RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7429
(555 letters)
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great
pond snail (Lymnaea stagnalis) [TaxId: 6523]}
Length = 208
Score = 192 bits (489), Expect = 6e-59
Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 30/227 (13%)
Query: 41 DLLSNYNRLIRPV---GNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMT 97
D+L N + RP + V + LK ++EVN + W
Sbjct: 6 DILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQT-------- 57
Query: 98 TNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILH 157
W D L W+ D + VP +W+PD+ YN EV A +
Sbjct: 58 -------TWSDRTLAWNSSHSP--DQVSVPISSLWVPDLAAYNAIS-KPEVLTPQLARVV 107
Query: 158 YDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKID 217
DG+V++ P + C++ TC +K GSWT+ + + +
Sbjct: 108 SDGEVLYMPSIRQRFSCDVSGVDTESG-ATCRIKIGSWTHHSREISVDP--------TTE 158
Query: 218 IGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
D + + ++I+ V +N YSCC E Y D+ ++ R+K
Sbjct: 159 NSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 205
Score = 39.4 bits (91), Expect = 5e-04
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 510 DLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN 555
++ W D L W+ D + VP +W+PD+ YN
Sbjct: 48 EVDVVFWQQTTWSDRTLAWNSSHSP--DQVSVPISSLWVPDLAAYN 91
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 148 bits (375), Expect = 1e-41
Identities = 64/131 (48%), Positives = 87/131 (66%)
Query: 266 LFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTV 325
LFY +N I PCV ISFL+ L FYLP++SGEK+S IS+LL+ VF LL ++ +P T+L V
Sbjct: 2 LFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 326 PLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAK 385
PL+GKYL+F M LVT +V VLN +FR+P THV+ V ++F+E LP+IL + R +
Sbjct: 62 PLIGKYLMFIMSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADE 121
Query: 386 DNDDDLDKPPD 396
D
Sbjct: 122 SEQPDWQNDLK 132
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 250
Score = 145 bits (366), Expect = 1e-40
Identities = 70/125 (56%), Positives = 94/125 (75%)
Query: 266 LFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTV 325
LFY V IIPC+ IS L++LVFYLP D+GEK+SL IS LL++TVF LLLA+ +P TSL+V
Sbjct: 2 LFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETSLSV 61
Query: 326 PLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAK 385
P++ +YL+F MILV SV++++ VLN++ RSP TH M W+ ++FIE LP L+IQRP
Sbjct: 62 PIIIRYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVT 121
Query: 386 DNDDD 390
D
Sbjct: 122 TPSPD 126
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 227
Score = 142 bits (359), Expect = 8e-40
Identities = 67/141 (47%), Positives = 99/141 (70%)
Query: 266 LFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTV 325
L++ VN+IIPC+ SFL+ LVFYLP+DSGEK++L IS+LLSLTVF L++ E+IP TS V
Sbjct: 2 LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 326 PLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAK 385
PL+GKY+LFTMI V S+++T+ V+N + RSP TH M WV K+FI+ +P ++F +
Sbjct: 62 PLIGKYMLFTMIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKR 121
Query: 386 DNDDDLDKPPDGVLTEVFDVP 406
+ + + ++ D+
Sbjct: 122 ASKEKQENKIFADDIDISDIS 142
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 141 bits (357), Expect = 3e-39
Identities = 57/132 (43%), Positives = 86/132 (65%), Gaps = 1/132 (0%)
Query: 266 LFYTVNLIIPCVGISFLSVLVFYLPSDS-GEKVSLCISILLSLTVFFLLLAEIIPPTSLT 324
LFY +N+I PCV IS L VLV++LP+ + G+K +L IS+LL+ T+F L+A+ +P TSL
Sbjct: 2 LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLN 61
Query: 325 VPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPA 384
VPL+GKYL+F M + L V+ + VLNV+ R+P TH + + +F+ LPK L +Q
Sbjct: 62 VPLIGKYLIFVMFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQLEP 121
Query: 385 KDNDDDLDKPPD 396
+ + +P
Sbjct: 122 SEETPEKPQPRR 133
>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga
maritima [TaxId: 2336]}
Length = 261
Score = 26.6 bits (57), Expect = 7.1
Identities = 18/184 (9%), Positives = 45/184 (24%), Gaps = 6/184 (3%)
Query: 41 DLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNV 100
+ L N+ NNS KL + + ++T+ +++ + +
Sbjct: 33 ETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVDVPDDAVVTSGEITAEHMLKRFGRCRI 92
Query: 101 WVN------QEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKA 154
++ + +E Y E V + G + +
Sbjct: 93 FLLGTPQLKKVFEAYGHVIDEENPDFVVLGFDKTLTYERLKKACILLRKGKFYIATHPDI 152
Query: 155 ILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSD 214
V + +I + + + V + + D
Sbjct: 153 NCPSKEGPVPDAGSIMAAIEASTGRKPDLIAGKPNPLVVDVISEKFGVPKERMAMVGDRL 212
Query: 215 KIDI 218
D+
Sbjct: 213 YTDV 216
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.141 0.444
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,284,174
Number of extensions: 115519
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 16
Length of query: 555
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 465
Effective length of database: 1,171,896
Effective search space: 544931640
Effective search space used: 544931640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)