Query psy7434
Match_columns 91
No_of_seqs 130 out of 1058
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 18:13:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh5_A ZF-HD homeobox family p 99.4 8.5E-14 2.9E-18 79.0 4.3 50 42-91 14-67 (80)
2 2dmt_A Homeobox protein BARH-l 99.4 4.6E-14 1.6E-18 79.9 2.8 50 41-90 13-62 (80)
3 1wh7_A ZF-HD homeobox family p 99.4 5.1E-14 1.8E-18 79.9 2.6 49 42-91 14-67 (80)
4 2cra_A Homeobox protein HOX-B1 99.4 2.3E-13 8E-18 75.2 4.4 49 42-90 4-52 (70)
5 2djn_A Homeobox protein DLX-5; 99.4 3.2E-13 1.1E-17 74.6 4.4 49 42-90 4-52 (70)
6 2da2_A Alpha-fetoprotein enhan 99.4 4.2E-13 1.4E-17 74.1 4.6 49 42-90 4-52 (70)
7 1nk2_P Homeobox protein VND; h 99.4 4.8E-13 1.6E-17 75.2 4.9 50 41-90 5-54 (77)
8 2dmu_A Homeobox protein goosec 99.4 3.7E-13 1.3E-17 74.3 4.3 48 43-90 5-52 (70)
9 2kt0_A Nanog, homeobox protein 99.4 4E-13 1.4E-17 76.6 4.3 51 41-91 18-68 (84)
10 2da3_A Alpha-fetoprotein enhan 99.4 1.1E-13 3.8E-18 78.1 1.9 51 40-90 12-62 (80)
11 2dms_A Homeobox protein OTX2; 99.4 3.7E-13 1.3E-17 76.1 4.1 49 42-90 4-52 (80)
12 2cue_A Paired box protein PAX6 99.4 4.7E-13 1.6E-17 75.7 4.0 48 43-90 5-52 (80)
13 2vi6_A Homeobox protein nanog; 99.4 3.2E-13 1.1E-17 73.0 2.8 47 44-90 2-48 (62)
14 1puf_A HOX-1.7, homeobox prote 99.4 5.7E-13 1.9E-17 74.9 3.9 50 41-90 9-58 (77)
15 2h1k_A IPF-1, pancreatic and d 99.4 4.1E-13 1.4E-17 72.8 3.2 47 44-90 2-48 (63)
16 2hdd_A Protein (engrailed home 99.4 3.5E-13 1.2E-17 72.6 2.9 46 45-90 3-48 (61)
17 1ig7_A Homeotic protein MSX-1; 99.4 5.6E-13 1.9E-17 71.0 3.7 45 46-90 1-45 (58)
18 2da1_A Alpha-fetoprotein enhan 99.4 3.8E-13 1.3E-17 74.2 3.1 49 42-90 4-52 (70)
19 1bw5_A ISL-1HD, insulin gene e 99.4 5.5E-13 1.9E-17 72.8 3.6 47 44-90 2-48 (66)
20 2dmq_A LIM/homeobox protein LH 99.3 9.5E-13 3.2E-17 74.3 4.6 48 43-90 5-52 (80)
21 2e1o_A Homeobox protein PRH; D 99.3 1.1E-12 3.8E-17 72.4 4.6 48 43-90 5-52 (70)
22 1wi3_A DNA-binding protein SAT 99.3 8.3E-13 2.9E-17 72.4 4.0 49 42-90 4-53 (71)
23 2l7z_A Homeobox protein HOX-A1 99.3 1.1E-12 3.9E-17 73.0 4.6 48 43-90 5-52 (73)
24 2m0c_A Homeobox protein arista 99.3 7.7E-13 2.6E-17 73.7 3.8 49 42-90 6-54 (75)
25 3a01_A Homeodomain-containing 99.3 9.8E-13 3.4E-17 76.4 4.2 51 41-91 13-63 (93)
26 1zq3_P PRD-4, homeotic bicoid 99.3 9.4E-13 3.2E-17 72.4 3.5 46 45-90 2-47 (68)
27 1jgg_A Segmentation protein EV 99.3 8.6E-13 2.9E-17 70.8 3.2 45 46-90 2-46 (60)
28 3rkq_A Homeobox protein NKX-2. 99.3 1E-12 3.5E-17 69.8 3.5 46 45-90 2-47 (58)
29 1akh_A Protein (mating-type pr 99.3 6.1E-13 2.1E-17 71.5 2.5 48 43-90 3-50 (61)
30 1fjl_A Paired protein; DNA-bin 99.3 1.1E-12 3.9E-17 74.3 3.6 49 42-90 15-63 (81)
31 1ftt_A TTF-1 HD, thyroid trans 99.3 9.1E-13 3.1E-17 72.4 2.9 46 45-90 2-47 (68)
32 1ahd_P Antennapedia protein mu 99.3 8.3E-13 2.9E-17 72.6 2.4 46 45-90 2-47 (68)
33 2r5y_A Homeotic protein sex co 99.3 9.8E-13 3.4E-17 75.6 2.8 49 43-91 26-74 (88)
34 3nar_A ZHX1, zinc fingers and 99.3 1.2E-12 4.2E-17 76.4 3.2 49 42-90 22-70 (96)
35 2ecc_A Homeobox and leucine zi 99.3 1.5E-12 5.1E-17 73.1 3.0 44 48-91 6-49 (76)
36 2da4_A Hypothetical protein DK 99.3 9.9E-13 3.4E-17 74.3 2.2 49 42-90 5-57 (80)
37 1b8i_A Ultrabithorax, protein 99.3 1.6E-12 5.5E-17 73.7 3.1 48 43-90 18-65 (81)
38 2k40_A Homeobox expressed in E 99.3 2.3E-12 7.8E-17 70.5 3.4 45 46-90 2-46 (67)
39 1yz8_P Pituitary homeobox 2; D 99.3 8.1E-13 2.8E-17 72.6 1.3 47 44-90 2-48 (68)
40 1b72_A Protein (homeobox prote 99.3 1.6E-12 5.4E-17 76.0 2.5 49 43-91 32-80 (97)
41 2dn0_A Zinc fingers and homeob 99.2 7.9E-12 2.7E-16 70.0 3.7 46 45-90 8-53 (76)
42 2ly9_A Zinc fingers and homeob 99.2 7.5E-12 2.6E-16 69.6 3.6 46 45-90 6-51 (74)
43 3a02_A Homeobox protein arista 99.2 6.1E-12 2.1E-16 67.4 2.6 43 48-90 2-44 (60)
44 1uhs_A HOP, homeodomain only p 99.2 6.8E-12 2.3E-16 69.5 2.9 45 46-90 2-47 (72)
45 2da5_A Zinc fingers and homeob 99.2 1.2E-11 4E-16 69.2 3.8 44 47-90 9-52 (75)
46 2hi3_A Homeodomain-only protei 99.2 8.3E-12 2.9E-16 69.4 2.9 46 46-91 3-49 (73)
47 1x2n_A Homeobox protein pknox1 99.2 1.9E-11 6.4E-16 67.9 4.3 48 43-90 5-55 (73)
48 2cuf_A FLJ21616 protein; homeo 99.2 1.9E-11 6.4E-16 71.1 3.4 49 42-90 4-67 (95)
49 3a03_A T-cell leukemia homeobo 99.2 1.5E-11 5.1E-16 65.1 2.6 41 50-90 2-42 (56)
50 1du6_A PBX1, homeobox protein 99.2 1.6E-11 5.3E-16 66.6 2.7 47 44-90 2-51 (64)
51 1e3o_C Octamer-binding transcr 99.1 1.3E-11 4.4E-16 78.0 2.5 50 42-91 98-147 (160)
52 1lfb_A Liver transcription fac 99.1 2.1E-11 7.3E-16 71.6 2.9 49 42-90 6-75 (99)
53 1puf_B PRE-B-cell leukemia tra 99.1 3.4E-11 1.2E-15 66.8 3.5 45 46-90 2-49 (73)
54 2da6_A Hepatocyte nuclear fact 99.1 5.2E-11 1.8E-15 70.2 4.2 41 42-82 3-43 (102)
55 1au7_A Protein PIT-1, GHF-1; c 99.1 2.4E-11 8.1E-16 75.8 2.7 50 42-91 84-133 (146)
56 3d1n_I POU domain, class 6, tr 99.1 7E-11 2.4E-15 73.9 4.2 49 42-90 90-138 (151)
57 2dmn_A Homeobox protein TGIF2L 99.1 1E-10 3.6E-15 66.5 4.5 48 43-90 5-55 (83)
58 2xsd_C POU domain, class 3, tr 99.1 2.5E-11 8.5E-16 77.0 2.0 50 42-91 96-145 (164)
59 1b72_B Protein (PBX1); homeodo 99.1 5.9E-11 2E-15 67.9 3.3 45 46-90 2-49 (87)
60 2ecb_A Zinc fingers and homeob 99.1 1.1E-10 3.8E-15 67.3 4.4 41 51-91 17-57 (89)
61 1mnm_C Protein (MAT alpha-2 tr 99.1 8.4E-11 2.9E-15 67.3 3.7 48 43-90 25-75 (87)
62 2dmp_A Zinc fingers and homeob 99.1 1.1E-10 3.8E-15 67.2 4.0 41 51-91 19-59 (89)
63 1k61_A Mating-type protein alp 99.1 9E-11 3.1E-15 62.7 3.3 42 49-90 2-46 (60)
64 3l1p_A POU domain, class 5, tr 99.1 7E-11 2.4E-15 74.3 2.8 49 43-91 94-142 (155)
65 2d5v_A Hepatocyte nuclear fact 99.0 8.8E-11 3E-15 74.2 3.1 49 42-90 94-142 (164)
66 2cqx_A LAG1 longevity assuranc 99.0 5.7E-11 2E-15 66.0 0.8 46 46-91 9-55 (72)
67 1le8_B Mating-type protein alp 99.0 2.9E-10 9.8E-15 64.6 3.2 44 47-90 4-50 (83)
68 3nau_A Zinc fingers and homeob 99.0 2.1E-10 7.1E-15 62.6 2.2 38 53-90 12-49 (66)
69 2e19_A Transcription factor 8; 99.0 3E-10 1E-14 61.7 2.4 43 49-91 7-49 (64)
70 2l9r_A Homeobox protein NKX-3. 98.9 4.7E-10 1.6E-14 61.8 2.4 43 49-91 8-50 (69)
71 1ic8_A Hepatocyte nuclear fact 98.9 2.3E-10 8E-15 74.3 0.2 43 41-83 111-153 (194)
72 2h8r_A Hepatocyte nuclear fact 98.9 8.8E-10 3E-14 72.7 2.8 44 40-83 137-180 (221)
73 1x2m_A LAG1 longevity assuranc 98.8 1.3E-09 4.6E-14 59.2 1.3 38 54-91 9-47 (64)
74 3k2a_A Homeobox protein MEIS2; 98.6 1.7E-08 5.8E-13 55.1 2.6 40 51-90 4-46 (67)
75 1mh3_A Maltose binding-A1 home 98.3 1.8E-07 6.3E-12 65.1 2.2 46 46-91 366-411 (421)
76 2da7_A Zinc finger homeobox pr 98.2 6.5E-07 2.2E-11 49.2 1.7 37 54-90 14-50 (71)
77 2lk2_A Homeobox protein TGIF1; 98.1 2E-06 6.9E-11 49.3 2.4 41 50-90 10-53 (89)
78 2rgt_A Fusion of LIM/homeobox 83.8 0.008 2.7E-07 37.4 -6.6 30 43-72 134-163 (169)
79 2ys9_A Homeobox and leucine zi 66.7 2 6.8E-05 23.2 0.9 33 58-90 19-51 (70)
80 2elh_A CG11849-PA, LD40883P; s 59.6 8.5 0.00029 20.7 2.7 38 46-88 17-54 (87)
81 3i5g_B Myosin regulatory light 50.2 36 0.0012 19.8 5.5 38 49-86 7-49 (153)
82 2glo_A Brinker CG9653-PA; prot 46.7 18 0.00063 17.7 2.6 40 49-89 3-42 (59)
83 1hlv_A CENP-B, major centromer 46.6 13 0.00045 21.1 2.2 38 48-88 4-41 (131)
84 1tc3_C Protein (TC3 transposas 41.2 16 0.00056 16.3 1.8 34 51-89 5-38 (51)
85 3hug_A RNA polymerase sigma fa 40.3 10 0.00035 20.4 1.0 34 52-90 38-71 (92)
86 1iuf_A Centromere ABP1 protein 39.5 44 0.0015 19.6 3.9 41 46-89 6-53 (144)
87 1ku3_A Sigma factor SIGA; heli 38.4 11 0.00038 19.3 0.9 39 51-90 10-48 (73)
88 1p4w_A RCSB; solution structur 36.3 13 0.00045 20.7 1.1 35 50-90 33-67 (99)
89 2p7v_B Sigma-70, RNA polymeras 36.0 12 0.0004 18.9 0.8 38 52-90 6-43 (68)
90 3ulq_B Transcriptional regulat 35.5 15 0.0005 20.0 1.2 37 48-90 26-62 (90)
91 2o8x_A Probable RNA polymerase 33.9 16 0.00053 18.2 1.0 33 52-89 16-48 (70)
92 1je8_A Nitrate/nitrite respons 29.3 25 0.00087 18.5 1.5 36 49-90 19-54 (82)
93 1tty_A Sigma-A, RNA polymerase 28.1 22 0.00076 18.9 1.1 38 52-90 19-56 (87)
94 2lhi_A Calmodulin, serine/thre 27.8 55 0.0019 19.4 3.0 38 49-86 2-44 (176)
95 3c57_A Two component transcrip 26.8 35 0.0012 18.4 1.8 35 50-90 26-60 (95)
96 3o48_A Mitochondria fission 1 26.5 97 0.0033 18.5 3.8 33 50-82 16-50 (134)
97 3mzy_A RNA polymerase sigma-H 23.2 26 0.0009 20.0 0.8 17 74-90 126-142 (164)
98 3fmy_A HTH-type transcriptiona 23.0 83 0.0028 15.8 2.8 31 51-88 10-40 (73)
99 1fse_A GERE; helix-turn-helix 23.0 44 0.0015 16.6 1.6 35 49-89 9-43 (74)
100 3i5g_C Myosin catalytic light 22.6 88 0.003 18.2 3.2 36 51-86 2-44 (159)
101 4h62_V Mediator of RNA polymer 21.9 50 0.0017 14.2 1.4 14 49-62 6-19 (31)
102 1jko_C HIN recombinase, DNA-in 21.7 39 0.0013 15.2 1.2 32 52-88 6-37 (52)
103 2gqb_A Conserved hypothetical 21.6 60 0.0021 19.4 2.1 19 68-86 79-97 (130)
104 3i9v_2 NADH-quinone oxidoreduc 21.4 45 0.0015 20.8 1.7 24 66-89 37-60 (181)
105 1fi6_A EH domain protein REPS1 21.2 37 0.0013 17.9 1.1 35 52-86 3-42 (92)
106 3u0k_A Rcamp; fluorescent prot 20.6 1.5E+02 0.0052 21.3 4.4 39 48-86 292-335 (440)
107 1x3u_A Transcriptional regulat 20.2 39 0.0013 17.1 1.0 32 52-89 17-48 (79)
No 1
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.44 E-value=8.5e-14 Score=78.98 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhh----cCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEK----THYPDVVLREQLALKVDLKEERVEP 91 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qVk~ 91 (91)
..++||.||.||..|+..||..|.. ++||+..+|++||..|+|++.+||+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~Vkv 67 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKV 67 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccC
Confidence 4567889999999999999999999 9999999999999999999999874
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=4.6e-14 Score=79.91 Aligned_cols=50 Identities=42% Similarity=0.515 Sum_probs=46.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 41 PPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 41 ~~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
..++.++.||.||..|+..||..|..++||+..+|++||..|+|++.||+
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 62 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVK 62 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHee
Confidence 35567889999999999999999999999999999999999999999986
No 3
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.42 E-value=5.1e-14 Score=79.92 Aligned_cols=49 Identities=27% Similarity=0.345 Sum_probs=45.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEK-----THYPDVVLREQLALKVDLKEERVEP 91 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~-----~~yp~~~~r~~La~~l~l~~~qVk~ 91 (91)
..++||.||.||..|+..|| .|.. ++||+..+|++||..|+|++.+||+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkv 67 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKI 67 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccc
Confidence 45678899999999999999 8999 9999999999999999999999874
No 4
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.41 E-value=2.3e-13 Score=75.17 Aligned_cols=49 Identities=18% Similarity=0.362 Sum_probs=45.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
..+.++.|+.||..|+..||..|..++||+..++.+||..++|++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQIT 52 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhh
Confidence 3456788999999999999999999999999999999999999999986
No 5
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=3.2e-13 Score=74.61 Aligned_cols=49 Identities=33% Similarity=0.493 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
..+.++.|+.||..|+..||..|..++||+..++.+||..++|++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVK 52 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 3456788999999999999999999999999999999999999999986
No 6
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.39 E-value=4.2e-13 Score=74.05 Aligned_cols=49 Identities=31% Similarity=0.348 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
..+.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIV 52 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhH
Confidence 3457788999999999999999999999999999999999999999886
No 7
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.39 E-value=4.8e-13 Score=75.18 Aligned_cols=50 Identities=34% Similarity=0.537 Sum_probs=46.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 41 PPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 41 ~~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
...+.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 54 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVK 54 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHH
Confidence 34556788999999999999999999999999999999999999999986
No 8
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.7e-13 Score=74.30 Aligned_cols=48 Identities=67% Similarity=0.937 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 43 ~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
.+.++.|+.||..|+..||..|..++||+..++.+||..++|++.+|+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE 52 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHee
Confidence 456788999999999999999999999999999999999999999986
No 9
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.38 E-value=4e-13 Score=76.56 Aligned_cols=51 Identities=25% Similarity=0.462 Sum_probs=46.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7434 41 PPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVEP 91 (91)
Q Consensus 41 ~~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk~ 91 (91)
...+.++.||.||..|+..||..|..++||+..+|.+||..|||++.+|++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~v 68 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKT 68 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 345678899999999999999999999999999999999999999999863
No 10
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.38 E-value=1.1e-13 Score=78.12 Aligned_cols=51 Identities=33% Similarity=0.449 Sum_probs=47.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 40 PPPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 40 ~~~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
....+.++.||.||..|+..||..|..++||+..++++||..|+|++.+|+
T Consensus 12 ~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~ 62 (80)
T 2da3_A 12 EEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQ 62 (80)
T ss_dssp CCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhH
Confidence 335667889999999999999999999999999999999999999999886
No 11
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=3.7e-13 Score=76.11 Aligned_cols=49 Identities=53% Similarity=0.838 Sum_probs=45.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
.++.++.|+.||..|+..||..|..++||+..++.+||..++|++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQ 52 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhh
Confidence 3567889999999999999999999999999999999999999999886
No 12
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.36 E-value=4.7e-13 Score=75.72 Aligned_cols=48 Identities=56% Similarity=0.896 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 43 ~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
.+.++.||.||..|+..||..|..++||+..++.+||..|+|++.+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 52 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhh
Confidence 456788999999999999999999999999999999999999999986
No 13
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.36 E-value=3.2e-13 Score=72.96 Aligned_cols=47 Identities=28% Similarity=0.477 Sum_probs=40.1
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 44 RKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 44 ~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
+.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 48 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVK 48 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhh
Confidence 45778999999999999999999999999999999999999999886
No 14
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.36 E-value=5.7e-13 Score=74.87 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=46.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 41 PPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 41 ~~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
..++.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 58 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 34567889999999999999999999999999999999999999999986
No 15
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.36 E-value=4.1e-13 Score=72.76 Aligned_cols=47 Identities=32% Similarity=0.461 Sum_probs=42.8
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 44 RKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 44 ~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
..++.|+.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 48 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIK 48 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhh
Confidence 35778999999999999999999999999999999999999999986
No 16
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.36 E-value=3.5e-13 Score=72.57 Aligned_cols=46 Identities=33% Similarity=0.565 Sum_probs=41.1
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 45 KRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 45 ~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIK 48 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 5778999999999999999999999999999999999999999886
No 17
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.35 E-value=5.6e-13 Score=71.02 Aligned_cols=45 Identities=33% Similarity=0.528 Sum_probs=43.1
Q ss_pred CCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 46 RRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 46 rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
|+.|+.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 45 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 45 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhh
Confidence 568999999999999999999999999999999999999999886
No 18
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.35 E-value=3.8e-13 Score=74.21 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=45.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
..+.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIK 52 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 3456789999999999999999999999999999999999999999886
No 19
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.35 E-value=5.5e-13 Score=72.83 Aligned_cols=47 Identities=28% Similarity=0.485 Sum_probs=44.5
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 44 RKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 44 ~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
++++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 46788999999999999999999999999999999999999999886
No 20
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=9.5e-13 Score=74.34 Aligned_cols=48 Identities=31% Similarity=0.433 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 43 ~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
.+.++.||.||..|+..||..|..++||+..++.+||..++|++.+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 52 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhh
Confidence 456788999999999999999999999999999999999999999886
No 21
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.34 E-value=1.1e-12 Score=72.41 Aligned_cols=48 Identities=27% Similarity=0.391 Sum_probs=44.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 43 ~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
...++.|+.||..|+..||..|..++||+..++.+||..++|++.+|+
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 52 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhh
Confidence 346678999999999999999999999999999999999999999886
No 22
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.34 E-value=8.3e-13 Score=72.38 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEK-THYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
.+.++|.||.|+.+|+..|+..|+. ++||+..+|+.||..+||++.+||
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~Iq 53 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTII 53 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 4567889999999999999999999 999999999999999999999886
No 23
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.34 E-value=1.1e-12 Score=72.96 Aligned_cols=48 Identities=23% Similarity=0.399 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 43 ~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
.+.++.|+.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVT 52 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHH
Confidence 456788999999999999999999999999999999999999999986
No 24
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.34 E-value=7.7e-13 Score=73.75 Aligned_cols=49 Identities=61% Similarity=0.913 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
.+++++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 54 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 54 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHH
Confidence 4456788999999999999999999999999999999999999999886
No 25
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.33 E-value=9.8e-13 Score=76.43 Aligned_cols=51 Identities=29% Similarity=0.504 Sum_probs=46.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7434 41 PPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVEP 91 (91)
Q Consensus 41 ~~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk~ 91 (91)
...+.++.||.||..|+..||..|..++||+..+|.+||..+||++.+||+
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 63 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKT 63 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhccc
Confidence 345567889999999999999999999999999999999999999999873
No 26
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.32 E-value=9.4e-13 Score=72.35 Aligned_cols=46 Identities=33% Similarity=0.452 Sum_probs=44.0
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 45 KRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 45 ~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
+++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 47 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhh
Confidence 5778999999999999999999999999999999999999999886
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.32 E-value=8.6e-13 Score=70.80 Aligned_cols=45 Identities=40% Similarity=0.558 Sum_probs=42.5
Q ss_pred CCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 46 RRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 46 rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
|+.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 46 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 46 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHH
Confidence 578999999999999999999999999999999999999999886
No 28
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.32 E-value=1e-12 Score=69.80 Aligned_cols=46 Identities=30% Similarity=0.538 Sum_probs=43.6
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 45 KRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 45 ~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
+++.|+.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVK 47 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHH
Confidence 4678999999999999999999999999999999999999999886
No 29
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.32 E-value=6.1e-13 Score=71.55 Aligned_cols=48 Identities=15% Similarity=0.247 Sum_probs=38.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 43 ~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
++.++.|+.||..|+..||..|..++||+..++.+||..+||++.||+
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~ 50 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVR 50 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 456788999999999999999999999999999999999999999886
No 30
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.31 E-value=1.1e-12 Score=74.26 Aligned_cols=49 Identities=45% Similarity=0.845 Sum_probs=45.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
.++.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 63 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 63 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHH
Confidence 4567889999999999999999999999999999999999999999886
No 31
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.31 E-value=9.1e-13 Score=72.41 Aligned_cols=46 Identities=30% Similarity=0.551 Sum_probs=43.8
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 45 KRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 45 ~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
+++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 47 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVK 47 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhH
Confidence 4678999999999999999999999999999999999999999886
No 32
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.30 E-value=8.3e-13 Score=72.59 Aligned_cols=46 Identities=26% Similarity=0.384 Sum_probs=43.8
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 45 KRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 45 ~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
+++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 47 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhh
Confidence 4678999999999999999999999999999999999999999986
No 33
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.30 E-value=9.8e-13 Score=75.61 Aligned_cols=49 Identities=27% Similarity=0.347 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7434 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVEP 91 (91)
Q Consensus 43 ~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk~ 91 (91)
.+.++.||.||..|+..||..|..++||+..+|.+||..+||++.+|++
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~v 74 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKI 74 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhH
Confidence 4567889999999999999999999999999999999999999999863
No 34
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.30 E-value=1.2e-12 Score=76.36 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=42.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
....++.|+.||..|+..||..|..++||+..++++||..|||++.|||
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 70 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIV 70 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHee
Confidence 3445678999999999999999999999999999999999999999986
No 35
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.29 E-value=1.5e-12 Score=73.13 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7434 48 HRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVEP 91 (91)
Q Consensus 48 ~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk~ 91 (91)
.|+.||..|+.+||..|..++||+..+|++||..+||++.|||+
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkv 49 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQ 49 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 46679999999999999999999999999999999999999873
No 36
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=9.9e-13 Score=74.34 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhhc----CCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEKT----HYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qVk 90 (91)
.++.++.||.||..|+..||..|..+ +||+..++++||..+||++.+|+
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~ 57 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVR 57 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhh
Confidence 45678899999999999999999999 99999999999999999999986
No 37
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.28 E-value=1.6e-12 Score=73.70 Aligned_cols=48 Identities=29% Similarity=0.420 Sum_probs=41.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 43 ~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
...++.||.||..|+..||..|..++||+..+|++||..+||++.+|+
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 65 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIK 65 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 346778999999999999999999999999999999999999999986
No 38
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.28 E-value=2.3e-12 Score=70.54 Aligned_cols=45 Identities=42% Similarity=0.697 Sum_probs=43.2
Q ss_pred CCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 46 RRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 46 rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
|+.|+.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 46 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQ 46 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhh
Confidence 678999999999999999999999999999999999999999886
No 39
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.27 E-value=8.1e-13 Score=72.57 Aligned_cols=47 Identities=51% Similarity=0.820 Sum_probs=44.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 44 RKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 44 ~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
+.++.||.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVR 48 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 46788999999999999999999999999999999999999999886
No 40
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.27 E-value=1.6e-12 Score=76.00 Aligned_cols=49 Identities=31% Similarity=0.386 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7434 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVEP 91 (91)
Q Consensus 43 ~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk~ 91 (91)
.+.++.||.||..|+..||..|..++||+..+|.+||..|||++.+||+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~v 80 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKI 80 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHH
Confidence 4567889999999999999999999999999999999999999999873
No 41
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=7.9e-12 Score=69.99 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=42.9
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 45 KRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 45 ~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
+.+.|+.||..|+..||..|..++||+..++++||..+||++.+|+
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~ 53 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVR 53 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhh
Confidence 4446899999999999999999999999999999999999999886
No 42
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.22 E-value=7.5e-12 Score=69.64 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=43.7
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 45 KRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 45 ~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
.++.|+.||..|+..||..|..++||+..++++||..+||++.+||
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 51 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIK 51 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHee
Confidence 4678999999999999999999999999999999999999999886
No 43
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.21 E-value=6.1e-12 Score=67.43 Aligned_cols=43 Identities=51% Similarity=0.839 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 48 HRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 48 ~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
.|+.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 44 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 44 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 5789999999999999999999999999999999999999886
No 44
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.20 E-value=6.8e-12 Score=69.54 Aligned_cols=45 Identities=31% Similarity=0.394 Sum_probs=42.3
Q ss_pred CCCCCCCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 46 RRHRTIFTEEQLEQLEATFEK-THYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 46 rr~Rt~~t~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
.+.|+.||..|+..||..|.. ++||+..++.+||..+||++.+|+
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~ 47 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 47 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 457899999999999999996 999999999999999999999986
No 45
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.2e-11 Score=69.18 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 47 RHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 47 r~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
++|+.||..|+..||..|..++||+..+|.+||..++|++.+|+
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREID 52 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhh
Confidence 35667999999999999999999999999999999999999986
No 46
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.20 E-value=8.3e-12 Score=69.39 Aligned_cols=46 Identities=30% Similarity=0.323 Sum_probs=42.7
Q ss_pred CCCCCCCCHHHHHHHHHhhhh-cCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7434 46 RRHRTIFTEEQLEQLEATFEK-THYPDVVLREQLALKVDLKEERVEP 91 (91)
Q Consensus 46 rr~Rt~~t~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l~l~~~qVk~ 91 (91)
++.||.||..|+..||..|.. ++||+..++.+||..+||++.+|++
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~ 49 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 49 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 457899999999999999995 9999999999999999999999863
No 47
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.19 E-value=1.9e-11 Score=67.89 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=44.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 43 KRKRRHRTIFTEEQLEQLEATFEK---THYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 43 ~~~rr~Rt~~t~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
.+.++.|+.|+..|+..||..|.. ++||+..++++||..+||++.||+
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~ 55 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVN 55 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 456778999999999999999976 999999999999999999999886
No 48
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.16 E-value=1.9e-11 Score=71.13 Aligned_cols=49 Identities=27% Similarity=0.411 Sum_probs=45.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcC---------------CCCCCCC
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVD---------------LKEERVE 90 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~---------------l~~~qVk 90 (91)
..+.++.|+.|+..|+..||..|..++||+..+|++||..++ |++.+|+
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~ 67 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 67 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHH
Confidence 356788999999999999999999999999999999999999 9998886
No 49
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.15 E-value=1.5e-11 Score=65.10 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 50 TIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 50 t~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
|.||..|+..||..|..++||+..+|.+||..+||++.+||
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 42 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVK 42 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhh
Confidence 67999999999999999999999999999999999999986
No 50
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.15 E-value=1.6e-11 Score=66.56 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=43.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 44 RKRRHRTIFTEEQLEQLEATF---EKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 44 ~~rr~Rt~~t~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
..++.|+.|+..|+..||..| ..++||+..++.+||..+||++.||+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~ 51 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 51 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 356789999999999999999 89999999999999999999999886
No 51
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.15 E-value=1.3e-11 Score=77.97 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=42.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVEP 91 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk~ 91 (91)
..++||.||.||..|+..||..|..++||+..+|.+||..+||++.+||+
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 147 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRV 147 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhH
Confidence 34678899999999999999999999999999999999999999999873
No 52
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.13 E-value=2.1e-11 Score=71.57 Aligned_cols=49 Identities=27% Similarity=0.347 Sum_probs=40.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHh------------------cC---CCCCCCC
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALK------------------VD---LKEERVE 90 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~------------------l~---l~~~qVk 90 (91)
.++.|+.|+.|+..|+..||..|..++||+..+|++||.. || |++.+|+
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~ 75 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVY 75 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceee
Confidence 4567889999999999999999999999999999999999 88 9998876
No 53
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.13 E-value=3.4e-11 Score=66.83 Aligned_cols=45 Identities=31% Similarity=0.459 Sum_probs=42.9
Q ss_pred CCCCCCCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 46 RRHRTIFTEEQLEQLEATF---EKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 46 rr~Rt~~t~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
|+.|+.||..|+..|+..| ..++||+..++.+||..+||++.||+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~ 49 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 49 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 6789999999999999999 89999999999999999999999886
No 54
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=5.2e-11 Score=70.16 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=38.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhc
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKV 82 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l 82 (91)
.++.||.|+.|+..|+..||..|..++||+..+|++||..+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~l 43 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEEC 43 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999
No 55
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.12 E-value=2.4e-11 Score=75.77 Aligned_cols=50 Identities=26% Similarity=0.347 Sum_probs=43.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVEP 91 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk~ 91 (91)
..++|+.||.||..|+..||..|..++||+..+|.+||..+||++.+|++
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 133 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRV 133 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchh
Confidence 45567889999999999999999999999999999999999999999873
No 56
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.10 E-value=7e-11 Score=73.89 Aligned_cols=49 Identities=35% Similarity=0.518 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
..++|+.||.||..|+..||..|..++||+..+|.+||..+||++.+|+
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 138 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVR 138 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhH
Confidence 4567788999999999999999999999999999999999999999986
No 57
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.10 E-value=1e-10 Score=66.48 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=43.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 43 KRKRRHRTIFTEEQLEQLEATFEK---THYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 43 ~~~rr~Rt~~t~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
.+.++.|+.|+..|+..|+..|.. ++||+..+|++||..+||++.||+
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~ 55 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQIS 55 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 356778999999999999999987 699999999999999999999986
No 58
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.09 E-value=2.5e-11 Score=77.00 Aligned_cols=50 Identities=30% Similarity=0.274 Sum_probs=38.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVEP 91 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk~ 91 (91)
..++||.||.||..|+..||..|..++||+..+|.+||..++|++.+||+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~v 145 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRV 145 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhh
Confidence 45678899999999999999999999999999999999999999999873
No 59
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.09 E-value=5.9e-11 Score=67.85 Aligned_cols=45 Identities=31% Similarity=0.459 Sum_probs=42.3
Q ss_pred CCCCCCCCHHHHHHHHHhh---hhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 46 RRHRTIFTEEQLEQLEATF---EKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 46 rr~Rt~~t~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
|+.|+.|+..|+..||..| ..++||+..++.+||..+||++.||+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~ 49 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 49 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 6789999999999999999 89999999999999999999999886
No 60
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.09 E-value=1.1e-10 Score=67.32 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7434 51 IFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVEP 91 (91)
Q Consensus 51 ~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk~ 91 (91)
.||..|+.+||..|..++||+..+|.+||..|||++.|||+
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkv 57 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDA 57 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCee
Confidence 78999999999999999999999999999999999999974
No 61
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.08 E-value=8.4e-11 Score=67.31 Aligned_cols=48 Identities=27% Similarity=0.305 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 43 KRKRRHRTIFTEEQLEQLEATFEK---THYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 43 ~~~rr~Rt~~t~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
.++++.|+.|+..|+..||..|.. ++||+..++.+||..+||++.||+
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~ 75 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 75 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 345567999999999999999999 999999999999999999999886
No 62
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=67.17 Aligned_cols=41 Identities=22% Similarity=0.388 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7434 51 IFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVEP 91 (91)
Q Consensus 51 ~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk~ 91 (91)
.||..|+..||..|..++||+..+|++||..++|++.+|++
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~v 59 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDS 59 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccH
Confidence 48999999999999999999999999999999999999873
No 63
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.07 E-value=9e-11 Score=62.74 Aligned_cols=42 Identities=29% Similarity=0.340 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 49 RTIFTEEQLEQLEATFEK---THYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 49 Rt~~t~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
|+.||..|+..||..|.. ++||+..++.+||..+||++.||+
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~ 46 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 46 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 678999999999999999 999999999999999999999886
No 64
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.05 E-value=7e-11 Score=74.26 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=45.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7434 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVEP 91 (91)
Q Consensus 43 ~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk~ 91 (91)
.++||.||.|+..|+..||..|..++||+..+|.+||..++|++.+||+
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~v 142 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRV 142 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheee
Confidence 4677889999999999999999999999999999999999999999873
No 65
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.05 E-value=8.8e-11 Score=74.23 Aligned_cols=49 Identities=22% Similarity=0.371 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 42 PKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 42 ~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
..+.||.||.||..|+..||..|..++||+..+|.+||..+||++.||+
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~ 142 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVS 142 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 3456889999999999999999999999999999999999999999986
No 66
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.00 E-value=5.7e-11 Score=65.97 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=41.4
Q ss_pred CCCCCCCCHHHHHHHHHhh-hhcCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7434 46 RRHRTIFTEEQLEQLEATF-EKTHYPDVVLREQLALKVDLKEERVEP 91 (91)
Q Consensus 46 rr~Rt~~t~~Q~~~Le~~F-~~~~yp~~~~r~~La~~l~l~~~qVk~ 91 (91)
.+.++.++..|+..||..| ..++||+..+|.+||..+||++.|||+
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqv 55 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQC 55 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcch
Confidence 4456677889999999999 999999999999999999999999873
No 67
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=98.98 E-value=2.9e-10 Score=64.60 Aligned_cols=44 Identities=27% Similarity=0.316 Sum_probs=40.4
Q ss_pred CCCCCCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 47 RHRTIFTEEQLEQLEATFEK---THYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 47 r~Rt~~t~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
+.|+.|+..|+..||..|.. ++||+..++.+||..+||++.||+
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~ 50 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 50 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcc
Confidence 34666999999999999999 999999999999999999999886
No 68
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=98.97 E-value=2.1e-10 Score=62.58 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=36.9
Q ss_pred CHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 53 TEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 53 t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
|..|+.+||..|..++||+..+|.+||..+||++.+||
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVk 49 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIK 49 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhh
Confidence 78999999999999999999999999999999999986
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=3e-10 Score=61.67 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7434 49 RTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVEP 91 (91)
Q Consensus 49 Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk~ 91 (91)
+..++..|+..||..|..++||+..+|.+||..+||++.+||+
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqv 49 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKK 49 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCc
Confidence 3456799999999999999999999999999999999999873
No 70
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.92 E-value=4.7e-10 Score=61.82 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7434 49 RTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVEP 91 (91)
Q Consensus 49 Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk~ 91 (91)
-..+|..|+..||..|..++||+..+|.+||..+||++.|||+
T Consensus 8 ~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqv 50 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 50 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheee
Confidence 3568999999999999999999999999999999999999873
No 71
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.87 E-value=2.3e-10 Score=74.28 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=36.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcC
Q psy7434 41 PPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVD 83 (91)
Q Consensus 41 ~~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 83 (91)
..++.||.|+.|+..|+..||..|..++||+..+|++||..++
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~ 153 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECN 153 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC
Confidence 3466788999999999999999999999999999999999999
No 72
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.87 E-value=8.8e-10 Score=72.68 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=37.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcC
Q psy7434 40 PPPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVD 83 (91)
Q Consensus 40 ~~~~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~ 83 (91)
...++.||.|+.|+..|+..|+..|..++||+..+|++||..++
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n 180 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECN 180 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHC
Confidence 44567789999999999999999999999999999999999887
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.78 E-value=1.3e-09 Score=59.15 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=34.6
Q ss_pred HHHHHHHHHhh-hhcCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7434 54 EEQLEQLEATF-EKTHYPDVVLREQLALKVDLKEERVEP 91 (91)
Q Consensus 54 ~~Q~~~Le~~F-~~~~yp~~~~r~~La~~l~l~~~qVk~ 91 (91)
..|+.+||..| ..++||+..+|.+||..|+|++.|||+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkv 47 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQR 47 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHH
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHH
Confidence 34799999999 679999999999999999999999974
No 74
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=98.62 E-value=1.7e-08 Score=55.08 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHhhh---hcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 51 IFTEEQLEQLEATFE---KTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 51 ~~t~~Q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
.|+..|+..|+..|. .++||+..++.+||..+||++.||+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~ 46 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVN 46 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhh
Confidence 689999999999999 9999999999999999999999886
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.32 E-value=1.8e-07 Score=65.08 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=42.6
Q ss_pred CCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCCC
Q psy7434 46 RRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVEP 91 (91)
Q Consensus 46 rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk~ 91 (91)
++.++.++..|+.+||+.|+.++||+..+|++||.++||+++|||+
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~ 411 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRV 411 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhH
Confidence 4457789999999999999999999999999999999999999873
No 76
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=6.5e-07 Score=49.15 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 54 EEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 54 ~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
.+|+..|+..|..|++|+..++..||..+||++..||
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVr 50 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVK 50 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 5689999999999999999999999999999998876
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.05 E-value=2e-06 Score=49.31 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHhhhh---cCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 50 TIFTEEQLEQLEATFEK---THYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 50 t~~t~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
..|+..+...|+..|.. ++||+..+|.+||..+||++.||+
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~ 53 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVC 53 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 46899999999999987 999999999999999999999986
No 78
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=83.82 E-value=0.008 Score=37.41 Aligned_cols=30 Identities=7% Similarity=-0.044 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhhcCCCCH
Q psy7434 43 KRKRRHRTIFTEEQLEQLEATFEKTHYPDV 72 (91)
Q Consensus 43 ~~~rr~Rt~~t~~Q~~~Le~~F~~~~yp~~ 72 (91)
.+.+|.||.|+..|+..|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456788999999999999999999999853
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.66 E-value=2 Score=23.15 Aligned_cols=33 Identities=18% Similarity=0.102 Sum_probs=28.7
Q ss_pred HHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 58 EQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 58 ~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
+.|+..|...+.+....-..|+.+..|+..|||
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvk 51 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASRLSTQQVL 51 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhCCCHHHHH
Confidence 458999999999999999999999999887775
No 80
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=59.59 E-value=8.5 Score=20.71 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=24.6
Q ss_pred CCCCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCC
Q psy7434 46 RRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEER 88 (91)
Q Consensus 46 rr~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~q 88 (91)
++.+..|+..+.......+... . ...++|..+|++...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sT 54 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPEST 54 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHH
Confidence 3456678998866655555432 2 245789999987643
No 81
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=50.15 E-value=36 Score=19.84 Aligned_cols=38 Identities=11% Similarity=0.188 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHhcCCCC
Q psy7434 49 RTIFTEEQLEQLEATFEK-----THYPDVVLREQLALKVDLKE 86 (91)
Q Consensus 49 Rt~~t~~Q~~~Le~~F~~-----~~yp~~~~r~~La~~l~l~~ 86 (91)
+..+|..|+.+|...|.. +-+++..+-..+.+.+|...
T Consensus 7 ~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 49 (153)
T 3i5g_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP 49 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc
Confidence 456999999999999864 45788888777777887654
No 82
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=46.71 E-value=18 Score=17.73 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCC
Q psy7434 49 RTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERV 89 (91)
Q Consensus 49 Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 89 (91)
|..||.++.......+... ........++|..+|++...|
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl 42 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQI 42 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHH
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHH
Confidence 3468888877774444433 221112458899999976543
No 83
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=46.57 E-value=13 Score=21.14 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCC
Q psy7434 48 HRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEER 88 (91)
Q Consensus 48 ~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~q 88 (91)
.|..||.++...+-..+..+.... ..++|..+|++...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~st 41 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPST 41 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHH
Confidence 467899999988877765454443 33678888887643
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=41.22 E-value=16 Score=16.34 Aligned_cols=34 Identities=9% Similarity=0.108 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCC
Q psy7434 51 IFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERV 89 (91)
Q Consensus 51 ~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 89 (91)
.++..+...+...+... + ...++|..+|++...|
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv 38 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCI 38 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHH
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHH
Confidence 45676665555555433 2 3558899999886544
No 85
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=40.32 E-value=10 Score=20.42 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 52 FTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 52 ~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
++..+...|...|.... .-.++|..+|+++..|+
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~ 71 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVK 71 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHH
Confidence 45666666665443332 45688999999886654
No 86
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=39.48 E-value=44 Score=19.59 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=27.4
Q ss_pred CCCCCCCCHHHHHHHHHhh-hhcCCCCHHHHHHHHH----hc--CCCCCCC
Q psy7434 46 RRHRTIFTEEQLEQLEATF-EKTHYPDVVLREQLAL----KV--DLKEERV 89 (91)
Q Consensus 46 rr~Rt~~t~~Q~~~Le~~F-~~~~yp~~~~r~~La~----~l--~l~~~qV 89 (91)
++.|..+|..|...+-..+ ..+.-. ...+||. .+ +++...|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~---~q~~la~wa~~~f~~~is~sti 53 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRS---GQQDLIEWFREKFGKDISQPSV 53 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCC---CHHHHHHHHHHHHSSCCSSSST
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHCCCCcHHHH
Confidence 4578889999999998888 444433 2445666 66 5555444
No 87
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=38.41 E-value=11 Score=19.29 Aligned_cols=39 Identities=13% Similarity=0.064 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 51 IFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 51 ~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
.++..+...+...|....- ....-.++|..+|+++..|+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~ 48 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIR 48 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHH
Confidence 3677788888777641000 01134588999999886653
No 88
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=36.32 E-value=13 Score=20.71 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 50 TIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 50 t~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
..+|..+...|...+.-. .-.++|..|++++..|+
T Consensus 33 ~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~ 67 (99)
T 1p4w_A 33 KRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTIS 67 (99)
T ss_dssp SSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHH
Confidence 458899999887755322 34689999999886654
No 89
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=35.96 E-value=12 Score=18.90 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 52 FTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 52 ~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
++..+...|...|-.+.+- ...-.++|..+|+++..|+
T Consensus 6 L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~ 43 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIR 43 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHH
Confidence 5677777777766211111 1134688999999886653
No 90
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=35.46 E-value=15 Score=20.05 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=25.4
Q ss_pred CCCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 48 HRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 48 ~Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
....+|..+...|.-...-. ...++|..|++++..|+
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~ 62 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIE 62 (90)
T ss_dssp ---CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHH
T ss_pred cccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHH
Confidence 45568999999888766322 46688999999886654
No 91
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=33.87 E-value=16 Score=18.16 Aligned_cols=33 Identities=18% Similarity=-0.033 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCC
Q psy7434 52 FTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERV 89 (91)
Q Consensus 52 ~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 89 (91)
++..+...+...|.... .-.++|..+|+++..|
T Consensus 16 L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv 48 (70)
T 2o8x_A 16 LTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTI 48 (70)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHH
Confidence 56777777766543332 3568899999987655
No 92
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=29.33 E-value=25 Score=18.47 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 49 RTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 49 Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
-..++..+...|...+. . ..-.++|..+|+++..|+
T Consensus 19 ~~~Lt~~e~~vl~l~~~-g-----~s~~eIA~~l~is~~tV~ 54 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQ-G-----LPNKMIARRLDITESTVK 54 (82)
T ss_dssp GGGSCHHHHHHHHHHTT-T-----CCHHHHHHHHTSCHHHHH
T ss_pred HccCCHHHHHHHHHHHc-C-----CCHHHHHHHHCcCHHHHH
Confidence 34578888888877432 2 145688999999876553
No 93
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=28.06 E-value=22 Score=18.88 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 52 FTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 52 ~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
++..+...+...|....- ....-.++|..+|++...|+
T Consensus 19 L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~ 56 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIR 56 (87)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHH
Confidence 566777777766541100 01135588999999876654
No 94
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=27.78 E-value=55 Score=19.44 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHhcCCCC
Q psy7434 49 RTIFTEEQLEQLEATFEK-----THYPDVVLREQLALKVDLKE 86 (91)
Q Consensus 49 Rt~~t~~Q~~~Le~~F~~-----~~yp~~~~r~~La~~l~l~~ 86 (91)
.+.+|..|+.+|...|.. +-+++..+-..+...+|+..
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 44 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSP 44 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCh
Confidence 457889999999988853 44778777777777777654
No 95
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=26.75 E-value=35 Score=18.44 Aligned_cols=35 Identities=23% Similarity=0.188 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCCC
Q psy7434 50 TIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERVE 90 (91)
Q Consensus 50 t~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk 90 (91)
..++..+...|...+... .-.++|..+|+++..|+
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~ 60 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVK 60 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHH
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHH
Confidence 357888888888753332 34688999999876553
No 96
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=26.50 E-value=97 Score=18.48 Aligned_cols=33 Identities=18% Similarity=0.094 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHhhhh--cCCCCHHHHHHHHHhc
Q psy7434 50 TIFTEEQLEQLEATFEK--THYPDVVLREQLALKV 82 (91)
Q Consensus 50 t~~t~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l 82 (91)
..++..++..|+..|.. +.+++..++.++|-.|
T Consensus 16 ~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~L 50 (134)
T 3o48_A 16 EPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGL 50 (134)
T ss_dssp CCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 46789999999999965 6788999998888665
No 97
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=23.17 E-value=26 Score=20.02 Aligned_cols=17 Identities=6% Similarity=0.100 Sum_probs=13.1
Q ss_pred HHHHHHHhcCCCCCCCC
Q psy7434 74 LREQLALKVDLKEERVE 90 (91)
Q Consensus 74 ~r~~La~~l~l~~~qVk 90 (91)
.-.++|..+|++...|+
T Consensus 126 s~~EIA~~lgis~~tV~ 142 (164)
T 3mzy_A 126 SYREIATILSKNLKSID 142 (164)
T ss_dssp CHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHCCCHHHHH
Confidence 46688999999886654
No 98
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=22.99 E-value=83 Score=15.76 Aligned_cols=31 Identities=3% Similarity=-0.038 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCC
Q psy7434 51 IFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEER 88 (91)
Q Consensus 51 ~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~q 88 (91)
.++...+..+...... ...+||..+|++...
T Consensus 10 ~~~g~~lr~~R~~~gl-------tq~elA~~~gvs~~t 40 (73)
T 3fmy_A 10 TVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNA 40 (73)
T ss_dssp CCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTH
T ss_pred CCCHHHHHHHHHHcCC-------CHHHHHHHhCcCHHH
Confidence 4677777666543322 356778888877654
No 99
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=22.98 E-value=44 Score=16.55 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCC
Q psy7434 49 RTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERV 89 (91)
Q Consensus 49 Rt~~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 89 (91)
-..++..+...|...+. .+ .-.++|..+|++...|
T Consensus 9 ~~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV 43 (74)
T 1fse_A 9 KPLLTKREREVFELLVQ--DK----TTKEIASELFISEKTV 43 (74)
T ss_dssp CCCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHH
T ss_pred CCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHH
Confidence 34578888888877422 22 3457899999887554
No 100
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=22.63 E-value=88 Score=18.20 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHhhhh-----c--CCCCHHHHHHHHHhcCCCC
Q psy7434 51 IFTEEQLEQLEATFEK-----T--HYPDVVLREQLALKVDLKE 86 (91)
Q Consensus 51 ~~t~~Q~~~Le~~F~~-----~--~yp~~~~r~~La~~l~l~~ 86 (91)
.+|..|+.+|...|.. + -+++..+-..+-+.||+..
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~ 44 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP 44 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCC
Confidence 4789999999988752 2 3677666666667777654
No 101
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=21.86 E-value=50 Score=14.23 Aligned_cols=14 Identities=43% Similarity=0.515 Sum_probs=8.2
Q ss_pred CCCCCHHHHHHHHH
Q psy7434 49 RTIFTEEQLEQLEA 62 (91)
Q Consensus 49 Rt~~t~~Q~~~Le~ 62 (91)
-|+|...|+.+|..
T Consensus 6 vtrfdekqieelld 19 (31)
T 4h62_V 6 VTRFDEKQIEELLD 19 (31)
T ss_dssp ----CHHHHHHHHH
T ss_pred cccccHHHHHHHHH
Confidence 46788999988864
No 102
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=21.72 E-value=39 Score=15.19 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCC
Q psy7434 52 FTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEER 88 (91)
Q Consensus 52 ~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~q 88 (91)
++..+...+...+... . ...++|..+|++...
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~T 37 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVST 37 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHH
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHH
Confidence 4444555444444433 2 345789999987643
No 103
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=21.65 E-value=60 Score=19.36 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=15.8
Q ss_pred CCCCHHHHHHHHHhcCCCC
Q psy7434 68 HYPDVVLREQLALKVDLKE 86 (91)
Q Consensus 68 ~yp~~~~r~~La~~l~l~~ 86 (91)
--.+...|.+||..|+++.
T Consensus 79 lDsSl~~RkeLA~eL~~~~ 97 (130)
T 2gqb_A 79 IDSSLSARKELAKELGYSG 97 (130)
T ss_dssp CCCSHHHHHHHHHHHTCCC
T ss_pred CCccHHHHHHHHHHhCCCC
Confidence 3467889999999999875
No 104
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=21.45 E-value=45 Score=20.78 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=20.4
Q ss_pred hcCCCCHHHHHHHHHhcCCCCCCC
Q psy7434 66 KTHYPDVVLREQLALKVDLKEERV 89 (91)
Q Consensus 66 ~~~yp~~~~r~~La~~l~l~~~qV 89 (91)
...|++......+|..|+++..+|
T Consensus 37 ~~G~l~~~~~~~iA~~l~l~~~~V 60 (181)
T 3i9v_2 37 EEGWIRPERIEEIARLVGTTPTEV 60 (181)
T ss_dssp HHSSCCHHHHHHHHHHHTSCHHHH
T ss_pred HhCCCCHHHHHHHHHHhCcCHHHH
Confidence 457999999999999999997654
No 105
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=21.20 E-value=37 Score=17.95 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHhhhh-----cCCCCHHHHHHHHHhcCCCC
Q psy7434 52 FTEEQLEQLEATFEK-----THYPDVVLREQLALKVDLKE 86 (91)
Q Consensus 52 ~t~~Q~~~Le~~F~~-----~~yp~~~~r~~La~~l~l~~ 86 (91)
++..+...+...|.. +-+++..+-..+...+++++
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~ 42 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPI 42 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCH
Confidence 466777777777653 33566655555555556553
No 106
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=20.56 E-value=1.5e+02 Score=21.26 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=30.6
Q ss_pred CCCCCCHHHHHHHHHhhh-----hcCCCCHHHHHHHHHhcCCCC
Q psy7434 48 HRTIFTEEQLEQLEATFE-----KTHYPDVVLREQLALKVDLKE 86 (91)
Q Consensus 48 ~Rt~~t~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~ 86 (91)
.+..++.+|+.+|+..|. .+-+++..+-..+-..+|+..
T Consensus 292 s~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~ 335 (440)
T 3u0k_A 292 TRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP 335 (440)
T ss_dssp BCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCC
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCC
Confidence 478899999999999985 355788887777777777653
No 107
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=20.24 E-value=39 Score=17.11 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHhhhhcCCCCHHHHHHHHHhcCCCCCCC
Q psy7434 52 FTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERV 89 (91)
Q Consensus 52 ~t~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV 89 (91)
++..+...|...+. .+ .-.++|..+|+++..|
T Consensus 17 L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV 48 (79)
T 1x3u_A 17 LSERERQVLSAVVA--GL----PNKSIAYDLDISPRTV 48 (79)
T ss_dssp HCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHH
T ss_pred CCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHH
Confidence 45556666655322 11 3457888888887655
Done!