BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7434
(91 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54366|GSC_DROME Homeobox protein goosecoid OS=Drosophila melanogaster GN=Gsc PE=2
SV=1
Length = 419
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 66/121 (54%), Gaps = 42/121 (34%)
Query: 12 VAYPNLYPGYMT--------------HAAATIAAMAASQHS------------------- 38
VAYPN YP YM H + A ++ H
Sbjct: 211 VAYPNFYPNYMHAAAVAHVAAAQMQAHVSGAAAGLSGHGHHPHHPHGHPHHPHLGAHHHG 270
Query: 39 ---------APPPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERV 89
PPPKRKRRHRTIFTEEQLEQLEATF+KTHYPDVVLREQLALKVDLKEERV
Sbjct: 271 QHHLSHLGHGPPPKRKRRHRTIFTEEQLEQLEATFDKTHYPDVVLREQLALKVDLKEERV 330
Query: 90 E 90
E
Sbjct: 331 E 331
>sp|A2T7P4|GSC_PONPY Homeobox protein goosecoid OS=Pongo pygmaeus GN=GSC PE=3 SV=1
Length = 257
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 40/48 (83%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+RKRRHRTIFT+EQLE LE F++T YPDV REQLA KV L+EE+VE
Sbjct: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE 205
>sp|A1YFI3|GSC_SAGLB Homeobox protein goosecoid OS=Saguinus labiatus GN=GSC PE=3 SV=1
Length = 257
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 40/48 (83%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+RKRRHRTIFT+EQLE LE F++T YPDV REQLA KV L+EE+VE
Sbjct: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE 205
>sp|A2T733|GSC_PANTR Homeobox protein goosecoid OS=Pan troglodytes GN=GSC PE=3 SV=1
Length = 257
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 40/48 (83%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+RKRRHRTIFT+EQLE LE F++T YPDV REQLA KV L+EE+VE
Sbjct: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE 205
>sp|A1YG57|GSC_PANPA Homeobox protein goosecoid OS=Pan paniscus GN=GSC PE=3 SV=1
Length = 257
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 40/48 (83%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+RKRRHRTIFT+EQLE LE F++T YPDV REQLA KV L+EE+VE
Sbjct: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE 205
>sp|A1YEY5|GSC_GORGO Homeobox protein goosecoid OS=Gorilla gorilla gorilla GN=GSC PE=3
SV=1
Length = 257
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 40/48 (83%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+RKRRHRTIFT+EQLE LE F++T YPDV REQLA KV L+EE+VE
Sbjct: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE 205
>sp|Q02591|GSC_MOUSE Homeobox protein goosecoid OS=Mus musculus GN=Gsc PE=2 SV=1
Length = 256
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 40/48 (83%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+RKRRHRTIFT+EQLE LE F++T YPDV REQLA KV L+EE+VE
Sbjct: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE 205
>sp|P56915|GSC_HUMAN Homeobox protein goosecoid OS=Homo sapiens GN=GSC PE=1 SV=2
Length = 257
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 40/48 (83%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+RKRRHRTIFT+EQLE LE F++T YPDV REQLA KV L+EE+VE
Sbjct: 158 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE 205
>sp|P53545|GSC_CHICK Homeobox protein goosecoid OS=Gallus gallus GN=GSC PE=2 SV=1
Length = 245
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 40/48 (83%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+RKRRHRTIFT+EQLE LE F++T YPDV REQLA KV L+EE+VE
Sbjct: 148 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE 195
>sp|P53544|GSC_DANRE Homeobox protein goosecoid OS=Danio rerio GN=gsc PE=2 SV=1
Length = 240
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 40/48 (83%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+RKRRHRTIFT+EQLE LE F++T YPDV REQLA KV L+EE+VE
Sbjct: 144 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE 191
>sp|Q91574|ALX1_XENLA ALX homeobox protein 1 OS=Xenopus laevis GN=alx1 PE=2 SV=1
Length = 335
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 47/85 (55%)
Query: 6 GASMVAVAYPNLYPGYMTHAAATIAAMAASQHSAPPPKRKRRHRTIFTEEQLEQLEATFE 65
G SM + PG + + S +KRRHRT FT QLE+LE F+
Sbjct: 102 GRSMDTCCSLAVSPGKSMADKVELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQ 161
Query: 66 KTHYPDVVLREQLALKVDLKEERVE 90
KTHYPDV +REQLAL+ +L E RV+
Sbjct: 162 KTHYPDVYVREQLALRTELTEARVQ 186
>sp|P53546|GSCB_XENLA Homeobox protein goosecoid isoform B OS=Xenopus laevis GN=gsc-b
PE=2 SV=1
Length = 243
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 40/48 (83%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+RKRRHRTIFT+EQLE LE F++T YPDV REQLA +V L+EE+VE
Sbjct: 146 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARRVHLREEKVE 193
>sp|P29454|GSCA_XENLA Homeobox protein goosecoid isoform A OS=Xenopus laevis GN=gsc-a
PE=2 SV=2
Length = 243
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 40/48 (83%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+RKRRHRTIFT+EQLE LE F++T YPDV REQLA +V L+EE+VE
Sbjct: 146 RRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARRVHLREEKVE 193
>sp|O43186|CRX_HUMAN Cone-rod homeobox protein OS=Homo sapiens GN=CRX PE=1 SV=1
Length = 299
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 12 VAYPNLYPGYMTHAAATIAAMAASQHSAPP----PKRKRRHRTIFTEEQLEQLEATFEKT 67
+AY N P Y +A A H A P P+++RR RT FT QLE+LEA F KT
Sbjct: 2 MAYMNPGPHYSVNALALSGPSVDLMHQAVPYPSAPRKQRRERTTFTRSQLEELEALFAKT 61
Query: 68 HYPDVVLREQLALKVDLKEERVE 90
YPDV RE++ALK++L E RV+
Sbjct: 62 QYPDVYAREEVALKINLPESRVQ 84
>sp|O54751|CRX_MOUSE Cone-rod homeobox protein OS=Mus musculus GN=Crx PE=2 SV=1
Length = 299
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 12 VAYPNLYPGYMTHAAATIAAMAASQHSAPP----PKRKRRHRTIFTEEQLEQLEATFEKT 67
+AY N P Y +A A H A P P+++RR RT FT QLE+LEA F KT
Sbjct: 2 MAYMNPGPHYSVNALALSGPNVDLMHQAVPYSSAPRKQRRERTTFTRSQLEELEALFAKT 61
Query: 68 HYPDVVLREQLALKVDLKEERVE 90
YPDV RE++ALK++L E RV+
Sbjct: 62 QYPDVYAREEVALKINLPESRVQ 84
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 37/47 (78%)
Query: 44 RKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+KRR+RT FT QLE+LE F+KTHYPDV REQLA++ DL E RV+
Sbjct: 199 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 245
>sp|Q15699|ALX1_HUMAN ALX homeobox protein 1 OS=Homo sapiens GN=ALX1 PE=1 SV=2
Length = 326
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 38/47 (80%)
Query: 44 RKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+KRRHRT FT QLE+LE F+KTHYPDV +REQLAL+ +L E RV+
Sbjct: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQ 177
>sp|Q63087|ALX1_RAT ALX homeobox protein 1 OS=Rattus norvegicus GN=Alx1 PE=2 SV=1
Length = 326
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 38/47 (80%)
Query: 44 RKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+KRRHRT FT QLE+LE F+KTHYPDV +REQLAL+ +L E RV+
Sbjct: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQ 177
>sp|Q8C8B0|ALX1_MOUSE ALX homeobox protein 1 OS=Mus musculus GN=Alx1 PE=1 SV=1
Length = 326
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 38/47 (80%)
Query: 44 RKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+KRRHRT FT QLE+LE F+KTHYPDV +REQLAL+ +L E RV+
Sbjct: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQ 177
>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
SV=1
Length = 399
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 37/47 (78%)
Query: 44 RKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+KRR+RT FT QLE+LE F+KTHYPDV REQLA++ DL E RV+
Sbjct: 201 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 247
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 37/47 (78%)
Query: 44 RKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+KRR+RT FT QLE+LE F+KTHYPDV REQLA++ DL E RV+
Sbjct: 213 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 259
>sp|P56916|GSC2_MOUSE Homeobox protein goosecoid-2 OS=Mus musculus GN=Gsc2 PE=2 SV=1
Length = 198
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 50/73 (68%), Gaps = 3/73 (4%)
Query: 19 PGYMTHAAATIAAMAASQHSAPPPKRK-RRHRTIFTEEQLEQLEATFEKTHYPDVVLREQ 77
P +T A A+ + S P P+R+ RRHRTIF+EEQL+ LEA F + YPDV RE+
Sbjct: 95 PSPLTAPRAGSPALTGT--SGPGPQRRTRRHRTIFSEEQLQALEALFVQNQYPDVGTRER 152
Query: 78 LALKVDLKEERVE 90
LA+++ L+EERVE
Sbjct: 153 LAVRIRLREERVE 165
>sp|Q9XSK0|CRX_BOVIN Cone-rod homeobox protein OS=Bos taurus GN=CRX PE=2 SV=1
Length = 299
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 38/49 (77%)
Query: 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
P+++RR RT FT QLE+LEA F KT YPDV RE++ALK++L E RV+
Sbjct: 36 PRKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQ 84
>sp|Q8SQ03|CRX_CANFA Cone-rod homeobox protein OS=Canis familiaris GN=CRX PE=2 SV=1
Length = 299
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 38/49 (77%)
Query: 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
P+++RR RT FT QLE+LEA F KT YPDV RE++ALK++L E RV+
Sbjct: 36 PRKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRVQ 84
>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 OS=Homo sapiens GN=ALX3 PE=1
SV=2
Length = 343
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 37/47 (78%)
Query: 44 RKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+KRR+RT F+ QLE+LE F+KTHYPDV REQLAL+ DL E RV+
Sbjct: 152 KKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQ 198
>sp|O70137|ALX3_MOUSE Homeobox protein aristaless-like 3 OS=Mus musculus GN=Alx3 PE=2
SV=1
Length = 343
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 37/47 (78%)
Query: 44 RKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+KRR+RT F+ QLE+LE F+KTHYPDV REQLAL+ DL E RV+
Sbjct: 152 KKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQ 198
>sp|O15499|GSC2_HUMAN Homeobox protein goosecoid-2 OS=Homo sapiens GN=GSC2 PE=2 SV=1
Length = 205
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 38/48 (79%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+R RRHRTIF+EEQL+ LEA F + YPDV RE+LA ++ L+EERVE
Sbjct: 124 RRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVE 171
>sp|Q91ZK4|DMBX1_MOUSE Diencephalon/mesencephalon homeobox protein 1 OS=Mus musculus
GN=Dmbx1 PE=1 SV=1
Length = 381
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 29 IAAMAASQHSAPPPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEER 88
+ A SQH +++RR RT FT +QLE LE TF+KTHYPDVV+RE+LA+ +L E R
Sbjct: 60 LEARYGSQH-----RKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEAR 114
Query: 89 VE 90
V+
Sbjct: 115 VQ 116
>sp|Q566X8|DMX1B_DANRE Diencephalon/mesencephalon homeobox protein 1-B OS=Danio rerio
GN=dmbx1b PE=2 SV=1
Length = 369
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 29 IAAMAASQHSAPPPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEER 88
+ A SQH +++RR RT FT +QLE LE TF+KTHYPDVV+RE+LA+ +L E R
Sbjct: 55 LEARYGSQH-----RKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEAR 109
Query: 89 VE 90
V+
Sbjct: 110 VQ 111
>sp|Q9GMA3|VSX1_BOVIN Visual system homeobox 1 OS=Bos taurus GN=VSX1 PE=2 SV=1
Length = 365
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 39/52 (75%)
Query: 39 APPPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
AP ++KRRHRT+FT QLE+LE F + HYPDV RE LA+K +L E+R++
Sbjct: 158 APSKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAMKTELPEDRIQ 209
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 39/48 (81%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+++RR+RT FT QLE+LE F+KTHYPDV RE+LA+++DL E RV+
Sbjct: 330 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 377
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 39/48 (81%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+++RR+RT FT QLE+LE F+KTHYPDV RE+LA+++DL E RV+
Sbjct: 326 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 373
>sp|Q8NFW5|DMBX1_HUMAN Diencephalon/mesencephalon homeobox protein 1 OS=Homo sapiens
GN=DMBX1 PE=1 SV=1
Length = 382
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 29 IAAMAASQHSAPPPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEER 88
+ A SQH +++RR RT FT +QLE LE TF+KTHYPDVV+RE+LA+ +L E R
Sbjct: 60 LEARYGSQH-----RKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEAR 114
Query: 89 VE 90
V+
Sbjct: 115 VQ 116
>sp|Q8JI10|DMX1A_DANRE Diencephalon/mesencephalon homeobox protein 1-A OS=Danio rerio
GN=dmbx1a PE=2 SV=1
Length = 388
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 29 IAAMAASQHSAPPPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEER 88
+ A SQH +++RR RT FT +QLE LE TF+KTHYPDVV+RE+LA+ +L E R
Sbjct: 60 LEARYGSQH-----RKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEAR 114
Query: 89 VE 90
V+
Sbjct: 115 VQ 116
>sp|Q28EM7|OTX5_XENTR Homeobox protein otx5 OS=Xenopus tropicalis GN=otx5 PE=2 SV=1
Length = 290
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 38/49 (77%)
Query: 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
P+++RR RT FT QL+ LEA F KT YPD+ +RE++ALK++L E RV+
Sbjct: 35 PRKQRRERTTFTRAQLDILEALFAKTRYPDIFMREEVALKINLPESRVQ 83
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 39/48 (81%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+++RR+RT FT QLE+LE F+KTHYPDV RE+LA+++DL E RV+
Sbjct: 328 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 375
>sp|Q91994|OTX1B_DANRE Homeobox protein OTX1 B OS=Danio rerio GN=otx1b PE=2 SV=1
Length = 323
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 38/49 (77%)
Query: 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
P+++RR RT FT QL+ LEA F KT YPD+ +RE++ALK++L E RV+
Sbjct: 35 PRKQRRERTTFTRSQLDILEALFAKTRYPDIFMREEVALKINLPESRVQ 83
>sp|Q0P031|VSX1_XENLA Visual system homeobox 1 OS=Xenopus laevis GN=vsx1 PE=2 SV=1
Length = 344
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/53 (54%), Positives = 40/53 (75%)
Query: 38 SAPPPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
SA ++KRRHRT+FT QL++LE +F + HYPDV RE LALK +L E+R++
Sbjct: 143 SAQSKRKKRRHRTVFTAHQLDELEKSFNEAHYPDVYAREMLALKTELPEDRIQ 195
>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
Length = 342
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 19 PGYMTHAAATIAAMAASQHSAPPPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQL 78
PG AA + + S+ PP K+ RR+RT FT QL +LE FEK+HYPDV RE+L
Sbjct: 113 PGLPVGPAAGDSKL--SEEEEPPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREEL 170
Query: 79 ALKVDLKEERVE 90
A KV+L E RV+
Sbjct: 171 AGKVNLPEVRVQ 182
>sp|Q9NZR4|VSX1_HUMAN Visual system homeobox 1 OS=Homo sapiens GN=VSX1 PE=1 SV=2
Length = 365
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 37/48 (77%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
++KRRHRT+FT QLE+LE F + HYPDV RE LA+K +L E+R++
Sbjct: 162 RKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQ 209
>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=2
SV=1
Length = 263
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 39/48 (81%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+++RR+RT FT +QLE LEA F +THYPDV RE+LA+K++L E RV+
Sbjct: 31 RKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQ 78
>sp|Q26657|ALX_STRPU Aristaless homeobox protein (Fragment) OS=Strongylocentrotus
purpuratus GN=ALX PE=2 SV=2
Length = 327
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 39/51 (76%)
Query: 40 PPPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
P +++RR+RT FT QLE+LE F KTHYPDV RE+LA++VDL E RV+
Sbjct: 207 PTKRKQRRYRTTFTSYQLEELERAFCKTHYPDVFTREELAMRVDLTEARVQ 257
>sp|Q8BYH0|DRGX_MOUSE Dorsal root ganglia homeobox protein OS=Mus musculus GN=Drgx PE=1
SV=2
Length = 263
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 39/48 (81%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+++RR+RT FT +QLE LEA F +THYPDV RE+LA+K++L E RV+
Sbjct: 31 RKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQ 78
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Query: 42 PKRK-RRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
PKRK RR+RT FT QLE+LE F +THYPDV RE+LA+K+ L E R++
Sbjct: 81 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 130
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 39/48 (81%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
+++RR+RT FT QLE+LE F+KTHYPDV RE+LA+++DL E RV+
Sbjct: 213 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 260
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Query: 19 PGYMTHAAATIAAMAASQHSAPPPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQL 78
PG AA + ++ + PP K+ RR+RT FT QL +LE FEK+HYPDV RE+L
Sbjct: 113 PGLSVGPAAGDSKLSEEE---PPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREEL 169
Query: 79 ALKVDLKEERVE 90
A KV+L E RV+
Sbjct: 170 AGKVNLPEVRVQ 181
>sp|P47237|PAX6_CHICK Paired box protein Pax-6 (Fragment) OS=Gallus gallus GN=PAX6 PE=1
SV=1
Length = 216
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Query: 43 KRK-RRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
KRK +R+RT FT+EQ+E LE FE+THYPDV RE+LA K+DL E R++
Sbjct: 7 KRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 55
>sp|Q26417|OTX_STRPU Homeobox protein OTX OS=Strongylocentrotus purpuratus GN=OTX PE=2
SV=1
Length = 371
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 38/50 (76%)
Query: 41 PPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
PP+++RR RT FT QL+ LE F +T YPD+ +RE++A+K++L E RV+
Sbjct: 127 PPRKQRRERTTFTRAQLDVLETLFSRTRYPDIFMREEVAMKINLPESRVQ 176
>sp|O42250|VSX1_DANRE Visual system homeobox 1 OS=Danio rerio GN=vsx1 PE=1 SV=2
Length = 344
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 37/48 (77%)
Query: 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
++KRRHRT+FT QLE+LE F + HYPDV RE LA+K +L E+R++
Sbjct: 149 RKKRRHRTVFTSHQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQ 196
>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
Length = 317
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 38/50 (76%)
Query: 41 PPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90
P K+ RR+RT FT QL +LE FEK+HYPDV RE+LA+KV+L E RV+
Sbjct: 118 PKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.128 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,337,665
Number of Sequences: 539616
Number of extensions: 1044767
Number of successful extensions: 4680
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 4075
Number of HSP's gapped (non-prelim): 622
length of query: 91
length of database: 191,569,459
effective HSP length: 61
effective length of query: 30
effective length of database: 158,652,883
effective search space: 4759586490
effective search space used: 4759586490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)