BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7433
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 28 SSESKNVCLWDSLLPQKKALVQAFVC--HDQGASSLVFAPQHQLLISAGKKGDICVIDLR 85
+S+S V LW+ +L ++ LV F HD +L +S GK + V DL
Sbjct: 111 ASDSGAVELWE-ILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS 169
Query: 86 QRVIRSRFNAHESPVKCLAIDP-HEEFFVTGAGDG-----DIKSPVKCLAID 131
Q+ + +NAH S V C+A P + F++ DG D + P ID
Sbjct: 170 QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID 221
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 21/149 (14%)
Query: 24 TAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVID 83
T +S+ K V LW+ + L+Q H + F+P Q + SA + + +
Sbjct: 194 TIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 249
Query: 84 LRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDGDIK----------------SPVKC 127
+++++ H S V +A P + + + D +K S V
Sbjct: 250 RNGQLLQT-LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG 308
Query: 128 LAIDPHEEFFVTGAGDGDIKVWSLSGNHL 156
+A P + + + D +K+W+ +G HL
Sbjct: 309 VAFSPDGQTIASASDDKTVKLWNRNGQHL 337
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 19/119 (15%)
Query: 90 RSRFNAHESPVKCLAIDPHEEFFVTGAGDGDIK----------------SPVKCLAIDPH 133
R+R AH S V+ +A P + + + D +K S V +A P
Sbjct: 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 68
Query: 134 EEFFVTGAGDGDIKVWSLSGNHLLYNFPGEHA--RSSFFKHIGQGVTQLHVDGGSRLFS 190
+ + + D +K+W+ +G LL G + R F GQ + D +L++
Sbjct: 69 GQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/217 (19%), Positives = 80/217 (36%), Gaps = 32/217 (14%)
Query: 11 SDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLL 70
SD + +L+ +A S+ K + +WD + K L + H F PQ L+
Sbjct: 72 SDVAWSSDSNLLVSA---SDDKTLKIWD--VSSGKCL-KTLKGHSNYVFCCNFNPQSNLI 125
Query: 71 ISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG----------- 119
+S + + D++ + AH PV + + V+ + DG
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 120 -------DIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPG-EHARSSFFK 171
D PV + P+ ++ + D D+K+W S L + G ++ + F
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 172 HIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
+ V GG + S D + + L ++ V
Sbjct: 246 N-------FSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 19/138 (13%)
Query: 29 SESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRV 88
S+ +++ +WD P L + V H + + F ++ ++SA I V +
Sbjct: 230 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCE 287
Query: 89 IRSRFNAHESPVKCLAIDPHEEFFVTGAGDGDIK-SPVKCLA----IDPHEEF------- 136
N H+ + CL + V+G+ D I+ ++C A ++ HEE
Sbjct: 288 FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD 345
Query: 137 ---FVTGAGDGDIKVWSL 151
V+GA DG IKVW L
Sbjct: 346 NKRIVSGAYDGKIKVWDL 363
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 28 SSESKNVCLWDSLLPQKKALVQAFVC---HDQGASSLVFAPQHQLLISAGKKGDICVIDL 84
+S+S V LW+ L + + L+ + C HD S++ +S K I V DL
Sbjct: 99 ASDSGAVELWE--LDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL 156
Query: 85 RQRVIRSRFNAHESPVKCLAIDPHEE-FFVTGAGDGDI 121
Q+V+ S + AH + V C+A PH++ F++ + D I
Sbjct: 157 AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRI 194
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 28/153 (18%)
Query: 28 SSESKNVCLWD-SLLPQKKALVQA---FVCHDQGASSLVFAPQHQLLI-SAGKKGDICVI 82
+S+ +CLWD S +P++ +V A F H + + H+ L S + +
Sbjct: 196 ASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIW 255
Query: 83 DLRQRVIRS---RFNAHESPVKCLAIDPHEEFFV-TGAGDGDI----------------- 121
D R +AH + V CL+ +P+ EF + TG+ D +
Sbjct: 256 DTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES 315
Query: 122 -KSPVKCLAIDPHEEFFVTGAG-DGDIKVWSLS 152
K + + PH E + +G D + VW LS
Sbjct: 316 HKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 15 FLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAG 74
FL +V ++G ++ LWD + F H SL AP +L +S
Sbjct: 151 FLDDNQIVTSSGDTT----CALWD---IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203
Query: 75 KKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDGDIK 122
+ D+R+ + R F HES + + P+ F TG+ D +
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 68/192 (35%), Gaps = 31/192 (16%)
Query: 28 SSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQR 87
+S+ + +WDS K V A + +AP + G + +L+ R
Sbjct: 73 ASQDGKLIIWDSYTTNK---VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 88 ----VIRSRFNAHESPVKCLA-IDPHEEFFVTGAGDG-----DIKS------------PV 125
+ H + C +D ++ VT +GD DI++ V
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 126 KCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPGEHARSS---FFKHIGQGVTQLHV 182
L++ P FV+GA D K+W + F G + + FF + G
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN-GNAFATGSD 246
Query: 183 DGGSRLFSCGAD 194
D RLF AD
Sbjct: 247 DATCRLFDLRAD 258
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 15 FLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAG 74
FL +V ++G ++ LWD + F H SL AP +L +S
Sbjct: 151 FLDDNQIVTSSGDTT----CALWD---IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203
Query: 75 KKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDGDIK 122
+ D+R+ + R F HES + + P+ F TG+ D +
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 68/192 (35%), Gaps = 31/192 (16%)
Query: 28 SSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQR 87
+S+ + +WDS K V A + +AP + G + +L+ R
Sbjct: 73 ASQDGKLIIWDSYTTNK---VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 88 ----VIRSRFNAHESPVKCLA-IDPHEEFFVTGAGDG-----DIKS------------PV 125
+ H + C +D ++ VT +GD DI++ V
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 126 KCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPGEHARSS---FFKHIGQGVTQLHV 182
L++ P FV+GA D K+W + F G + + FF + G
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN-GNAFATGSD 246
Query: 183 DGGSRLFSCGAD 194
D RLF AD
Sbjct: 247 DATCRLFDLRAD 258
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 79/217 (36%), Gaps = 32/217 (14%)
Query: 11 SDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLL 70
SD + +L+ +A S+ K + +WD + K L + H F PQ L+
Sbjct: 72 SDVAWSSDSNLLVSA---SDDKTLKIWD--VSSGKCL-KTLKGHSNYVFCCNFNPQSNLI 125
Query: 71 ISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG----------- 119
+S + + D++ + AH PV + + V+ + DG
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 120 -------DIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPG-EHARSSFFK 171
D PV + P+ ++ + D +K+W S L + G ++ + F
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 172 HIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
+ V GG + S D + + L ++ V
Sbjct: 246 N-------FSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 15 FLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAG 74
FL +V ++G ++ LWD + F H SL AP +L +S
Sbjct: 151 FLDDNQIVTSSGDTT----CALWD---IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203
Query: 75 KKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDGDIK 122
+ D+R+ + R F HES + + P+ F TG+ D +
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 68/192 (35%), Gaps = 31/192 (16%)
Query: 28 SSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQR 87
+S+ + +WDS K V A + +AP + G + +L+ R
Sbjct: 73 ASQDGKLIIWDSYTTNK---VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 88 ----VIRSRFNAHESPVKCLA-IDPHEEFFVTGAGDG-----DIKS------------PV 125
+ H + C +D ++ VT +GD DI++ V
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 126 KCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPGEHARSS---FFKHIGQGVTQLHV 182
L++ P FV+GA D K+W + F G + + FF + G
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN-GNAFATGSD 246
Query: 183 DGGSRLFSCGAD 194
D RLF AD
Sbjct: 247 DATCRLFDLRAD 258
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 15 FLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAG 74
FL +V ++G ++ LWD + F H SL AP +L +S
Sbjct: 162 FLDDNQIVTSSGDTT----CALWD---IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 214
Query: 75 KKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDGDIK 122
+ D+R+ + R F HES + + P+ F TG+ D +
Sbjct: 215 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 262
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 68/192 (35%), Gaps = 31/192 (16%)
Query: 28 SSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQR 87
+S+ + +WDS K V A + +AP + G + +L+ R
Sbjct: 84 ASQDGKLIIWDSYTTNK---VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 140
Query: 88 ----VIRSRFNAHESPVKCLA-IDPHEEFFVTGAGDG-----DIKS------------PV 125
+ H + C +D ++ VT +GD DI++ V
Sbjct: 141 EGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDV 198
Query: 126 KCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPGEHARSS---FFKHIGQGVTQLHV 182
L++ P FV+GA D K+W + F G + + FF + G
Sbjct: 199 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN-GNAFATGSD 257
Query: 183 DGGSRLFSCGAD 194
D RLF AD
Sbjct: 258 DATCRLFDLRAD 269
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 15 FLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAG 74
FL +V ++G ++ LWD + F H SL AP +L +S
Sbjct: 151 FLDDNQIVTSSGDTT----CALWD---IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203
Query: 75 KKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDGDIK 122
+ D+R+ + R F HES + + P+ F TG+ D +
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 68/192 (35%), Gaps = 31/192 (16%)
Query: 28 SSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQR 87
+S+ + +WDS K V A + +AP + G + +L+ R
Sbjct: 73 ASQDGKLIIWDSYTTNK---VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 88 ----VIRSRFNAHESPVKCLA-IDPHEEFFVTGAGDG-----DIKS------------PV 125
+ H + C +D ++ VT +GD DI++ V
Sbjct: 130 EGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDV 187
Query: 126 KCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPGEHARSS---FFKHIGQGVTQLHV 182
L++ P FV+GA D K+W + F G + + FF + G
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN-GNAFATGSD 246
Query: 183 DGGSRLFSCGAD 194
D RLF AD
Sbjct: 247 DATCRLFDLRAD 258
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 28/153 (18%)
Query: 28 SSESKNVCLWD-SLLPQKKALVQA---FVCHDQGASSLVFAPQHQLLI-SAGKKGDICVI 82
+S+ VCLWD + P++ +V A F H + + H+ L S + +
Sbjct: 198 ASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIW 257
Query: 83 DLRQRVIRSR---FNAHESPVKCLAIDPHEEFFV-TGAGDGDI----------------- 121
D R +AH + V CL+ +P+ EF + TG+ D +
Sbjct: 258 DTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFES 317
Query: 122 -KSPVKCLAIDPHEEFFVTGAG-DGDIKVWSLS 152
K + + PH E + +G D + VW LS
Sbjct: 318 HKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 51 FVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEE 110
F+ H+ ++L +P L+ SAGK G+I + +L + +A + V LA P+
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRY 250
Query: 111 FFVTGAGDGDIKSPVKCLAIDPH 133
+ G +K ++DP
Sbjct: 251 WLAAATATG-----IKVFSLDPQ 268
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 28/196 (14%)
Query: 29 SESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQ------LLISAGKKGDICVI 82
S K + +W K + + H+ S + P + +ISAG +
Sbjct: 126 SRDKTIKVW----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 83 DLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDGDI----------------KSPVK 126
+L Q I + F H S + L P + DG+I + V
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 127 CLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQLHVDGGS 186
LA P+ + G IKV+SL +L+ + E A S V+ G
Sbjct: 242 SLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSAAAE-PHAVSLAWSADGQ 299
Query: 187 RLFSCGADGSMKVRQL 202
LF+ D ++V Q+
Sbjct: 300 TLFAGYTDNVIRVWQV 315
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 31/183 (16%)
Query: 48 VQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDP 107
V++F H +SA + + D+ RF H+S V + ID
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 108 HEEFFVTGAGDGDIKSPV---KCLA-------------IDPHEE------FFVTGAGDGD 145
++G+ D IK +CLA + P+E+ ++ D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 146 IKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDR 205
+K W+L+ + +F G ++ + T G+ + S G DG + + L +
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNIN---------TLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 206 DAV 208
A+
Sbjct: 229 KAM 231
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 51 FVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEE 110
F+ H+ ++L +P L+ SAGK G+I + +L + +A + V LA P+
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRY 250
Query: 111 FFVTGAGDGDIKSPVKCLAIDPH 133
+ G +K ++DP
Sbjct: 251 WLAAATATG-----IKVFSLDPQ 268
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 28/196 (14%)
Query: 29 SESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQ------LLISAGKKGDICVI 82
S K + +W K + + H+ S + P + +ISAG +
Sbjct: 126 SRDKTIKVW----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 83 DLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDGDI----------------KSPVK 126
+L Q I + F H S + L P + DG+I + V
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 127 CLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQLHVDGGS 186
LA P+ + G IKV+SL +L+ + E A S V+ G
Sbjct: 242 SLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAE-PHAVSLAWSADGQ 299
Query: 187 RLFSCGADGSMKVRQL 202
LF+ D ++V Q+
Sbjct: 300 TLFAGYTDNVIRVWQV 315
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 31/183 (16%)
Query: 48 VQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDP 107
V++F H +SA + + D+ RF H+S V + ID
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 108 HEEFFVTGAGDGDIKSPV---KCLA-------------IDPHEE------FFVTGAGDGD 145
++G+ D IK +CLA + P+E+ ++ D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 146 IKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDR 205
+K W+L+ + +F G ++ + T G+ + S G DG + + L +
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNIN---------TLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 206 DAV 208
A+
Sbjct: 229 KAM 231
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 51 FVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEE 110
F+ H+ ++L +P L+ SAGK G+I + +L + +A + V LA P+
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRY 250
Query: 111 FFVTGAGDGDIKSPVKCLAIDPH 133
+ G +K ++DP
Sbjct: 251 WLAAATATG-----IKVFSLDPQ 268
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 28/196 (14%)
Query: 29 SESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQ------LLISAGKKGDICVI 82
S K + +W K + + H+ S + P + +ISAG +
Sbjct: 126 SRDKTIKVW----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 83 DLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDGDI----------------KSPVK 126
+L Q I + F H S + L P + DG+I + V
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 127 CLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQLHVDGGS 186
LA P+ + G IKV+SL +L+ + E A S V+ G
Sbjct: 242 SLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAE-PHAVSLAWSADGQ 299
Query: 187 RLFSCGADGSMKVRQL 202
LF+ D ++V Q+
Sbjct: 300 TLFAGYTDNVIRVWQV 315
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 31/183 (16%)
Query: 48 VQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDP 107
V++F H +SA + + D+ RF H+S V + ID
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 108 HEEFFVTGAGDGDIKSPV---KCLA-------------IDPHEE------FFVTGAGDGD 145
++G+ D IK +CLA + P+E+ ++ D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 146 IKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDR 205
+K W+L+ + +F G ++ + T G+ + S G DG + + L +
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNIN---------TLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 206 DAV 208
A+
Sbjct: 229 KAM 231
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 51 FVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEE 110
F+ H+ ++L +P L+ SAGK G+I + +L + +A + V LA P+
Sbjct: 186 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRY 244
Query: 111 FFVTGAGDGDIKSPVKCLAIDPH 133
+ G +K ++DP
Sbjct: 245 WLAAATATG-----IKVFSLDPQ 262
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 28/196 (14%)
Query: 29 SESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQ------LLISAGKKGDICVI 82
S K + +W K + + H+ S + P + +ISAG +
Sbjct: 120 SRDKTIKVW----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 175
Query: 83 DLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDGDI----------------KSPVK 126
+L Q I + F H S + L P + DG+I + V
Sbjct: 176 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 235
Query: 127 CLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQLHVDGGS 186
LA P+ + G IKV+SL +L+ + E A S V+ G
Sbjct: 236 SLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAE-PHAVSLAWSADGQ 293
Query: 187 RLFSCGADGSMKVRQL 202
LF+ D ++V Q+
Sbjct: 294 TLFAGYTDNVIRVWQV 309
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 31/183 (16%)
Query: 48 VQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDP 107
V++F H +SA + + D+ RF H+S V + ID
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 111
Query: 108 HEEFFVTGAGDGDIKSPV---KCLA-------------IDPHEE------FFVTGAGDGD 145
++G+ D IK +CLA + P+E+ ++ D
Sbjct: 112 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 171
Query: 146 IKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDR 205
+K W+L+ + +F G ++ + T G+ + S G DG + + L +
Sbjct: 172 VKAWNLNQFQIEADFIGHNSNIN---------TLTASPDGTLIASAGKDGEIMLWNLAAK 222
Query: 206 DAV 208
A+
Sbjct: 223 KAM 225
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 51 FVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEE 110
F+ H+ ++L +P L+ SAGK G+I + +L + +A + V LA P+
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRY 250
Query: 111 FFVTGAGDGDIKSPVKCLAIDPH 133
+ G +K ++DP
Sbjct: 251 WLAAATATG-----IKVFSLDPQ 268
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 68/195 (34%), Gaps = 28/195 (14%)
Query: 29 SESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQ------LLISAGKKGDICVI 82
S K + +W K + + H+ S + P + +ISAG +
Sbjct: 126 SRDKTIKVW----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 83 DLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDGDI----------------KSPVK 126
+L Q I + F H S + L P + DG+I + V
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVF 241
Query: 127 CLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQLHVDGGS 186
LA P+ + G IKV+SL +L+ + E A S V+ G
Sbjct: 242 SLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAE-PHAVSLAWSADGQ 299
Query: 187 RLFSCGADGSMKVRQ 201
LF+ D ++V Q
Sbjct: 300 TLFAGYTDNVIRVWQ 314
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 31/183 (16%)
Query: 48 VQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDP 107
V++F H +SA + + D+ RF H+S V + ID
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 108 HEEFFVTGAGDGDIKSPV---KCLA-------------IDPHEE------FFVTGAGDGD 145
++G+ D IK +CLA + P+E+ ++ D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 146 IKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDR 205
+K W+L+ + +F G ++ + T G+ + S G DG + + L +
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNIN---------TLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 206 DAV 208
A+
Sbjct: 229 KAM 231
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 28/153 (18%)
Query: 28 SSESKNVCLWD-SLLPQKKALVQA---FVCHDQGASSLVFAPQHQLLI-SAGKKGDICVI 82
+S+ VCLWD + P++ +V A F H + + H+ L S + +
Sbjct: 198 ASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIW 257
Query: 83 DLRQRVIRSR---FNAHESPVKCLAIDPHEEFFV-TGAGDGDI----------------- 121
D R +AH + V CL+ +P+ EF + TG+ D +
Sbjct: 258 DTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFES 317
Query: 122 -KSPVKCLAIDPHEEFFVTGAG-DGDIKVWSLS 152
K + + PH E + +G D + VW LS
Sbjct: 318 HKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 28/153 (18%)
Query: 28 SSESKNVCLWD-SLLPQKKALVQA---FVCHDQGASSLVFAPQHQLLI-SAGKKGDICVI 82
+S+ +CLWD + P++ ++ A F H + + H+ L S + +
Sbjct: 204 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 263
Query: 83 DLRQRVIRS---RFNAHESPVKCLAIDPHEEFFV-TGAGDGDI----------------- 121
D R +AH + V CL+ +P+ EF + TG+ D +
Sbjct: 264 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES 323
Query: 122 -KSPVKCLAIDPHEEFFVTGAG-DGDIKVWSLS 152
K + + PH E + +G D + VW LS
Sbjct: 324 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 51 FVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEE 110
F+ H+ ++L +P L+ SAGK G+I + +L + +A + V LA P+
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDE-VFSLAFSPNRY 250
Query: 111 FFVTGAGDGDIKSPVKCLAIDPH 133
+ G +K ++DP
Sbjct: 251 WLAAATATG-----IKVFSLDPQ 268
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 28/196 (14%)
Query: 29 SESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQ------LLISAGKKGDICVI 82
S K + +W K + + H+ S + P + +ISAG +
Sbjct: 126 SRDKTIKVW----TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181
Query: 83 DLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDGDI----------------KSPVK 126
+L Q I + F H S + L P + DG+I + V
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVF 241
Query: 127 CLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQLHVDGGS 186
LA P+ + G IKV+SL +L+ + E A S V+ G
Sbjct: 242 SLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAE-PHAVSLAWSADGQ 299
Query: 187 RLFSCGADGSMKVRQL 202
LF+ D ++V Q+
Sbjct: 300 TLFAGYTDNVIRVWQV 315
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 66/182 (36%), Gaps = 31/182 (17%)
Query: 48 VQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDP 107
V++F H +SA + + D+ RF H+S V + ID
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDK 117
Query: 108 HEEFFVTGAGDGDIKSPV---KCLA-------------IDPHEE------FFVTGAGDGD 145
++G+ D IK +CLA + P+E+ ++ D
Sbjct: 118 KASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKX 177
Query: 146 IKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDR 205
+K W+L+ + +F G ++ + T G+ + S G DG + + L +
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNIN---------TLTASPDGTLIASAGKDGEIXLWNLAAK 228
Query: 206 DA 207
A
Sbjct: 229 KA 230
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 28/153 (18%)
Query: 28 SSESKNVCLWD-SLLPQKKALVQA---FVCHDQGASSLVFAPQHQLLI-SAGKKGDICVI 82
+S+ +CLWD + P++ ++ A F H + + H+ L S + +
Sbjct: 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 259
Query: 83 DLRQRVIRS---RFNAHESPVKCLAIDPHEEFFV-TGAGDGDI----------------- 121
D R +AH + V CL+ +P+ EF + TG+ D +
Sbjct: 260 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES 319
Query: 122 -KSPVKCLAIDPHEEFFVTGAG-DGDIKVWSLS 152
K + + PH E + +G D + VW LS
Sbjct: 320 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 28/153 (18%)
Query: 28 SSESKNVCLWD-SLLPQKKALVQA---FVCHDQGASSLVFAPQHQLLI-SAGKKGDICVI 82
+S+ +CLWD + P++ ++ A F H + + H+ L S + +
Sbjct: 202 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIW 261
Query: 83 DLRQRVIRS---RFNAHESPVKCLAIDPHEEFFV-TGAGDGDI----------------- 121
D R +AH + V CL+ +P+ EF + TG+ D +
Sbjct: 262 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES 321
Query: 122 -KSPVKCLAIDPHEEFFVTGAG-DGDIKVWSLS 152
K + + PH E + +G D + VW LS
Sbjct: 322 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 32/217 (14%)
Query: 11 SDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLL 70
SD + +L+ +A S+ K + +WD + K L + H F PQ L+
Sbjct: 86 SDVAWSSDSNLLVSA---SDDKTLKIWD--VSSGKCL-KTLKGHSNYVFCCNFNPQSNLI 139
Query: 71 ISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG----------- 119
+S + + D++ AH PV + + V+ + DG
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 120 -------DIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPG-EHARSSFFK 171
D PV + P+ ++ + D +K+W S L + G ++ + F
Sbjct: 200 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF- 258
Query: 172 HIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
V GG + S D + + L ++ V
Sbjct: 259 ------ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 289
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 19/173 (10%)
Query: 46 ALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAI 105
AL H + SS+ F+P + L S+ I + + H+ + +A
Sbjct: 31 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 90
Query: 106 DPHEEFFVTGAGDGDIK----SPVKCLA-------------IDPHEEFFVTGAGDGDIKV 148
V+ + D +K S KCL +P V+G+ D +++
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 149 WSLSGNHLLYNFPG--EHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKV 199
W + L P + + F G + DG R++ + +K
Sbjct: 151 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 203
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 32/217 (14%)
Query: 11 SDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLL 70
SD + +L+ +A S+ K + +WD + K L + H F PQ L+
Sbjct: 70 SDVAWSSDSNLLVSA---SDDKTLKIWD--VSSGKCL-KTLKGHSNYVFCCNFNPQSNLI 123
Query: 71 ISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG----------- 119
+S + + D++ AH PV + + V+ + DG
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 120 -------DIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPG-EHARSSFFK 171
D PV + P+ ++ + D +K+W S L + G ++ + F
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF- 242
Query: 172 HIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
V GG + S D + + L ++ V
Sbjct: 243 ------ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 273
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 19/173 (10%)
Query: 46 ALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAI 105
AL H + SS+ F+P + L S+ I + + H+ + +A
Sbjct: 15 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 74
Query: 106 DPHEEFFVTGAGDGDIK----SPVKCLA-------------IDPHEEFFVTGAGDGDIKV 148
V+ + D +K S KCL +P V+G+ D +++
Sbjct: 75 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 134
Query: 149 WSLSGNHLLYNFPG--EHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKV 199
W + L P + + F G + DG R++ + +K
Sbjct: 135 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 187
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 60 SLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG 119
S+ ++P + L S G I + D+ + H P++ L P + VT + DG
Sbjct: 169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 228
Query: 120 DIK 122
IK
Sbjct: 229 YIK 231
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 47 LVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAID 106
L+ H SL F+P QLL++A G I + D++ + + H S V +A
Sbjct: 198 LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC 257
Query: 107 PHEEFF 112
P + F
Sbjct: 258 PDDTHF 263
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 32/217 (14%)
Query: 11 SDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLL 70
SD + +L+ +A S+ K + +WD + K L + H F PQ L+
Sbjct: 72 SDVAWSSDSNLLVSA---SDDKTLKIWD--VSSGKCL-KTLKGHSNYVFCCNFNPQSNLI 125
Query: 71 ISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG----------- 119
+S + + D++ AH PV + + V+ + DG
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 120 -------DIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPG-EHARSSFFK 171
D PV + P+ ++ + D +K+W S L + G ++ + F
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF- 244
Query: 172 HIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
V GG + S D + + L ++ V
Sbjct: 245 ------ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 19/173 (10%)
Query: 46 ALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAI 105
AL H + SS+ F+P + L S+ I + + H+ + +A
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 106 DPHEEFFVTGAGDGDIK----SPVKCLA-------------IDPHEEFFVTGAGDGDIKV 148
V+ + D +K S KCL +P V+G+ D +++
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 149 WSLSGNHLLYNFPG--EHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKV 199
W + L P + + F G + DG R++ + +K
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 32/217 (14%)
Query: 11 SDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLL 70
SD + +L+ +A S+ K + +WD + K L + H F PQ L+
Sbjct: 72 SDVAWSSDSNLLVSA---SDDKTLKIWD--VSSGKCL-KTLKGHSNYVFCCNFNPQSNLI 125
Query: 71 ISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG----------- 119
+S + + D++ AH PV + + V+ + DG
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 120 -------DIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPG-EHARSSFFK 171
D PV + P+ ++ + D +K+W S L + G ++ + F
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF- 244
Query: 172 HIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
V GG + S D + + L ++ V
Sbjct: 245 ------ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Score = 33.5 bits (75), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 19/173 (10%)
Query: 46 ALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAI 105
AL H + SS+ F+P + L S+ I + + H+ + +A
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 106 DPHEEFFVTGAGDGDIK----SPVKCLA-------------IDPHEEFFVTGAGDGDIKV 148
V+ + D +K S KCL +P V+G+ D +++
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 149 WSLSGNHLLYNFPG--EHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKV 199
W + L P + + F G + DG R++ + +K
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 32/217 (14%)
Query: 11 SDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLL 70
SD + +L+ +A S+ K + +WD + K L + H F PQ L+
Sbjct: 69 SDVAWSSDSNLLVSA---SDDKTLKIWD--VSSGKCL-KTLKGHSNYVFCCNFNPQSNLI 122
Query: 71 ISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG----------- 119
+S + + D++ AH PV + + V+ + DG
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 120 -------DIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPG-EHARSSFFK 171
D PV + P+ ++ + D +K+W S L + G ++ + F
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF- 241
Query: 172 HIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
V GG + S D + + L ++ V
Sbjct: 242 ------ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 19/173 (10%)
Query: 46 ALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAI 105
AL H + SS+ F+P + L S+ I + + H+ + +A
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 106 DPHEEFFVTGAGDGDIK----SPVKCLA-------------IDPHEEFFVTGAGDGDIKV 148
V+ + D +K S KCL +P V+G+ D +++
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 149 WSLSGNHLLYNFPG--EHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKV 199
W + L P + + F G + DG R++ + +K
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 32/217 (14%)
Query: 11 SDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLL 70
SD + +L+ +A S+ K + +WD + K L + H F PQ L+
Sbjct: 65 SDVAWSSDSNLLVSA---SDDKTLKIWD--VSSGKCL-KTLKGHSNYVFCCNFNPQSNLI 118
Query: 71 ISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG----------- 119
+S + + D++ AH PV + + V+ + DG
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 120 -------DIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPG-EHARSSFFK 171
D PV + P+ ++ + D +K+W S L + G ++ + F
Sbjct: 179 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF- 237
Query: 172 HIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
V GG + S D + + L ++ V
Sbjct: 238 ------ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 268
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 19/173 (10%)
Query: 46 ALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAI 105
AL H + SS+ F+P + L S+ I + + H+ + +A
Sbjct: 10 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 69
Query: 106 DPHEEFFVTGAGDGDIK----SPVKCLA-------------IDPHEEFFVTGAGDGDIKV 148
V+ + D +K S KCL +P V+G+ D +++
Sbjct: 70 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 149 WSLSGNHLLYNFPG--EHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKV 199
W + L P + + F G + DG R++ + +K
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 182
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 32/217 (14%)
Query: 11 SDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLL 70
SD + +L+ +A S+ K + +WD + K L + H F PQ L+
Sbjct: 68 SDVAWSSDSNLLVSA---SDDKTLKIWD--VSSGKCL-KTLKGHSNYVFCCNFNPQSNLI 121
Query: 71 ISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG----------- 119
+S + + D++ AH PV + + V+ + DG
Sbjct: 122 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 181
Query: 120 -------DIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPG-EHARSSFFK 171
D PV + P+ ++ + D +K+W S L + G ++ + F
Sbjct: 182 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF- 240
Query: 172 HIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
V GG + S D + + L ++ V
Sbjct: 241 ------ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 271
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 19/173 (10%)
Query: 46 ALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAI 105
AL H + SS+ F+P + L S+ I + + H+ + +A
Sbjct: 13 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 72
Query: 106 DPHEEFFVTGAGDGDIK----SPVKCLA-------------IDPHEEFFVTGAGDGDIKV 148
V+ + D +K S KCL +P V+G+ D +++
Sbjct: 73 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 149 WSLSGNHLLYNFPG--EHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKV 199
W + L P + + F G + DG R++ + +K
Sbjct: 133 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 185
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 32/217 (14%)
Query: 11 SDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLL 70
SD + +L+ +A S+ K + +WD + K L + H F PQ L+
Sbjct: 72 SDVAWSSDSNLLVSA---SDDKTLKIWD--VSSGKCL-KTLKGHSNYVFCCNFNPQSNLI 125
Query: 71 ISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG----------- 119
+S + + D++ AH PV + + V+ + DG
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 120 -------DIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPG-EHARSSFFK 171
D PV + P+ ++ + D +K+W S L + G ++ + F
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF- 244
Query: 172 HIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
V GG + S D + + L ++ V
Sbjct: 245 ------ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 19/173 (10%)
Query: 46 ALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAI 105
AL H + SS+ F+P + L ++ I + + H+ + +A
Sbjct: 17 ALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 106 DPHEEFFVTGAGDGDIK----SPVKCLA-------------IDPHEEFFVTGAGDGDIKV 148
V+ + D +K S KCL +P V+G+ D +++
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 149 WSLSGNHLLYNFPG--EHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKV 199
W + L P + + F G + DG R++ + +K
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 32/217 (14%)
Query: 11 SDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLL 70
SD + +L+ +A S+ K + +WD + K L + H F PQ L+
Sbjct: 69 SDVAWSSDSNLLVSA---SDDKTLKIWD--VSSGKCL-KTLKGHSNYVFCCNFNPQSNLI 122
Query: 71 ISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG----------- 119
+S + + D++ AH PV + + V+ + DG
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 120 -------DIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPG-EHARSSFFK 171
D PV + P+ ++ + D +K+W S L + G ++ + F
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF- 241
Query: 172 HIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
V GG + S D + + L ++ V
Sbjct: 242 ------ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 19/173 (10%)
Query: 46 ALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAI 105
AL H + SS+ F+P + L S+ I + + H+ + +A
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 106 DPHEEFFVTGAGDGDIK----SPVKCLA-------------IDPHEEFFVTGAGDGDIKV 148
V+ + D +K S KCL +P V+G+ D +++
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 149 WSLSGNHLLYNFPG--EHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKV 199
W + L P + + F G + DG R++ + +K
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 32/217 (14%)
Query: 11 SDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLL 70
SD + +L+ +A S+ K + +WD + K L + H F PQ L+
Sbjct: 75 SDVAWSSDSNLLVSA---SDDKTLKIWD--VSSGKCL-KTLKGHSNYVFCCNFNPQSNLI 128
Query: 71 ISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG----------- 119
+S + + D++ AH PV + + V+ + DG
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 120 -------DIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPG-EHARSSFFK 171
D PV + P+ ++ + D +K+W S L + G ++ + F
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF- 247
Query: 172 HIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
V GG + S D + + L ++ V
Sbjct: 248 ------ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Score = 33.9 bits (76), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 19/173 (10%)
Query: 46 ALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAI 105
AL H + SS+ F+P + L S+ I + + H+ + +A
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 106 DPHEEFFVTGAGDGDIK----SPVKCLA-------------IDPHEEFFVTGAGDGDIKV 148
V+ + D +K S KCL +P V+G+ D +++
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 149 WSLSGNHLLYNFPG--EHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKV 199
W + L P + + F G + DG R++ + +K
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 32/217 (14%)
Query: 11 SDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLL 70
SD + +L+ +A S+ K + +WD + K L + H F PQ L+
Sbjct: 75 SDVAWSSDSNLLVSA---SDDKTLKIWD--VSSGKCL-KTLKGHSNYVFCCNFNPQSNLI 128
Query: 71 ISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG----------- 119
+S + + D++ AH PV + + V+ + DG
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 120 -------DIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPG-EHARSSFFK 171
D PV + P+ ++ + D +K+W S L + G ++ + F
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF- 247
Query: 172 HIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
V GG + S D + + L ++ V
Sbjct: 248 ------ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 19/173 (10%)
Query: 46 ALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAI 105
AL H + SS+ F+P + L S+ I + + H+ + +A
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 106 DPHEEFFVTGAGDGDIK----SPVKCLA-------------IDPHEEFFVTGAGDGDIKV 148
V+ + D +K S KCL +P V+G+ D +++
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 149 WSLSGNHLLYNFPG--EHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKV 199
W + L P + + F G + DG R++ + +K
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 32/217 (14%)
Query: 11 SDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLL 70
SD + +L+ +A S+ K + +WD + K L + H F PQ L+
Sbjct: 74 SDVAWSSDSNLLVSA---SDDKTLKIWD--VSSGKCL-KTLKGHSNYVFCCNFNPQSNLI 127
Query: 71 ISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG----------- 119
+S + + D++ AH PV + + V+ + DG
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 120 -------DIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPG-EHARSSFFK 171
D PV + P+ ++ + D +K+W S L + G ++ + F
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF- 246
Query: 172 HIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
V GG + S D + + L ++ V
Sbjct: 247 ------ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 277
Score = 33.9 bits (76), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 19/173 (10%)
Query: 46 ALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAI 105
AL H + SS+ F+P + L S+ I + + H+ + +A
Sbjct: 19 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 78
Query: 106 DPHEEFFVTGAGDGDIK----SPVKCLA-------------IDPHEEFFVTGAGDGDIKV 148
V+ + D +K S KCL +P V+G+ D +++
Sbjct: 79 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 138
Query: 149 WSLSGNHLLYNFPG--EHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKV 199
W + L P + + F G + DG R++ + +K
Sbjct: 139 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 191
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 32/217 (14%)
Query: 11 SDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLL 70
SD + +L+ +A S+ K + +WD + K L + H F PQ L+
Sbjct: 75 SDVAWSSDSNLLVSA---SDDKTLKIWD--VSSGKCL-KTLKGHSNYVFCCNFNPQSNLI 128
Query: 71 ISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG----------- 119
+S + + D++ AH PV + + V+ + DG
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 120 -------DIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPG-EHARSSFFK 171
D PV + P+ ++ + D +K+W S L + G ++ + F
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF- 247
Query: 172 HIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
V GG + S D + + L ++ V
Sbjct: 248 ------ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 19/173 (10%)
Query: 46 ALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAI 105
AL H + SS+ F+P + L S+ I + + H+ + +A
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 106 DPHEEFFVTGAGDGDIK----SPVKCLA-------------IDPHEEFFVTGAGDGDIKV 148
V+ + D +K S KCL +P V+G+ D +++
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 149 WSLSGNHLLYNFPG--EHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKV 199
W + L P + + F G + DG R++ + +K
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 34/165 (20%)
Query: 29 SESKNVCLWDSLLPQKKALV----QAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDL 84
S K V +W ++ +A H+ S L + ++ IS+ + + DL
Sbjct: 46 SRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDL 105
Query: 85 RQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDGDIK---------------------- 122
R RF H+S V +A P ++ + +IK
Sbjct: 106 RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWV 165
Query: 123 -----SPVKCLA--IDPHEEFFVTGAGDGDIKVWSLSGNHLLYNF 160
SP+ A + P +F + DG +KVW+ + + Y F
Sbjct: 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTF 209
Score = 33.9 bits (76), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 22/106 (20%)
Query: 63 FAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG--- 119
FAP S G G + V + + IR F AHES V L+I P+ ++ TG D
Sbjct: 183 FAP---YFASVGWDGRLKVWNTNFQ-IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL 238
Query: 120 --------------DIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSL 151
D S + +A +P ++ G G +K+++L
Sbjct: 239 IWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQG-VKIFNL 283
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 78/217 (35%), Gaps = 32/217 (14%)
Query: 11 SDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLL 70
SD + +L+ +A S+ K + +WD + K L + H F PQ L+
Sbjct: 91 SDVAWSSDSNLLVSA---SDDKTLKIWD--VSSGKCL-KTLKGHSNYVFCCNFNPQSNLI 144
Query: 71 ISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG----------- 119
+S + + D++ AH PV + + V+ + DG
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 120 -------DIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPG-EHARSSFFK 171
D PV + P+ ++ + D +K+W S L + G ++ + F
Sbjct: 205 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 264
Query: 172 HIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
+ V GG + S D + + L ++ V
Sbjct: 265 N-------FSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 19/173 (10%)
Query: 46 ALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAI 105
AL H + SS+ F+P + L S+ I + + H+ + +A
Sbjct: 36 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 95
Query: 106 DPHEEFFVTGAGDGDIK----SPVKCLAI-------------DPHEEFFVTGAGDGDIKV 148
V+ + D +K S KCL +P V+G+ D +++
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 149 WSLSGNHLLYNFPG--EHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKV 199
W + L P + + F G + DG R++ + +K
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 78/217 (35%), Gaps = 32/217 (14%)
Query: 11 SDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLL 70
SD + +L+ +A S+ K + +WD + K L + H F PQ L+
Sbjct: 93 SDVAWSSDSNLLVSA---SDDKTLKIWD--VSSGKCL-KTLKGHSNYVFCCNFNPQSNLI 146
Query: 71 ISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG----------- 119
+S + + D++ AH PV + + V+ + DG
Sbjct: 147 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 120 -------DIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPG-EHARSSFFK 171
D PV + P+ ++ + D +K+W S L + G ++ + F
Sbjct: 207 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 266
Query: 172 HIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
+ V GG + S D + + L ++ V
Sbjct: 267 N-------FSVTGGKWIVSGSEDNLVYIWNLQTKEIV 296
Score = 33.5 bits (75), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 59/173 (34%), Gaps = 19/173 (10%)
Query: 46 ALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAI 105
AL H + SS+ F+P + L S+ I + + H+ + +A
Sbjct: 38 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 97
Query: 106 DPHEEFFVTGAGDGDIK----SPVKCLAI-------------DPHEEFFVTGAGDGDIKV 148
V+ + D +K S KCL +P V+G+ D +++
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 149 WSLSGNHLLYNFPG--EHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKV 199
W + L P + + F G + DG R++ + +K
Sbjct: 158 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 210
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 5/117 (4%)
Query: 7 NKITSDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQ 66
N I S + C+L+ E+ + +WD P + + +L +P
Sbjct: 98 NYIRSCKLLPDGCTLIV----GGEASTLSIWDLAAPTPRIKAE-LTSSAPACYALAISPD 152
Query: 67 HQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDGDIKS 123
++ S G+I V DL + + +F H C+ I TG D ++S
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209
Score = 33.5 bits (75), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 59/172 (34%), Gaps = 36/172 (20%)
Query: 34 VCLWDSLLPQKKALVQAFVC--HDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRS 91
V +WD P K+ V C D S P LI G+ + + DL R
Sbjct: 74 VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRI 133
Query: 92 RFNAHESPVKCLAIDPHEEFFVTGAGDGDIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSL 151
+ S C A LAI P + + DG+I VW L
Sbjct: 134 KAELTSSAPACYA-----------------------LAISPDSKVCFSCCSDGNIAVWDL 170
Query: 152 SGNHLLYNFPGEHARSSFFKHIGQGVTQLHV-DGGSRLFSCGADGSMKVRQL 202
L+ F G G + + + + G++L++ G D +++ L
Sbjct: 171 HNQTLVRQFQGHT----------DGASCIDISNDGTKLWTGGLDNTVRSWDL 212
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 26/157 (16%)
Query: 60 SLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG 119
S+ F+P + L + + I + D+ R I HE + L P + V+G+GD
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 120 ----------------DIKSPVKCLAIDPHE-EFFVTGAGDGDIKVWSLSGNHLLYNFPG 162
I+ V +A+ P + ++ G+ D ++VW L+
Sbjct: 188 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247
Query: 163 EHAR---------SSFFKHIGQGVTQLHVDGGSRLFS 190
E+ S F GQ V +D +L++
Sbjct: 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 29 SESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRV 88
++ K + ++DS+ KK L+Q HD G +L +A +L+S + V D+++
Sbjct: 139 ADDKXIRVYDSI--NKKFLLQ-LSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGC 194
Query: 89 IRSRFNAHESPVKCLAIDPHE--EFFVTGAGDGDI---KSPVKCLAIDPHEE 135
F H S V+CL I ++ ++ VTG+ D + K P + D EE
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 29 SESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRV 88
++ K + ++DS+ KK L+Q HD G +L +A +L+S + V D+++
Sbjct: 139 ADDKMIRVYDSI--NKKFLLQ-LSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDIKKGC 194
Query: 89 IRSRFNAHESPVKCLAIDPHE--EFFVTGAGDGDI---KSPVKCLAIDPHEE 135
F H S V+CL I ++ ++ VTG+ D + K P + D EE
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 246
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 21/143 (14%)
Query: 37 WDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAH 96
W P+K AL H + ++F P +++SA + I V D H
Sbjct: 94 WIPRPPEKYALSG----HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH 149
Query: 97 ESPVKCLAIDPHEEFFVTGAGDGDIK-----------------SPVKCLAIDPHEEFFVT 139
V+ ++ D + + + D IK V ++I P+ + V+
Sbjct: 150 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 209
Query: 140 GAGDGDIKVWSLSGNHLLYNFPG 162
+ D IK+W + + + F G
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTG 232
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Query: 29 SESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRV 88
S K + +WD + V HD ++F + ++S + V D + +
Sbjct: 315 SRDKTIKMWDV---STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 371
Query: 89 IRSRFNAHESPVKCLAIDPHEEFFVTGAGDGDIK 122
NAHE V L + VTG+ D +K
Sbjct: 372 CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 405
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 33.9 bits (76), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 57/154 (37%), Gaps = 15/154 (9%)
Query: 1 MTYQCHNKITSDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASS 60
T + H + S +L+AT S K+V +W+ + V H Q
Sbjct: 99 TTLEGHENEVKSVAWAPSGNLLATC---SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKH 155
Query: 61 LVFAPQHQLLISAGKKGDICVIDLRQ--RVIRSRFNAHESPVKCLAIDPHEEFFVTGAGD 118
+V+ P +LL SA + + + V + HES V LA DP + + + D
Sbjct: 156 VVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD 215
Query: 119 GDIK----------SPVKCLAIDPHEEFFVTGAG 142
++ V C DP + T +G
Sbjct: 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249
Score = 33.5 bits (75), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 24/126 (19%)
Query: 54 HDQGASSLVFAPQHQLLISAGKKGDICVIDLRQR---VIRSRFNAHESPVKCLAIDPHEE 110
H+ S+ +AP LL + + + V ++ + S N+H VK + P +E
Sbjct: 104 HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163
Query: 111 FFVTGAGDGDIK-------------------SPVKCLAIDPHEEFFVTGAGDGDIKVWS- 150
+ + D +K S V LA DP + + + D +++W
Sbjct: 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223
Query: 151 -LSGNH 155
L GN
Sbjct: 224 YLPGNE 229
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 33.1 bits (74), Expect = 0.12, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 19/78 (24%)
Query: 93 FNAHESPVKCLAIDPHEEFFVTGAGDGDIK------------------SPVKCLAIDPHE 134
F AH ++ +A+ P + + ++G+ D +K V C+A +P +
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 135 -EFFVTGAGDGDIKVWSL 151
F +G D +KVWSL
Sbjct: 153 PSTFASGCLDRTVKVWSL 170
Score = 27.7 bits (60), Expect = 4.9, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 28 SSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQR 87
+S+ + +WD Q K+ V H S VF P ++IS + G + + +
Sbjct: 204 ASDDLTIKIWDY---QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 88 VIRSRFNAHESPVKCLAIDP--HEEFFVTGAGDG----DIKSPVKCLAIDPHEEFFVTG- 140
+ N C+A P + + +G +G + + L++DP + +G
Sbjct: 261 KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGG 320
Query: 141 --AGDGDIKVWSLSGN 154
A DI + GN
Sbjct: 321 KNAAASDIFTAVIRGN 336
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 24/113 (21%)
Query: 51 FVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRS-RFNAHESPVKCLAIDPHE 109
F+ H + S+ F+P ++ ++S G+ + V +++ + + AH V C+ P
Sbjct: 105 FLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSP-- 162
Query: 110 EFFVTGAGDGDIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPG 162
+ +PV V+G D +KVW L+ L+ + G
Sbjct: 163 ----------SLDAPV-----------IVSGGWDNLVKVWDLATGRLVTDLKG 194
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 44/128 (34%), Gaps = 30/128 (23%)
Query: 92 RFNAHESPVKCLAIDPHEEFFVTGAGDGDIK-----------------SPVKC--LAIDP 132
AHE V C A + F T + D +K V C
Sbjct: 658 EIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSS 717
Query: 133 HEEFFVTGAGDGDIKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQLHVDGGSRLF-SC 191
H TG+ D +K+W L+ + R++ F H V +L SC
Sbjct: 718 HHLLLATGSSDCFLKLWDLN---------QKECRNTMFGHTN-SVNHCRFSPDDKLLASC 767
Query: 192 GADGSMKV 199
ADG++K+
Sbjct: 768 SADGTLKL 775
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 125 VKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLY 158
V+C A TG +G+I++W++S LL+
Sbjct: 1136 VRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLH 1169
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 96 HESPVKCLAIDPHEEFFVTGAGDGDI----KSPVKCLAIDPHEEFFVTGAGDGDIKVWSL 151
E+ V LA+D + G I ++ V C + PH ++ G +G I++ L
Sbjct: 937 QENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILEL 996
Query: 152 SGNHLL 157
N +
Sbjct: 997 VNNRIF 1002
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 21/159 (13%)
Query: 57 GASSLVFAPQHQLLISAGKKGDIC---VIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFV 113
G+S L + + + KK +C I L+Q I F +E+ V LA+D +
Sbjct: 901 GSSFLTASDDQTIRVWETKK--VCKNSAIVLKQE-IDVVFQENETMV--LAVDNIRGLQL 955
Query: 114 TGAGDGDI----KSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPGEHARSSF 169
G I ++ V C + PH E+ G DG IK+ L N + + G H ++
Sbjct: 956 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG-HKKA-- 1012
Query: 170 FKHIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
+HI Q DG + L S D ++V D V
Sbjct: 1013 VRHI-----QFTADGKT-LISSSEDSVIQVWNWQTGDYV 1045
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 18/115 (15%)
Query: 97 ESPVKCLAIDPHEEFFVTGAGDGDIKSPVKCLAIDPHEEFFVTGAG------------DG 144
E+ V C + PH E+ G DG IK + P+ F +G G DG
Sbjct: 968 EAQVSCCCLSPHLEYVAFGDEDGAIK-----IIELPNNRVFSSGVGHKKAVRHIQFTADG 1022
Query: 145 DIKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKV 199
+ S S + ++ + + F + + V + SRL S DG++KV
Sbjct: 1023 KTLI-SSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKV 1076
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 17/111 (15%)
Query: 66 QHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG------ 119
Q L+S G + V ++ I F H+ V AI F + + D
Sbjct: 1061 QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1120
Query: 120 -DIKSP----------VKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYN 159
D+ SP V+C A TG +G+I++W++S LL++
Sbjct: 1121 FDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1171
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 31/138 (22%)
Query: 93 FNAHESPVKCLAIDPHEEFFVTGAGDGDIK---SPVKCL--AIDPHEE------------ 135
AHE V C A + + T + D +K S L D H E
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 136 --FFVTGAGDGDIKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQLHVDGGSRLFSCGA 193
TG+ D +K+W L+ + R++ F H L SC A
Sbjct: 720 HLLLATGSNDFFLKLWDLN---------QKECRNTMFGHTNSVNHCRFSPDDELLASCSA 770
Query: 194 DGSMK---VRQLPDRDAV 208
DG+++ VR +R ++
Sbjct: 771 DGTLRLWDVRSANERKSI 788
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 21/159 (13%)
Query: 57 GASSLVFAPQHQLLISAGKKGDIC---VIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFV 113
G+S L + + + KK +C I L+Q I F +E+ V LA+D +
Sbjct: 894 GSSFLTASDDQTIRVWETKK--VCKNSAIVLKQE-IDVVFQENETMV--LAVDNIRGLQL 948
Query: 114 TGAGDGDI----KSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPGEHARSSF 169
G I ++ V C + PH E+ G DG IK+ L N + + G H ++
Sbjct: 949 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG-HKKA-- 1005
Query: 170 FKHIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
+HI Q DG + L S D ++V D V
Sbjct: 1006 VRHI-----QFTADGKT-LISSSEDSVIQVWNWQTGDYV 1038
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 18/115 (15%)
Query: 97 ESPVKCLAIDPHEEFFVTGAGDGDIKSPVKCLAIDPHEEFFVTGAG------------DG 144
E+ V C + PH E+ G DG IK + P+ F +G G DG
Sbjct: 961 EAQVSCCCLSPHLEYVAFGDEDGAIK-----IIELPNNRVFSSGVGHKKAVRHIQFTADG 1015
Query: 145 DIKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKV 199
+ S S + ++ + + F + + V + SRL S DG++KV
Sbjct: 1016 KTLI-SSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKV 1069
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 17/111 (15%)
Query: 66 QHQLLISAGKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDG------ 119
Q L+S G + V ++ I F H+ V AI F + + D
Sbjct: 1054 QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113
Query: 120 -DIKSP----------VKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYN 159
D+ SP V+C A TG +G+I++W++S LL++
Sbjct: 1114 FDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 49/138 (35%), Gaps = 31/138 (22%)
Query: 93 FNAHESPVKCLAIDPHEEFFVTGAGDGDIK---SPVKCL--AIDPHEE------------ 135
AHE V C A + + T + D +K S L D H E
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 136 --FFVTGAGDGDIKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQLHVDGGSRLFSCGA 193
TG+ D +K+W L+ + R++ F H L SC A
Sbjct: 713 HLLLATGSNDFFLKLWDLN---------QKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763
Query: 194 DGSMK---VRQLPDRDAV 208
DG+++ VR +R ++
Sbjct: 764 DGTLRLWDVRSANERKSI 781
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 118 DGDIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNF 160
D ++ PV + P +F T DG I W+L + NF
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 118 DGDIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNF 160
D ++ PV + P +F T DG I W+L + NF
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 118 DGDIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNF 160
D ++ PV + P +F T DG I W+L + NF
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 118 DGDIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNF 160
D ++ PV + P +F T DG I W+L + NF
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 26/95 (27%)
Query: 83 DLRQRVIRSR-------FNAHESPVKCLAIDPHEEFFVTGAGDGDIKSP----------- 124
D R RV F AH ++ +A+ P + + ++G+ D +K
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135
Query: 125 -------VKCLAIDPHE-EFFVTGAGDGDIKVWSL 151
V C+A +P + F +G D +KVWSL
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 12/137 (8%)
Query: 28 SSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQR 87
+S+ + +WD Q K+ V H S VF P ++IS + G + + +
Sbjct: 204 ASDDLTIKIWDY---QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 88 VIRSRFNAHESPVKCLAIDP--HEEFFVTGAGDG----DIKSPVKCLAIDPHEEFFVTG- 140
+ N C+A P + + +G +G + + L++DP + +G
Sbjct: 261 KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGG 320
Query: 141 --AGDGDIKVWSLSGNH 155
A DI + GN
Sbjct: 321 KNAAASDIFTAVIRGNE 337
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 26/95 (27%)
Query: 83 DLRQRVIRSR-------FNAHESPVKCLAIDPHEEFFVTGAGDGDIKSP----------- 124
D R RV F AH ++ +A+ P + + ++G+ D +K
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135
Query: 125 -------VKCLAIDPHE-EFFVTGAGDGDIKVWSL 151
V C+A +P + F +G D +KVWSL
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 28 SSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQR 87
+S+ + +WD Q K+ V H S VF P ++IS + G + + +
Sbjct: 204 ASDDLTIKIWDY---QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 88 VIRSRFNAHESPVKCLAIDP--HEEFFVTGAGDG 119
+ N C+A P + + +G +G
Sbjct: 261 KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 26/95 (27%)
Query: 83 DLRQRVIRSR-------FNAHESPVKCLAIDPHEEFFVTGAGDGDIKSP----------- 124
D R RV F AH ++ +A+ P + + ++G+ D +K
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT 135
Query: 125 -------VKCLAIDPHE-EFFVTGAGDGDIKVWSL 151
V C+A +P + F +G D +KVWSL
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 28 SSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQR 87
+S+ + +WD Q K+ V H S VF P ++IS + G + + +
Sbjct: 204 ASDDLTIKIWDY---QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 88 VIRSRFNAHESPVKCLAIDP--HEEFFVTGAGDG 119
+ N C+A P + + +G +G
Sbjct: 261 KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 30.8 bits (68), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 19/101 (18%)
Query: 112 FVTGAGDGDIK-----------------SPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGN 154
F+ G +GDIK S + L P E ++ + D +K+WS+
Sbjct: 109 FILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG 168
Query: 155 HLLYNFPGEHARSSFFKHI--GQGVTQLHVDGGSRLFSCGA 193
G A + I G+ V +DG RL+ CG
Sbjct: 169 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 209
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 19/101 (18%)
Query: 112 FVTGAGDGDIK-----------------SPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGN 154
F+ G +GDIK S + L P E ++ + D +K+WS+
Sbjct: 112 FILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG 171
Query: 155 HLLYNFPGEHARSSFFKHI--GQGVTQLHVDGGSRLFSCGA 193
G A + I G+ V +DG RL+ CG
Sbjct: 172 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 212
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 62/175 (35%), Gaps = 41/175 (23%)
Query: 7 NKITSDFVFLGSCSLVATAGHSSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQ 66
N + ++ GSC V LWD + + V+ + H+ +S+ F P
Sbjct: 214 NSLNANMFISGSCD-----------TTVRLWDLRITSRA--VRTYHGHEGDINSVKFFPD 260
Query: 67 HQLLISAGKKGDICVIDLR---QRVIRSR---FNAHESP-VKCLAIDPHEEFFVTGAGDG 119
Q + G + D+R Q + +R N +E P V +A G +G
Sbjct: 261 GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG 320
Query: 120 DI---------------------KSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSG 153
D + + CL + TG+ D ++K+W+ SG
Sbjct: 321 DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375
>pdb|3AV0|A Chain A, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 386
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 101 KCLAIDPHEEFFVTGAGD--GDIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLY 158
K L I P V +GD D++ PVK L I + +IKV+ ++GNH +
Sbjct: 55 KILEIKPD---VVLHSGDLFNDLRPPVKALRIAMQA---FKKLHENNIKVYIVAGNHEMP 108
Query: 159 NFPGEHARSSFFK---HIGQGVTQLHVDGGSRLFSCGA 193
GE + + K I G ++V+ G +F CG
Sbjct: 109 RRLGEESPLALLKDYVKILDGKDVINVN-GEEIFICGT 145
>pdb|3AUZ|A Chain A, Crystal Structure Of Mre11 With Manganese
Length = 333
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 101 KCLAIDPHEEFFVTGAGD--GDIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLY 158
K L I P V +GD D++ PVK L I + +IKV+ ++GNH +
Sbjct: 55 KILEIKPD---VVLHSGDLFNDLRPPVKALRIAMQA---FKKLHENNIKVYIVAGNHEMP 108
Query: 159 NFPGEHARSSFFK---HIGQGVTQLHVDGGSRLFSCGA 193
GE + + K I G ++V+ G +F CG
Sbjct: 109 RRLGEESPLALLKDYVKILDGKDVINVN-GEEIFICGT 145
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 122 KSPVKCLAIDPHEEFFV-TGAGDGDIKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQL 180
+ P+ C+ P+++ V TG DG + +W + + + H + H
Sbjct: 236 RVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVH-------F 288
Query: 181 HVDGGSRLFSCGADGSM----KVRQLPDRDAVVH 210
H LF+C DGS+ +P++ ++ H
Sbjct: 289 HPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLFH 322
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 14/106 (13%)
Query: 106 DPHEEFFVTGAGDGDIKSPVKCLAIDPHE---EFFVTGAGDGDIKVWSLSGNHLLYNFPG 162
+P ++ VT + D I CL+ P F + G+ D++ W + + G
Sbjct: 27 NPMKDIEVTSSPDDSIG----CLSFSPPTLPGNFLIAGSWANDVRCWEVQDS-------G 75
Query: 163 EHARSSFFKHIGQGVTQLHVDGGSRLFSCGADGSMKVRQLPDRDAV 208
+ + H G + D GS++F+ D + K+ L A+
Sbjct: 76 QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI 121
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 123 SPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQLHV 182
S V+C+ + HE+ V+G+ D ++VW + L+ G A ++
Sbjct: 200 STVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY---------- 247
Query: 183 DGGSRLFSCGADGSMKVRQLPDRDAVVHTL 212
G R+ S D +KV P+ + +HTL
Sbjct: 248 -DGRRVVSGAYDFMVKVWD-PETETCLHTL 275
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 51/147 (34%), Gaps = 29/147 (19%)
Query: 34 VCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRF 93
V +WD P+ + + H SL F H ++S I V D+
Sbjct: 261 VKVWD---PETETCLHTLQGHTNRVYSLQFDGIH--VVSGSLDTSIRVWDVETGNCIHTL 315
Query: 94 NAHESPVKCLAIDPHEEFFVTGAGDGDIK--------------------SPVKCLAIDPH 133
H+S ++ + V+G D +K S V CL +
Sbjct: 316 TGHQSLTS--GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-- 371
Query: 134 EEFFVTGAGDGDIKVWSLSGNHLLYNF 160
+ F +T + DG +K+W L + N
Sbjct: 372 KNFVITSSDDGTVKLWDLKTGEFIRNL 398
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 124 PVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHLLYNFPGEHARSSFFKHIGQGVTQLHVD 183
P+ L + + ++ + DG +++W GN ++++ F+ H Q +
Sbjct: 249 PISVLEFNDTNKLLLSASDDGTLRIWH-GGNG--------NSQNCFYGH-SQSIVSASWV 298
Query: 184 GGSRLFSCGADGSMKVRQL 202
G ++ SC DGS+++ L
Sbjct: 299 GDDKVISCSMDGSVRLWSL 317
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 20/102 (19%)
Query: 74 GKKGDICVIDLRQRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDGDIK-------SPVK 126
G KG I V + ++ + H P+ L + + ++ + DG ++ +
Sbjct: 224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN 283
Query: 127 CLAIDPHEEFFVTGAG-----------DGDIKVWSLSGNHLL 157
C H + V+ + DG +++WSL N LL
Sbjct: 284 CFY--GHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLL 323
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 112 FVTGAGDGDIKSPVKCLAIDPHEEFFVTGAGDGDIKVWSLSGNHL-LYNF 160
F A G + V CLA VTG +G++++W+ +G L + NF
Sbjct: 98 FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNF 147
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 23/145 (15%)
Query: 38 DSLLPQKKALVQAFVCHDQGASSLVFAPQHQLLISAGKKGDICVIDLRQRVIRSRFNAHE 97
+++ +KK++ H S+ F +++A G + D+ + F+ H
Sbjct: 141 ENMAAKKKSVAM----HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHG 196
Query: 98 SPVKCLAIDPHE--EFFVTGAGDG-----DIKSPVKCLAIDPHE------------EFFV 138
+ V CL + P E FV+G D D++S A + HE + F
Sbjct: 197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFA 256
Query: 139 TGAGDGDIKVWSLSGNHLLYNFPGE 163
+G+ D +++ L + + + E
Sbjct: 257 SGSDDATCRLYDLRADREVAIYSKE 281
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 27/135 (20%)
Query: 28 SSESKNVCLWDSLLPQKKALVQAFVCHDQGASSLVFAPQ--HQLLISAGKKGDICVIDLR 85
+S + + LW++L K + + H S + F+P ++SA + V +L
Sbjct: 490 ASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 86 QRVIRSRFNAHESPVKCLAIDPHEEFFVTGAGDGDIKSPVKCLAIDPHEEFFVTGAGDGD 145
+RS H V +A+ P DG + C +G DG
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSP----------DGSL-----C----------ASGGKDGV 584
Query: 146 IKVWSLSGNHLLYNF 160
+ +W L+ LY+
Sbjct: 585 VLLWDLAEGKKLYSL 599
>pdb|1EDT|A Chain A, Crystal Structure Of Endo-Beta-N-Acetylglucosaminidase H
At 1.9 Angstroms Resolution: Active Site Geometry And
Substrate Recognition
Length = 271
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 146 IKVW-SLSGNHL---LYNFPGEHARSSFFKHIGQGVTQLHVDG 184
IKV S+ GNH NFP + A S+F K + V + +DG
Sbjct: 84 IKVLLSVLGNHQGAGFANFPSQQAASAFAKQLSDAVAKYGLDG 126
>pdb|1C91|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, E132d
Length = 265
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 146 IKVW-SLSGNHL---LYNFPGEHARSSFFKHIGQGVTQLHVDG 184
IKV S+ GNH NFP + A S+F K + V + +DG
Sbjct: 79 IKVLLSVLGNHQGAGFANFPSQQAASAFAKQLSDAVAKYGLDG 121
>pdb|1C90|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, E132q Mutant
pdb|1C90|B Chain B, Endo-Beta-N-Acetylglucosaminidase H, E132q Mutant
Length = 265
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 146 IKVW-SLSGNHL---LYNFPGEHARSSFFKHIGQGVTQLHVDG 184
IKV S+ GNH NFP + A S+F K + V + +DG
Sbjct: 79 IKVLLSVLGNHQGAGFANFPSQQAASAFAKQLSDAVAKYGLDG 121
>pdb|1C92|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, E132a Mutant
Length = 265
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 146 IKVW-SLSGNHL---LYNFPGEHARSSFFKHIGQGVTQLHVDG 184
IKV S+ GNH NFP + A S+F K + V + +DG
Sbjct: 79 IKVLLSVLGNHQGAGFANFPSQQAASAFAKQLSDAVAKYGLDG 121
>pdb|1C8Y|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130a Mutant
Length = 265
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 146 IKVW-SLSGNHL---LYNFPGEHARSSFFKHIGQGVTQLHVDG 184
IKV S+ GNH NFP + A S+F K + V + +DG
Sbjct: 79 IKVLLSVLGNHQGAGFANFPSQQAASAFAKQLSDAVAKYGLDG 121
>pdb|1C8X|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130e Mutant
Length = 265
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 146 IKVW-SLSGNHL---LYNFPGEHARSSFFKHIGQGVTQLHVDG 184
IKV S+ GNH NFP + A S+F K + V + +DG
Sbjct: 79 IKVLLSVLGNHQGAGFANFPSQQAASAFAKQLSDAVAKYGLDG 121
>pdb|1C3F|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130n Mutant
Length = 265
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 146 IKVW-SLSGNHL---LYNFPGEHARSSFFKHIGQGVTQLHVDG 184
IKV S+ GNH NFP + A S+F K + V + +DG
Sbjct: 79 IKVLLSVLGNHQGAGFANFPSQQAASAFAKQLSDAVAKYGLDG 121
>pdb|1C93|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130nE132Q DOUBLE
Mutant
Length = 265
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 146 IKVW-SLSGNHL---LYNFPGEHARSSFFKHIGQGVTQLHVDG 184
IKV S+ GNH NFP + A S+F K + V + +DG
Sbjct: 79 IKVLLSVLGNHQGAGFANFPSQQAASAFAKQLSDAVAKYGLDG 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,748,053
Number of Sequences: 62578
Number of extensions: 286153
Number of successful extensions: 788
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 605
Number of HSP's gapped (non-prelim): 203
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)