LIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEH 130
LI + ++ +TTNVW++ W D++L W+ EY + L + E
Sbjct: 63 LISLKETDETLTTNVWMDHA---------------WYDHRLTWNASEYSDISILRLRPEL 107
Query: 131 IWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVM 190
IW+PDIVL NN DG Y V ++ +G V W PPAI++S C I+V YFPFD Q C +
Sbjct: 108 IWIPDIVLQNNNDGQYNVAYFCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSL 167
Query: 191 KFGSWTYDGYTVDLKHILQGPDSDKI---DIGIDLQDYYLSVEWDIMKVPAVRNEKFYSC 247
KF + Y+ + + + D I ID + + + EW+I+ PA +N
Sbjct: 168 KFTALNYNANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEIIHKPAKKNIYGDKF 227
Query: 248 -CEEPYPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLS 306
Y D+ F + +RRK LFY +N I PCV ISFL+ L FYLP++SGEK+S I +LL+
Sbjct: 228 PNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLA 287
Query: 307 LTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWV 366
VF LL ++ +P T+L VPL+GKYL+F M LVT VV VLN +FR+P THV+ V
Sbjct: 288 QAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIVLNFHFRTPSTHVLSTRV 347
Query: 367 HKVFIEVLPKILFIQRPAKDNDDDLDKPP 395
++F+E LP+IL + R + D
Sbjct: 348 KQIFLEKLPRILHMSRVDEIEQPDWQNDL 376
Score = 64.0 bits (155), Expect = 6e-11
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 511 LLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
L T + W D++L W+ EY + L + E IW+PDIVL N
Sbjct: 73 LTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQN 117
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 446 bits (1148), Expect = e-154
Identities = 154/346 (44%), Positives = 222/346 (64%), Gaps = 25/346 (7%)
Query: 32 NDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNL 91
++ RL +LL NYN++IRPV +++ + + +GL+L QLI N +
Sbjct: 1 SEHETRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLI---------------NVDE 45
Query: 92 KNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIM 151
NQI+ TNV + Q+W D +L+W+P +YGG+ + +PS+ +WLPD+VLYNNADG++ + M
Sbjct: 46 VNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHM 105
Query: 152 TKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGP 211
TK +L Y GK++W PPAI+KS+CEI V +FPFD Q C MK G WTYDG V +
Sbjct: 106 TKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISP----- 160
Query: 212 DSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCC-EEPYPDIIFNITLRRKTLFYTV 270
DL + S EW + ++ +Y+CC + PY DI ++ ++R L++ V
Sbjct: 161 ----ESDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVV 216
Query: 271 NLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGK 330
N+IIPC+ SFL+VLVFYLP+DSGEK++L IS+LLSLTVF L++ E+IP TS VPL+GK
Sbjct: 217 NVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGK 276
Query: 331 YLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPK 376
Y+LFTMI V S++VT+ V+N + RSP TH V + +
Sbjct: 277 YMLFTMIFVISSIIVTVVVINTHHRSPSTHSAIEGVKYIAEHMKSD 322
Score = 73.4 bits (180), Expect = 3e-14
Identities = 20/45 (44%), Positives = 33/45 (73%)
Query: 511 LLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
+ T + Q+W D +L+W+P +YGG+ + +PS+ +WLPD+VLYN
Sbjct: 50 VETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYN 94
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 446 bits (1147), Expect = e-153
Identities = 140/366 (38%), Positives = 214/366 (58%), Gaps = 18/366 (4%)
Query: 33 DEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLK 92
+E RL + LL +Y++ I+P + V + L L+ LI + N K
Sbjct: 1 NEEGRLIEKLLGDYDKRIKPAKTLDHVIDVTLKLTLTNLI---------------SLNEK 45
Query: 93 NQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMT 152
+ +TTNVW+ +W DY+L W+ EY G+D + +PSE +WLPD+VL NN DG +EV
Sbjct: 46 EEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYA 105
Query: 153 KAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPD 212
+++ DG + W PPAIY+S C I V YFPFD Q C + F S TY+ + V+L+ +
Sbjct: 106 NVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAE-EG 164
Query: 213 SDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEE-PYPDIIFNITLRRKTLFYTVN 271
I ID +D+ + EW I PA +N + ++ + +IIF + ++RK LFY +N
Sbjct: 165 EVVEWIHIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIIN 224
Query: 272 LIIPCVGISFLSVLVFYLPSDS-GEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGK 330
+I PCV IS L VLV++LP+ + G+K +L IS+LL+ T+F L+A+ +P TSL VPL+GK
Sbjct: 225 IIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGK 284
Query: 331 YLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAKDNDDD 390
YL+F M + + V + VLNV+ R+P TH + + +F+E LPK L + + +
Sbjct: 285 YLIFVMFVSLVIVTNCVIVLNVSLRTPNTHSLSEKIKHLFLEFLPKYLGMHLEPSEETPE 344
Query: 391 LDKPPD 396
+P
Sbjct: 345 KPQPRR 350
Score = 66.3 bits (161), Expect = 9e-12
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 511 LLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
L T + +W DY+L W+ EY G+D + +PSE +WLPD+VL N
Sbjct: 49 LTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLEN 93
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 440 bits (1134), Expect = e-152
Identities = 142/348 (40%), Positives = 206/348 (59%), Gaps = 26/348 (7%)
Query: 36 KRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQI 95
L L NYN +RP DK+TV++GL L+ L+ +N KN+ MTT+V++N
Sbjct: 5 DTLLSVLFENYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNL------ 58
Query: 96 MTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAI 155
W DY+L+W P Y G+ L +PS+ +W PDIVL NN DG++E+T+ +
Sbjct: 59 ---------AWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMNNNDGSFEITLHVNVL 109
Query: 156 LHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDK 215
+ + G V W+P AIY+S C I V YFPFD Q C M F S+TYD V L+H
Sbjct: 110 VQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQH--------A 161
Query: 216 IDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYTVNLIIP 275
+D I+ + + +W I P+ +N + + Y D+ F + ++RK LFY V I+P
Sbjct: 162 LDAMINQDAFTENGQWSIEHKPSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVP 218
Query: 276 CVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFT 335
C+ IS L++LVFYLP D+GEK+SL IS LL+LTVF LLLA+ +P TSL+VP++ YL+F
Sbjct: 219 CILISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLADKVPETSLSVPIIISYLMFI 278
Query: 336 MILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRP 383
MILV SV++++ VLN++ RSP TH + + ++ F
Sbjct: 279 MILVAFSVILSVVVLNLHHRSPNTHEAVEAIKYIAEQLESASEFDDLK 326
Score = 72.6 bits (178), Expect = 5e-14
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 511 LLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
+ T + W DY+L+W P Y G+ L +PS+ +W PDIVL N
Sbjct: 50 MTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMN 94
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 434 bits (1118), Expect = e-150
Identities = 133/353 (37%), Positives = 201/353 (56%), Gaps = 25/353 (7%)
Query: 33 DEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLK 92
+E RL + LL +Y++ I+P + V + L L+ LI + N K
Sbjct: 1 NEEGRLIEKLLGDYDKRIKPAKTLDHVIDVTLKLTLTNLI---------------SLNEK 45
Query: 93 NQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMT 152
+ +TTNVW+ +W DY+L W+ EY G+D + +PSE +WLPD+VL NN DG +EV
Sbjct: 46 EEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYA 105
Query: 153 KAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPD 212
+++ DG + W PPAIY+S C I V YFPFD Q C + F S TY+ + V+L+
Sbjct: 106 NVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQL------ 159
Query: 213 SDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEE-PYPDIIFNITLRRKTLFYTVN 271
+ GID +D+ + EW I PA +N + ++ + +IIF + ++RK LFY +N
Sbjct: 160 --SAEEGIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIIN 217
Query: 272 LIIPCVGISFLSVLVFYLPSD-SGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGK 330
+I PCV IS L VLV++LP+ G+K +L IS+LL+ T+F L+A+ +P TSL VPL+GK
Sbjct: 218 IIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGK 277
Query: 331 YLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRP 383
YL+F M + + V + VLNV+ R+P TH + + +
Sbjct: 278 YLIFVMFVSLVIVTNCVIVLNVSLRTPNTHSCVEACNFIAKSTKEQNDSGSEN 330
Score = 71.1 bits (174), Expect = 2e-13
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 511 LLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
L T + +W DY+L W+ EY G+D + +PSE +WLPD+VL N
Sbjct: 49 LTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLEN 93
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 430 bits (1108), Expect = e-148
Identities = 134/354 (37%), Positives = 200/354 (56%), Gaps = 30/354 (8%)
Query: 33 DEAKRLYDDLL--SNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQN 90
+E +RL +DLL + YN+ +RPV +N++ + + + L LS LI + ++ +TTNVW++
Sbjct: 2 NEEERLINDLLIVNKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDH- 60
Query: 91 LKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTI 150
W D++L W+ EY + L + E IW+PDIVL NN DG Y V
Sbjct: 61 --------------AWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQNNNDGQYNVAY 106
Query: 151 MTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQG 210
++ +G V W PPAI++S C I+V YFPFD Q C +KF + Y+ + +
Sbjct: 107 FCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISM------ 160
Query: 211 PDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSC-CEEPYPDIIFNITLRRKTLFYT 269
D+ ID + + + EW+I+ PA +N Y D+ F + +RRK LFY
Sbjct: 161 ------DLIIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYV 214
Query: 270 VNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLG 329
+N I PCV ISFL+ L FYLP++SGEK+S I +LL+ VF LL ++ +P T+L VPL+G
Sbjct: 215 INFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIG 274
Query: 330 KYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRP 383
KYL+F M LVT VV VLN +FR+P TH + + ++ K + +
Sbjct: 275 KYLMFIMSLVTGVVVNCGIVLNFHFRTPSTHSGIDSTNYIVKQIKEKNAYDEEV 328
Score = 70.7 bits (173), Expect = 3e-13
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 511 LLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
L T + W D++L W+ EY + L + E IW+PDIVL N
Sbjct: 52 LTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQN 96
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 384 bits (989), Expect = e-131
Identities = 60/329 (18%), Positives = 117/329 (35%), Gaps = 31/329 (9%)
Query: 44 SNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVN 103
+ + + P + LTV G+ L + ++ + N +++
Sbjct: 4 AAQDMVSPPPPIADEPLTVNTGIYLIESYSLDDCAETFKVNAFLSL-------------- 49
Query: 104 QEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVV 163
W+D +L + P G V E IW+P+I N + + + DG V
Sbjct: 50 -SWKDRRLAFDPVRSG-VRVKTYEPEAIWIPEIRFVNVENA--RDADVVDISVSPDGTVQ 105
Query: 164 WNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQ 223
+ + +D +PFD QT + + D + L L+ +
Sbjct: 106 YLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEK---------VGKN 156
Query: 224 DYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYTVNLIIPCVGISFLS 283
D WDI AV ++ + + + + + R+ Y N+I+P + I F+S
Sbjct: 157 DDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFIS 216
Query: 284 VLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSV 343
F+ S V+L +S L++ F +L+ +P T + G + + ++V
Sbjct: 217 WTAFWSTS-YEANVTLVVSTLIAHIAFNILVETCLPKTPY-MTYTGAIIFMIYLFYFVAV 274
Query: 344 VVTIAV--LNVNFRSPVTHVMKPWVHKVF 370
+ L V + + F
Sbjct: 275 IEVTVQHYLKVESQPARAASITRASRIAF 303
Score = 59.2 bits (144), Expect = 1e-09
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 517 FLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
W+D +L + P G V E IW+P+I N
Sbjct: 47 LSLSWKDRRLAFDPVRSG-VRVKTYEPEAIWIPEIRFVN 84
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich, Cys-loop,
buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus
musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 312 bits (801), Expect = e-104
Identities = 96/234 (41%), Positives = 137/234 (58%), Gaps = 25/234 (10%)
Query: 32 NDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNL 91
++ RL L +Y+ ++RPV ++ + + V +GL+L QLI V+ NQI+TTNV + Q
Sbjct: 2 SEHETRLEAKLFEDYSSVVRPVEDHREIVQVTVGLQLIQLINVDEVNQIVTTNVRLKQ-- 59
Query: 92 KNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIM 151
+W DY LKW+P++YGGV +H+PSE IW PD+VLYNNADG++ +
Sbjct: 60 -------------QWVDYNLKWNPDDYGGVKKIHIPSEKIWRPDVVLYNNADGDFAIVKF 106
Query: 152 TKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGP 211
TK +L Y G + W PPAI+KS+CEI V +FPFD Q C MK G+ TYDG V +
Sbjct: 107 TKVLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAINP----- 161
Query: 212 DSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCC-EEPYPDIIFNITLRRK 264
DL ++ S EW I + ++ FYSCC PY DI ++ ++R
Sbjct: 162 ----ESDQPDLSNFMESGEWVIKEARGWKHWVFYSCCPTTPYLDITYHFVMQRL 211
Score = 73.2 bits (180), Expect = 5e-15
Identities = 24/37 (64%), Positives = 31/37 (83%)
Query: 519 QEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
Q+W DY LKW+P++YGGV +H+PSE IW PD+VLYN
Sbjct: 59 QQWVDYNLKWNPDDYGGVKKIHIPSEKIWRPDVVLYN 95
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 292 bits (748), Expect = 2e-96
Identities = 69/253 (27%), Positives = 108/253 (42%), Gaps = 31/253 (12%)
Query: 29 AQGNDEAKRLYDDLLSNYNRLIR---PVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNV 85
+ G KRL +LL+ Y +L + P ++ K+ VK GL L L + +
Sbjct: 1 SNGLMA-KRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQR-------- 51
Query: 86 WVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGN 145
N I T V W D L+W PE + + + IW PDI L+N+ D +
Sbjct: 52 ---GMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLD 108
Query: 146 YEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLK 205
+ T+AI+ +G V+W PPA+ K C DV +C +FGSW Y VD+
Sbjct: 109 MTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQ-----DDVDSCHFQFGSWVYSVDEVDIH 163
Query: 206 HILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKT 265
+D ++ + +I++ A R E Y CCE Y ++ + + LR +
Sbjct: 164 F---------MDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSEN 214
Query: 266 LFYTVN--LIIPC 276
T + L
Sbjct: 215 GNSTYSRDLAHHH 227
Score = 64.9 bits (158), Expect = 4e-12
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 519 QEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
W D L+W PE + + + IW PDI L+N
Sbjct: 67 LSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFN 103
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 291 bits (747), Expect = 3e-96
Identities = 60/244 (24%), Positives = 95/244 (38%), Gaps = 28/244 (11%)
Query: 31 GNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQN 90
RL DL + + P D LTV +G L +++ + +
Sbjct: 11 SQANLMRLKSDLFNRSP--MYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVD-------- 60
Query: 91 LKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTI 150
+ Q W+ L W P EYG + + IW PDI Y++ +V
Sbjct: 61 -------LVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRP-VQVLS 112
Query: 151 MTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQG 210
A++ +DG V++ P C+ + TC +KFGSW Y G+ +DLK
Sbjct: 113 PQIAVVTHDGSVMFIPAQRLSFMCDPTG-VDSEEGATCAVKFGSWVYSGFEIDLKT---- 167
Query: 211 PDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYTV 270
+DL YY S +++I+ R + YSCC EPY D+ + R +
Sbjct: 168 -----DTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGF 222
Query: 271 NLII 274
+
Sbjct: 223 FRNL 226
Score = 66.0 bits (161), Expect = 2e-12
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 519 QEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
Q W+ L W P EYG + + IW PDI Y+
Sbjct: 67 QRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYS 103
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 294 bits (754), Expect = 6e-96
Identities = 53/345 (15%), Positives = 118/345 (34%), Gaps = 40/345 (11%)
Query: 52 PVGNNSDK--LTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDY 109
P N +D + V + + ++++ VN Q + ++ +W
Sbjct: 2 PADNAADARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVA---------------QWTGK 46
Query: 110 KLKWSPEEYGGVDTL---HVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNP 166
K ++ V+ + +W+P + N T + +L DG+V++N
Sbjct: 47 PRKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGS--PDTGNKRLMLFPDGRVIYNA 104
Query: 167 PAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYY 226
+ ++D FPFD Q V++ ++Y+ + I + + D
Sbjct: 105 RFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSD---------IQVYTENIDNE 155
Query: 227 LSVEWDIMKVPAVRNEKF-YSCCEE------PYPDIIFNITLRRKTLFYTVNLIIPCVGI 279
EW I + Y + I I R +Y + I+P I
Sbjct: 156 EIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLI 215
Query: 280 SFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILV 339
S VF+L S S E++ +++L++ + + I+P ++ + ++ +
Sbjct: 216 IAASWSVFWLESFS-ERLQTSFTLMLTVVAYAFYTSNILPRLPY-TTVIDQMIIAGYGSI 273
Query: 340 TLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPA 384
++++ I + ++ F I +
Sbjct: 274 FAAILLIIFAHHRQANGVEDDLLIQRCRLAFPLGFLAIGCVLVIR 318
Score = 49.3 bits (118), Expect = 2e-06
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 517 FLQEWEDYKLKWSPEEYGGVDTL---HVPSEHIWLPDIVLYN 555
+ +W K ++ V+ + +W+P + N
Sbjct: 39 IVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFIN 80
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 293 bits (751), Expect = 3e-95
Identities = 61/351 (17%), Positives = 129/351 (36%), Gaps = 28/351 (7%)
Query: 34 EAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKN 93
++K L S Y+ +RP +N + V + + L + ++++ N + + + +
Sbjct: 2 DSKILAHLFTSGYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRE---- 57
Query: 94 QIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVP-SEHIWLPDIVLYNNADGNYEVTIMT 152
W D +L + + G D + + IW+PD N
Sbjct: 58 -----------SWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKP 106
Query: 153 KAIL--HYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQG 210
++ H DG V+++ C + ++Y+P DVQ C + S+ Y ++
Sbjct: 107 NVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHS 166
Query: 211 PDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYTV 270
P K+ + L + L Y + I L+R+ FY +
Sbjct: 167 PLQLKVGLSSSLPSFQL--------TNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLL 218
Query: 271 NLIIPCVGISFLSVLVFYLPSDS-GEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLG 329
L IP + +S + F+ + +V+L ++ LL++T + +PP S + +
Sbjct: 219 QLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVS-YIKAID 277
Query: 330 KYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFI 380
++ M + +++ V ++ + L +LF
Sbjct: 278 VWIGACMTFIFCALLEFALVNHIANAGTTEWNDISKRVDLISRALFPVLFF 328
Score = 54.4 bits (131), Expect = 4e-08
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 519 QEWEDYKLKWSPEEYGGVDTLHVP-SEHIWLPDIVLYN 555
+ W D +L + + G D + + IW+PD N
Sbjct: 57 ESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPN 94
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 278 bits (712), Expect = 2e-91
Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 29/232 (12%)
Query: 33 DEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLK 92
+ ++LY +L+ NYN + P +TV L L Q+++V+ KNQ++
Sbjct: 1 EFQRKLYKELVKNYNPDVIPT-QRDRPVTVYFSLSLLQIMDVDEKNQVVD---------- 49
Query: 93 NQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMT 152
W+ W D+ L+W+ EY GV + VP +W+PD+ YN EV
Sbjct: 50 -----VVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISK-PEVLTPQ 103
Query: 153 KAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPD 212
A+++ G V + P + C++ TC +KFGSWT+ +DL+
Sbjct: 104 LALVNSSGHVQYLPSIRQRFSCDVSGVDTE-SGATCKLKFGSWTHHSRELDLQM------ 156
Query: 213 SDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
D+ Y ++++ V R+E+FY CC+EPYPD+ F +T R+K
Sbjct: 157 -----QEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKK 203
Score = 66.4 bits (162), Expect = 1e-12
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 519 QEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
W D+ L+W+ EY GV + VP +W+PD+ YN
Sbjct: 56 MSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYN 92
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Length = 211
Score = 272 bits (698), Expect = 3e-89
Identities = 52/233 (22%), Positives = 87/233 (37%), Gaps = 30/233 (12%)
Query: 41 DLLSNYNRLIRPV---GNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMT 97
D+L N + RP + V + LK ++EVN + W
Sbjct: 6 DILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQT-------- 57
Query: 98 TNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILH 157
W D L W+ D + VP +W+PD+ YN EV A +
Sbjct: 58 -------TWSDRTLAWNSSHSP--DQVSVPISSLWVPDLAAYNAISK-PEVLTPQLARVV 107
Query: 158 YDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKID 217
DG+V++ P + C++ TC +K GSWT+ + + +
Sbjct: 108 SDGEVLYMPSIRQRFSCDVSGVDTE-SGATCRIKIGSWTHHSREISVDP--------TTE 158
Query: 218 IGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYTV 270
D + + ++I+ V +N YSCC E Y D+ ++ R+K +
Sbjct: 159 NSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRSEIL 211
Score = 59.1 bits (143), Expect = 3e-10
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 519 QEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
W D L W+ D + VP +W+PD+ YN
Sbjct: 57 TTWSDRTLAWNSSHSP--DQVSVPISSLWVPDLAAYN 91
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein,
glycprotein, IGG fold, immunoglobulin domain, pentamer,
signal; HET: CXS; 2.0A {Bulinus truncatus}
Length = 203
Score = 267 bits (685), Expect = 2e-87
Identities = 51/231 (22%), Positives = 94/231 (40%), Gaps = 31/231 (13%)
Query: 37 RLYDDLLS--NYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQ 94
++ LL+ + P+ +N+ L V + KL ++E + + + +W
Sbjct: 1 QIRWTLLNQITGESDVIPL-SNNTPLNVSLNFKLMNIVEADTEKDQVEVVLWTQA----- 54
Query: 95 IMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKA 154
W+ +D + +P +W PD+ YN E+ +
Sbjct: 55 ----------SWKVPYYSS-LLSSSSLDQVSLPVSKMWTPDLSFYNAIAA-PELLSADRV 102
Query: 155 ILHYDGKVVWNPPAIYKSFCE-IDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDS 213
++ DG V++ P + C+ I+V+ P TC +K GSWT+D L
Sbjct: 103 VVSKDGSVIYVPSQRVRFTCDLINVDTEPG--ATCRIKVGSWTHDNKQFALITGE----- 155
Query: 214 DKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
+ +++ +Y+ S ++D++ N K YSCCE Y DI R+K
Sbjct: 156 ---EGVVNIAEYFDSPKFDLLSATQSLNRKKYSCCENMYDDIEITFAFRKK 203
Score = 59.8 bits (145), Expect = 1e-10
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 519 QEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
W+ +D + +P +W PD+ YN
Sbjct: 54 ASWKVPYYSS-LLSSSSLDQVSLPVSKMWTPDLSFYN 89
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 217 bits (554), Expect = 6e-68
Identities = 37/223 (16%), Positives = 73/223 (32%), Gaps = 27/223 (12%)
Query: 46 YNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQE 105
+ + P + LTV G+ L + ++ K + N +++
Sbjct: 2 QDMVSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSL---------------S 46
Query: 106 WEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWN 165
W+D +L + P G V E IW+P+I N + + + DG V +
Sbjct: 47 WKDRRLAFDPVRSG-VRVKTYEPEAIWIPEIRFVNVENARD--ADVVDISVSPDGTVQYL 103
Query: 166 PPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDY 225
+ +D D QT + + D + L L+ + D
Sbjct: 104 ERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVDLE---------KVGKNDD 154
Query: 226 YLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFY 268
WDI AV ++ + + + + + R+ +
Sbjct: 155 VFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQGGHH 197
Score = 53.5 bits (129), Expect = 2e-08
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 517 FLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
W+D +L + P G V E IW+P+I N
Sbjct: 43 LSLSWKDRRLAFDPVRSG-VRVKTYEPEAIWIPEIRFVN 80
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic
acetylcholine receptors, transmembrane domain, HFI
junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Length = 164
Score = 203 bits (517), Expect = 4e-63
Identities = 73/144 (50%), Positives = 101/144 (70%)
Query: 240 RNEKFYSCCEEPYPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSL 299
+ + + ++ F RRK LFYT+NLIIPCV I+ L++LVFYLPSD GEK++L
Sbjct: 3 HHHHHSTSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTL 62
Query: 300 CISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVT 359
CIS+LL+LTVF LL+++I+PPTSL VPL+GKYL+FTM+LVT S+V ++ VLNV+ RSP T
Sbjct: 63 CISVLLALTVFLLLISKIVPPTSLDVPLVGKYLMFTMVLVTFSIVTSVCVLNVHHRSPTT 122
Query: 360 HVMKPWVHKVFIEVLPKILFIQRP 383
H + V + + L+I
Sbjct: 123 HTPRGGGGYVAMVIDRLFLWIFVF 146
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane
domain, transport PROT; NMR {Homo sapiens}
Length = 137
Score = 183 bits (466), Expect = 6e-56
Identities = 68/125 (54%), Positives = 85/125 (68%)
Query: 261 LRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPP 320
LFYT+NLIIPC+ IS L+VLVFYLPS+ GEK++LCIS+LLSLTVF LL+ EIIP
Sbjct: 3 AEELPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLLSLTVFLLLITEIIPS 62
Query: 321 TSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFI 380
TS P +G+YLLFTMI VTLS+V+T+ VLNV+ RSP TH + I+ +
Sbjct: 63 TSSVSPSIGEYLLFTMIFVTLSIVITVFVLNVHHRSPETHTGGGGGIDRIFLWMFIIVCL 122
Query: 381 QRPAK 385
Sbjct: 123 LGTVG 127
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A
2k59_B
Length = 227
Score = 170 bits (432), Expect = 7e-50
Identities = 66/123 (53%), Positives = 93/123 (75%)
Query: 266 LFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTV 325
L++ VN+IIPC+ SFL+ LVFYLP+DSGEK++L IS+LLSLTVF L++ E+IP TS V
Sbjct: 2 LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 326 PLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAK 385
PL+GKY+LFTMI V S+++T+ V+N + RSP TH M WV K+FI+ +P ++F +
Sbjct: 62 PLIGKYMLFTMIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKR 121
Query: 386 DND 388
+
Sbjct: 122 ASK 124
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A
1eq8_A
Length = 260
Score = 170 bits (432), Expect = 2e-49
Identities = 64/130 (49%), Positives = 87/130 (66%)
Query: 266 LFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTV 325
LFY +N I PCV ISFL+ L FYLP++SGEK+S IS+LL+ VF LL ++ +P T+L V
Sbjct: 2 LFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 326 PLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAK 385
PL+GKYL+F M LVT +V VLN +FR+P THV+ V ++F+E LP+IL + R +
Sbjct: 62 PLIGKYLMFIMSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADE 121
Query: 386 DNDDDLDKPP 395
D
Sbjct: 122 SEQPDWQNDL 131
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR
{Torpedo marmorata} PDB: 2lkh_A
Length = 140
Score = 163 bits (414), Expect = 2e-48
Identities = 47/116 (40%), Positives = 66/116 (56%), Gaps = 6/116 (5%)
Query: 247 CCEEPYPDIIFNITLRRKT------LFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLC 300
+ I L ++ L++ VN+I PC S L+ LVFYLP+DSGEK++
Sbjct: 25 KIGTESVEAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDSGEKMTES 84
Query: 301 ISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRS 356
S+L SLT + E+IP TS VPL+GKY+LFT V S+ +T V+N + RS
Sbjct: 85 KSVLKSLTEKLKKIVELIPSTSSAVPLIGKYMLFTKEFVESSIKITEEVINTHHRS 140
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Length = 250
Score = 162 bits (410), Expect = 2e-46
Identities = 70/130 (53%), Positives = 94/130 (72%)
Query: 266 LFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTV 325
LFY V IIPC+ IS L++LVFYLP D+GEK+SL IS LL++TVF LLLA+ +P TSL+V
Sbjct: 2 LFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETSLSV 61
Query: 326 PLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAK 385
P++ +YL+F MILV SV++++ VLN++ RSP TH M W+ ++FIE LP L+IQRP
Sbjct: 62 PIIIRYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVT 121
Query: 386 DNDDDLDKPP 395
D
Sbjct: 122 TPSPDSKPTI 131
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1
Length = 260
Score = 156 bits (394), Expect = 4e-44
Identities = 57/132 (43%), Positives = 86/132 (65%), Gaps = 1/132 (0%)
Query: 266 LFYTVNLIIPCVGISFLSVLVFYLPSDSG-EKVSLCISILLSLTVFFLLLAEIIPPTSLT 324
LFY +N+I PCV IS L VLV++LP+ +G +K +L IS+LL+ T+F L+A+ +P TSL
Sbjct: 2 LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLN 61
Query: 325 VPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPA 384
VPL+GKYL+F M + L V+ + VLNV+ R+P TH + + +F+ LPK L +Q
Sbjct: 62 VPLIGKYLIFVMFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQLEP 121
Query: 385 KDNDDDLDKPPD 396
+ + +P
Sbjct: 122 SEETPEKPQPRR 133
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 0.001
Identities = 62/467 (13%), Positives = 133/467 (28%), Gaps = 140/467 (29%)
Query: 145 NYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDL 204
++E Y + A +F DV+ P + + ++
Sbjct: 8 DFETGEHQ---YQYKDILSVFEDAFVDNFDCKDVQDMPKSILS-------------KEEI 51
Query: 205 KHILQGPDSDK-----IDI--------------GIDLQDY-YLSVEW-DIMKVPAVRNEK 243
HI+ D+ + +Y +L + P++
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 244 FYSCCEEPYPDI-IF---NITLRRKTLFYTVNLII----PCVGISFLSVLVFYLPSDSGE 295
+ + Y D +F N++ R + + + P + + SG
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVS--RLQPYLKLRQALLELRPAKNV------LIDGVLGSG- 162
Query: 296 KVSLCISILLSLT--------VFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTI 347
K + + + LS +F+L L P ++ +L L
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-----------LEMLQKLLY---- 207
Query: 348 AVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAKDNDDDLDKPPDGVLTEVFDVPD 407
++ N+ S H + I+ + L +P + + L VL V +
Sbjct: 208 -QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE---NCLL-----VLLNVQN-AK 257
Query: 408 YVDYGGRYQTDFDIPS--LPPSRY-----DVSNTGSTVVPCYGDPLPISNLEADDIMFS- 459
+ F++ L +R+ +S +T + + ++ E +
Sbjct: 258 AWNA-------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLK 309
Query: 460 ---------PTSMCPPTQDGTDVSPTFDNQMI---LMPRPLTW-RLPYELPSKLARLASI 506
P + +P +I + TW + KL +
Sbjct: 310 YLDCRPQDLPREVL-------TTNP-RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 507 HFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVL 553
++L P +Y+ + + D L V +P I+L
Sbjct: 362 -SLNVLEP-------AEYR-----KMF---DRLSVFPPSAHIPTILL 392
Score = 32.9 bits (74), Expect = 0.30
Identities = 52/345 (15%), Positives = 106/345 (30%), Gaps = 115/345 (33%)
Query: 53 VGN-NSDKLTVKMGLKLSQLIEVNL-------KNQIMTTNVWVNQNLKNQIMTT------ 98
+ N NS + ++M KL I+ N N + + + L+ + +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCL 247
Query: 99 ----NVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIM--- 151
NV + W + L L + + + D + +A +++
Sbjct: 248 LVLLNVQNAKAWNAFNL--------SCKIL-LTTRFKQVTDFL---SAATTTHISLDHHS 295
Query: 152 -------TKAILHYDGKVVWN-----PPAIYKSFCEIDVEYFPFDVQTC--VMKFGSWTY 197
K++L K + P + + P + ++ G T+
Sbjct: 296 MTLTPDEVKSLL---LKYLDCRPQDLPREV----LTTN----PRRLSIIAESIRDGLATW 344
Query: 198 DGYTVDLKHILQGPDSDKIDIGI------DLQDYY----------------LSVEWDIMK 235
D + KH+ + I+ + + + + LS+ W +
Sbjct: 345 DNW----KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 236 VPAVRN--EKF--YSCCEE-------PYPDIIFNI--------TLRRKTL--------FY 268
V K YS E+ P I + L R + F
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 269 TVNLIIPCVGISFLSVLVFYLPS-DSGEKVSLCISILLSLTVFFL 312
+ +LI P + F S + +L + + E+++L + L FL
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR--FL 503
Score = 32.5 bits (73), Expect = 0.44
Identities = 44/352 (12%), Positives = 97/352 (27%), Gaps = 129/352 (36%)
Query: 20 TFLVFSVIIAQGNDEAKRLYDDLLS-NYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKN 78
T +F ++++ + ++ +++L NY L+ P+ + ++ + + Q + N
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 79 QIMTT-NVWVNQ---NLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLP 134
Q+ NV Q L+ + +L+ P +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQAL-------------LELR--PAKN---------------- 152
Query: 135 DIVLYNNADGNYEVTIMT---KAIL------------HYDGKVVWNPPAIYKSFCEIDVE 179
+++ G + K + D K+ W
Sbjct: 153 -VLID----G------VLGSGKTWVALDVCLSYKVQCKMDFKIFW--------------- 186
Query: 180 YFPFDVQTCVMKFGSWTYDGYTV----DLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMK 235
+ + + L + + + + D + L +
Sbjct: 187 ----------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS---SNIKLRIHS---- 229
Query: 236 VPAVRNEKFYSCCEEPYPD--II------------FNITLRRKTLFYTVNLIIPCVGISF 281
++ E +PY + ++ FN+ K L T + F
Sbjct: 230 ---IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL--SCKILLTTRFKQV----TDF 280
Query: 282 LSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEI----IPPTSLTV-PLL 328
LS S ++L + SL L + +P LT P
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSL---LLKYLDCRPQDLPREVLTTNPRR 329
Score = 32.5 bits (73), Expect = 0.47
Identities = 30/254 (11%), Positives = 77/254 (30%), Gaps = 72/254 (28%)
Query: 13 HVLFPSLTFLVFSVIIAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLI 72
HV LT ++ S + E ++++D L + P
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRL------SVFPPS------------------ 384
Query: 73 EVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKL--KWSPEEYGGVDTLHVPSEH 130
++ +++ +W + + ++ N + Y L K E
Sbjct: 385 -AHIPTILLSL-IWFDVIKSDVMVVVN-----KLHKYSLVEKQPKEST------------ 425
Query: 131 IWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVM 190
I +P I L E + + HY+ ++ + +D +YF
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP--YLD-QYF--------- 473
Query: 191 KFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEE 250
+++ G+ H+ +++ + + +L + K +R++
Sbjct: 474 ----YSHIGH-----HLKNIEHPERMTL---FRMVFLDFRFLEQK---IRHDSTAWNASG 518
Query: 251 PYPDIIFNITLRRK 264
+ + + +
Sbjct: 519 SILNTLQQLKFYKP 532
Score = 29.4 bits (65), Expect = 3.8
Identities = 39/282 (13%), Positives = 70/282 (24%), Gaps = 111/282 (39%)
Query: 6 PPRTAAMHVLFPSLTFLVFSVIIAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMG 65
P + P S+I D N+ + N DKLT +
Sbjct: 319 PREVLTTN---P----RRLSIIAESIRDGLATW-----DNWKHV------NCDKLTTIIE 360
Query: 66 LKLSQLIEVNLKNQ-----IMTTNVWVNQNLKNQIMTTNVWVNQEWED----------YK 110
L+ L + + + + +++ +W + D Y
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHI----PTILLSL-IWFDVIKSDVMVVVNKLHKYS 415
Query: 111 L--KWSPEEYGGV--------------DTLH------------VPSEHIWLP--DIVLYN 140
L K E + LH S+ + P D Y+
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 141 -------NADGNYEVTIMTKAILHY---DGKV-----VWNPPA----------IYKSF-C 174
N + +T+ L + + K+ WN YK + C
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 175 EIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKI 216
+ D P Y+ + L + + I
Sbjct: 536 DND----P-------------KYERLVNAILDFLPKIEENLI 560
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 0.002
Identities = 76/533 (14%), Positives = 146/533 (27%), Gaps = 180/533 (33%)
Query: 98 TNVWVN--QEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAI 155
T + Q E + L P+E D + ++ K +
Sbjct: 24 TASFFIASQLQEQF-----------NKILPEPTEGFAADD-------EPTTPAELVGKFL 65
Query: 156 LHYDGKVVWNPPAIYKSFCEIDVEYF--PF----DVQTCVMKFGSWTYDGYTVDLKHILQ 209
+ V + + + + F + D+ L
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA------------AKLLQEND 113
Query: 210 GPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEK--FYSCCEEPYPDI--IF----NIT- 260
++ +++Y + + K P + + E + IF N
Sbjct: 114 TTLVKTKEL---IKNYITARI--MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 261 ----LRRKTLF--YTVNLIIPCVG--ISFLSVLVFYLPSDSGEKVSLC---ISILLSLTV 309
LR L+ Y VG I F + + L + + + ++IL
Sbjct: 169 YFEELR--DLYQTYH-----VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE---- 217
Query: 310 FFLLLAEIIPPTS------LTVPLLGKYLL-FTMILVTLSVV-VTIAVLNVNFRSPVTHV 361
+L P ++ PL+G ++ +VT ++ T L + H
Sbjct: 218 -WLENPSNTPDKDYLLSIPISCPLIG--VIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 362 MKPWVHKVFIEVLPKILFIQRPAKDNDDDLDKPPDGVLTEVFDVPDYVDYGGRYQTDFDI 421
+ V V I D+ + +T +F ++ G R +
Sbjct: 275 -QGLVTAVAIA-----------ETDSWESFFVSVRKAITVLF----FI--GVRCYEAYPN 316
Query: 422 PSLPPSRYDVSNTGSTVVPCYGDP-LPISNLEADDI------------------------ 456
SLPPS + S + VP P L ISNL + +
Sbjct: 317 TSLPPSILEDSLENNEGVPS---PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 457 --MF----SPTSM-----------CPPTQDGTDV-----SPTFDNQMILMPRPLTWRLPY 494
P S+ P D + + F N+ L P+ P+
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-L---PVA--SPF 427
Query: 495 ELPSKLARLASIHFCDLLTPIN--FLQEWEDYKLKWSPEEYGGVDTLHVPSEH 545
H LL P + ++ + ++ ++ + +P
Sbjct: 428 ------------H-SHLLVPASDLINKDLVKNNVSFNAKD------IQIPVYD 461
Score = 31.6 bits (71), Expect = 0.93
Identities = 29/211 (13%), Positives = 56/211 (26%), Gaps = 83/211 (39%)
Query: 33 DEAKRLYDD----LLSNYN-RLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNV-- 85
A+ +++ Y ++ V NN LT+ G + + I N I T V
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 86 ---------WVNQNLKN----------------Q--IMTTNVWVNQEWEDYKLKWSPE-- 116
+N++ + Q + ++ + L +
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATF 1759
Query: 117 ------EY------GGV----DTLHVPSEHIWLPDIV-----LYNNA-----DGNYEVTI 150
EY V + ++V A G +
Sbjct: 1760 AGHSLGEYAALASLADVMSIESLV----------EVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 151 MTKAILHYDGKVVWNPPAIYKSFCEIDVEYF 181
+ AI NP + SF + ++Y
Sbjct: 1810 I--AI---------NPGRVAASFSQEALQYV 1829
Score = 31.2 bits (70), Expect = 1.1
Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 33/152 (21%)
Query: 198 DGYTVD------LKHILQGPDSDKI----DIGIDLQDYYLSVEWDIMKVPAVRNEKFYSC 247
D + D L ++ P + I + G +++ Y ++ ++ + ++ EK +
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE 1709
Query: 248 CEEPYPDIIFNITLRRKTLFYTVNL--IIPCVGISFLSVL--VFYLPSDS-------GEK 296
E F + L T + + + L +P+D+ GE
Sbjct: 1710 INEHSTSYTFRSE--KGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY 1767
Query: 297 VSLC-----ISI--LLSLTVFF--LLLAEIIP 319
+L +SI L+ + VF+ + + +P
Sbjct: 1768 AALASLADVMSIESLVEV-VFYRGMTMQVAVP 1798
>2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; NMR {Homo sapiens}
Length = 191
Score = 32.8 bits (74), Expect = 0.17
Identities = 10/67 (14%), Positives = 24/67 (35%)
Query: 135 DIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGS 194
+L +G+ ++ + K + V N + S + + + V G
Sbjct: 46 PCLLKRLRNGHVGISFVPKETGEHLVHVKKNGQHVASSPIPVVISQSEIGDASRVRVSGQ 105
Query: 195 WTYDGYT 201
++G+T
Sbjct: 106 GLHEGHT 112
>3etv_A Protein transport protein TIP20,linker,protein transport protein
DSL1; TIP20P-DSL1P complex, endoplasmic reticulum,
ER-golgi transport; 1.94A {Saccharomyces cerevisiae}
PDB: 3etu_A
Length = 355
Score = 29.4 bits (65), Expect = 3.0
Identities = 22/110 (20%), Positives = 40/110 (36%), Gaps = 5/110 (4%)
Query: 20 TFLVFSVIIAQGNDEAKRLYDDLLSNYNRLIRPVG--NNSDKLTVKMGLKLSQLIEVNLK 77
+ F+ + G D+ YD + + P G +N + M SQ
Sbjct: 153 NSIQFTPTVEWGKDKVHIEYDTFMDFVAQQYFPKGSLDNQAWFILDMTSADSQEQVRAKL 212
Query: 78 NQIMTTNVWVNQ---NLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTL 124
N IM + +++ +KN I + ++ E E L +S G +
Sbjct: 213 NTIMKEYMNLSRIVSMIKNSIFISGKEISYENEKNILVFSKSSSHGQHCV 262
>3qaj_A Glutamine synthetase; AMP-PCP, ACP, ligase; HET: GLU ADP RGP CIT
AMP; 3.05A {Bacillus subtilis}
Length = 444
Score = 28.6 bits (65), Expect = 6.0
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 481 MILMPRPLTWR-LP-YELPSKLARLASIHFCDLLTP 514
M L P T+ P K+AR CD+ P
Sbjct: 68 MYLYPDLNTFVIFPWTAEKGKVARF----ICDIYNP 99
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus
musculus}
Length = 421
Score = 28.3 bits (64), Expect = 6.9
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 6/35 (17%)
Query: 481 MILMPRPLTWR-LPYELPSKLARLASIHFCDLLTP 514
++LMP T + A + CD
Sbjct: 65 IVLMPELSTAAVAAAA-AAATAAV----ICDGGAA 94
>1fft_C Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane
protein, oxidoreductase; HET: HEM HEO; 3.50A
{Escherichia coli} SCOP: f.25.1.1
Length = 204
Score = 27.6 bits (62), Expect = 9.0
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 308 TVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVL 350
T L+ PT + L L+ T +L+ S+ +A +
Sbjct: 46 TYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAI 88
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.141 0.444
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,115,945
Number of extensions: 570471
Number of successful extensions: 1074
Number of sequences better than 10.0: 1
Number of HSP's gapped: 983
Number of HSP's successfully gapped: 63
Length of query: 555
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 457
Effective length of database: 3,965,535
Effective search space: 1812249495
Effective search space used: 1812249495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.4 bits)