RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7434
(91 letters)
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 61.7 bits (151), Expect = 1e-14
Identities = 25/44 (56%), Positives = 29/44 (65%)
Query: 46 RRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERV 89
RR RT FT EQLE+LE FEK YP RE+LA K+ L E +V
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQV 44
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved
in the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 56.9 bits (138), Expect = 1e-12
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 46 RRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERV 89
RR RT FT EQLE+LE FEK YP RE+LA ++ L E +V
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQV 44
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 55.3 bits (134), Expect = 4e-12
Identities = 25/45 (55%), Positives = 30/45 (66%)
Query: 45 KRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEERV 89
KRR RT FT EQLE+LE F+K YP RE+LA K+ L E +V
Sbjct: 1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQV 45
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 44.3 bits (105), Expect = 4e-07
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 22 MTHAAATIAAMAASQHSAPPPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLREQLALK 81
AA + + Q + PPK KRR RT T+EQL LE FE YP + R +L+L
Sbjct: 31 EVEAADSEMKLERKQDGSSPPKSKRR-RT--TDEQLMVLEREFEINPYPSSITRIKLSLL 87
Query: 82 VDLKEERV 89
+++ + V
Sbjct: 88 LNMPPKSV 95
>gnl|CDD|222830 PHA01745, PHA01745, hypothetical protein.
Length = 306
Score = 33.0 bits (75), Expect = 0.010
Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 46 RRHRTIFTEEQLEQLEATFEKTHYP 70
R+ RT+ T+E+ E L+ +KT++P
Sbjct: 207 RKARTL-TKEEEESLKEFLDKTNFP 230
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 29.2 bits (65), Expect = 0.25
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 35 SQHSAPPPKRKRRHRTIFTE 54
S APPPK++RR + FTE
Sbjct: 91 STEPAPPPKKRRRRKRFFTE 110
>gnl|CDD|240436 PTZ00486, PTZ00486, apyrase Superfamily; Provisional.
Length = 352
Score = 27.3 bits (61), Expect = 0.93
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 1 MRIATGASMVAVAYPNLYPGYMTHAAATIAAM 32
+R A G S YPGY+ H A T + +
Sbjct: 221 IRNALGIS---------YPGYIIHEAVTYSNL 243
>gnl|CDD|227938 COG5651, COG5651, PPE-repeat proteins [Cell motility and
secretion].
Length = 490
Score = 27.6 bits (61), Expect = 0.94
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 7 ASMVAVAYPNLYPGYMTHAAATIAAMAASQHSA 39
A+M A A P Y ++T AA AA AA +A
Sbjct: 63 AAMAAAAAP--YVAWLTTTAAQAAAAAAQAEAA 93
>gnl|CDD|222226 pfam13565, HTH_32, Homeodomain-like domain.
Length = 74
Score = 26.2 bits (58), Expect = 1.3
Identities = 7/36 (19%), Positives = 10/36 (27%)
Query: 41 PPKRKRRHRTIFTEEQLEQLEATFEKTHYPDVVLRE 76
R R E+L + T + Y D
Sbjct: 17 LVHRPGRPSNHRYPEELRAIVLTLIREPYADFGPTL 52
>gnl|CDD|212056 cd11487, SLC5sbd_SGLT2, Na(+)/glucose cotransporter SGLT2 and
related proteins; solute-binding domain. Human SGLT2
(hSGLT2) is a high-capacity, low-affinity glucose
transporter, that plays an important role in renal
glucose reabsorption. It is encoded by the SLC5A2 gene
and expressed almost exclusively in renal proximal
tubule cells. Mutations in hSGLT2 cause Familial Renal
Glucosuria (FRG), a rare autosomal defect in glucose
transport. hSGLT2 is a major drug target for regulating
blood glucose levels in diabetes. hSGLT2 is predicted to
have 14 membrane-spanning regions. This subgroup belongs
to the solute carrier 5 (SLC5) transporter family.
Length = 583
Score = 27.2 bits (60), Expect = 1.4
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 40 PPPKRKRRHRTIFT-----EEQLEQLEATFEKTHYPDVV 73
PP RK HR +F+ EE+ + L E + VV
Sbjct: 526 PPIPRKHLHRLVFSLRHSKEEREDLLPDISEDPKWARVV 564
>gnl|CDD|152354 pfam11919, DUF3437, Domain of unknown function (DUF3437). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 142 to 163 amino acids in length.
Length = 89
Score = 26.0 bits (58), Expect = 1.7
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 21/81 (25%)
Query: 6 GASMVAVAYPNLYPGYMTHAAATIAAMAASQHSAPPP------------KRKRR-----H 48
G + +A+P P ++ T+A A P P K+ +
Sbjct: 12 GLGALVLAFPYEVPPWIPKVLTTLARHA----RDPGPIGKTVKKTLSEFKKTHQDTWHED 67
Query: 49 RTIFTEEQLEQLEATFEKTHY 69
+ FTE+QLE LE ++Y
Sbjct: 68 KKKFTEDQLEDLEGVLWPSYY 88
>gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW. This
family consists of several bacterial and one archaeal
methionine biosynthesis MetW proteins. Biosynthesis of
methionine from homoserine in Pseudomonas putida takes
place in three steps. The first step is the acylation
of homoserine to yield an acyl-L-homoserine. This
reaction is catalyzed by the products of the metXW
genes and is equivalent to the first step in
enterobacteria, gram-positive bacteria and fungi,
except that in these microorganisms the reaction is
catalyzed by a single polypeptide (the product of the
metA gene in Escherichia coli and the met5 gene product
in Neurospora crassa). In Pseudomonas putida, as in
gram-positive bacteria and certain fungi, the second
and third steps are a direct sulfhydrylation that
converts the O-acyl-L-homoserine into homocysteine and
further methylation to yield methionine. The latter
reaction can be mediated by either of the two
methionine synthetases present in the cells.
Length = 193
Score = 26.2 bits (58), Expect = 2.0
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 60 LEATFEKTHYPDVVLREQL 78
L T + T P VL E L
Sbjct: 81 LSQTLQATRNPREVLDELL 99
>gnl|CDD|225330 COG2610, GntT, H+/gluconate symporter and related permeases
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism].
Length = 442
Score = 26.4 bits (59), Expect = 2.2
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 9/44 (20%)
Query: 1 MRIATG---------ASMVAVAYPNLYPGYMTHAAATIAAMAAS 35
+RIATG A +VA A +A A S
Sbjct: 348 LRIATGSATVAMITAAGIVAPPLLAQLGAVNPEALHVLATAAGS 391
>gnl|CDD|236835 PRK11069, recC, exonuclease V subunit gamma; Provisional.
Length = 1122
Score = 26.0 bits (58), Expect = 3.1
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 54 EEQLEQLEATFEKTHYPDVV----LREQLALKVDLKEERV 89
E+Q + + Y D V LR++LA ++D +ER+
Sbjct: 613 EQQWQAIIEEGLDAQYGDAVPLSLLRDELAQRLD--QERI 650
>gnl|CDD|130628 TIGR01565, homeo_ZF_HD, homeobox domain, ZF-HD class. This model
represents a class of homoebox domain that differs
substantially from the typical homoebox domain
described in Pfam model pfam00046. It is found in both
C4 and C3 plants.
Length = 58
Score = 24.8 bits (54), Expect = 3.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 45 KRRHRTIFTEEQLEQLEATFEK 66
K+R RT FT EQ E++ EK
Sbjct: 1 KKRRRTKFTAEQKEKMRDFAEK 22
>gnl|CDD|205589 pfam13411, MerR_1, MerR HTH family regulatory protein.
Length = 69
Score = 24.1 bits (53), Expect = 5.6
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 40 PPPKRKRRHRTIFTEEQLEQLE 61
PPP+ +R R +TEE LE+L
Sbjct: 27 PPPRTERGRR-YYTEEDLERLR 47
>gnl|CDD|114726 pfam06020, Roughex, Drosophila roughex protein. This family
consists of several roughex (RUX) proteins specific to
Drosophila species. Roughex can influence the
intracellular distribution of cyclin A and is therefore
defined as a distinct and specialised cell cycle
inhibitor for cyclin A-dependent kinase activity. Rux is
though to regulate the metaphase to anaphase transition
during development.
Length = 334
Score = 25.4 bits (55), Expect = 6.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 34 ASQHSAPPPKRKRRHRTIFTEEQLEQLE 61
+ S PP R+ RT+FTEE ++ E
Sbjct: 234 TEEDSPPPTARRGVRRTLFTEENTQEEE 261
>gnl|CDD|148314 pfam06632, XRCC4, DNA double-strand break repair and V(D)J
recombination protein XRCC4. This family consists of
several eukaryotic DNA double-strand break repair and
V(D)J recombination protein XRCC4 sequences. In the
non-homologous end joining pathway of DNA double-strand
break repair, the ligation step is catalyzed by a
complex of XRCC4 and DNA ligase IV. It is thought that
XRCC4 and ligase IV are essential for alignment-based
gap filling, as well as for final ligation of the
breaks.
Length = 331
Score = 25.2 bits (55), Expect = 6.5
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 42 PKRKRRHR---TIFTEEQLEQLEATFEKTHYPD 71
P RKRR R + TE ++ E ++ PD
Sbjct: 267 PSRKRRQRMQKNLGTEPKMATQEQQLQEKEKPD 299
>gnl|CDD|215127 PLN02210, PLN02210, UDP-glucosyl transferase.
Length = 456
Score = 25.0 bits (54), Expect = 7.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 44 RKRRHRTIFTEEQLEQLEATFEKTHYP 70
K H T+ T EQ L +T EK P
Sbjct: 36 SKNLHFTLATTEQARDLLSTVEKPRRP 62
>gnl|CDD|237087 PRK12391, PRK12391, tryptophan synthase subunit beta; Reviewed.
Length = 427
Score = 24.8 bits (55), Expect = 7.7
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 48 HRTIFTEEQLEQLEATFEKTHYPDVV 73
H+T+ E +QLE E YPDVV
Sbjct: 235 HQTVIGLEAKKQLELAGE---YPDVV 257
>gnl|CDD|215868 pfam00343, Phosphorylase, Carbohydrate phosphorylase. The members
of this family catalyze the formation of glucose
1-phosphate from one of the following polyglucoses;
glycogen, starch, glucan or maltodextrin.
Length = 712
Score = 25.0 bits (55), Expect = 8.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 6 GASMVAVAYPNLYPGYMTHAAATI 29
++AVAY PGY T+ T+
Sbjct: 109 TEVVLAVAYDTPIPGYRTNNTNTL 132
>gnl|CDD|235593 PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated.
Length = 177
Score = 24.7 bits (55), Expect = 8.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 10/35 (28%)
Query: 53 TEEQLEQLEATFEKTHYPDVVLREQLALKVDLKEE 87
+EEQL++L+A EK +L KV L E+
Sbjct: 118 SEEQLDKLKAALEK----------RLGRKVKLNEK 142
>gnl|CDD|234393 TIGR03914, UDG_fam_dom, uracil-DNA glycosylase family domain.
This model represents a clade within the uracil-DNA
glycosylase superfamily. Among characterized proteins,
it most closely resembles the Thermus thermophilus
uracil-DNA glycosylase TTUDGA, which acts uracil
(deamidated cytosine) in both single-stranded DNA and
U/G pairs of double-stranded DNA. This domain may occur
either as a stand-alone protein or as the C-terminal
domain of a fusion with another domain that always
pairs with a particular radical-SAM family protein.
Length = 230
Score = 24.6 bits (54), Expect = 8.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 17 LYPGYMTHAAATIAAMAASQHSAPPPKRKRRHRTIFTEEQLEQLEA 62
L P + A A + AMAA+ + PPP+ R +E L A
Sbjct: 1 LIPELIAGAEARVRAMAAAAPTEPPPRHHRLQAAAMADESPGTLAA 46
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 24.8 bits (55), Expect = 8.8
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 16 NLYPGY-MTHAAATIAAMAASQ 36
LYP Y MT A+ +A +
Sbjct: 215 PLYPTYGMTETASQVATLKPDD 236
>gnl|CDD|219865 pfam08493, AflR, Aflatoxin regulatory protein. This domain is
found in the aflatoxin regulatory protein (AflR) which
is involved in the regulation of the biosynthesis of
aflatoxin in the fungal genus Aspergillus. It occurs
together with the fungal Zn(2)-Cys(6) binuclear cluster
domain (pfam00172).
Length = 275
Score = 24.5 bits (53), Expect = 9.2
Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 15 PNLYPGYMTHAAATIAAMAASQHSAPPPKRKRRHR 49
PN A T A +S H PP +
Sbjct: 5 PNTASSPTIP-ANTTANTTSSSHPQPPVQSGPSSI 38
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.128 0.359
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,807,948
Number of extensions: 400458
Number of successful extensions: 749
Number of sequences better than 10.0: 1
Number of HSP's gapped: 746
Number of HSP's successfully gapped: 54
Length of query: 91
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 33
Effective length of database: 8,365,070
Effective search space: 276047310
Effective search space used: 276047310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)