Query psy7436
Match_columns 243
No_of_seqs 170 out of 1956
Neff 10.7
Searched_HMMs 46136
Date Fri Aug 16 18:15:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7436.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7436hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 4.3E-24 9.3E-29 149.2 16.8 140 84-232 17-156 (160)
2 KOG0027|consensus 99.9 6.7E-22 1.5E-26 141.2 16.1 140 85-232 6-149 (151)
3 COG5126 FRQ1 Ca2+-binding prot 99.9 5.8E-21 1.3E-25 133.6 15.0 133 2-159 22-156 (160)
4 KOG0027|consensus 99.9 9.4E-21 2E-25 135.3 14.3 134 2-159 10-149 (151)
5 PTZ00183 centrin; Provisional 99.9 8.3E-20 1.8E-24 131.9 16.9 140 85-232 15-154 (158)
6 PTZ00184 calmodulin; Provision 99.9 1.1E-19 2.5E-24 129.9 17.3 139 85-231 9-147 (149)
7 KOG0028|consensus 99.8 5.4E-19 1.2E-23 120.9 14.1 134 2-159 35-170 (172)
8 KOG0031|consensus 99.8 1.6E-18 3.4E-23 117.7 15.9 135 85-231 30-164 (171)
9 KOG0028|consensus 99.8 9.9E-19 2.1E-23 119.6 14.9 140 85-232 31-170 (172)
10 KOG0037|consensus 99.8 4.3E-18 9.3E-23 122.8 15.0 151 5-193 62-217 (221)
11 KOG0037|consensus 99.8 7.8E-18 1.7E-22 121.5 15.3 137 86-237 56-193 (221)
12 PTZ00183 centrin; Provisional 99.8 2E-17 4.3E-22 119.5 15.8 134 2-159 19-154 (158)
13 PTZ00184 calmodulin; Provision 99.8 2.7E-17 5.8E-22 117.5 15.7 133 2-158 13-147 (149)
14 KOG0030|consensus 99.8 6.3E-17 1.4E-21 108.1 13.8 143 82-231 6-150 (152)
15 KOG4223|consensus 99.7 7.9E-17 1.7E-21 122.8 11.7 203 10-236 89-309 (325)
16 KOG0031|consensus 99.7 6.3E-16 1.4E-20 105.1 14.7 129 2-158 34-164 (171)
17 KOG0034|consensus 99.7 1.6E-15 3.6E-20 110.0 15.1 138 85-233 31-176 (187)
18 KOG0036|consensus 99.7 2.5E-15 5.5E-20 117.9 14.2 139 84-236 11-150 (463)
19 KOG2643|consensus 99.6 7.3E-15 1.6E-19 116.1 13.0 210 3-236 236-457 (489)
20 KOG0044|consensus 99.6 5.1E-14 1.1E-18 102.3 14.8 138 85-231 24-174 (193)
21 KOG0044|consensus 99.6 1.2E-13 2.7E-18 100.3 15.5 159 13-196 7-175 (193)
22 KOG0030|consensus 99.6 6.8E-14 1.5E-18 93.7 12.2 134 2-158 13-150 (152)
23 KOG0036|consensus 99.5 1.6E-12 3.5E-17 102.4 15.1 157 2-194 16-181 (463)
24 KOG0034|consensus 99.4 4.2E-12 9.2E-17 92.3 13.2 122 11-160 47-176 (187)
25 KOG2562|consensus 99.4 2.4E-12 5.1E-17 102.9 12.0 216 4-228 178-420 (493)
26 KOG4251|consensus 99.4 1.5E-12 3.2E-17 95.8 9.2 217 2-242 103-355 (362)
27 PF13499 EF-hand_7: EF-hand do 99.4 3.6E-12 7.7E-17 77.8 7.3 61 170-230 2-66 (66)
28 cd05022 S-100A13 S-100A13: S-1 99.3 4.3E-12 9.3E-17 81.2 7.2 68 168-235 8-78 (89)
29 KOG4223|consensus 99.3 3.7E-11 7.9E-16 92.2 10.1 163 63-234 54-230 (325)
30 KOG0377|consensus 99.3 8.5E-11 1.8E-15 93.5 12.3 143 86-233 463-616 (631)
31 cd05027 S-100B S-100B: S-100B 99.3 5.2E-11 1.1E-15 76.4 8.1 67 168-234 8-81 (88)
32 PLN02964 phosphatidylserine de 99.2 3E-10 6.5E-15 97.0 13.5 135 63-210 117-271 (644)
33 cd05029 S-100A6 S-100A6: S-100 99.2 1.6E-10 3.5E-15 74.1 8.2 67 168-234 10-81 (88)
34 PF13833 EF-hand_8: EF-hand do 99.2 1.6E-10 3.5E-15 67.4 6.7 52 181-232 1-53 (54)
35 cd05025 S-100A1 S-100A1: S-100 99.1 5.1E-10 1.1E-14 72.9 8.5 67 168-234 9-82 (92)
36 cd05026 S-100Z S-100Z: S-100Z 99.1 6.8E-10 1.5E-14 72.2 8.4 68 168-235 10-84 (93)
37 cd05031 S-100A10_like S-100A10 99.1 6.4E-10 1.4E-14 72.7 8.1 66 168-233 8-80 (94)
38 cd00052 EH Eps15 homology doma 99.1 6.8E-10 1.5E-14 67.8 7.3 61 171-233 2-62 (67)
39 PLN02964 phosphatidylserine de 99.1 2.9E-09 6.2E-14 91.1 12.1 107 2-129 145-271 (644)
40 KOG0751|consensus 99.0 1.9E-08 4.1E-13 81.5 15.4 163 47-228 71-240 (694)
41 smart00027 EH Eps15 homology d 99.0 2.1E-09 4.5E-14 70.6 8.5 64 168-233 10-73 (96)
42 cd00213 S-100 S-100: S-100 dom 99.0 2.5E-09 5.5E-14 69.0 7.9 67 168-234 8-81 (88)
43 cd00051 EFh EF-hand, calcium b 99.0 3.2E-09 7E-14 63.5 7.7 61 170-230 2-62 (63)
44 cd05023 S-100A11 S-100A11: S-1 99.0 5E-09 1.1E-13 67.3 8.5 67 168-234 9-82 (89)
45 PF13499 EF-hand_7: EF-hand do 99.0 2.7E-09 5.8E-14 65.0 6.9 62 88-157 1-66 (66)
46 PF13833 EF-hand_8: EF-hand do 99.0 2E-09 4.2E-14 62.7 5.7 52 11-78 1-53 (54)
47 cd05022 S-100A13 S-100A13: S-1 99.0 4.8E-09 1E-13 67.2 7.6 66 87-160 8-76 (89)
48 cd00252 SPARC_EC SPARC_EC; ext 98.9 8.2E-09 1.8E-13 69.4 7.6 61 168-232 48-108 (116)
49 KOG0038|consensus 98.9 1.7E-08 3.6E-13 68.6 8.6 102 124-233 72-178 (189)
50 KOG2643|consensus 98.9 2.4E-08 5.1E-13 79.8 10.7 155 10-197 298-454 (489)
51 cd05027 S-100B S-100B: S-100B 98.9 2.4E-08 5.2E-13 64.0 8.6 66 87-160 8-80 (88)
52 cd05030 calgranulins Calgranul 98.8 2E-08 4.3E-13 64.6 7.4 66 168-233 8-80 (88)
53 PF14658 EF-hand_9: EF-hand do 98.8 2.7E-08 5.9E-13 58.8 6.8 62 172-233 2-65 (66)
54 KOG0038|consensus 98.8 3.7E-08 8E-13 66.9 7.4 100 53-160 74-178 (189)
55 KOG4251|consensus 98.8 2.2E-08 4.7E-13 74.1 6.8 170 62-231 113-308 (362)
56 cd00052 EH Eps15 homology doma 98.7 6.5E-08 1.4E-12 58.9 6.4 60 2-79 1-62 (67)
57 KOG0377|consensus 98.7 3.1E-07 6.8E-12 73.7 11.6 132 3-160 467-616 (631)
58 cd05029 S-100A6 S-100A6: S-100 98.7 2.1E-07 4.5E-12 59.7 8.4 66 87-160 10-80 (88)
59 cd05025 S-100A1 S-100A1: S-100 98.7 2.3E-07 5E-12 60.3 8.6 67 86-160 8-81 (92)
60 cd05031 S-100A10_like S-100A10 98.7 2.2E-07 4.8E-12 60.6 8.2 67 86-160 7-80 (94)
61 cd05026 S-100Z S-100Z: S-100Z 98.6 3.2E-07 6.9E-12 59.6 8.6 66 87-160 10-82 (93)
62 smart00027 EH Eps15 homology d 98.6 2.9E-07 6.3E-12 60.4 8.1 66 85-160 8-73 (96)
63 KOG0751|consensus 98.6 2.5E-06 5.4E-11 69.6 13.5 193 2-230 110-312 (694)
64 cd00213 S-100 S-100: S-100 dom 98.6 4.1E-07 8.8E-12 58.7 7.5 68 85-160 6-80 (88)
65 cd00051 EFh EF-hand, calcium b 98.6 3.1E-07 6.8E-12 54.6 6.4 59 2-76 2-62 (63)
66 KOG0040|consensus 98.6 1.5E-06 3.2E-11 79.0 12.8 130 4-157 2257-2396(2399)
67 KOG0040|consensus 98.5 2.5E-06 5.5E-11 77.6 13.0 129 87-231 2253-2397(2399)
68 KOG2562|consensus 98.5 3.2E-06 6.9E-11 68.5 12.2 198 5-231 144-378 (493)
69 cd05023 S-100A11 S-100A11: S-1 98.5 1.9E-06 4.1E-11 55.4 8.5 67 86-160 8-81 (89)
70 KOG0041|consensus 98.5 1.4E-06 3E-11 62.8 8.1 67 168-234 99-165 (244)
71 cd05024 S-100A10 S-100A10: A s 98.4 2.3E-06 5E-11 54.5 8.3 66 168-234 8-78 (91)
72 PF14658 EF-hand_9: EF-hand do 98.4 9E-07 2E-11 52.4 5.7 59 4-78 2-64 (66)
73 PF00036 EF-hand_1: EF hand; 98.4 6.8E-07 1.5E-11 44.3 3.8 27 170-196 2-28 (29)
74 cd00252 SPARC_EC SPARC_EC; ext 98.3 4.3E-06 9.4E-11 56.3 7.9 62 85-158 46-107 (116)
75 PF00036 EF-hand_1: EF hand; 98.3 1.2E-06 2.6E-11 43.4 3.4 28 205-232 1-28 (29)
76 PF14788 EF-hand_10: EF hand; 98.3 4.8E-06 1E-10 46.5 5.8 50 184-233 1-50 (51)
77 KOG0041|consensus 98.3 1.9E-05 4E-10 57.1 10.2 102 85-194 97-201 (244)
78 PF12763 EF-hand_4: Cytoskelet 98.3 8.9E-06 1.9E-10 53.7 7.9 65 166-233 8-72 (104)
79 PF13405 EF-hand_6: EF-hand do 98.2 2.5E-06 5.5E-11 43.2 3.9 29 170-198 2-31 (31)
80 cd05030 calgranulins Calgranul 98.2 1.3E-05 2.8E-10 51.5 7.4 66 87-160 8-80 (88)
81 PF13405 EF-hand_6: EF-hand do 98.1 7.2E-06 1.6E-10 41.5 3.8 30 88-117 1-31 (31)
82 PRK12309 transaldolase/EF-hand 98.0 4.3E-05 9.3E-10 62.5 8.7 55 167-234 333-387 (391)
83 PF13202 EF-hand_5: EF hand; P 97.9 1.5E-05 3.3E-10 38.0 3.3 23 171-193 2-24 (25)
84 cd05024 S-100A10 S-100A10: A s 97.9 0.00021 4.6E-09 45.6 8.6 64 88-160 9-77 (91)
85 KOG4666|consensus 97.8 4.9E-05 1.1E-09 59.0 6.0 122 99-233 239-360 (412)
86 KOG0169|consensus 97.8 0.00074 1.6E-08 58.5 12.8 141 84-237 133-279 (746)
87 PF10591 SPARC_Ca_bdg: Secrete 97.7 1.3E-05 2.9E-10 53.8 1.4 62 166-229 52-113 (113)
88 KOG1029|consensus 97.7 0.00096 2.1E-08 57.8 12.5 61 169-231 196-256 (1118)
89 PF14788 EF-hand_10: EF hand; 97.7 0.00017 3.6E-09 40.4 5.0 49 14-78 1-49 (51)
90 PF13202 EF-hand_5: EF hand; P 97.7 7.9E-05 1.7E-09 35.5 3.1 25 89-113 1-25 (25)
91 PF12763 EF-hand_4: Cytoskelet 97.6 0.00057 1.2E-08 45.1 7.2 65 84-159 7-71 (104)
92 KOG0046|consensus 97.3 0.00094 2E-08 55.4 7.1 68 168-236 19-89 (627)
93 KOG0169|consensus 97.3 0.0042 9.2E-08 54.0 11.2 135 2-161 138-276 (746)
94 PRK12309 transaldolase/EF-hand 97.3 0.0013 2.9E-08 54.0 7.9 54 49-116 333-386 (391)
95 KOG4065|consensus 97.3 0.0015 3.3E-08 42.9 6.5 61 169-229 68-142 (144)
96 KOG1707|consensus 97.3 0.0025 5.3E-08 54.0 9.3 136 86-231 194-376 (625)
97 PF09279 EF-hand_like: Phospho 97.1 0.0013 2.8E-08 41.7 5.2 66 170-236 2-73 (83)
98 KOG4666|consensus 96.9 0.0035 7.6E-08 49.1 6.0 102 50-160 259-360 (412)
99 KOG1029|consensus 96.7 0.025 5.5E-07 49.5 10.6 121 10-158 27-256 (1118)
100 smart00054 EFh EF-hand, calciu 96.6 0.0044 9.4E-08 29.7 3.5 26 171-196 3-28 (29)
101 smart00054 EFh EF-hand, calciu 96.6 0.0032 6.9E-08 30.2 2.8 27 206-232 2-28 (29)
102 PF05042 Caleosin: Caleosin re 96.3 0.25 5.5E-06 35.5 11.8 141 86-229 6-163 (174)
103 PF09279 EF-hand_like: Phospho 96.2 0.008 1.7E-07 38.0 3.6 67 89-160 2-70 (83)
104 PF10591 SPARC_Ca_bdg: Secrete 96.1 0.0023 5E-08 43.0 1.1 62 84-155 51-112 (113)
105 KOG4065|consensus 96.0 0.021 4.6E-07 37.7 4.8 59 5-75 72-142 (144)
106 KOG0046|consensus 95.8 0.044 9.6E-07 45.9 7.3 66 86-160 18-86 (627)
107 KOG0998|consensus 95.6 0.019 4.1E-07 52.2 5.0 203 2-235 13-348 (847)
108 KOG1707|consensus 95.6 0.13 2.8E-06 44.0 9.2 130 10-160 207-378 (625)
109 PF05042 Caleosin: Caleosin re 94.5 0.68 1.5E-05 33.4 9.1 103 10-113 19-164 (174)
110 KOG4578|consensus 94.4 0.044 9.5E-07 43.2 3.3 66 168-235 333-401 (421)
111 PF05517 p25-alpha: p25-alpha 94.3 0.38 8.2E-06 34.3 7.6 65 173-237 7-74 (154)
112 KOG1955|consensus 94.1 0.16 3.5E-06 42.4 5.9 63 169-233 232-294 (737)
113 KOG1265|consensus 94.0 2.6 5.6E-05 38.3 13.3 126 97-232 158-299 (1189)
114 KOG2243|consensus 93.9 0.098 2.1E-06 49.0 4.7 64 172-236 4061-4124(5019)
115 PLN02952 phosphoinositide phos 93.8 0.93 2E-05 39.7 10.2 86 146-232 15-110 (599)
116 KOG3555|consensus 93.7 0.1 2.2E-06 41.5 3.9 62 168-233 250-311 (434)
117 KOG1265|consensus 93.7 1.7 3.6E-05 39.4 11.5 89 67-163 205-303 (1189)
118 KOG4347|consensus 93.5 0.13 2.9E-06 44.4 4.7 77 148-225 535-611 (671)
119 KOG0035|consensus 93.5 0.4 8.7E-06 43.4 7.8 92 3-111 750-848 (890)
120 KOG0035|consensus 93.1 1.6 3.4E-05 39.8 10.7 98 86-192 746-848 (890)
121 PF08726 EFhand_Ca_insen: Ca2+ 93.0 0.097 2.1E-06 31.6 2.3 55 166-228 4-65 (69)
122 PF09069 EF-hand_3: EF-hand; 93.0 1.5 3.3E-05 28.0 7.9 63 168-233 3-76 (90)
123 PF14513 DAG_kinase_N: Diacylg 92.5 0.35 7.5E-06 33.7 4.8 78 12-100 5-82 (138)
124 KOG0042|consensus 91.6 0.4 8.7E-06 41.0 5.1 64 170-233 595-658 (680)
125 PF05517 p25-alpha: p25-alpha 91.3 0.81 1.7E-05 32.7 5.8 62 2-79 1-70 (154)
126 KOG4347|consensus 91.3 0.51 1.1E-05 40.9 5.4 76 67-143 535-610 (671)
127 KOG3866|consensus 91.1 0.61 1.3E-05 36.7 5.3 81 151-231 227-323 (442)
128 KOG1955|consensus 90.2 0.79 1.7E-05 38.5 5.4 66 85-160 229-294 (737)
129 KOG3555|consensus 89.7 0.77 1.7E-05 36.7 4.8 64 49-117 249-312 (434)
130 PF14513 DAG_kinase_N: Diacylg 89.6 2.5 5.4E-05 29.5 6.8 77 101-181 5-82 (138)
131 cd07313 terB_like_2 tellurium 89.4 1.9 4.1E-05 28.3 6.0 84 10-111 11-96 (104)
132 PLN02952 phosphoinositide phos 89.2 5 0.00011 35.4 9.7 88 10-114 12-109 (599)
133 PF08976 DUF1880: Domain of un 89.1 0.42 9.2E-06 31.8 2.6 31 201-231 4-34 (118)
134 COG4103 Uncharacterized protei 89.0 1.9 4E-05 30.0 5.7 95 5-117 35-134 (148)
135 PF08976 DUF1880: Domain of un 87.6 0.61 1.3E-05 31.1 2.6 32 30-77 3-34 (118)
136 KOG2243|consensus 87.5 1.2 2.6E-05 42.5 5.1 59 92-159 4062-4120(5019)
137 PF09069 EF-hand_3: EF-hand; 86.6 4.2 9.1E-05 26.1 5.9 60 2-79 5-76 (90)
138 PF11116 DUF2624: Protein of u 82.7 9.7 0.00021 24.0 6.3 48 184-231 14-61 (85)
139 PF12174 RST: RCD1-SRO-TAF4 (R 81.6 3.9 8.5E-05 24.8 4.0 48 146-197 7-54 (70)
140 PF08726 EFhand_Ca_insen: Ca2+ 81.5 0.94 2E-05 27.4 1.3 62 85-155 4-65 (69)
141 PF12174 RST: RCD1-SRO-TAF4 (R 81.5 5.4 0.00012 24.2 4.6 55 182-239 6-60 (70)
142 KOG4578|consensus 79.9 1.2 2.7E-05 35.4 1.8 65 51-115 334-398 (421)
143 KOG0998|consensus 79.7 2.7 5.8E-05 38.8 4.2 61 170-233 131-191 (847)
144 PF11116 DUF2624: Protein of u 78.7 14 0.0003 23.4 7.1 36 11-46 11-46 (85)
145 PLN02222 phosphoinositide phos 75.9 15 0.00032 32.4 7.3 67 166-234 23-92 (581)
146 PLN02228 Phosphoinositide phos 73.9 19 0.00041 31.7 7.4 67 166-234 22-94 (567)
147 PF08414 NADPH_Ox: Respiratory 71.6 18 0.00039 23.6 5.2 66 85-160 28-93 (100)
148 KOG2871|consensus 69.6 5.6 0.00012 32.4 3.1 66 165-230 306-372 (449)
149 cd07313 terB_like_2 tellurium 69.5 23 0.00051 23.0 5.8 80 101-190 13-94 (104)
150 cd08315 Death_TRAILR_DR4_DR5 D 68.7 29 0.00063 22.5 9.2 88 86-210 3-90 (96)
151 PF05099 TerB: Tellurite resis 68.0 11 0.00023 26.1 4.1 81 10-108 35-117 (140)
152 cd07176 terB tellurite resista 67.4 10 0.00022 24.9 3.7 82 10-110 14-100 (111)
153 KOG0042|consensus 66.7 11 0.00024 32.8 4.4 58 10-83 605-662 (680)
154 KOG3866|consensus 66.2 13 0.00028 29.7 4.4 91 28-118 221-327 (442)
155 TIGR01639 P_fal_TIGR01639 Plas 65.7 14 0.00031 21.6 3.6 35 12-46 7-41 (61)
156 PLN02228 Phosphoinositide phos 65.6 47 0.001 29.4 8.1 71 84-160 21-93 (567)
157 KOG1785|consensus 65.2 68 0.0015 26.8 8.3 93 4-116 179-275 (563)
158 PF07308 DUF1456: Protein of u 64.3 29 0.00063 20.9 5.2 32 15-46 14-45 (68)
159 PF07308 DUF1456: Protein of u 64.3 29 0.00063 20.9 5.6 48 185-232 14-61 (68)
160 PLN02230 phosphoinositide phos 62.6 52 0.0011 29.3 7.9 67 166-233 27-103 (598)
161 cd07316 terB_like_DjlA N-termi 62.1 41 0.00088 21.8 6.8 84 10-111 11-97 (106)
162 cd08315 Death_TRAILR_DR4_DR5 D 60.8 43 0.00094 21.7 6.2 27 14-42 16-42 (96)
163 KOG4004|consensus 60.4 3.2 7E-05 30.6 0.3 55 174-231 193-249 (259)
164 cd08313 Death_TNFR1 Death doma 58.8 42 0.00092 21.0 6.2 61 13-77 7-68 (80)
165 cd08316 Death_FAS_TNFRSF6 Deat 58.2 49 0.0011 21.5 7.6 31 14-46 17-47 (97)
166 cd07357 HN_L-whirlin_R2_like S 57.9 20 0.00043 22.3 3.3 38 31-84 16-53 (81)
167 PF11829 DUF3349: Protein of u 56.4 53 0.0012 21.4 6.6 32 15-46 20-51 (96)
168 KOG3077|consensus 55.2 87 0.0019 24.5 7.1 72 165-236 61-133 (260)
169 cd00171 Sec7 Sec7 domain; Doma 54.3 86 0.0019 23.1 10.4 41 95-135 141-183 (185)
170 PF13623 SurA_N_2: SurA N-term 51.6 84 0.0018 22.2 8.1 76 147-229 48-144 (145)
171 PRK09430 djlA Dna-J like membr 51.2 1.2E+02 0.0026 23.9 12.2 100 10-133 67-176 (267)
172 KOG1264|consensus 50.9 33 0.00072 31.5 4.8 130 11-160 157-294 (1267)
173 KOG0039|consensus 50.5 49 0.0011 29.8 6.0 77 148-231 4-88 (646)
174 PF07499 RuvA_C: RuvA, C-termi 50.5 41 0.00088 18.4 3.6 41 187-231 3-43 (47)
175 PF02761 Cbl_N2: CBL proto-onc 50.4 63 0.0014 20.5 6.5 70 30-117 3-72 (85)
176 PLN02223 phosphoinositide phos 50.3 89 0.0019 27.4 7.2 68 166-234 14-94 (537)
177 cd08780 Death_TRADD Death Doma 50.2 66 0.0014 20.6 5.2 59 18-76 14-75 (90)
178 PLN02222 phosphoinositide phos 50.1 54 0.0012 29.1 5.9 62 2-78 27-90 (581)
179 PF02761 Cbl_N2: CBL proto-onc 49.5 66 0.0014 20.4 5.7 44 184-227 22-65 (85)
180 KOG1264|consensus 49.4 80 0.0017 29.2 6.8 137 89-234 146-295 (1267)
181 COG4359 Uncharacterized conser 49.3 85 0.0019 23.3 5.9 76 146-233 12-88 (220)
182 KOG3077|consensus 49.0 1.3E+02 0.0028 23.6 12.0 76 3-96 67-145 (260)
183 PF03672 UPF0154: Uncharacteri 48.5 51 0.0011 19.6 3.9 32 182-213 29-60 (64)
184 smart00222 Sec7 Sec7 domain. D 48.5 1.1E+02 0.0024 22.6 10.1 40 96-135 144-185 (187)
185 PF04282 DUF438: Family of unk 48.2 62 0.0013 19.7 5.7 23 20-42 2-24 (71)
186 PLN02230 phosphoinositide phos 47.2 1.3E+02 0.0028 26.9 7.8 74 84-159 26-102 (598)
187 KOG2871|consensus 47.0 31 0.00067 28.4 3.7 45 85-129 307-351 (449)
188 PF09336 Vps4_C: Vps4 C termin 46.9 29 0.00063 20.4 2.8 26 184-209 29-54 (62)
189 PF00404 Dockerin_1: Dockerin 44.9 31 0.00068 15.4 2.5 12 179-190 2-13 (21)
190 KOG1954|consensus 44.0 52 0.0011 27.4 4.6 56 170-228 446-501 (532)
191 KOG4070|consensus 44.0 83 0.0018 22.3 5.0 46 169-214 58-108 (180)
192 PF02885 Glycos_trans_3N: Glyc 43.7 68 0.0015 18.9 4.3 13 30-42 14-26 (66)
193 PRK00819 RNA 2'-phosphotransfe 43.4 52 0.0011 24.2 4.2 36 10-45 29-64 (179)
194 KOG0506|consensus 43.1 48 0.001 28.4 4.4 70 90-159 89-158 (622)
195 PF01885 PTS_2-RNA: RNA 2'-pho 42.9 41 0.00088 24.9 3.7 36 10-45 28-63 (186)
196 PF08414 NADPH_Ox: Respiratory 42.4 97 0.0021 20.3 5.8 64 168-236 30-96 (100)
197 PF08730 Rad33: Rad33; InterP 41.4 1.4E+02 0.003 21.7 9.6 34 84-118 11-44 (170)
198 PRK00523 hypothetical protein; 41.3 72 0.0016 19.4 3.8 32 182-213 37-68 (72)
199 smart00513 SAP Putative DNA-bi 38.9 51 0.0011 16.6 2.7 20 13-32 2-21 (35)
200 PF12631 GTPase_Cys_C: Catalyt 38.9 75 0.0016 19.2 3.9 46 168-213 23-72 (73)
201 PRK09430 djlA Dna-J like membr 38.7 2E+02 0.0043 22.8 9.0 97 99-212 67-174 (267)
202 PF09068 EF-hand_2: EF hand; 38.5 53 0.0011 22.6 3.5 28 170-197 99-126 (127)
203 KOG4004|consensus 38.2 14 0.00031 27.4 0.6 48 63-113 201-248 (259)
204 PF01023 S_100: S-100/ICaBP ty 37.7 69 0.0015 17.3 3.9 30 168-197 6-37 (44)
205 PTZ00373 60S Acidic ribosomal 37.4 1.3E+02 0.0028 20.3 6.3 52 172-228 7-58 (112)
206 PF01316 Arg_repressor: Argini 36.3 98 0.0021 18.8 4.0 31 184-214 19-49 (70)
207 PF12419 DUF3670: SNF2 Helicas 35.7 58 0.0013 22.8 3.4 49 11-75 80-138 (141)
208 COG3763 Uncharacterized protei 35.4 1E+02 0.0023 18.6 3.9 33 182-214 36-68 (71)
209 KOG3449|consensus 35.3 1.4E+02 0.003 20.0 5.1 52 172-228 5-56 (112)
210 PF08461 HTH_12: Ribonuclease 35.1 55 0.0012 19.5 2.8 36 181-216 10-45 (66)
211 PLN02223 phosphoinositide phos 35.0 1.2E+02 0.0027 26.6 5.7 69 2-78 18-92 (537)
212 PF02037 SAP: SAP domain; Int 33.8 50 0.0011 16.7 2.1 19 14-32 3-21 (35)
213 PF01369 Sec7: Sec7 domain; I 33.8 2E+02 0.0042 21.3 6.7 39 95-133 146-186 (190)
214 KOG0506|consensus 33.5 1.1E+02 0.0025 26.3 5.1 61 171-231 89-157 (622)
215 PF00690 Cation_ATPase_N: Cati 33.4 79 0.0017 18.7 3.4 33 185-217 4-37 (69)
216 TIGR02675 tape_meas_nterm tape 33.3 67 0.0015 19.7 3.0 16 11-26 27-42 (75)
217 PRK01844 hypothetical protein; 33.1 1.1E+02 0.0024 18.6 3.8 32 182-213 36-67 (72)
218 PF03979 Sigma70_r1_1: Sigma-7 32.5 48 0.001 20.7 2.3 33 100-134 18-50 (82)
219 PF11848 DUF3368: Domain of un 32.3 92 0.002 17.1 3.9 33 181-213 14-47 (48)
220 cd08316 Death_FAS_TNFRSF6 Deat 32.2 1.5E+02 0.0032 19.4 8.7 78 102-211 16-93 (97)
221 TIGR03573 WbuX N-acetyl sugar 32.0 1.1E+02 0.0024 25.1 5.0 43 181-229 299-341 (343)
222 PF12949 HeH: HeH/LEM domain; 31.7 54 0.0012 16.8 2.0 19 14-32 3-21 (35)
223 PF13331 DUF4093: Domain of un 31.3 1.4E+02 0.0031 19.0 7.7 56 66-128 30-85 (87)
224 TIGR00135 gatC glutamyl-tRNA(G 30.9 87 0.0019 20.0 3.4 31 15-45 1-31 (93)
225 cd07177 terB_like tellurium re 30.6 1.4E+02 0.0031 18.8 5.1 18 10-27 11-28 (104)
226 PF10437 Lip_prot_lig_C: Bacte 29.7 1.4E+02 0.0031 18.5 4.8 45 15-76 42-86 (86)
227 PRK10945 gene expression modul 29.6 91 0.002 19.0 2.9 31 16-46 20-50 (72)
228 KOG4403|consensus 29.6 2.5E+02 0.0054 23.9 6.4 61 51-115 69-129 (575)
229 TIGR01848 PHA_reg_PhaR polyhyd 29.3 1.8E+02 0.0038 19.4 4.7 62 144-216 16-81 (107)
230 PF09373 PMBR: Pseudomurein-bi 29.2 68 0.0015 16.0 2.1 16 182-197 2-17 (33)
231 cd08784 Death_DRs Death Domain 29.0 1.5E+02 0.0031 18.3 6.2 26 14-41 8-33 (79)
232 PF01885 PTS_2-RNA: RNA 2'-pho 28.9 1.2E+02 0.0025 22.5 4.1 37 178-214 26-62 (186)
233 PF07879 PHB_acc_N: PHB/PHA ac 28.8 96 0.0021 18.4 2.9 22 175-196 10-31 (64)
234 PRK00034 gatC aspartyl/glutamy 28.3 1.1E+02 0.0023 19.6 3.5 32 14-45 2-33 (95)
235 PF09851 SHOCT: Short C-termin 28.2 73 0.0016 15.6 2.1 16 11-26 13-28 (31)
236 cd05833 Ribosomal_P2 Ribosomal 27.9 1.9E+02 0.0041 19.3 6.3 56 172-232 5-60 (109)
237 COG4359 Uncharacterized conser 27.7 2.6E+02 0.0057 20.9 7.0 78 63-160 10-88 (220)
238 COG4103 Uncharacterized protei 27.5 2.3E+02 0.0049 20.1 6.9 93 91-195 34-128 (148)
239 PRK00819 RNA 2'-phosphotransfe 27.1 1.5E+02 0.0034 21.8 4.5 35 179-213 28-62 (179)
240 TIGR02029 AcsF magnesium-proto 26.9 1.3E+02 0.0028 24.3 4.2 87 24-135 25-116 (337)
241 KOG1785|consensus 26.6 3.9E+02 0.0085 22.5 7.6 85 101-197 188-275 (563)
242 TIGR03798 ocin_TIGR03798 bacte 26.6 1.4E+02 0.0031 17.4 5.7 25 185-209 25-49 (64)
243 PF04361 DUF494: Protein of un 26.3 2.5E+02 0.0054 20.1 5.6 45 168-214 3-48 (155)
244 PF08672 APC2: Anaphase promot 25.9 1.5E+02 0.0032 17.3 3.9 44 192-237 4-49 (60)
245 COG1460 Uncharacterized protei 25.3 1.2E+02 0.0027 20.4 3.3 25 17-41 82-106 (114)
246 KOG4286|consensus 25.0 3.1E+02 0.0066 25.4 6.5 93 55-159 475-580 (966)
247 cd01047 ACSF Aerobic Cyclase S 24.9 3.8E+02 0.0081 21.7 7.0 25 24-48 15-39 (323)
248 PF07862 Nif11: Nitrogen fixat 24.7 1.3E+02 0.0028 16.4 5.0 21 186-206 28-48 (49)
249 KOG2303|consensus 24.0 5E+02 0.011 22.9 7.7 36 94-129 532-567 (706)
250 PTZ00373 60S Acidic ribosomal 23.8 2.4E+02 0.0051 19.0 6.8 42 92-133 8-49 (112)
251 KOG4629|consensus 23.4 2E+02 0.0044 26.4 5.2 61 169-236 405-465 (714)
252 CHL00185 ycf59 magnesium-proto 23.3 1.9E+02 0.0041 23.6 4.6 87 24-135 31-122 (351)
253 KOG1954|consensus 23.2 1.9E+02 0.004 24.4 4.6 55 3-75 447-502 (532)
254 KOG4301|consensus 22.9 1.7E+02 0.0036 24.0 4.2 61 172-233 114-174 (434)
255 KOG0039|consensus 22.9 1.8E+02 0.004 26.4 5.0 72 64-143 2-81 (646)
256 KOG0869|consensus 22.6 3E+02 0.0065 19.8 7.0 50 152-213 66-115 (168)
257 PRK13654 magnesium-protoporphy 22.0 2.1E+02 0.0045 23.5 4.5 87 24-135 35-126 (355)
258 KOG2301|consensus 22.0 92 0.002 31.4 3.1 38 82-119 1412-1449(1592)
259 PRK00441 argR arginine repress 22.0 2.1E+02 0.0046 20.3 4.3 43 181-223 15-61 (149)
260 PF08044 DUF1707: Domain of un 21.9 1.5E+02 0.0032 16.8 2.8 31 11-41 20-50 (53)
261 PF04558 tRNA_synt_1c_R1: Glut 21.8 74 0.0016 23.0 2.0 48 165-213 82-129 (164)
262 KOG2301|consensus 21.6 81 0.0018 31.8 2.7 67 166-233 1415-1485(1592)
263 PF07128 DUF1380: Protein of u 21.4 1.5E+02 0.0032 20.8 3.2 31 185-215 27-57 (139)
264 TIGR03573 WbuX N-acetyl sugar 21.1 2.9E+02 0.0063 22.7 5.5 31 102-132 301-331 (343)
265 COG1859 KptA RNA:NAD 2'-phosph 20.7 1.9E+02 0.0042 21.9 3.9 36 10-45 55-90 (211)
266 PF02337 Gag_p10: Retroviral G 20.5 1.6E+02 0.0034 19.0 3.0 23 191-213 15-37 (90)
267 PHA02105 hypothetical protein 20.4 1.9E+02 0.0041 16.7 3.2 48 184-231 4-56 (68)
268 PF06384 ICAT: Beta-catenin-in 20.4 1.5E+02 0.0032 18.5 2.7 24 107-130 20-43 (78)
269 PF12486 DUF3702: ImpA domain 20.3 2.7E+02 0.0058 19.8 4.4 30 168-197 69-98 (148)
270 PF14932 HAUS-augmin3: HAUS au 20.1 4.1E+02 0.009 20.8 5.9 49 149-198 7-56 (256)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.93 E-value=4.3e-24 Score=149.24 Aligned_cols=140 Identities=44% Similarity=0.851 Sum_probs=131.6
Q ss_pred ccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCC
Q psy7436 84 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKD 163 (243)
Q Consensus 84 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~ 163 (243)
....+++.+|..+|++++|.|+..+|..+++.+|..++.+++..++..++. +.+. |+|.+|+.++......
T Consensus 17 ~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~--------idf~~Fl~~ms~~~~~ 87 (160)
T COG5126 17 EQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNET--------VDFPEFLTVMSVKLKR 87 (160)
T ss_pred HHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCc--------cCHHHHHHHHHHHhcc
Confidence 456789999999999999999999999999999999999999999999998 5454 7999999999999988
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q psy7436 164 TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVH 232 (243)
Q Consensus 164 ~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 232 (243)
....+.+..+|+.||.+++|+|+..+++++|+.+|..+++++++.+++.+|++++|+|+|++|++.+..
T Consensus 88 ~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 88 GDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred CCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 888999999999999999999999999999999999999999999999999999999999999987653
No 2
>KOG0027|consensus
Probab=99.89 E-value=6.7e-22 Score=141.22 Aligned_cols=140 Identities=55% Similarity=0.922 Sum_probs=128.9
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCCC
Q psy7436 85 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDT 164 (243)
Q Consensus 85 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~~ 164 (243)
....++.+|..+|.+++|.|+..++..+++.+|..++..++..++..++.+++|. |++.+|+.++.......
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~--------I~~~eF~~l~~~~~~~~ 77 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGT--------IDFEEFLDLMEKLGEEK 77 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCe--------EcHHHHHHHHHhhhccc
Confidence 4567899999999999999999999999999999999999999999999997776 78889999998876544
Q ss_pred Cc----HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q psy7436 165 DS----EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVH 232 (243)
Q Consensus 165 ~~----~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 232 (243)
.. .+.+..+|+.+|.+++|+|+..||+.+|..+|..++.+++..++..+|.|+||.|+|.+|++.+..
T Consensus 78 ~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 78 TDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 43 458999999999999999999999999999999999999999999999999999999999988754
No 3
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.87 E-value=5.8e-21 Score=133.58 Aligned_cols=133 Identities=53% Similarity=0.935 Sum_probs=123.1
Q ss_pred hhhhhhhc--CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhh
Q psy7436 2 IEEYGSLL--DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARK 79 (243)
Q Consensus 2 ~~~~f~~f--d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~ 79 (243)
++++|++| |++|.|+..+|..+++.+|.+++..++.+++..++. +.+.|+|.+|+.++...
T Consensus 22 lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-----------------~~~~idf~~Fl~~ms~~ 84 (160)
T COG5126 22 LKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-----------------GNETVDFPEFLTVMSVK 84 (160)
T ss_pred HHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-----------------CCCccCHHHHHHHHHHH
Confidence 56788888 679999999999999999999999999999999876 35889999999999999
Q ss_pred cCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHh
Q psy7436 80 MKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159 (243)
Q Consensus 80 ~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~ 159 (243)
.......++++.+|+.||.+++|+|+..++..+++.+|..+++++++.+++.++.+.+|. +++++|++.+..
T Consensus 85 ~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~--------i~~~eF~~~~~~ 156 (160)
T COG5126 85 LKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGE--------IDYEEFKKLIKD 156 (160)
T ss_pred hccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCce--------EeHHHHHHHHhc
Confidence 988899999999999999999999999999999999999999999999999999998887 677799987754
No 4
>KOG0027|consensus
Probab=99.87 E-value=9.4e-21 Score=135.31 Aligned_cols=134 Identities=62% Similarity=1.035 Sum_probs=122.0
Q ss_pred hhhhhhhc--CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhh
Q psy7436 2 IEEYGSLL--DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARK 79 (243)
Q Consensus 2 ~~~~f~~f--d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~ 79 (243)
+..+|+.| |++|+|+..+|..+++.+|..+++.++..++..++.+ ++|.|++.+|+.++...
T Consensus 10 l~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~d----------------g~g~I~~~eF~~l~~~~ 73 (151)
T KOG0027|consen 10 LKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLD----------------GDGTIDFEEFLDLMEKL 73 (151)
T ss_pred HHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC----------------CCCeEcHHHHHHHHHhh
Confidence 56788888 8999999999999999999999999999999999999 99999999999999866
Q ss_pred cCCcc----cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHH
Q psy7436 80 MKDTD----SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLT 155 (243)
Q Consensus 80 ~~~~~----~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~ 155 (243)
..... ....++.+|+.+|.+++|.|+..+|..++..+|.+++.+++..+++..+.+.+|. |+|.+|++
T Consensus 74 ~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~--------i~f~ef~~ 145 (151)
T KOG0027|consen 74 GEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGK--------VNFEEFVK 145 (151)
T ss_pred hcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCe--------EeHHHHHH
Confidence 55443 3458999999999999999999999999999999999999999999999998887 67779998
Q ss_pred HHHh
Q psy7436 156 MMAR 159 (243)
Q Consensus 156 ~~~~ 159 (243)
.+..
T Consensus 146 ~m~~ 149 (151)
T KOG0027|consen 146 MMSG 149 (151)
T ss_pred HHhc
Confidence 8754
No 5
>PTZ00183 centrin; Provisional
Probab=99.85 E-value=8.3e-20 Score=131.94 Aligned_cols=140 Identities=46% Similarity=0.760 Sum_probs=126.9
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCCC
Q psy7436 85 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDT 164 (243)
Q Consensus 85 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~~ 164 (243)
...++..+|..+|.+++|.|+..||..+++.+|..++...+..++..++.+++|. |++.+|+..+.......
T Consensus 15 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~--------i~~~eF~~~~~~~~~~~ 86 (158)
T PTZ00183 15 QKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGK--------IDFEEFLDIMTKKLGER 86 (158)
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc--------EeHHHHHHHHHHHhcCC
Confidence 4566889999999999999999999999999998889999999999999997777 67779999877654445
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q psy7436 165 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVH 232 (243)
Q Consensus 165 ~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 232 (243)
...+.+..+|+.+|.+++|.|+..||..++..+|..+++.++..++..+|.+++|.|+|++|..++..
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 56678999999999999999999999999999999999999999999999999999999999998865
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.85 E-value=1.1e-19 Score=129.86 Aligned_cols=139 Identities=70% Similarity=1.092 Sum_probs=125.7
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCCC
Q psy7436 85 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDT 164 (243)
Q Consensus 85 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~~ 164 (243)
....++..|..+|.+++|.|+..+|..++..++..++.+.+..++..++.+++|. |++++|+..+.......
T Consensus 9 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~--------i~~~ef~~~l~~~~~~~ 80 (149)
T PTZ00184 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT--------IDFPEFLTLMARKMKDT 80 (149)
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCc--------CcHHHHHHHHHHhccCC
Confidence 3456889999999999999999999999999998888999999999999987776 78889999888765544
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q psy7436 165 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCV 231 (243)
Q Consensus 165 ~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 231 (243)
.....+..+|+.+|.+++|.|+..||..++..+|..++..++..+++.+|.+++|.|+|+||+.++.
T Consensus 81 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 81 DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 5567889999999999999999999999999999999999999999999999999999999998775
No 7
>KOG0028|consensus
Probab=99.82 E-value=5.4e-19 Score=120.85 Aligned_cols=134 Identities=44% Similarity=0.742 Sum_probs=125.8
Q ss_pred hhhhhhhc--CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhh
Q psy7436 2 IEEYGSLL--DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARK 79 (243)
Q Consensus 2 ~~~~f~~f--d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~ 79 (243)
|+..|.+| +++|+|+++||+.+++.+|.++...++.+++...+.. +.|.|++++|...+...
T Consensus 35 i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~----------------~~g~i~fe~f~~~mt~k 98 (172)
T KOG0028|consen 35 IKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKE----------------GSGKITFEDFRRVMTVK 98 (172)
T ss_pred HHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhc----------------cCceechHHHHHHHHHH
Confidence 67889999 8999999999999999999999999999999999998 99999999999999888
Q ss_pred cCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHh
Q psy7436 80 MKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159 (243)
Q Consensus 80 ~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~ 159 (243)
....+....+..+|+.+|-+++|.|+..+|+.+...+|..+++.++..++..++.+.+|. |+-++|...+..
T Consensus 99 ~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dge--------vneeEF~~imk~ 170 (172)
T KOG0028|consen 99 LGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGE--------VNEEEFIRIMKK 170 (172)
T ss_pred HhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhccccccc--------ccHHHHHHHHhc
Confidence 887889999999999999999999999999999999999999999999999999998888 677799887653
No 8
>KOG0031|consensus
Probab=99.82 E-value=1.6e-18 Score=117.67 Aligned_cols=135 Identities=43% Similarity=0.755 Sum_probs=127.1
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCCC
Q psy7436 85 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDT 164 (243)
Q Consensus 85 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~~ 164 (243)
+..+++.+|...|.|++|.|..++++.++.++|...+++++..++.+... .|+|.-|+..+.......
T Consensus 30 QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~g------------PINft~FLTmfGekL~gt 97 (171)
T KOG0031|consen 30 QIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPG------------PINFTVFLTMFGEKLNGT 97 (171)
T ss_pred HHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCC------------CeeHHHHHHHHHHHhcCC
Confidence 45679999999999999999999999999999999999999999987653 389999999999999888
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q psy7436 165 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCV 231 (243)
Q Consensus 165 ~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 231 (243)
.+++.+..+|+.+|.+++|+|..+.++.+|..+|.++++++++.++..+-.+..|.++|..|+..+.
T Consensus 98 dpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 98 DPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred CHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999998776
No 9
>KOG0028|consensus
Probab=99.82 E-value=9.9e-19 Score=119.57 Aligned_cols=140 Identities=44% Similarity=0.692 Sum_probs=131.0
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCCC
Q psy7436 85 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDT 164 (243)
Q Consensus 85 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~~ 164 (243)
+...++..|..+|.+++|.|+..+|+.+++.+|+.....++..++..++.++.|. |+|++|...+.......
T Consensus 31 q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~--------i~fe~f~~~mt~k~~e~ 102 (172)
T KOG0028|consen 31 QKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGK--------ITFEDFRRVMTVKLGER 102 (172)
T ss_pred HHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCce--------echHHHHHHHHHHHhcc
Confidence 3467899999999999999999999999999999999999999999999987776 78889999988888877
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q psy7436 165 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVH 232 (243)
Q Consensus 165 ~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 232 (243)
.+.+.+..+|+.+|.+++|.|+..+|+++.+.+|.+++++++.++++.+|.+.+|.|+-+||...+..
T Consensus 103 dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 103 DTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred CcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 78899999999999999999999999999999999999999999999999999999999999987754
No 10
>KOG0037|consensus
Probab=99.80 E-value=4.3e-18 Score=122.80 Aligned_cols=151 Identities=28% Similarity=0.428 Sum_probs=123.1
Q ss_pred hhhhc--CCCCCcCHHHHHHHHHHcCC-CCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcC
Q psy7436 5 YGSLL--DGDGTITTKELGTVMRSLGQ-NPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMK 81 (243)
Q Consensus 5 ~f~~f--d~~g~i~~~ef~~~l~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~ 81 (243)
.|..+ |++|.|+.+|+.++|..... ..+.+-++.++..+ |.+.+|+|++.||..++..+
T Consensus 62 ~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mf----------------d~~~~G~i~f~EF~~Lw~~i-- 123 (221)
T KOG0037|consen 62 WFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMF----------------DRDNSGTIGFKEFKALWKYI-- 123 (221)
T ss_pred HHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHh----------------cCCCCCccCHHHHHHHHHHH--
Confidence 34444 78999999999999885432 34444444444444 44499999999999999765
Q ss_pred CcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhc
Q psy7436 82 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKM 161 (243)
Q Consensus 82 ~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~ 161 (243)
..|+.+|+.+|+|++|.|+..||.++|..+|..++++..+.+++.++....|. |.|.+|+.++..+
T Consensus 124 -----~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~--------i~FD~FI~ccv~L- 189 (221)
T KOG0037|consen 124 -----NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGR--------IDFDDFIQCCVVL- 189 (221)
T ss_pred -----HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCc--------eeHHHHHHHHHHH-
Confidence 45999999999999999999999999999999999999999999999764444 8888999999888
Q ss_pred CCCCcHHHHHHHHHhhcCCCCCccc--HHHHHHH
Q psy7436 162 KDTDSEEEIREAFRVFDKDGNGFIS--AAELRHV 193 (243)
Q Consensus 162 ~~~~~~~~~~~~f~~~D~~~~G~i~--~~e~~~~ 193 (243)
..+.++|+.+|.+..|.|+ .++|..+
T Consensus 190 ------~~lt~~Fr~~D~~q~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 190 ------QRLTEAFRRRDTAQQGSITISYDDFLQM 217 (221)
T ss_pred ------HHHHHHHHHhccccceeEEEeHHHHHHH
Confidence 8999999999999999654 4555443
No 11
>KOG0037|consensus
Probab=99.79 E-value=7.8e-18 Score=121.48 Aligned_cols=137 Identities=29% Similarity=0.469 Sum_probs=125.7
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCCC
Q psy7436 86 EEEIREAFRVFDKDGNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDT 164 (243)
Q Consensus 86 ~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~~ 164 (243)
...+...|...|.++.|.|+.+|++++|... ..+.+.+-+..|+..++.+.+|. |++.||..+|...
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~--------i~f~EF~~Lw~~i---- 123 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGT--------IGFKEFKALWKYI---- 123 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCc--------cCHHHHHHHHHHH----
Confidence 4467889999999999999999999999854 45688999999999999998776 7888999999998
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhccc
Q psy7436 165 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIMGNT 237 (243)
Q Consensus 165 ~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~ 237 (243)
..++.+|+.+|.|++|+|+..||+++|..+|..+++...+.+++.+|....|.|.|++|+.|+..+...+
T Consensus 124 ---~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt 193 (221)
T KOG0037|consen 124 ---NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLT 193 (221)
T ss_pred ---HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999977799999999999999876643
No 12
>PTZ00183 centrin; Provisional
Probab=99.78 E-value=2e-17 Score=119.45 Aligned_cols=134 Identities=51% Similarity=0.814 Sum_probs=118.5
Q ss_pred hhhhhhhc--CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhh
Q psy7436 2 IEEYGSLL--DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARK 79 (243)
Q Consensus 2 ~~~~f~~f--d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~ 79 (243)
+..+|..+ +++|+|+..||..+++.+|..++...+..++..++.+ ++|.|++.+|...+...
T Consensus 19 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~----------------~~g~i~~~eF~~~~~~~ 82 (158)
T PTZ00183 19 IREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKD----------------GSGKIDFEEFLDIMTKK 82 (158)
T ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC----------------CCCcEeHHHHHHHHHHH
Confidence 35567777 7899999999999999999889999999999999988 99999999999988765
Q ss_pred cCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHh
Q psy7436 80 MKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159 (243)
Q Consensus 80 ~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~ 159 (243)
.........+..+|..+|.+++|.|+..+|..++..++..++..++..++..++.+++|. |++.+|...+..
T Consensus 83 ~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~--------i~~~ef~~~~~~ 154 (158)
T PTZ00183 83 LGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGE--------ISEEEFYRIMKK 154 (158)
T ss_pred hcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCc--------CcHHHHHHHHhc
Confidence 444455678999999999999999999999999999999999999999999999997776 677799888754
No 13
>PTZ00184 calmodulin; Provisional
Probab=99.77 E-value=2.7e-17 Score=117.54 Aligned_cols=133 Identities=88% Similarity=1.269 Sum_probs=117.5
Q ss_pred hhhhhhhc--CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhh
Q psy7436 2 IEEYGSLL--DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARK 79 (243)
Q Consensus 2 ~~~~f~~f--d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~ 79 (243)
+..+|..+ +++|.|+.+||..++..++..++.+++..++..++.+ ++|.|+|++|..++...
T Consensus 13 ~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~----------------~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 13 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD----------------GNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcC----------------CCCcCcHHHHHHHHHHh
Confidence 34667777 8999999999999999999888999999999999988 99999999999998765
Q ss_pred cCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHH
Q psy7436 80 MKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMA 158 (243)
Q Consensus 80 ~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~ 158 (243)
.........+..+|..+|.+++|.|+..+|..++..++..++...+..++..++.+++|. |++.+|+..+.
T Consensus 77 ~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~--------i~~~ef~~~~~ 147 (149)
T PTZ00184 77 MKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQ--------INYEEFVKMMM 147 (149)
T ss_pred ccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCc--------CcHHHHHHHHh
Confidence 544455677899999999999999999999999999998999999999999999887776 77779987764
No 14
>KOG0030|consensus
Probab=99.76 E-value=6.3e-17 Score=108.09 Aligned_cols=143 Identities=41% Similarity=0.671 Sum_probs=125.3
Q ss_pred CcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhc
Q psy7436 82 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKM 161 (243)
Q Consensus 82 ~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~ 161 (243)
.++...+++.+|..||..++|.|+..+...+++.+|..+++.++......+..+.-+ .++++|++|+-.+.+..
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~------~~rl~FE~fLpm~q~va 79 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMN------VKRLDFEEFLPMYQQVA 79 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhh------hhhhhHHHHHHHHHHHH
Confidence 345668899999999999999999999999999999999999999999888766321 25689999999988875
Q ss_pred CC--CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q psy7436 162 KD--TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCV 231 (243)
Q Consensus 162 ~~--~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 231 (243)
.. ....+++-+-++.+|++++|+|...|++++|..+|..+++++++.+++... |++|.|.|+.|++.+.
T Consensus 80 knk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 80 KNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIM 150 (152)
T ss_pred hccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHh
Confidence 43 334577888999999999999999999999999999999999999999885 7889999999998764
No 15
>KOG4223|consensus
Probab=99.72 E-value=7.9e-17 Score=122.84 Aligned_cols=203 Identities=23% Similarity=0.348 Sum_probs=159.0
Q ss_pred CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcC-------C
Q psy7436 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMK-------D 82 (243)
Q Consensus 10 d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~-------~ 82 (243)
+++|.|+..|+..++...--.....+..+.|...+.+ .+|.|+++++......... .
T Consensus 89 ~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~----------------~Dg~i~~eey~~~~~~~~~~~~~~~d~ 152 (325)
T KOG4223|consen 89 DSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKN----------------KDGFITWEEYLPQTYGRVDLPDEFPDE 152 (325)
T ss_pred CCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------------ccceeeHHHhhhhhhhcccCccccccc
Confidence 7999999999999998775555667777778888888 9999999999988764210 0
Q ss_pred cc------cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHH
Q psy7436 83 TD------SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGE-KLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLT 155 (243)
Q Consensus 83 ~~------~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~ 155 (243)
.. ...+-+..|+..|.|++|.++.+||..+|..-.. ...+=.+..-+...|.|+||. |+++||+.
T Consensus 153 e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~--------I~~eEfig 224 (325)
T KOG4223|consen 153 EDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGK--------ISLEEFIG 224 (325)
T ss_pred hhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCc--------eeHHHHHh
Confidence 00 1133577899999999999999999999876432 344455677788889998887 67779998
Q ss_pred HHHhhcCCCCcH----HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q psy7436 156 MMARKMKDTDSE----EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCV 231 (243)
Q Consensus 156 ~~~~~~~~~~~~----~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 231 (243)
-+.......... ..-.+.+..+|+|++|+++.+|++.++-.-+......++..++...|.|+||++|++|-+.-..
T Consensus 225 d~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~~d 304 (325)
T KOG4223|consen 225 DLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEHYD 304 (325)
T ss_pred HHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhCcc
Confidence 776655422111 1234678889999999999999999998888888899999999999999999999999887665
Q ss_pred Hhhcc
Q psy7436 232 HIMGN 236 (243)
Q Consensus 232 ~~~~~ 236 (243)
.+.++
T Consensus 305 ~FvgS 309 (325)
T KOG4223|consen 305 VFVGS 309 (325)
T ss_pred eeeee
Confidence 55444
No 16
>KOG0031|consensus
Probab=99.72 E-value=6.3e-16 Score=105.14 Aligned_cols=129 Identities=41% Similarity=0.710 Sum_probs=119.1
Q ss_pred hhhhhhhc--CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhh
Q psy7436 2 IEEYGSLL--DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARK 79 (243)
Q Consensus 2 ~~~~f~~f--d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~ 79 (243)
++++|++. |+||.|+.++++..+..+|...+++++..++.. ..|.|+|.-|+..+...
T Consensus 34 fKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E--------------------a~gPINft~FLTmfGek 93 (171)
T KOG0031|consen 34 FKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE--------------------APGPINFTVFLTMFGEK 93 (171)
T ss_pred HHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh--------------------CCCCeeHHHHHHHHHHH
Confidence 46777777 899999999999999999999999999999987 56789999999999999
Q ss_pred cCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHH
Q psy7436 80 MKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMA 158 (243)
Q Consensus 80 ~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~ 158 (243)
+...++++.+..+|..||.+++|.|..+.++.+|...|.+.++++++.+++.+..+..|. ++|..|+..+.
T Consensus 94 L~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~--------~dy~~~~~~it 164 (171)
T KOG0031|consen 94 LNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGN--------FDYKAFTYIIT 164 (171)
T ss_pred hcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCc--------eeHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999886666 67779988876
No 17
>KOG0034|consensus
Probab=99.69 E-value=1.6e-15 Score=110.00 Aligned_cols=138 Identities=32% Similarity=0.601 Sum_probs=114.1
Q ss_pred cHHHHHHHHHhhcCC-CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCC
Q psy7436 85 SEEEIREAFRVFDKD-GNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKD 163 (243)
Q Consensus 85 ~~~~l~~~f~~~D~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~ 163 (243)
....+...|..++.+ ++|.|+.+||..+.... ......+++..++.+.+|. .|+|++|+..+......
T Consensus 31 EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~----~Np~~~rI~~~f~~~~~~~-------~v~F~~Fv~~ls~f~~~ 99 (187)
T KOG0034|consen 31 EIERLYERFKKLDRNNGDGYLTKEEFLSIPELA----LNPLADRIIDRFDTDGNGD-------PVDFEEFVRLLSVFSPK 99 (187)
T ss_pred HHHHHHHHHHHhccccccCccCHHHHHHHHHHh----cCcHHHHHHHHHhccCCCC-------ccCHHHHHHHHhhhcCC
Confidence 455688899999999 99999999999998442 3345667777787776554 18999999999998777
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCC--H----HHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q psy7436 164 TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLG-EKLT--D----EEVDEMIREADIDGDGQVNYEVYTIYCVHI 233 (243)
Q Consensus 164 ~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~-~~~~--~----~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 233 (243)
....+.+..+|+.||.+++|.|+++|+.++++.+. ...+ + ..++.++..+|.++||+|+++||++.+.+.
T Consensus 100 ~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 100 ASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred ccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 77777999999999999999999999999999883 2333 3 346667999999999999999999998865
No 18
>KOG0036|consensus
Probab=99.67 E-value=2.5e-15 Score=117.87 Aligned_cols=139 Identities=22% Similarity=0.404 Sum_probs=125.6
Q ss_pred ccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcC
Q psy7436 84 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK-LTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMK 162 (243)
Q Consensus 84 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~ 162 (243)
..+.+++.+|..+|.+++|.++..++...+..+..+ ........+++.++.+.+|. ++|.+|.+.+...
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~--------vDy~eF~~Y~~~~-- 80 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGR--------VDYSEFKRYLDNK-- 80 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCc--------ccHHHHHHHHHHh--
Confidence 345668999999999999999999999999998877 77888999999999998887 7778999988765
Q ss_pred CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhcc
Q psy7436 163 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIMGN 236 (243)
Q Consensus 163 ~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~ 236 (243)
+..+.++|+.+|.+.+|.|..+|+.+.|+.+|..+++++++.+++.+|.++.+.|+++||..++.....+
T Consensus 81 ----E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s 150 (463)
T KOG0036|consen 81 ----ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPES 150 (463)
T ss_pred ----HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCChh
Confidence 4778899999999999999999999999999999999999999999999999999999999988765543
No 19
>KOG2643|consensus
Probab=99.63 E-value=7.3e-15 Score=116.05 Aligned_cols=210 Identities=20% Similarity=0.278 Sum_probs=148.3
Q ss_pred hhhhhhc--CCCCCcCHHHHHHHHHHc------CCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHH
Q psy7436 3 EEYGSLL--DGDGTITTKELGTVMRSL------GQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLT 74 (243)
Q Consensus 3 ~~~f~~f--d~~g~i~~~ef~~~l~~l------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~ 74 (243)
+.+|++| |+||.|+.+||..+..-. |....+. ++..++-...-..-....+|+..+++++++++|+.
T Consensus 236 ~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~-----~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~ 310 (489)
T KOG2643|consen 236 RIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDH-----FTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLK 310 (489)
T ss_pred eeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccC-----ccccceehhhhhhhHHHHhhccCCCccccHHHHHH
Confidence 5689999 899999999999987433 2211111 00000000000111456678888999999999999
Q ss_pred HHHhhcCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCH---HHHHHHHHHhCcCCCCccccCCCCCCChH
Q psy7436 75 MMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTD---EEVDEMIREADIDGDGQVNYEGNGTIDFP 151 (243)
Q Consensus 75 ~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~---~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ 151 (243)
++... +.+-+..-|..+|...+|.|+..+|..++-.+...-+. ....++-+.+.... ..|++.
T Consensus 311 F~e~L-----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~---------~gISl~ 376 (489)
T KOG2643|consen 311 FQENL-----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDG---------KGISLQ 376 (489)
T ss_pred HHHHH-----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCC---------CCcCHH
Confidence 98766 44557778999999999999999999988765421111 13344555555432 237888
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q psy7436 152 EFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADIDGDGQVNYEVYTIYC 230 (243)
Q Consensus 152 ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 230 (243)
||..++.-...- ..+..|...| ....+.|+..+|+++.+.. |..+++..++.+|..+|.|+||.++++||+..+
T Consensus 377 Ef~~Ff~Fl~~l----~dfd~Al~fy-~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vm 451 (489)
T KOG2643|consen 377 EFKAFFRFLNNL----NDFDIALRFY-HMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVM 451 (489)
T ss_pred HHHHHHHHHhhh----hHHHHHHHHH-HHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHH
Confidence 888776655221 4455555555 3456779999999999865 799999999999999999999999999999999
Q ss_pred HHhhcc
Q psy7436 231 VHIMGN 236 (243)
Q Consensus 231 ~~~~~~ 236 (243)
.+.++.
T Consensus 452 k~Rmhr 457 (489)
T KOG2643|consen 452 KRRMHR 457 (489)
T ss_pred HHHhhc
Confidence 887765
No 20
>KOG0044|consensus
Probab=99.61 E-value=5.1e-14 Score=102.27 Aligned_cols=138 Identities=27% Similarity=0.524 Sum_probs=114.2
Q ss_pred cHHHHHHHHHhhcCC-CCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcC
Q psy7436 85 SEEEIREAFRVFDKD-GNGFISAAELRHVMTNLGE-KLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMK 162 (243)
Q Consensus 85 ~~~~l~~~f~~~D~~-~~g~i~~~e~~~~l~~~~~-~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~ 162 (243)
...+++..++.|-.+ ++|.++.++|+.++..+.. .-+...++.+|+.+|.+.+|. |+|.||+..+.....
T Consensus 24 ~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~--------i~F~Efi~als~~~r 95 (193)
T KOG0044|consen 24 SKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGT--------IDFLEFICALSLTSR 95 (193)
T ss_pred CHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCC--------cCHHHHHHHHHHHcC
Confidence 456677778777655 4999999999999999874 455677889999999997776 788899998887644
Q ss_pred CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh----CC-------CCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q psy7436 163 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL----GE-------KLTDEEVDEMIREADIDGDGQVNYEVYTIYCV 231 (243)
Q Consensus 163 ~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~----~~-------~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 231 (243)
...++.+.-+|+.+|.+++|.|++.|+..++.++ +. ...++.+..+|+.+|.|.||.||++||...+.
T Consensus 96 -Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 96 -GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred -CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 4455788899999999999999999999999876 21 12456789999999999999999999998765
No 21
>KOG0044|consensus
Probab=99.59 E-value=1.2e-13 Score=100.27 Aligned_cols=159 Identities=21% Similarity=0.334 Sum_probs=130.5
Q ss_pred CCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcCCcccHHHHHHH
Q psy7436 13 GTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREA 92 (243)
Q Consensus 13 g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~ 92 (243)
..++.+.+.++.+.- ..+..+++.+.+.+-..+ ++|.++.++|..++....+......-...+
T Consensus 7 ~~~~~~~~e~l~~~t--~f~~~ei~~~Yr~Fk~~c---------------P~G~~~~~~F~~i~~~~fp~gd~~~y~~~v 69 (193)
T KOG0044|consen 7 SKLQPESLEQLVQQT--KFSKKEIQQWYRGFKNEC---------------PSGRLTLEEFREIYASFFPDGDASKYAELV 69 (193)
T ss_pred ccCCcHHHHHHHHhc--CCCHHHHHHHHHHhcccC---------------CCCccCHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 345666666665543 579999999999988875 799999999999998877777778888999
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhc---C-------
Q psy7436 93 FRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKM---K------- 162 (243)
Q Consensus 93 f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~---~------- 162 (243)
|+.+|.+++|.|+..||..++..+-..-.++.+...|+.+|.+++|.| +..|++.++.... .
T Consensus 70 F~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~I--------t~~Eml~iv~~i~~m~~~~~~~~~ 141 (193)
T KOG0044|consen 70 FRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYI--------TKEEMLKIVQAIYQMTGSKALPED 141 (193)
T ss_pred HHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceE--------cHHHHHHHHHHHHHHcccccCCcc
Confidence 999999999999999999999887766778888899999999998885 5557777665532 2
Q ss_pred CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy7436 163 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTN 196 (243)
Q Consensus 163 ~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~ 196 (243)
....++....+|+.+|.|++|.||.+||...+..
T Consensus 142 ~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 142 EETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred cccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 2235577899999999999999999999998854
No 22
>KOG0030|consensus
Probab=99.58 E-value=6.8e-14 Score=93.72 Aligned_cols=134 Identities=43% Similarity=0.719 Sum_probs=111.9
Q ss_pred hhhhhhhc--CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhh
Q psy7436 2 IEEYGSLL--DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARK 79 (243)
Q Consensus 2 ~~~~f~~f--d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~ 79 (243)
++++|..| .+||+|+..+.-.+|+.+|.++|..++.+.+.......- .-.+++|++|+..++..
T Consensus 13 ~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~--------------~~~rl~FE~fLpm~q~v 78 (152)
T KOG0030|consen 13 FKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREM--------------NVKRLDFEEFLPMYQQV 78 (152)
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchh--------------hhhhhhHHHHHHHHHHH
Confidence 47889999 689999999999999999999999999999988765410 23679999999998866
Q ss_pred cCC--cccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHH
Q psy7436 80 MKD--TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMM 157 (243)
Q Consensus 80 ~~~--~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~ 157 (243)
... ....+.+-...+.||+.++|.|...+++.+|..+|..+++.+++.++.-.. +.+| .|+|+.|++.+
T Consensus 79 aknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG--------~i~YE~fVk~i 149 (152)
T KOG0030|consen 79 AKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNG--------CINYEAFVKHI 149 (152)
T ss_pred HhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCC--------cCcHHHHHHHH
Confidence 443 344567888899999999999999999999999999999999999997654 3334 47888999866
Q ss_pred H
Q psy7436 158 A 158 (243)
Q Consensus 158 ~ 158 (243)
.
T Consensus 150 ~ 150 (152)
T KOG0030|consen 150 M 150 (152)
T ss_pred h
Confidence 4
No 23
>KOG0036|consensus
Probab=99.49 E-value=1.6e-12 Score=102.38 Aligned_cols=157 Identities=21% Similarity=0.384 Sum_probs=126.9
Q ss_pred hhhhhhhc--CCCCCcCHHHHHHHHHHcCCC-CCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHh
Q psy7436 2 IEEYGSLL--DGDGTITTKELGTVMRSLGQN-PTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMAR 78 (243)
Q Consensus 2 ~~~~f~~f--d~~g~i~~~ef~~~l~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~ 78 (243)
++.+|..| +++|.++..++...+..+..+ ....-...+++.++.+ .+|.++|+||...+..
T Consensus 16 ~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~----------------~dg~vDy~eF~~Y~~~ 79 (463)
T KOG0036|consen 16 IRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDAN----------------RDGRVDYSEFKRYLDN 79 (463)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccC----------------cCCcccHHHHHHHHHH
Confidence 45678888 699999999999999999887 5666777899999999 9999999999999965
Q ss_pred hcCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHH
Q psy7436 79 KMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMA 158 (243)
Q Consensus 79 ~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~ 158 (243)
.+.++..+|...|.++||.|...|+.+.+..+|..+++++++.+++.++.++++. |+++|+.....
T Consensus 80 ------~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~--------I~~~e~rd~~l 145 (463)
T KOG0036|consen 80 ------KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKAT--------IDLEEWRDHLL 145 (463)
T ss_pred ------hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCee--------eccHHHHhhhh
Confidence 3667899999999999999999999999999999999999999999999997776 56667776654
Q ss_pred hhcCCCCcHHHHHHHH------HhhcCCCCCcccHHHHHHHH
Q psy7436 159 RKMKDTDSEEEIREAF------RVFDKDGNGFISAAELRHVM 194 (243)
Q Consensus 159 ~~~~~~~~~~~~~~~f------~~~D~~~~G~i~~~e~~~~l 194 (243)
-.. ...+..++ ..+|...+..|+ +++...-
T Consensus 146 l~p-----~s~i~di~~~W~h~~~idigE~~~iP-dg~s~~e 181 (463)
T KOG0036|consen 146 LYP-----ESDLEDIYDFWRHVLLIDIGEDAVLP-DGDSKLE 181 (463)
T ss_pred cCC-----hhHHHHHHHhhhhheEEEccccccCC-cchHHHH
Confidence 431 23333332 236777777777 5554433
No 24
>KOG0034|consensus
Probab=99.44 E-value=4.2e-12 Score=92.31 Aligned_cols=122 Identities=40% Similarity=0.735 Sum_probs=97.5
Q ss_pred CCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCc-cchHHHHHHHHhhcCCcccHHHH
Q psy7436 11 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGT-IDFPEFLTMMARKMKDTDSEEEI 89 (243)
Q Consensus 11 ~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~ef~~~~~~~~~~~~~~~~l 89 (243)
++|+|+.+||..+. .+..++ -...++..++.. ++|. |++++|...++..+.......++
T Consensus 47 ~~g~lt~eef~~i~-~~~~Np---~~~rI~~~f~~~----------------~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl 106 (187)
T KOG0034|consen 47 GDGYLTKEEFLSIP-ELALNP---LADRIIDRFDTD----------------GNGDPVDFEEFVRLLSVFSPKASKREKL 106 (187)
T ss_pred ccCccCHHHHHHHH-HHhcCc---HHHHHHHHHhcc----------------CCCCccCHHHHHHHHhhhcCCccHHHHH
Confidence 88999999999998 333333 244455556655 6666 99999999999888877777899
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCC--H----HHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhh
Q psy7436 90 REAFRVFDKDGNGFISAAELRHVMTNL-GEKLT--D----EEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARK 160 (243)
Q Consensus 90 ~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~--~----~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~ 160 (243)
+-+|+.||.+++|.|+.+|+.+++..+ +...+ + +.++.++..+|.++||. |+++||.+++...
T Consensus 107 ~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~--------IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 107 RFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGK--------ISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCc--------CcHHHHHHHHHcC
Confidence 999999999999999999999999886 33333 3 45677889999998887 7888999998765
No 25
>KOG2562|consensus
Probab=99.43 E-value=2.4e-12 Score=102.86 Aligned_cols=216 Identities=19% Similarity=0.285 Sum_probs=155.1
Q ss_pred hhhhhc--CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHH-hhc
Q psy7436 4 EYGSLL--DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMA-RKM 80 (243)
Q Consensus 4 ~~f~~f--d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~-~~~ 80 (243)
++++.. .+.|++...+|+..|..+-.+++ -++...-+.+...+...++.+.+...+..++|+|...+.++--. ..+
T Consensus 178 ~~v~~l~~~~~~yl~q~df~~~Lqeli~Thp-l~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~l 256 (493)
T KOG2562|consen 178 QFVNLLIQAGCSYLRQDDFKPYLQELIATHP-LEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSNLLDAL 256 (493)
T ss_pred HHHHHHhccCccceeccccHHHHHHHHhcCC-chhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhHHHHHH
Confidence 444444 67788888888888877644444 34445555566667788899999999999999999999764311 111
Q ss_pred CCcccH------------HHHHHH---HHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCC
Q psy7436 81 KDTDSE------------EEIREA---FRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGN 145 (243)
Q Consensus 81 ~~~~~~------------~~l~~~---f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~ 145 (243)
.....+ +-...+ |-.+|++++|.|+.+++...-.. .++.-.++++|...... .+.. ..
T Consensus 257 ~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~---~~~~-~e 329 (493)
T KOG2562|consen 257 LELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRG---FTVK-VE 329 (493)
T ss_pred HHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhcccc---ceee-ec
Confidence 000011 112333 67789999999999999887644 35788899999844433 2222 46
Q ss_pred CCCChHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-------C-CCC-CHHHHHHHHHhcCCC
Q psy7436 146 GTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL-------G-EKL-TDEEVDEMIREADID 216 (243)
Q Consensus 146 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~-------~-~~~-~~~~~~~~~~~~d~~ 216 (243)
|+|+|++|+-++.+... .....-+...|+.+|.+++|.|+..|++.+.+.. + ..+ =++.++++++++.+.
T Consensus 330 GrmdykdFv~FilA~e~-k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~ 408 (493)
T KOG2562|consen 330 GRMDYKDFVDFILAEED-KDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPE 408 (493)
T ss_pred CcccHHHHHHHHHHhcc-CCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcc
Confidence 66999999999988743 3344678999999999999999999997766543 3 122 267789999999999
Q ss_pred CCCcccHHHHHH
Q psy7436 217 GDGQVNYEVYTI 228 (243)
Q Consensus 217 ~~g~i~~~eF~~ 228 (243)
..++|++.+|..
T Consensus 409 ~~~kItLqDlk~ 420 (493)
T KOG2562|consen 409 DENKITLQDLKG 420 (493)
T ss_pred CCCceeHHHHhh
Confidence 999999999987
No 26
>KOG4251|consensus
Probab=99.41 E-value=1.5e-12 Score=95.77 Aligned_cols=217 Identities=19% Similarity=0.276 Sum_probs=147.3
Q ss_pred hhhhhhhc--CCCCCcCHHHHHHHHHHcC---CCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHH
Q psy7436 2 IEEYGSLL--DGDGTITTKELGTVMRSLG---QNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMM 76 (243)
Q Consensus 2 ~~~~f~~f--d~~g~i~~~ef~~~l~~l~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~ 76 (243)
|..+|+.. |.+|+||..|+++++..-. +.-+..+.+.-|+..|++ ++|.|+++||...+
T Consensus 103 lmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpd----------------gDGhvsWdEykvkF 166 (362)
T KOG4251|consen 103 LMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPD----------------GDGHVSWDEYKVKF 166 (362)
T ss_pred HHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCC----------------CCCceehhhhhhHH
Confidence 45677777 8999999999999987531 111223333344455555 99999999999877
Q ss_pred HhhcCCcccHH-------------HHHHHHHhhcCCCCC---------cccHHHHHHHHHHh-CCCCCHHHHHHHHHHhC
Q psy7436 77 ARKMKDTDSEE-------------EIREAFRVFDKDGNG---------FISAAELRHVMTNL-GEKLTDEEVDEMIREAD 133 (243)
Q Consensus 77 ~~~~~~~~~~~-------------~l~~~f~~~D~~~~g---------~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~~ 133 (243)
........... .-.+.|..-+.+..+ .++..||..+|..- ....-...+..+++.++
T Consensus 167 laskghsekevadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlD 246 (362)
T KOG4251|consen 167 LASKGHSEKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLD 246 (362)
T ss_pred HhhcCcchHHHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhc
Confidence 64433222111 112223223333333 45557887777532 22234456788999999
Q ss_pred cCCCCccccCCCCCCChHHHHHHHHhhcCCCC--------cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHH
Q psy7436 134 IDGDGQVNYEGNGTIDFPEFLTMMARKMKDTD--------SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 205 (243)
Q Consensus 134 ~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~~~--------~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~ 205 (243)
.++|..+ +..+|+........... ..+..++.-..+|.+.+|.+|.+|+..+...+++.+.-.+
T Consensus 247 qdgDkql--------SvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne 318 (362)
T KOG4251|consen 247 QDGDKQL--------SVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNE 318 (362)
T ss_pred cCCCeee--------cchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHH
Confidence 9988774 44477765443322111 1133555666789999999999999999998888888899
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHhhcccccccC
Q psy7436 206 VDEMIREADIDGDGQVNYEVYTIYCVHIMGNTYLKIR 242 (243)
Q Consensus 206 ~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~ 242 (243)
+..++...|.|++.+++.++.+.+-..+.++..++.+
T Consensus 319 ~~~~ma~~d~n~~~~Ls~eell~r~~~~~rSsLlsar 355 (362)
T KOG4251|consen 319 VNDIMALTDANNDEKLSLEELLERDWLLARSSLLSAR 355 (362)
T ss_pred HHHHHhhhccCCCcccCHHHHHHHHhhhcccHHHHHH
Confidence 9999999999999999999999988888777766543
No 27
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.37 E-value=3.6e-12 Score=77.80 Aligned_cols=61 Identities=43% Similarity=0.911 Sum_probs=54.1
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHH----HHHHHHHhcCCCCCCcccHHHHHHHH
Q psy7436 170 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE----EVDEMIREADIDGDGQVNYEVYTIYC 230 (243)
Q Consensus 170 ~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~----~~~~~~~~~d~~~~g~i~~~eF~~~~ 230 (243)
+..+|+.+|.+++|.|+.+||..++..++...++. .+..+++.+|+|++|.|+|+||+.++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 67899999999999999999999999998766554 45555999999999999999999875
No 28
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.35 E-value=4.3e-12 Score=81.21 Aligned_cols=68 Identities=21% Similarity=0.386 Sum_probs=62.2
Q ss_pred HHHHHHHHhhcC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHhcCCCCCCcccHHHHHHHHHHhhc
Q psy7436 168 EEIREAFRVFDK-DGNGFISAAELRHVMTN-LGEKLTD-EEVDEMIREADIDGDGQVNYEVYTIYCVHIMG 235 (243)
Q Consensus 168 ~~~~~~f~~~D~-~~~G~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~ 235 (243)
..+..+|+.+|. +++|+|+..||+.+++. +|..++. .++..+++.+|.|+||+|+|+||+..+..+..
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 567889999999 99999999999999999 8877888 99999999999999999999999998886643
No 29
>KOG4223|consensus
Probab=99.28 E-value=3.7e-11 Score=92.21 Aligned_cols=163 Identities=21% Similarity=0.351 Sum_probs=123.2
Q ss_pred CCCccchHHHHHHHHhhcCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCcccc
Q psy7436 63 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 142 (243)
Q Consensus 63 ~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~ 142 (243)
+...+.-.++....- .+.......++..++...|.+++|.|+.+++..++...........+..-+..++.+.+|.|
T Consensus 54 he~~~~d~e~~~~fd-~l~~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i-- 130 (325)
T KOG4223|consen 54 HEAFLGDDEFADEFD-QLTPEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFI-- 130 (325)
T ss_pred ccccccchhhhhhhh-hhCcchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccee--
Confidence 444455566666553 34555678889999999999999999999999998876655667778888889999988874
Q ss_pred CCCCCCChHHHHHHHHhhcC-------CCCc------HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHH
Q psy7436 143 EGNGTIDFPEFLTMMARKMK-------DTDS------EEEIREAFRVFDKDGNGFISAAELRHVMTNLG-EKLTDEEVDE 208 (243)
Q Consensus 143 ~~~~~i~~~ef~~~~~~~~~-------~~~~------~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~~~~~~ 208 (243)
+|+++......... .... ...-.+-|+.-|.|++|.++++||..+|..-. ..+.+-.+.+
T Consensus 131 ------~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~E 204 (325)
T KOG4223|consen 131 ------TWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAE 204 (325)
T ss_pred ------eHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHH
Confidence 55576665543210 0000 01246789999999999999999999997654 4466778899
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHhh
Q psy7436 209 MIREADIDGDGQVNYEVYTIYCVHIM 234 (243)
Q Consensus 209 ~~~~~d~~~~g~i~~~eF~~~~~~~~ 234 (243)
.+.-+|.|+||+|+++||+.=+-...
T Consensus 205 tl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 205 TLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHhhcccCCCCceeHHHHHhHHhhcc
Confidence 99999999999999999998666544
No 30
>KOG0377|consensus
Probab=99.28 E-value=8.5e-11 Score=93.54 Aligned_cols=143 Identities=22% Similarity=0.400 Sum_probs=102.7
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCcCCCCccccCCC-CCCChHHHH-----HHHH
Q psy7436 86 EEEIREAFRVFDKDGNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADIDGDGQVNYEGN-GTIDFPEFL-----TMMA 158 (243)
Q Consensus 86 ~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~i~~~~~-~~i~~~ef~-----~~~~ 158 (243)
...+...|+.+|..+.|.|+...+..++..+ |..+ ++...--+....+.+|.+.|... ..+.-+.-. ..+.
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~L--PWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slve 540 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNL--PWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVE 540 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCC--cHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHH
Confidence 3458889999999999999999999999875 4333 33333444455666666655411 001111111 1111
Q ss_pred hhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q psy7436 159 RKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL----GEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHI 233 (243)
Q Consensus 159 ~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 233 (243)
.+.. ....+..+|+.+|.|++|.|+.+||+.+++-+ +..+++.++.++.+.+|.|+||+|++.||+..+...
T Consensus 541 tLYr---~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 541 TLYR---NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHh---chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 1111 12457889999999999999999999999865 467899999999999999999999999999987643
No 31
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.25 E-value=5.2e-11 Score=76.37 Aligned_cols=67 Identities=22% Similarity=0.537 Sum_probs=61.3
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q psy7436 168 EEIREAFRVFD-KDGNG-FISAAELRHVMTN-----LGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIM 234 (243)
Q Consensus 168 ~~~~~~f~~~D-~~~~G-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 234 (243)
..+..+|+.+| .+++| .|+.+||+.+|+. +|...+++++..+++.+|.|++|+|+|++|+.++....
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 55789999998 79999 6999999999999 88888999999999999999999999999998887654
No 32
>PLN02964 phosphatidylserine decarboxylase
Probab=99.22 E-value=3e-10 Score=97.02 Aligned_cols=135 Identities=20% Similarity=0.325 Sum_probs=105.8
Q ss_pred CCCccchHHHHHHHHh--hcCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHH---HHHHHHHhCcCC
Q psy7436 63 GNGTIDFPEFLTMMAR--KMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLG-EKLTDEE---VDEMIREADIDG 136 (243)
Q Consensus 63 ~~g~i~~~ef~~~~~~--~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~---~~~l~~~~~~~~ 136 (243)
...++++++....+.. ......+..++..+|..+|++++|.+ +..++..+| ...++.+ +..++..+|.++
T Consensus 117 ~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~Dg 192 (644)
T PLN02964 117 ETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDE 192 (644)
T ss_pred ecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 3566777777766543 12223455778999999999999997 888888888 4777776 799999999997
Q ss_pred CCccccCCCCCCChHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-------------hCCCCCH
Q psy7436 137 DGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTN-------------LGEKLTD 203 (243)
Q Consensus 137 ~~~i~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~-------------~~~~~~~ 203 (243)
+|. |++.||+.++.... .....+.+..+|+.+|.+++|.|+.+||..++.. ++..++.
T Consensus 193 dG~--------IdfdEFl~lL~~lg-~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~ 263 (644)
T PLN02964 193 DGQ--------LSFSEFSDLIKAFG-NLVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGV 263 (644)
T ss_pred CCe--------EcHHHHHHHHHHhc-cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccc
Confidence 776 77889999988653 4456788999999999999999999999999988 5655655
Q ss_pred -HHHHHHH
Q psy7436 204 -EEVDEMI 210 (243)
Q Consensus 204 -~~~~~~~ 210 (243)
++++.+.
T Consensus 264 ~~~~~~ii 271 (644)
T PLN02964 264 SDKLNAMI 271 (644)
T ss_pred hhhHHHHH
Confidence 5555555
No 33
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.19 E-value=1.6e-10 Score=74.08 Aligned_cols=67 Identities=22% Similarity=0.502 Sum_probs=60.1
Q ss_pred HHHHHHHHhhcC-CC-CCcccHHHHHHHHH---HhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q psy7436 168 EEIREAFRVFDK-DG-NGFISAAELRHVMT---NLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIM 234 (243)
Q Consensus 168 ~~~~~~f~~~D~-~~-~G~i~~~e~~~~l~---~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 234 (243)
..+..+|..||. ++ +|+|+.+||+.++. .+|..++++++.++++.+|.|++|+|+|+||+.++..+.
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 456789999997 67 89999999999997 368889999999999999999999999999999887654
No 34
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.17 E-value=1.6e-10 Score=67.36 Aligned_cols=52 Identities=37% Similarity=0.678 Sum_probs=49.1
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q psy7436 181 GNGFISAAELRHVMTNLGEK-LTDEEVDEMIREADIDGDGQVNYEVYTIYCVH 232 (243)
Q Consensus 181 ~~G~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 232 (243)
.+|.|+.++|+.+|..+|.. +++.++..++..+|.+++|+|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888998 99999999999999999999999999999875
No 35
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.13 E-value=5.1e-10 Score=72.86 Aligned_cols=67 Identities=24% Similarity=0.562 Sum_probs=59.1
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-hC----CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q psy7436 168 EEIREAFRVFD-KDGNG-FISAAELRHVMTN-LG----EKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIM 234 (243)
Q Consensus 168 ~~~~~~f~~~D-~~~~G-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 234 (243)
+.+.++|+.+| .+++| .|+..||+.+|+. +| ...++.++..+++.+|.+++|.|+|++|+.++..+.
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 66889999997 99999 5999999999986 44 346889999999999999999999999999887654
No 36
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.11 E-value=6.8e-10 Score=72.19 Aligned_cols=68 Identities=16% Similarity=0.390 Sum_probs=58.2
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhc
Q psy7436 168 EEIREAFRVFD-KDGNG-FISAAELRHVMTNL-----GEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIMG 235 (243)
Q Consensus 168 ~~~~~~f~~~D-~~~~G-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~ 235 (243)
..+.++|+.+| .+++| +|+..||+.++... ....++.++..+++.+|.|++|.|+|+||+..+..+..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~ 84 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTV 84 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 45678899998 78998 69999999999773 23347789999999999999999999999999887643
No 37
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.10 E-value=6.4e-10 Score=72.68 Aligned_cols=66 Identities=26% Similarity=0.495 Sum_probs=58.9
Q ss_pred HHHHHHHHhhcC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q psy7436 168 EEIREAFRVFDK-DG-NGFISAAELRHVMTN-----LGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHI 233 (243)
Q Consensus 168 ~~~~~~f~~~D~-~~-~G~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 233 (243)
..+..+|..+|. ++ +|.|+..|++.+++. ++..+++.++..++..+|.+++|.|+|++|+..+...
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 567889999997 87 799999999999986 4667899999999999999999999999999887744
No 38
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.09 E-value=6.8e-10 Score=67.83 Aligned_cols=61 Identities=33% Similarity=0.520 Sum_probs=56.1
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q psy7436 171 REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHI 233 (243)
Q Consensus 171 ~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 233 (243)
+.+|..+|.+++|.|+.+|+..+++.+| ++.+++..+++.+|.+++|.|+|++|+..+...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 4689999999999999999999999987 488999999999999999999999999888654
No 39
>PLN02964 phosphatidylserine decarboxylase
Probab=99.05 E-value=2.9e-09 Score=91.15 Aligned_cols=107 Identities=25% Similarity=0.454 Sum_probs=87.9
Q ss_pred hhhhhhhc--CCCCCcCHHHHHHHHHHcC-CCCCHHH---HHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHH
Q psy7436 2 IEEYGSLL--DGDGTITTKELGTVMRSLG-QNPTEAE---LQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTM 75 (243)
Q Consensus 2 ~~~~f~~f--d~~g~i~~~ef~~~l~~l~-~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~ 75 (243)
+.++|..| |++|++ +..+++.+| ..+++.+ +..++..+|.+ ++|.|+++||+.+
T Consensus 145 lkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~D----------------gdG~IdfdEFl~l 204 (644)
T PLN02964 145 ACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYD----------------EDGQLSFSEFSDL 204 (644)
T ss_pred HHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCC----------------CCCeEcHHHHHHH
Confidence 35667777 778886 999999999 5888887 78899999888 9999999999999
Q ss_pred HHhhcCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-------------hCCCCCH-HHHHHHH
Q psy7436 76 MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTN-------------LGEKLTD-EEVDEMI 129 (243)
Q Consensus 76 ~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~-------------~~~~~~~-~~~~~l~ 129 (243)
+... ......+++..+|+.+|.+++|.|+.+||..++.. ++..++. +++..+.
T Consensus 205 L~~l-g~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~ii 271 (644)
T PLN02964 205 IKAF-GNLVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMI 271 (644)
T ss_pred HHHh-ccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHH
Confidence 8754 34566788999999999999999999999999988 5555555 4555544
No 40
>KOG0751|consensus
Probab=99.04 E-value=1.9e-08 Score=81.48 Aligned_cols=163 Identities=21% Similarity=0.301 Sum_probs=115.9
Q ss_pred ccchhhhhhhhhhhccCCCccchHHHHHHHHhhcCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC------CC
Q psy7436 47 ENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGE------KL 120 (243)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~------~~ 120 (243)
.+.+.++.+-...|+.++|.|||+||..+-. .+ +.+......+|..||..++|.++.+++..++..... ..
T Consensus 71 ~n~~~v~Lla~iaD~tKDglisf~eF~afe~-~l--C~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~ 147 (694)
T KOG0751|consen 71 FNDKIVRLLASIADQTKDGLISFQEFRAFES-VL--CAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNW 147 (694)
T ss_pred CChHHHHHHHhhhhhcccccccHHHHHHHHh-hc--cCchHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccC
Confidence 3344455555555556999999999998653 33 344677888999999999999999999999987542 22
Q ss_pred CHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC
Q psy7436 121 TDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 200 (243)
Q Consensus 121 ~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~ 200 (243)
+.+.+...| ... ....++|.+|.+.+..... +.-.++|+..|+.++|.|+.=+|+.++-.....
T Consensus 148 d~efI~~~F---g~~--------~~r~~ny~~f~Q~lh~~~~-----E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h 211 (694)
T KOG0751|consen 148 DSEFIKLHF---GDI--------RKRHLNYAEFTQFLHEFQL-----EHAEQAFREKDKAKNGFISVLDFQDIMVTIRIH 211 (694)
T ss_pred CcchHHHHh---hhH--------HHHhccHHHHHHHHHHHHH-----HHHHHHHHHhcccCCCeeeeechHhhhhhhhhh
Confidence 233333333 222 1234799999999988743 567889999999999999999999999887655
Q ss_pred CCHHHHHHHHHhc-CCCCCCcccHHHHHH
Q psy7436 201 LTDEEVDEMIREA-DIDGDGQVNYEVYTI 228 (243)
Q Consensus 201 ~~~~~~~~~~~~~-d~~~~g~i~~~eF~~ 228 (243)
+....+++.+-.. ..+...++++..|..
T Consensus 212 ~lt~~v~~nlv~vagg~~~H~vSf~yf~a 240 (694)
T KOG0751|consen 212 LLTPFVEENLVSVAGGNDSHQVSFSYFNA 240 (694)
T ss_pred cCCHHHhhhhhhhcCCCCccccchHHHHH
Confidence 5555666655554 344444688777653
No 41
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.04 E-value=2.1e-09 Score=70.56 Aligned_cols=64 Identities=23% Similarity=0.470 Sum_probs=59.2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q psy7436 168 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHI 233 (243)
Q Consensus 168 ~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 233 (243)
..+..+|..+|.+++|.|+.+|+..+++..+ ++++++..++..+|.+.+|.|+|+||+.++...
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 5688999999999999999999999999976 788999999999999999999999999887754
No 42
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.01 E-value=2.5e-09 Score=69.03 Aligned_cols=67 Identities=21% Similarity=0.468 Sum_probs=59.1
Q ss_pred HHHHHHHHhhcC--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q psy7436 168 EEIREAFRVFDK--DGNGFISAAELRHVMTN-LGEK----LTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIM 234 (243)
Q Consensus 168 ~~~~~~f~~~D~--~~~G~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 234 (243)
..+..+|..+|. +++|.|+.+||..+++. +|.. .+..++..++..+|.+++|.|+|++|+.++....
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 568889999999 89999999999999986 4543 3589999999999999999999999999888653
No 43
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.00 E-value=3.2e-09 Score=63.48 Aligned_cols=61 Identities=56% Similarity=0.967 Sum_probs=57.3
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q psy7436 170 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYC 230 (243)
Q Consensus 170 ~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 230 (243)
+..+|..+|.+++|.|+.+|+..+++.++.+.+...+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4578999999999999999999999999999999999999999999999999999998765
No 44
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.99 E-value=5e-09 Score=67.32 Aligned_cols=67 Identities=21% Similarity=0.368 Sum_probs=57.8
Q ss_pred HHHHHHHHh-hcCCCCC-cccHHHHHHHHHHhC-----CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q psy7436 168 EEIREAFRV-FDKDGNG-FISAAELRHVMTNLG-----EKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIM 234 (243)
Q Consensus 168 ~~~~~~f~~-~D~~~~G-~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 234 (243)
..+..+|+. .|.+++| +|+.+||+.++.... ...++.++..+++.+|.|+||.|+|+||+.++..+.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 567789999 6788876 999999999998863 345678999999999999999999999999887653
No 45
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.98 E-value=2.7e-09 Score=64.95 Aligned_cols=62 Identities=53% Similarity=1.018 Sum_probs=50.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHH----HHHHHHHhCcCCCCccccCCCCCCChHHHHHHH
Q psy7436 88 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE----VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMM 157 (243)
Q Consensus 88 ~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~----~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~ 157 (243)
+++.+|..+|.+++|.|+.+||..++..++...++.. +..+++.+|.+++|. |++.||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~--------i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGR--------ISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSS--------EEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCC--------CcHHHHhccC
Confidence 3678999999999999999999999999887665544 455599999998887 5666888764
No 46
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.97 E-value=2e-09 Score=62.72 Aligned_cols=52 Identities=40% Similarity=0.727 Sum_probs=48.7
Q ss_pred CCCCcCHHHHHHHHHHcCCC-CCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHh
Q psy7436 11 GDGTITTKELGTVMRSLGQN-PTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMAR 78 (243)
Q Consensus 11 ~~g~i~~~ef~~~l~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~ 78 (243)
++|.|+.++|+.+|..+|.. +++.++..++..+|.+ ++|.|+|+||+..+..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~----------------~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTD----------------GDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTS----------------SSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccC----------------CCCCCCHHHHHHHHHh
Confidence 47999999999999889999 9999999999999999 9999999999998753
No 47
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.96 E-value=4.8e-09 Score=67.19 Aligned_cols=66 Identities=24% Similarity=0.490 Sum_probs=59.5
Q ss_pred HHHHHHHHhhcC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhh
Q psy7436 87 EEIREAFRVFDK-DGNGFISAAELRHVMTN-LGEKLTD-EEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARK 160 (243)
Q Consensus 87 ~~l~~~f~~~D~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~ 160 (243)
..+..+|+.||. +++|.|+..||+.++.. ++..++. .++..+++..|.|+||. |+|+||+..+...
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~--------I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSK--------LSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCC--------CcHHHHHHHHHHH
Confidence 458899999999 99999999999999999 8877888 99999999999998887 7888999988765
No 48
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.91 E-value=8.2e-09 Score=69.45 Aligned_cols=61 Identities=18% Similarity=0.370 Sum_probs=54.1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q psy7436 168 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVH 232 (243)
Q Consensus 168 ~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 232 (243)
..+..+|..+|.|++|.|+.+|+..+. + ...+..+..++..+|.|+||.||++||..++..
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR--L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH--c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 668889999999999999999999876 2 245778899999999999999999999999943
No 49
>KOG0038|consensus
Probab=98.89 E-value=1.7e-08 Score=68.63 Aligned_cols=102 Identities=29% Similarity=0.562 Sum_probs=84.2
Q ss_pred HHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCC
Q psy7436 124 EVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLG-EKLT 202 (243)
Q Consensus 124 ~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~-~~~~ 202 (243)
.-+++...+..++.|. ++|+.|+..+....+.....-.+..+|+.+|-++++.|...++...+..+- ..++
T Consensus 72 fk~ri~e~FSeDG~Gn--------lsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs 143 (189)
T KOG0038|consen 72 FKRRICEVFSEDGRGN--------LSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELS 143 (189)
T ss_pred HHHHHHHHhccCCCCc--------ccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCC
Confidence 3456677777775554 888899999998887776667788999999999999999999999999884 4577
Q ss_pred HHHHH----HHHHhcCCCCCCcccHHHHHHHHHHh
Q psy7436 203 DEEVD----EMIREADIDGDGQVNYEVYTIYCVHI 233 (243)
Q Consensus 203 ~~~~~----~~~~~~d~~~~g~i~~~eF~~~~~~~ 233 (243)
++++. .+++..|.++||++++.||...+.+.
T Consensus 144 ~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 144 DEEVELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 77654 45777899999999999999887753
No 50
>KOG2643|consensus
Probab=98.88 E-value=2.4e-08 Score=79.82 Aligned_cols=155 Identities=20% Similarity=0.275 Sum_probs=111.9
Q ss_pred CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcCCc--ccHH
Q psy7436 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDT--DSEE 87 (243)
Q Consensus 10 d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~--~~~~ 87 (243)
+++|+++.++|.++++.|. .+..+--+..++.. .+|.|+-.+|..++....... ....
T Consensus 298 rg~~kLs~deF~~F~e~Lq----~Eil~lEF~~~~~~----------------~~g~Ise~DFA~~lL~~a~~n~~~k~~ 357 (489)
T KOG2643|consen 298 RGNGKLSIDEFLKFQENLQ----EEILELEFERFDKG----------------DSGAISEVDFAELLLAYAGVNSKKKHK 357 (489)
T ss_pred CCCccccHHHHHHHHHHHH----HHHHHHHHHHhCcc----------------cccccCHHHHHHHHHHHcccchHhHHH
Confidence 8999999999999999774 33333345666665 779999999999987665322 2233
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCCCCcH
Q psy7436 88 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSE 167 (243)
Q Consensus 88 ~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~~~~~ 167 (243)
.++.+-+.++.+ ...|+..|+..+.+-+.. +. +++..+..+-.. ...|+..+|..............
T Consensus 358 ~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~-l~--dfd~Al~fy~~A---------g~~i~~~~f~raa~~vtGveLSd 424 (489)
T KOG2643|consen 358 YLKRVKEKFKDD-GKGISLQEFKAFFRFLNN-LN--DFDIALRFYHMA---------GASIDEKTFQRAAKVVTGVELSD 424 (489)
T ss_pred HHHHHHHhccCC-CCCcCHHHHHHHHHHHhh-hh--HHHHHHHHHHHc---------CCCCCHHHHHHHHHHhcCccccc
Confidence 466666777655 567999999998877643 22 233333322211 11278889999888877766665
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q psy7436 168 EEIREAFRVFDKDGNGFISAAELRHVMTNL 197 (243)
Q Consensus 168 ~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~ 197 (243)
..+.-+|..+|.|++|.|+.+||..++++-
T Consensus 425 hVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 425 HVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred ceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 677889999999999999999999999763
No 51
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.87 E-value=2.4e-08 Score=64.03 Aligned_cols=66 Identities=30% Similarity=0.592 Sum_probs=58.6
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHh
Q psy7436 87 EEIREAFRVFD-KDGNG-FISAAELRHVMTN-----LGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159 (243)
Q Consensus 87 ~~l~~~f~~~D-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~ 159 (243)
..+..+|..+| .+++| .|+.++|+.+++. ++...++.++..+++.++.+++|. |+|++|+.++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~--------v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGE--------CDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCc--------CcHHHHHHHHHH
Confidence 45889999998 79999 6999999999999 888889999999999999998777 788899988765
Q ss_pred h
Q psy7436 160 K 160 (243)
Q Consensus 160 ~ 160 (243)
.
T Consensus 80 ~ 80 (88)
T cd05027 80 V 80 (88)
T ss_pred H
Confidence 4
No 52
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.84 E-value=2e-08 Score=64.61 Aligned_cols=66 Identities=18% Similarity=0.447 Sum_probs=57.1
Q ss_pred HHHHHHHHhhcCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q psy7436 168 EEIREAFRVFDKD--GNGFISAAELRHVMT-NLGEKLT----DEEVDEMIREADIDGDGQVNYEVYTIYCVHI 233 (243)
Q Consensus 168 ~~~~~~f~~~D~~--~~G~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 233 (243)
..+...|+.++.. .+|.|+.+||+.++. .++..++ +.+++.++..+|.+++|.|+|++|+..+...
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4567889999866 479999999999997 5555566 8999999999999999999999999988865
No 53
>PF14658 EF-hand_9: EF-hand domain
Probab=98.82 E-value=2.7e-08 Score=58.83 Aligned_cols=62 Identities=23% Similarity=0.455 Sum_probs=57.7
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhcCCCCC-CcccHHHHHHHHHHh
Q psy7436 172 EAFRVFDKDGNGFISAAELRHVMTNLGE-KLTDEEVDEMIREADIDGD-GQVNYEVYTIYCVHI 233 (243)
Q Consensus 172 ~~f~~~D~~~~G~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~eF~~~~~~~ 233 (243)
.+|..+|.++.|.|...++..+|+.++. ..++.+++.+...+|+++. |.|+++.|+..+..+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 4799999999999999999999999987 8889999999999999998 999999999888754
No 54
>KOG0038|consensus
Probab=98.78 E-value=3.7e-08 Score=66.95 Aligned_cols=100 Identities=35% Similarity=0.664 Sum_probs=80.3
Q ss_pred hhhhhhhhccCCCccchHHHHHHHHhhcCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHH----
Q psy7436 53 LQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLG-EKLTDEEVDE---- 127 (243)
Q Consensus 53 ~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~---- 127 (243)
++....|+.+|+|.+++++|+..++-.....+..-+...+|+.||-++++.|...++...+..+. ..+++.+++.
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 45567888889999999999998886665556667788899999999999999999999998873 4577777654
Q ss_pred HHHHhCcCCCCccccCCCCCCChHHHHHHHHhh
Q psy7436 128 MIREADIDGDGQVNYEGNGTIDFPEFLTMMARK 160 (243)
Q Consensus 128 l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~ 160 (243)
++...+.++||+ +++++|...+...
T Consensus 154 vieEAD~DgDgk--------l~~~eFe~~i~ra 178 (189)
T KOG0038|consen 154 VIEEADLDGDGK--------LSFAEFEHVILRA 178 (189)
T ss_pred HHHHhcCCCCCc--------ccHHHHHHHHHhC
Confidence 556667776665 8889999888654
No 55
>KOG4251|consensus
Probab=98.78 E-value=2.2e-08 Score=74.13 Aligned_cols=170 Identities=22% Similarity=0.266 Sum_probs=112.8
Q ss_pred cCCCccchHHHHHHHHhhcCCc--ccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCC-------------CCHHHH
Q psy7436 62 HGNGTIDFPEFLTMMARKMKDT--DSEEEIREAFRVFDKDGNGFISAAELRHVMTNL-GEK-------------LTDEEV 125 (243)
Q Consensus 62 ~~~g~i~~~ef~~~~~~~~~~~--~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~-------------~~~~~~ 125 (243)
+.+++|+-.|..+++....... .....-+..|+..|++++|.|+.+|+..-+.+. |.. +.-++-
T Consensus 113 NtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevadairlneelkVDeE 192 (362)
T KOG4251|consen 113 NTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEE 192 (362)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHHhhccCcccccHH
Confidence 3999999999999887543211 111234556899999999999999997655443 211 111122
Q ss_pred HHHHHHhCcCCCCccccC-CCCCCChHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-----hCC
Q psy7436 126 DEMIREADIDGDGQVNYE-GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTN-----LGE 199 (243)
Q Consensus 126 ~~l~~~~~~~~~~~i~~~-~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~-----~~~ 199 (243)
...+..-..+.++..+.. .+-.++-++|..++........-...+..+...+|++++..++..||....-. .|.
T Consensus 193 tqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgq 272 (362)
T KOG4251|consen 193 TQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQ 272 (362)
T ss_pred HHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhcc
Confidence 233333334444443332 23345668898888776655555567888999999999999999999765321 122
Q ss_pred CCC----HHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q psy7436 200 KLT----DEEVDEMIREADIDGDGQVNYEVYTIYCV 231 (243)
Q Consensus 200 ~~~----~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 231 (243)
.+. .+...++=+.+|.|.||.+|++|+..|+.
T Consensus 273 diddnwvkdRkkEFeElIDsNhDGivTaeELe~y~d 308 (362)
T KOG4251|consen 273 DIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVD 308 (362)
T ss_pred chHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcC
Confidence 222 33455677788999999999999998865
No 56
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.70 E-value=6.5e-08 Score=58.89 Aligned_cols=60 Identities=27% Similarity=0.365 Sum_probs=52.7
Q ss_pred hhhhhhhc--CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhh
Q psy7436 2 IEEYGSLL--DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARK 79 (243)
Q Consensus 2 ~~~~f~~f--d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~ 79 (243)
++.+|..+ |++|.|+.+|+..++..+|. +..++..++..++.+ ++|.|+++||...+...
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~----------------~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTD----------------KDGKLDKEEFAIAMHLI 62 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCC----------------CCCcCCHHHHHHHHHHH
Confidence 46788888 78999999999999999875 888999999999988 99999999999887643
No 57
>KOG0377|consensus
Probab=98.70 E-value=3.1e-07 Score=73.68 Aligned_cols=132 Identities=22% Similarity=0.364 Sum_probs=96.6
Q ss_pred hhhhhhc--CCCCCcCHHHHHHHHHHc-CCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhh
Q psy7436 3 EEYGSLL--DGDGTITTKELGTVMRSL-GQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARK 79 (243)
Q Consensus 3 ~~~f~~f--d~~g~i~~~ef~~~l~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~ 79 (243)
...|+.. +++|+|+...+..++..+ |++++-.-+.--+...+ .+|.+.|.+-...+...
T Consensus 467 ~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s------------------~d~~v~Y~~~~~~l~~e 528 (631)
T KOG0377|consen 467 EDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGS------------------DDGKVEYKSTLDNLDTE 528 (631)
T ss_pred HHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCC------------------cCcceehHhHHHHhhhh
Confidence 3456666 689999999999999884 77888554433222222 56788887765554321
Q ss_pred cCC-----------cccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHHhCcCCCCccccCC
Q psy7436 80 MKD-----------TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL----GEKLTDEEVDEMIREADIDGDGQVNYEG 144 (243)
Q Consensus 80 ~~~-----------~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~i~~~~ 144 (243)
... ......+..+|+..|.|++|.|+.+||..+..-+ ...++.+++..+.+.+|.|+||.
T Consensus 529 ~~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~----- 603 (631)
T KOG0377|consen 529 VILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGK----- 603 (631)
T ss_pred hHHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCc-----
Confidence 110 1123447889999999999999999999887654 46789999999999999998887
Q ss_pred CCCCChHHHHHHHHhh
Q psy7436 145 NGTIDFPEFLTMMARK 160 (243)
Q Consensus 145 ~~~i~~~ef~~~~~~~ 160 (243)
|++.||++.+.-.
T Consensus 604 ---IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 604 ---IDLNEFLEAFRLV 616 (631)
T ss_pred ---ccHHHHHHHHhhh
Confidence 6777999887654
No 58
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.68 E-value=2.1e-07 Score=59.70 Aligned_cols=66 Identities=23% Similarity=0.544 Sum_probs=56.6
Q ss_pred HHHHHHHHhhcC-CC-CCcccHHHHHHHHHH---hCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhh
Q psy7436 87 EEIREAFRVFDK-DG-NGFISAAELRHVMTN---LGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARK 160 (243)
Q Consensus 87 ~~l~~~f~~~D~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~ 160 (243)
..+..+|..|+. ++ +|.|+.+||..++.. +|..++++++..+++..+.+++|. |+|.+|+..+...
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~--------Idf~EFv~lm~~l 80 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQE--------VNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCC--------CcHHHHHHHHHHH
Confidence 347789999997 66 899999999999973 688899999999999999998777 6777999887654
No 59
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.68 E-value=2.3e-07 Score=60.33 Aligned_cols=67 Identities=30% Similarity=0.606 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-hC----CCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHH
Q psy7436 86 EEEIREAFRVFD-KDGNG-FISAAELRHVMTN-LG----EKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMA 158 (243)
Q Consensus 86 ~~~l~~~f~~~D-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~ 158 (243)
...++.+|..+| .+++| .|+..||..+++. +| ..+++.++..++..++.+++|. |+|.+|+.++.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~--------I~f~eF~~l~~ 79 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGE--------VDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCc--------CcHHHHHHHHH
Confidence 345899999997 99999 5999999999985 44 3468899999999999997777 78889998887
Q ss_pred hh
Q psy7436 159 RK 160 (243)
Q Consensus 159 ~~ 160 (243)
..
T Consensus 80 ~~ 81 (92)
T cd05025 80 AL 81 (92)
T ss_pred HH
Confidence 65
No 60
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.66 E-value=2.2e-07 Score=60.64 Aligned_cols=67 Identities=27% Similarity=0.531 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhcC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHH
Q psy7436 86 EEEIREAFRVFDK-DG-NGFISAAELRHVMTN-----LGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMA 158 (243)
Q Consensus 86 ~~~l~~~f~~~D~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~ 158 (243)
...+..+|..+|. ++ +|.|+..|+..++.. ++..++..++..++..++.+++|. |+|++|+..+.
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~--------I~f~eF~~l~~ 78 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGK--------VNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCc--------CcHHHHHHHHH
Confidence 3458889999997 87 699999999999986 466789999999999999997777 78889998886
Q ss_pred hh
Q psy7436 159 RK 160 (243)
Q Consensus 159 ~~ 160 (243)
..
T Consensus 79 ~~ 80 (94)
T cd05031 79 GL 80 (94)
T ss_pred HH
Confidence 64
No 61
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.65 E-value=3.2e-07 Score=59.63 Aligned_cols=66 Identities=23% Similarity=0.474 Sum_probs=55.2
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHh
Q psy7436 87 EEIREAFRVFD-KDGNG-FISAAELRHVMTNL-----GEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159 (243)
Q Consensus 87 ~~l~~~f~~~D-~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~ 159 (243)
..+..+|..|| .+++| .|+..||..++... ....++.++..+++.+|.+++|. |+|+||+..+..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~--------Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNE--------VDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCC--------CCHHHHHHHHHH
Confidence 34778899999 78998 59999999999762 34457889999999999998777 788899998876
Q ss_pred h
Q psy7436 160 K 160 (243)
Q Consensus 160 ~ 160 (243)
+
T Consensus 82 l 82 (93)
T cd05026 82 L 82 (93)
T ss_pred H
Confidence 5
No 62
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.63 E-value=2.9e-07 Score=60.35 Aligned_cols=66 Identities=27% Similarity=0.474 Sum_probs=57.7
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhh
Q psy7436 85 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARK 160 (243)
Q Consensus 85 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~ 160 (243)
....+..+|..+|.+++|.|+..++..+++..+ ++.+++..++..++.+.+|. |++++|+.++...
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~--------I~~~eF~~~~~~~ 73 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGE--------LDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCC--------cCHHHHHHHHHHH
Confidence 456789999999999999999999999999876 78899999999999887776 7888999887654
No 63
>KOG0751|consensus
Probab=98.57 E-value=2.5e-06 Score=69.56 Aligned_cols=193 Identities=17% Similarity=0.229 Sum_probs=130.3
Q ss_pred hhhhhhhc--CCCCCcCHHHHHHHHHHcCCC------CCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHH
Q psy7436 2 IEEYGSLL--DGDGTITTKELGTVMRSLGQN------PTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFL 73 (243)
Q Consensus 2 ~~~~f~~f--d~~g~i~~~ef~~~l~~l~~~------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~ 73 (243)
+..+|..| .++|.+|.+++..+..+..+. .+.+-|...+. .. ..-.++|.+|.
T Consensus 110 ~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg---~~----------------~~r~~ny~~f~ 170 (694)
T KOG0751|consen 110 FEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFG---DI----------------RKRHLNYAEFT 170 (694)
T ss_pred HHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhh---hH----------------HHHhccHHHHH
Confidence 45677777 467778888888887775331 12222222222 22 45678999999
Q ss_pred HHHHhhcCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHH
Q psy7436 74 TMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEF 153 (243)
Q Consensus 74 ~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef 153 (243)
+++.... .+.-++.|+..|..++|.|+.-+|+..+-.+..++..+.++..+-.....+++. ......|..|
T Consensus 171 Q~lh~~~-----~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H----~vSf~yf~af 241 (694)
T KOG0751|consen 171 QFLHEFQ-----LEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSH----QVSFSYFNAF 241 (694)
T ss_pred HHHHHHH-----HHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCcc----ccchHHHHHH
Confidence 9887663 333688999999999999999999999887766666677766665544333332 1111234444
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHhh-cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-CCCcccHHHHHHHH
Q psy7436 154 LTMMARKMKDTDSEEEIREAFRVF-DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID-GDGQVNYEVYTIYC 230 (243)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~f~~~-D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~eF~~~~ 230 (243)
-..+... +.++.++..+ +..++-.++.+++..+-..++. .+.-+++.+|+..+.. ..|.+++.++.+..
T Consensus 242 nslL~~m-------elirk~y~s~~~~~~d~~~~kdq~~~~a~~~~q-~t~~~idilf~la~~~~~~~~ltl~Di~~I~ 312 (694)
T KOG0751|consen 242 NSLLNNM-------ELIRKIYSSLAGTRKDVEVTKDQFSLAAQTSKQ-VTPLEIDILFQLADLYHPMGRLTLADIERIA 312 (694)
T ss_pred HHHHhhH-------HHHHHHHHHhcccccchhhhHHHHHHHHHHhhc-cCchhhhhhhhhhhcccccccccHHHHHhhC
Confidence 4455444 7777888876 5566778999999888777753 5667888888888654 45689999987643
No 64
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.57 E-value=4.1e-07 Score=58.65 Aligned_cols=68 Identities=26% Similarity=0.550 Sum_probs=57.1
Q ss_pred cHHHHHHHHHhhcC--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHH
Q psy7436 85 SEEEIREAFRVFDK--DGNGFISAAELRHVMTN-LGEK----LTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMM 157 (243)
Q Consensus 85 ~~~~l~~~f~~~D~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~ 157 (243)
....++.+|..+|. +++|.|+..+|..+++. ++.. .+..++..++..++.+++|. |+|++|+.++
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~--------I~f~eF~~~~ 77 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGK--------VDFQEFLVLI 77 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCc--------CcHHHHHHHH
Confidence 34568899999999 89999999999999976 4533 35899999999999997776 7888999988
Q ss_pred Hhh
Q psy7436 158 ARK 160 (243)
Q Consensus 158 ~~~ 160 (243)
...
T Consensus 78 ~~~ 80 (88)
T cd00213 78 GKL 80 (88)
T ss_pred HHH
Confidence 765
No 65
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.56 E-value=3.1e-07 Score=54.61 Aligned_cols=59 Identities=51% Similarity=0.871 Sum_probs=52.9
Q ss_pred hhhhhhhc--CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHH
Q psy7436 2 IEEYGSLL--DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMM 76 (243)
Q Consensus 2 ~~~~f~~f--d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~ 76 (243)
+..+|..+ +++|.|+..+|..+++.++...+...+..++..++.+ ++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKD----------------GDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC----------------CCCeEeHHHHHHHh
Confidence 35667777 7899999999999999999999999999999999988 89999999998765
No 66
>KOG0040|consensus
Probab=98.56 E-value=1.5e-06 Score=79.04 Aligned_cols=130 Identities=22% Similarity=0.442 Sum_probs=98.6
Q ss_pred hhhhhc--CCCCCcCHHHHHHHHHHcCCCCC-------HHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHH
Q psy7436 4 EYGSLL--DGDGTITTKELGTVMRSLGQNPT-------EAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLT 74 (243)
Q Consensus 4 ~~f~~f--d~~g~i~~~ef~~~l~~l~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~ 74 (243)
-+|..| +++|+++.++|+.||+.+|.+++ ++++++++...|++ .+|+|+..+|.+
T Consensus 2257 ~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~----------------r~G~Vsl~dY~a 2320 (2399)
T KOG0040|consen 2257 MMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPN----------------RDGYVSLQDYMA 2320 (2399)
T ss_pred HHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCC----------------CcCcccHHHHHH
Confidence 467777 78999999999999999998873 56899999999998 999999999999
Q ss_pred HHHhhcC-CcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHH
Q psy7436 75 MMARKMK-DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEF 153 (243)
Q Consensus 75 ~~~~~~~-~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef 153 (243)
++..... .-.....+..+|+.+|. +..+|+..++... +++.+++-++..+.+..++.--..-...++|.+|
T Consensus 2321 fmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~df 2392 (2399)
T KOG0040|consen 2321 FMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDF 2392 (2399)
T ss_pred HHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHHH
Confidence 9865432 23445689999999998 7889999988765 5777777777776655443211112234677777
Q ss_pred HHHH
Q psy7436 154 LTMM 157 (243)
Q Consensus 154 ~~~~ 157 (243)
+..+
T Consensus 2393 v~sl 2396 (2399)
T KOG0040|consen 2393 VNSL 2396 (2399)
T ss_pred HHHH
Confidence 7654
No 67
>KOG0040|consensus
Probab=98.51 E-value=2.5e-06 Score=77.61 Aligned_cols=129 Identities=25% Similarity=0.458 Sum_probs=101.1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCC-------CHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHh
Q psy7436 87 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL-------TDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159 (243)
Q Consensus 87 ~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~-------~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~ 159 (243)
.++..+|..||.+++|.++..+|..||+.+|+.+ +++.++.++...|++.+|. |+..+|+.++-.
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~--------Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGY--------VSLQDYMAFMIS 2324 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCc--------ccHHHHHHHHHh
Confidence 5578899999999999999999999999998766 3458999999999998887 677799998766
Q ss_pred hcC-CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCC--------CCcccHHHHHHHH
Q psy7436 160 KMK-DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDG--------DGQVNYEVYTIYC 230 (243)
Q Consensus 160 ~~~-~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~--------~g~i~~~eF~~~~ 230 (243)
... .......+..+|+.+|. +..+|+..++.+. ++++++.-.+..+.+-. .+.++|.+|++.+
T Consensus 2325 ~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2325 KETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred cccccccchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 543 33445689999999999 8889999988765 46677666655553322 2358899998765
Q ss_pred H
Q psy7436 231 V 231 (243)
Q Consensus 231 ~ 231 (243)
.
T Consensus 2397 ~ 2397 (2399)
T KOG0040|consen 2397 F 2397 (2399)
T ss_pred h
Confidence 3
No 68
>KOG2562|consensus
Probab=98.50 E-value=3.2e-06 Score=68.46 Aligned_cols=198 Identities=18% Similarity=0.208 Sum_probs=123.0
Q ss_pred hhhhc--CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcCC
Q psy7436 5 YGSLL--DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKD 82 (243)
Q Consensus 5 ~f~~f--d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~ 82 (243)
.|..+ |..|.|+...|...-... ..++...+.+++...+.. +.+.+.-.+|...+......
T Consensus 144 ~f~k~~~d~~g~it~~~Fi~~~~~~-~~l~~t~~~~~v~~l~~~----------------~~~yl~q~df~~~Lqeli~T 206 (493)
T KOG2562|consen 144 TFRKIDGDDTGHITRDKFINYWMRG-LMLTHTRLEQFVNLLIQA----------------GCSYLRQDDFKPYLQELIAT 206 (493)
T ss_pred hhhhhccCcCCceeHHHHHHHHHhh-hhHHHHHHHHHHHHHhcc----------------CccceeccccHHHHHHHHhc
Confidence 34444 889999999998875543 346777777788888877 88888888887776644221
Q ss_pred cc--------------cHHHHHHHHHhhcCCCCCcccHHHHHHHH--HHhC------------CCCCHHHHHH---HHHH
Q psy7436 83 TD--------------SEEEIREAFRVFDKDGNGFISAAELRHVM--TNLG------------EKLTDEEVDE---MIRE 131 (243)
Q Consensus 83 ~~--------------~~~~l~~~f~~~D~~~~g~i~~~e~~~~l--~~~~------------~~~~~~~~~~---l~~~ 131 (243)
.. ....++.+|...++.++|.|+..++.... ..+. ...+.+.... .|-.
T Consensus 207 hpl~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFwe 286 (493)
T KOG2562|consen 207 HPLEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWE 286 (493)
T ss_pred CCchhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhh
Confidence 11 12347888999999999999998886542 2211 1111111222 2444
Q ss_pred hCcCCCCccccCCCCCCChHHHHHHHHhhcCCCCcHHHHHHHHH----hhcCCCCCcccHHHHHHHHHHhCCCCCHHHHH
Q psy7436 132 ADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFR----VFDKDGNGFISAAELRHVMTNLGEKLTDEEVD 207 (243)
Q Consensus 132 ~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~----~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~ 207 (243)
.|.+.+|.++.+ +....-... .....+.++|. ..-...+|.|+..+|..++-++-..-++.-++
T Consensus 287 LD~Dhd~lidk~--------~L~ry~d~t----lt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~Sle 354 (493)
T KOG2562|consen 287 LDTDHDGLIDKE--------DLKRYGDHT----LTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLE 354 (493)
T ss_pred hccccccccCHH--------HHHHHhccc----hhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchh
Confidence 555555553332 332222111 12355667777 23344567788888877777776556666777
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHH
Q psy7436 208 EMIREADIDGDGQVNYEVYTIYCV 231 (243)
Q Consensus 208 ~~~~~~d~~~~g~i~~~eF~~~~~ 231 (243)
..|+.+|.+++|.++..|.--++.
T Consensus 355 YwFrclDld~~G~Lt~~el~~fye 378 (493)
T KOG2562|consen 355 YWFRCLDLDGDGILTLNELRYFYE 378 (493)
T ss_pred hheeeeeccCCCcccHHHHHHHHH
Confidence 778888888888877777554443
No 69
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.47 E-value=1.9e-06 Score=55.36 Aligned_cols=67 Identities=28% Similarity=0.499 Sum_probs=55.4
Q ss_pred HHHHHHHHHh-hcCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHH
Q psy7436 86 EEEIREAFRV-FDKDGNG-FISAAELRHVMTNL-----GEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMA 158 (243)
Q Consensus 86 ~~~l~~~f~~-~D~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~ 158 (243)
...+..+|.. +|.+++| .|+.+||..++... +...++.++..+++.++.+++|. |+|+||+.++.
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~--------I~f~EF~~l~~ 79 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQ--------LDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCc--------CcHHHHHHHHH
Confidence 3457889988 6677865 99999999999875 34567899999999999998887 78889999886
Q ss_pred hh
Q psy7436 159 RK 160 (243)
Q Consensus 159 ~~ 160 (243)
..
T Consensus 80 ~l 81 (89)
T cd05023 80 GL 81 (89)
T ss_pred HH
Confidence 65
No 70
>KOG0041|consensus
Probab=98.45 E-value=1.4e-06 Score=62.76 Aligned_cols=67 Identities=28% Similarity=0.549 Sum_probs=60.7
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q psy7436 168 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIM 234 (243)
Q Consensus 168 ~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 234 (243)
+.+..+|+.+|.+.+|+|+..|+..+|..+|.+-+---+..++...|.|.||+|+|.||+-.+....
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaa 165 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAA 165 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHh
Confidence 6678899999999999999999999999999877777788999999999999999999997776543
No 71
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.45 E-value=2.3e-06 Score=54.46 Aligned_cols=66 Identities=17% Similarity=0.379 Sum_probs=54.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHh-----CCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q psy7436 168 EEIREAFRVFDKDGNGFISAAELRHVMTNL-----GEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIM 234 (243)
Q Consensus 168 ~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 234 (243)
..+..+|+.|. .+.++++..||+.++..- ...-.+..++.+++..|.|+||.|+|.||+..+..+.
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 45677899997 456799999999999764 2234678899999999999999999999999887553
No 72
>PF14658 EF-hand_9: EF-hand domain
Probab=98.43 E-value=9e-07 Score=52.43 Aligned_cols=59 Identities=34% Similarity=0.628 Sum_probs=54.2
Q ss_pred hhhhhc--CCCCCcCHHHHHHHHHHcCC-CCCHHHHHHHHHhccccccchhhhhhhhhhhccCC-CccchHHHHHHHHh
Q psy7436 4 EYGSLL--DGDGTITTKELGTVMRSLGQ-NPTEAELQDMINEVDADENVESNLQYAELFVYHGN-GTIDFPEFLTMMAR 78 (243)
Q Consensus 4 ~~f~~f--d~~g~i~~~ef~~~l~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~i~~~ef~~~~~~ 78 (243)
.+|.+| ++.|.|....+..+|+..+. .+++.+++.+...+|++ +. |.|+++.|+.+++.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~----------------g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPE----------------GRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCC----------------CCCceEeHHHHHHHHHH
Confidence 578899 79999999999999999998 89999999999999998 66 99999999998863
No 73
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.39 E-value=6.8e-07 Score=44.30 Aligned_cols=27 Identities=48% Similarity=0.872 Sum_probs=18.6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy7436 170 IREAFRVFDKDGNGFISAAELRHVMTN 196 (243)
Q Consensus 170 ~~~~f~~~D~~~~G~i~~~e~~~~l~~ 196 (243)
+..+|+.+|+|++|+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 456677777777777777777776654
No 74
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.33 E-value=4.3e-06 Score=56.32 Aligned_cols=62 Identities=19% Similarity=0.331 Sum_probs=52.9
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHH
Q psy7436 85 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMA 158 (243)
Q Consensus 85 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~ 158 (243)
....+...|..+|.|++|.|+.+|+..+. .......+..++..+|.|++|. |+++||..++.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~--------IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGS--------ISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCC--------CCHHHHHHHHh
Confidence 34568899999999999999999999876 2356788899999999998887 78889999983
No 75
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.29 E-value=1.2e-06 Score=43.42 Aligned_cols=28 Identities=36% Similarity=0.654 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHH
Q psy7436 205 EVDEMIREADIDGDGQVNYEVYTIYCVH 232 (243)
Q Consensus 205 ~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 232 (243)
++..+|+.+|.|+||+|+++||+..+..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5788999999999999999999998875
No 76
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.27 E-value=4.8e-06 Score=46.47 Aligned_cols=50 Identities=16% Similarity=0.339 Sum_probs=41.4
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q psy7436 184 FISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHI 233 (243)
Q Consensus 184 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 233 (243)
.++..|++.+|+.+++.+++..+..+|+.+|.+++|.+.-+||..++..+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 37889999999999999999999999999999999999999999988653
No 77
>KOG0041|consensus
Probab=98.26 E-value=1.9e-05 Score=57.06 Aligned_cols=102 Identities=26% Similarity=0.474 Sum_probs=79.1
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcC-C
Q psy7436 85 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMK-D 163 (243)
Q Consensus 85 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~-~ 163 (243)
.......+|..||.+.+|+|+..|++.++.++|.+-+.--+..++...+.|.+|. ++|.+|+-++..... .
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgk--------lSfreflLIfrkaaagE 168 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGK--------LSFREFLLIFRKAAAGE 168 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccc--------hhHHHHHHHHHHHhccc
Confidence 4556889999999999999999999999999998888888899999999997777 788899988876433 2
Q ss_pred CCcHHHHHHHHHh--hcCCCCCcccHHHHHHHH
Q psy7436 164 TDSEEEIREAFRV--FDKDGNGFISAAELRHVM 194 (243)
Q Consensus 164 ~~~~~~~~~~f~~--~D~~~~G~i~~~e~~~~l 194 (243)
......+..+-+. +|...-|+.....|-.+=
T Consensus 169 L~~ds~~~~LAr~~eVDVskeGV~GAknFFeAK 201 (244)
T KOG0041|consen 169 LQEDSGLLRLARLSEVDVSKEGVSGAKNFFEAK 201 (244)
T ss_pred cccchHHHHHHHhcccchhhhhhhhHHHHHHHH
Confidence 2222334444444 788888877777765543
No 78
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.25 E-value=8.9e-06 Score=53.66 Aligned_cols=65 Identities=26% Similarity=0.479 Sum_probs=57.0
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q psy7436 166 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHI 233 (243)
Q Consensus 166 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 233 (243)
....+..+|...|. .+|.|+.++.+.++...+ ++.+.+..++...|.+++|+++++||+-.+...
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 34667889999985 689999999999999987 889999999999999999999999999877654
No 79
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.22 E-value=2.5e-06 Score=43.17 Aligned_cols=29 Identities=59% Similarity=1.122 Sum_probs=24.4
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHH-HhC
Q psy7436 170 IREAFRVFDKDGNGFISAAELRHVMT-NLG 198 (243)
Q Consensus 170 ~~~~f~~~D~~~~G~i~~~e~~~~l~-~~~ 198 (243)
+..+|+.+|.+++|.|+.+||+.+|+ .+|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 56889999999999999999999998 564
No 80
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.18 E-value=1.3e-05 Score=51.49 Aligned_cols=66 Identities=23% Similarity=0.476 Sum_probs=54.1
Q ss_pred HHHHHHHHhhcCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHh
Q psy7436 87 EEIREAFRVFDKD--GNGFISAAELRHVMT-NLGEKLT----DEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159 (243)
Q Consensus 87 ~~l~~~f~~~D~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~ 159 (243)
..+...|..|+.. .+|.|+.+||..++. .++..++ +.++..++..++.+++|. |+|++|+..+..
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~--------I~f~eF~~~~~~ 79 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQ--------LSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCc--------CcHHHHHHHHHH
Confidence 3467789999865 478999999999997 5555566 899999999999998777 778899988765
Q ss_pred h
Q psy7436 160 K 160 (243)
Q Consensus 160 ~ 160 (243)
.
T Consensus 80 ~ 80 (88)
T cd05030 80 V 80 (88)
T ss_pred H
Confidence 4
No 81
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.08 E-value=7.2e-06 Score=41.46 Aligned_cols=30 Identities=57% Similarity=1.089 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHH-HhC
Q psy7436 88 EIREAFRVFDKDGNGFISAAELRHVMT-NLG 117 (243)
Q Consensus 88 ~l~~~f~~~D~~~~g~i~~~e~~~~l~-~~~ 117 (243)
+++.+|+.+|.+++|.|+.+||..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 368899999999999999999999998 564
No 82
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.99 E-value=4.3e-05 Score=62.54 Aligned_cols=55 Identities=27% Similarity=0.459 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhh
Q psy7436 167 EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIM 234 (243)
Q Consensus 167 ~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~ 234 (243)
...+..+|+.+|.+++|.|+.+||.. +..+|+.+|.|+||.|+++||...+....
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 35578899999999999999999942 47799999999999999999999887653
No 83
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.95 E-value=1.5e-05 Score=37.97 Aligned_cols=23 Identities=43% Similarity=0.823 Sum_probs=16.5
Q ss_pred HHHHHhhcCCCCCcccHHHHHHH
Q psy7436 171 REAFRVFDKDGNGFISAAELRHV 193 (243)
Q Consensus 171 ~~~f~~~D~~~~G~i~~~e~~~~ 193 (243)
..+|+.+|.|++|.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45677777777777777777764
No 84
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.89 E-value=0.00021 Score=45.56 Aligned_cols=64 Identities=20% Similarity=0.466 Sum_probs=52.8
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhh
Q psy7436 88 EIREAFRVFDKDGNGFISAAELRHVMTN-----LGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARK 160 (243)
Q Consensus 88 ~l~~~f~~~D~~~~g~i~~~e~~~~l~~-----~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~ 160 (243)
.+..+|..|. ...+.++..||+.++.. +...-.+..++.+++..|.|+||. |+|.||+..+...
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~--------vdF~EF~~Lv~~l 77 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGK--------VGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCc--------CcHHHHHHHHHHH
Confidence 4677898887 44679999999999864 344567899999999999998887 7888999998776
No 85
>KOG4666|consensus
Probab=97.83 E-value=4.9e-05 Score=59.02 Aligned_cols=122 Identities=12% Similarity=0.110 Sum_probs=95.6
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCCCCcHHHHHHHHHhhc
Q psy7436 99 DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFD 178 (243)
Q Consensus 99 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D 178 (243)
.+.+.|-..+|...++ .+.+ +.+..+|..++.+.+|. ++|.+.+..+..++..+.....+..+|+.|+
T Consensus 239 ~kg~~igi~efa~~l~---vpvs-d~l~~~f~LFde~~tg~--------~D~re~v~~lavlc~p~~t~~iiq~afk~f~ 306 (412)
T KOG4666|consen 239 AKGPDIGIVEFAVNLR---VPVS-DKLAPTFMLFDEGTTGN--------GDYRETVKTLAVLCGPPVTPVIIQYAFKRFS 306 (412)
T ss_pred ccCCCcceeEeeeeee---cchh-hhhhhhhheecCCCCCc--------ccHHHHhhhheeeeCCCCcHHHHHHHHHhcc
Confidence 4455565555543332 2223 67788999999986665 7888999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q psy7436 179 KDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHI 233 (243)
Q Consensus 179 ~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 233 (243)
.+.+|.+...+|-.+|.... .+..-.+--+|...+...+|+|++.+|.++....
T Consensus 307 v~eDg~~ge~~ls~ilq~~l-gv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 307 VAEDGISGEHILSLILQVVL-GVEVLRVPVLFPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred cccccccchHHHHHHHHHhc-CcceeeccccchhhhcccCcceeHHHHHHHHHhC
Confidence 99999999999888887652 2445556678999998899999999999987743
No 86
>KOG0169|consensus
Probab=97.78 E-value=0.00074 Score=58.50 Aligned_cols=141 Identities=21% Similarity=0.339 Sum_probs=112.9
Q ss_pred ccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCC
Q psy7436 84 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKD 163 (243)
Q Consensus 84 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~ 163 (243)
.....+..+|...|.+++|.++..+...++..+...+....+..++++.+...++. +...++..+.......
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k--------~~~~~~~~~~~~~~~r 204 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGK--------LEEEEFVKFRKELTKR 204 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccce--------ehHHHHHHHHHhhccC
Confidence 34566888999999999999999999999999998899999999999996554444 6777888888776544
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhcCCCC----CCcccHHHHHHHHHHhhccc
Q psy7436 164 TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADIDG----DGQVNYEVYTIYCVHIMGNT 237 (243)
Q Consensus 164 ~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~~----~g~i~~~eF~~~~~~~~~~~ 237 (243)
+ .+..+|..+-.+ .+.++..++..+|.... ...+...+..+++.+.... .+.++++.|.+||.....+.
T Consensus 205 p----ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~~~~ 279 (746)
T KOG0169|consen 205 P----EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPDCNP 279 (746)
T ss_pred c----hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCccCCC
Confidence 3 566778877544 89999999999998874 4577888888888885543 35699999999998766554
No 87
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.73 E-value=1.3e-05 Score=53.82 Aligned_cols=62 Identities=16% Similarity=0.367 Sum_probs=46.3
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q psy7436 166 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIY 229 (243)
Q Consensus 166 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 229 (243)
....+.--|..+|.+++|.|+..|+..+...+ ...+.-+..++...|.|+||.|++.||..|
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 34667778999999999999999998876655 234567899999999999999999999865
No 88
>KOG1029|consensus
Probab=97.72 E-value=0.00096 Score=57.81 Aligned_cols=61 Identities=23% Similarity=0.523 Sum_probs=55.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q psy7436 169 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCV 231 (243)
Q Consensus 169 ~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 231 (243)
.+..+|..+|+..+|+++...-+.+|-..+ ++...+..++-..|.|+||+++-+||+-.+.
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 478899999999999999999999998877 7899999999999999999999999986554
No 89
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.68 E-value=0.00017 Score=40.36 Aligned_cols=49 Identities=16% Similarity=0.333 Sum_probs=40.2
Q ss_pred CcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHh
Q psy7436 14 TITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMAR 78 (243)
Q Consensus 14 ~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~ 78 (243)
+++.+|++.+|+.+++.+.+.-+..+++.+|+. ++|.+.-+||..++..
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s----------------~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKS----------------QSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SS----------------SSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhccc----------------CCCCccHHHHHHHHHH
Confidence 478999999999999999999999999999998 9999999999887653
No 90
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.66 E-value=7.9e-05 Score=35.46 Aligned_cols=25 Identities=40% Similarity=0.816 Sum_probs=20.1
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHH
Q psy7436 89 IREAFRVFDKDGNGFISAAELRHVM 113 (243)
Q Consensus 89 l~~~f~~~D~~~~g~i~~~e~~~~l 113 (243)
++..|..+|.|++|.|+..||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4567888899999999998888753
No 91
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.55 E-value=0.00057 Score=45.11 Aligned_cols=65 Identities=29% Similarity=0.523 Sum_probs=53.9
Q ss_pred ccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHh
Q psy7436 84 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159 (243)
Q Consensus 84 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~ 159 (243)
.....+..+|...+. ++|.|+..+...++...+ ++.+.+..++...|.+++|. ++++||+..+.-
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~--------L~~~EF~iAm~L 71 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGK--------LDFEEFAIAMHL 71 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSE--------EEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCc--------CCHHHHHHHHHH
Confidence 456678889999885 589999999999998876 88899999999999998888 567799887653
No 92
>KOG0046|consensus
Probab=97.32 E-value=0.00094 Score=55.42 Aligned_cols=68 Identities=25% Similarity=0.534 Sum_probs=59.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC---CCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhcc
Q psy7436 168 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEK---LTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIMGN 236 (243)
Q Consensus 168 ~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~ 236 (243)
..+.+.|...| +++|+++..++..++...+.. ...+++.+++...++|.+|+|+|++|+..+..+...
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~ 89 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSK 89 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhh
Confidence 45678899999 999999999999999988754 358899999999999999999999999977766554
No 93
>KOG0169|consensus
Probab=97.30 E-value=0.0042 Score=54.03 Aligned_cols=135 Identities=16% Similarity=0.267 Sum_probs=108.2
Q ss_pred hhhhhhhc--CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhh
Q psy7436 2 IEEYGSLL--DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARK 79 (243)
Q Consensus 2 ~~~~f~~f--d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~ 79 (243)
+...|... +++|.++..+...+++.+++.+....+..+++..+.- .++++...+|..+....
T Consensus 138 i~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~----------------~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 138 IHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNS----------------QTGKLEEEEFVKFRKEL 201 (746)
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhh----------------ccceehHHHHHHHHHhh
Confidence 34556665 7899999999999999999999999998988888666 89999999999987665
Q ss_pred cCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHH
Q psy7436 80 MKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMM 157 (243)
Q Consensus 80 ~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~ 157 (243)
...+ ++..+|..+-.+ .+.++..++..++...+ ...+.+.++.+++.+.....+. ..+.++++.|..++
T Consensus 202 ~~rp----ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~----~~~~l~ldgF~~yL 272 (746)
T KOG0169|consen 202 TKRP----EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFR----RHGLLSLDGFTRYL 272 (746)
T ss_pred ccCc----hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhcc----ccceecHHHHHHHh
Confidence 4433 577888877544 89999999999998764 4578889999998887665543 45568999999988
Q ss_pred Hhhc
Q psy7436 158 ARKM 161 (243)
Q Consensus 158 ~~~~ 161 (243)
.+..
T Consensus 273 ~S~~ 276 (746)
T KOG0169|consen 273 FSPD 276 (746)
T ss_pred cCcc
Confidence 7653
No 94
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.30 E-value=0.0013 Score=54.00 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=43.1
Q ss_pred chhhhhhhhhhhccCCCccchHHHHHHHHhhcCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q psy7436 49 VESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL 116 (243)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~ 116 (243)
...++.++..+|.+++|.|+.+||.. ...+|..+|.|++|.|+.+||..++...
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 44467777888888999999999842 3568999999999999999999887653
No 95
>KOG4065|consensus
Probab=97.30 E-value=0.0015 Score=42.94 Aligned_cols=61 Identities=28% Similarity=0.512 Sum_probs=46.7
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHh------C---CCC-CHHHH----HHHHHhcCCCCCCcccHHHHHHH
Q psy7436 169 EIREAFRVFDKDGNGFISAAELRHVMTNL------G---EKL-TDEEV----DEMIREADIDGDGQVNYEVYTIY 229 (243)
Q Consensus 169 ~~~~~f~~~D~~~~G~i~~~e~~~~l~~~------~---~~~-~~~~~----~~~~~~~d~~~~g~i~~~eF~~~ 229 (243)
.-..-|.++|-+++|.|+.-|+..++... | .++ ++.++ +.+++.-|.|+||.|+|.||++.
T Consensus 68 lqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 68 LQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 33457889999999999999999998754 2 223 44454 44566678999999999999874
No 96
>KOG1707|consensus
Probab=97.28 E-value=0.0025 Score=53.97 Aligned_cols=136 Identities=18% Similarity=0.297 Sum_probs=91.1
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCcC-CCCccccCCCCCCChHHHHHHHHhhcCC
Q psy7436 86 EEEIREAFRVFDKDGNGFISAAELRHVMTNL-GEKLTDEEVDEMIREADID-GDGQVNYEGNGTIDFPEFLTMMARKMKD 163 (243)
Q Consensus 86 ~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~~~~-~~~~i~~~~~~~i~~~ef~~~~~~~~~~ 163 (243)
...+..+|...|.|.+|.++..|+..+-..+ +.++.+.+++.+....+.. .+|..+. .++...|+.........
T Consensus 194 v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~----~ltl~GFLfL~~lfier 269 (625)
T KOG1707|consen 194 VKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYER----GLTLPGFLFLNTLFIER 269 (625)
T ss_pred HHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhc----cccccchHHHHHHHHHh
Confidence 3558899999999999999999999887664 6788888887777666544 3444222 25555555432221100
Q ss_pred C-----------------------------------------CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCC-
Q psy7436 164 T-----------------------------------------DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL- 201 (243)
Q Consensus 164 ~-----------------------------------------~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~- 201 (243)
. .-.+.+..+|..+|.+++|.++..|+..+.+......
T Consensus 270 gr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW 349 (625)
T KOG1707|consen 270 GRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPW 349 (625)
T ss_pred ccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCC
Confidence 0 0013478899999999999999999999998874221
Q ss_pred ---CHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q psy7436 202 ---TDEEVDEMIREADIDGDGQVNYEVYTIYCV 231 (243)
Q Consensus 202 ---~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 231 (243)
...+. .-.+..|.++|..|+..+.
T Consensus 350 ~~~~~~~~------t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 350 TSSPYKDS------TVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred CCCccccc------ceecccceeehhhHHHHHH
Confidence 11111 1123578899988887554
No 97
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.15 E-value=0.0013 Score=41.65 Aligned_cols=66 Identities=30% Similarity=0.538 Sum_probs=54.5
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHh-CC-CCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHHHhhcc
Q psy7436 170 IREAFRVFDKDGNGFISAAELRHVMTNL-GE-KLTDEEVDEMIREADID----GDGQVNYEVYTIYCVHIMGN 236 (243)
Q Consensus 170 ~~~~f~~~D~~~~G~i~~~e~~~~l~~~-~~-~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~~~~~~~~ 236 (243)
+..+|..+-. +.+.|+.++|++.|... +. .++..++..++..+.++ ..+.+++++|..||.....+
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~N~ 73 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDENS 73 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTTCB
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCcCC
Confidence 5678999955 88999999999999765 33 57899999999998665 46899999999999876544
No 98
>KOG4666|consensus
Probab=96.86 E-value=0.0035 Score=49.08 Aligned_cols=102 Identities=17% Similarity=0.142 Sum_probs=78.7
Q ss_pred hhhhhhhhhhhccCCCccchHHHHHHHHhhcCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy7436 50 ESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129 (243)
Q Consensus 50 ~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~ 129 (243)
.....++.+||.+++|.++|.|....+.-.-..+....-++-.|+.|+.+.+|.+...+|.-+++.. ..+..-.+..+|
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~-lgv~~l~v~~lf 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVV-LGVEVLRVPVLF 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHh-cCcceeeccccc
Confidence 4466788888888999999999888776555556667778889999999999999998887777653 235556677788
Q ss_pred HHhCcCCCCccccCCCCCCChHHHHHHHHhh
Q psy7436 130 READIDGDGQVNYEGNGTIDFPEFLTMMARK 160 (243)
Q Consensus 130 ~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~ 160 (243)
+.++...+++ |.+++|.++....
T Consensus 338 ~~i~q~d~~k--------i~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 338 PSIEQKDDPK--------IYASNFRKFAATE 360 (412)
T ss_pred hhhhcccCcc--------eeHHHHHHHHHhC
Confidence 8888776666 6777888776654
No 99
>KOG1029|consensus
Probab=96.71 E-value=0.025 Score=49.49 Aligned_cols=121 Identities=25% Similarity=0.419 Sum_probs=96.3
Q ss_pred CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhh----------
Q psy7436 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARK---------- 79 (243)
Q Consensus 10 d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~---------- 79 (243)
.+.|+||-.+-+.++-+.| |+..-+..+|...|.+ .+|+++..||.-++.-+
T Consensus 27 p~~gfitg~qArnfflqS~--LP~~VLaqIWALsDld----------------kDGrmdi~EfSIAmkLi~lkLqG~~lP 88 (1118)
T KOG1029|consen 27 PGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLD----------------KDGRMDIREFSIAMKLIKLKLQGIQLP 88 (1118)
T ss_pred CCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcC----------------ccccchHHHHHHHHHHHHHHhcCCcCC
Confidence 6889999999999988775 5777888899988888 89999999998776500
Q ss_pred --------------------------------------------------------------------------c-----
Q psy7436 80 --------------------------------------------------------------------------M----- 80 (243)
Q Consensus 80 --------------------------------------------------------------------------~----- 80 (243)
.
T Consensus 89 ~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~~~ 168 (1118)
T KOG1029|consen 89 PVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLPHD 168 (1118)
T ss_pred CCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 0
Q ss_pred --------------------CCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCcc
Q psy7436 81 --------------------KDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV 140 (243)
Q Consensus 81 --------------------~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i 140 (243)
-......+.++.|+.+|....|+++..+-+.+|...+ ++...+..++...|.|+||.
T Consensus 169 ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGk- 245 (1118)
T KOG1029|consen 169 SSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGK- 245 (1118)
T ss_pred cchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCc-
Confidence 0001113378999999999999999999999987766 78889999999999998887
Q ss_pred ccCCCCCCChHHHHHHHH
Q psy7436 141 NYEGNGTIDFPEFLTMMA 158 (243)
Q Consensus 141 ~~~~~~~i~~~ef~~~~~ 158 (243)
++.+||+-.+.
T Consensus 246 -------L~~dEfilam~ 256 (1118)
T KOG1029|consen 246 -------LSADEFILAMH 256 (1118)
T ss_pred -------ccHHHHHHHHH
Confidence 56669887654
No 100
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.59 E-value=0.0044 Score=29.68 Aligned_cols=26 Identities=46% Similarity=0.887 Sum_probs=16.6
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHH
Q psy7436 171 REAFRVFDKDGNGFISAAELRHVMTN 196 (243)
Q Consensus 171 ~~~f~~~D~~~~G~i~~~e~~~~l~~ 196 (243)
..+|+.+|.+++|.|+..+|..+++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 45666666666666666666666543
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.55 E-value=0.0032 Score=30.20 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=23.8
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHH
Q psy7436 206 VDEMIREADIDGDGQVNYEVYTIYCVH 232 (243)
Q Consensus 206 ~~~~~~~~d~~~~g~i~~~eF~~~~~~ 232 (243)
+..+|+.+|.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999988764
No 102
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.28 E-value=0.25 Score=35.49 Aligned_cols=141 Identities=15% Similarity=0.145 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhc----
Q psy7436 86 EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKM---- 161 (243)
Q Consensus 86 ~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~---- 161 (243)
...+++-..-+|.|++|.|.+-|-.+.++.+|..+.-..+..++-......--.-++-++- -|.-++.-+..-.
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P--~f~Iyi~nIhk~kHGSD 83 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDP--FFRIYIKNIHKGKHGSD 83 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCC--ceeEEeecccccccCCC
Confidence 3457788888999999999999999999999987766655544433322111000000000 0111111111110
Q ss_pred ------CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCC-------CHHHHHHHHHhcCCCCCCcccHHHHHH
Q psy7436 162 ------KDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL-------TDEEVDEMIREADIDGDGQVNYEVYTI 228 (243)
Q Consensus 162 ------~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~d~~~~g~i~~~eF~~ 228 (243)
+..-..+.++++|..++..+.+.+|..|+.++++.-.... +.-|-..+. .+-.+++|.+.-++-..
T Consensus 84 Sg~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y-~L~~d~dG~l~Ke~iR~ 162 (174)
T PF05042_consen 84 SGAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALY-ILAKDKDGFLSKEDIRG 162 (174)
T ss_pred ccccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHH-HHHcCcCCcEeHHHHhh
Confidence 1112236789999999999999999999999998743211 122222233 33356789998877544
Q ss_pred H
Q psy7436 229 Y 229 (243)
Q Consensus 229 ~ 229 (243)
+
T Consensus 163 v 163 (174)
T PF05042_consen 163 V 163 (174)
T ss_pred h
Confidence 3
No 103
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.16 E-value=0.008 Score=38.00 Aligned_cols=67 Identities=24% Similarity=0.485 Sum_probs=51.4
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhh
Q psy7436 89 IREAFRVFDKDGNGFISAAELRHVMTNLGE--KLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARK 160 (243)
Q Consensus 89 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~ 160 (243)
+..+|..+.. +.+.|+.++|..+|+.... .++...+..++..+..+..+. ..+.+++++|..++.+.
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~----~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNR----QKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHH----CTTEEEHHHHHHHHHST
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhc----ccCCcCHHHHHHHHCCC
Confidence 6788999955 7899999999999987643 468999999999886553222 23457888999888765
No 104
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.13 E-value=0.0023 Score=43.04 Aligned_cols=62 Identities=19% Similarity=0.419 Sum_probs=43.6
Q ss_pred ccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHH
Q psy7436 84 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLT 155 (243)
Q Consensus 84 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~ 155 (243)
.....+.-.|..+|.|++|.|+..|+..+...+ ......+...+..+|.|+||. |++.|+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~--------Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGK--------ISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSS--------EEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCC--------CCHHHHcc
Confidence 345667888999999999999999998887654 356667889999999998887 56657754
No 105
>KOG4065|consensus
Probab=95.96 E-value=0.021 Score=37.69 Aligned_cols=59 Identities=34% Similarity=0.507 Sum_probs=42.1
Q ss_pred hhhhc--CCCCCcCHHHHHHHHHHc------CC---C-CCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHH
Q psy7436 5 YGSLL--DGDGTITTKELGTVMRSL------GQ---N-PTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEF 72 (243)
Q Consensus 5 ~f~~f--d~~g~i~~~ef~~~l~~l------~~---~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef 72 (243)
+|+++ |++|.|+--|+..++-.. |. + .++.|+..++...-.+ .|.+++|.|+|.||
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~D------------dDfN~DG~IDYgEf 139 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDD------------DDFNGDGVIDYGEF 139 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcc------------cccCCCceeeHHHH
Confidence 67777 899999999999988664 22 2 2566776666554333 23449999999999
Q ss_pred HHH
Q psy7436 73 LTM 75 (243)
Q Consensus 73 ~~~ 75 (243)
+..
T Consensus 140 lK~ 142 (144)
T KOG4065|consen 140 LKR 142 (144)
T ss_pred Hhh
Confidence 864
No 106
>KOG0046|consensus
Probab=95.85 E-value=0.044 Score=45.94 Aligned_cols=66 Identities=27% Similarity=0.581 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC---CCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhh
Q psy7436 86 EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK---LTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARK 160 (243)
Q Consensus 86 ~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~ 160 (243)
...++..|...| +++|+|+..++..++.+.+.. ...+++..++...+.+.+|. |+|++|+..+...
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~--------v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGR--------VEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCc--------cCHHHHHHHHHhh
Confidence 345788999999 999999999999999987644 35788999999999987776 7888999977665
No 107
>KOG0998|consensus
Probab=95.65 E-value=0.019 Score=52.16 Aligned_cols=203 Identities=21% Similarity=0.355 Sum_probs=139.1
Q ss_pred hhhhhhhc--CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhh
Q psy7436 2 IEEYGSLL--DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARK 79 (243)
Q Consensus 2 ~~~~f~~f--d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~ 79 (243)
++.+|+.+ .++|.|+..+-..++..-| +.+..+-++|...+.. +.|.++..+|...+...
T Consensus 13 ~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~----------------~~g~l~~q~f~~~lrlv 74 (847)
T KOG0998|consen 13 FDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSS----------------GKGFLNRQGFYAALRLV 74 (847)
T ss_pred HHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccc----------------cCCccccccccccchHh
Confidence 45566666 6899999999999988765 5788888888888876 66777777776554400
Q ss_pred c----------------------------------C-------------CcccHHHHHHHHHhhcCCCCCcccHHHHHHH
Q psy7436 80 M----------------------------------K-------------DTDSEEEIREAFRVFDKDGNGFISAAELRHV 112 (243)
Q Consensus 80 ~----------------------------------~-------------~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~ 112 (243)
. . ......+...+|....+. +|.++....+.+
T Consensus 75 a~aq~~~~~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pi 153 (847)
T KOG0998|consen 75 AQAQSGRELSAKKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPI 153 (847)
T ss_pred hhhhcccCcCccccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhh
Confidence 0 0 001113355556666544 677777777766
Q ss_pred HHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhh--------------------------------
Q psy7436 113 MTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARK-------------------------------- 160 (243)
Q Consensus 113 l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~-------------------------------- 160 (243)
+..-. ++.+.+..++...+.+.+|.+ +..+|.-.+...
T Consensus 154 l~~s~--Lp~~~l~~iw~l~d~d~~g~L--------d~~ef~~am~l~~~~l~~~~~p~P~~~p~~lIpps~~~~~~~~~ 223 (847)
T KOG0998|consen 154 LLNSK--LPSDVLGRIWELSDIDKDGNL--------DRDEFAVAMHLINDLLNGNSEPVPSRLPPSLIPPSKSELSANSS 223 (847)
T ss_pred hhcCC--CChhhhccccccccccccCCC--------ChhhhhhhhhHHHHHhhcccCCCCccCCcccCCcchhcccccCc
Confidence 65433 666667777777777766663 444544332210
Q ss_pred ----------------------------------------------------cCCCCcHHHHHHHHHhhcCCCCCcccHH
Q psy7436 161 ----------------------------------------------------MKDTDSEEEIREAFRVFDKDGNGFISAA 188 (243)
Q Consensus 161 ----------------------------------------------------~~~~~~~~~~~~~f~~~D~~~~G~i~~~ 188 (243)
.........+..+|...|.+++|.|+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp~d~~~~~~if~q~d~~~dG~I~s~ 303 (847)
T KOG0998|consen 224 SKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSPSDKQKYSKIFSQVDKDNDGSISSN 303 (847)
T ss_pred ccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccChHHHHHHHHHHHhccccCCCccccc
Confidence 0001112346678999999999999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhc
Q psy7436 189 ELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIMG 235 (243)
Q Consensus 189 e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~ 235 (243)
+.+..+...| ++...+..++...|..+.|.+++++|+-.+.....
T Consensus 304 ~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~ 348 (847)
T KOG0998|consen 304 EARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQ 348 (847)
T ss_pred ccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhhhhhh
Confidence 9999887755 88999999999999999999999988866554433
No 108
>KOG1707|consensus
Probab=95.58 E-value=0.13 Score=44.03 Aligned_cols=130 Identities=18% Similarity=0.284 Sum_probs=77.0
Q ss_pred CCCCCcCHHHHHHHHHH-cCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHH-----------
Q psy7436 10 DGDGTITTKELGTVMRS-LGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMA----------- 77 (243)
Q Consensus 10 d~~g~i~~~ef~~~l~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~----------- 77 (243)
|.+|.++-.|+-..-+. ++.+++..++..+....+...+ .++ -...++..-|+.+-.
T Consensus 207 d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p-~gv----------~~~~ltl~GFLfL~~lfiergr~Ett 275 (625)
T KOG1707|consen 207 DNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICP-DGV----------YERGLTLPGFLFLNTLFIERGRHETT 275 (625)
T ss_pred ccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcC-chh----------hhccccccchHHHHHHHHHhccccch
Confidence 89999999999988766 6888888777766655544322 111 112223333332221
Q ss_pred -----------------hhcC-------------CcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHH
Q psy7436 78 -----------------RKMK-------------DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 127 (243)
Q Consensus 78 -----------------~~~~-------------~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~ 127 (243)
.++. .+....-+..+|..+|.+++|.++..|+..++...+... +..
T Consensus 276 W~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~p---W~~- 351 (625)
T KOG1707|consen 276 WTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSP---WTS- 351 (625)
T ss_pred hhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCC---CCC-
Confidence 0000 011124478899999999999999999999888765322 000
Q ss_pred HHHHhCcCCCCccccCCCCCCChHHHHHHHHhh
Q psy7436 128 MIREADIDGDGQVNYEGNGTIDFPEFLTMMARK 160 (243)
Q Consensus 128 l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~ 160 (243)
... ...+. .+..|.++++.|+..|.-.
T Consensus 352 ---~~~-~~~t~--~~~~G~ltl~g~l~~WsL~ 378 (625)
T KOG1707|consen 352 ---SPY-KDSTV--KNERGWLTLNGFLSQWSLM 378 (625)
T ss_pred ---Ccc-cccce--ecccceeehhhHHHHHHHH
Confidence 000 01111 1256678888988877654
No 109
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.51 E-value=0.68 Score=33.37 Aligned_cols=103 Identities=20% Similarity=0.215 Sum_probs=60.1
Q ss_pred CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhcc------------------------------c-------cccchhh
Q psy7436 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVD------------------------------A-------DENVESN 52 (243)
Q Consensus 10 d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~------------------------------~-------~~~~~~~ 52 (243)
|+||.|.+-|-.+.++.+|+++--.-+..++-... + ...+..-
T Consensus 19 d~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD~eGrFvp~kF 98 (174)
T PF05042_consen 19 DKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYDTEGRFVPQKF 98 (174)
T ss_pred CCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccccCCcCCHHHH
Confidence 89999999999999999987653222221110000 0 0002222
Q ss_pred hhhhhhhhccCCCccchHHHHHHHHhhcCCcc------cHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q psy7436 53 LQYAELFVYHGNGTIDFPEFLTMMARKMKDTD------SEEEIREAFRVFDKDGNGFISAAELRHVM 113 (243)
Q Consensus 53 ~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~------~~~~l~~~f~~~D~~~~g~i~~~e~~~~l 113 (243)
..++..++..+.+.+++.|....+.......+ ..-++...+... .+++|.+.+++++.+.
T Consensus 99 e~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 99 EEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 23344444446778888888887765433222 234455555554 5668899988887764
No 110
>KOG4578|consensus
Probab=94.44 E-value=0.044 Score=43.18 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=51.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHH---HHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhc
Q psy7436 168 EEIREAFRVFDKDGNGFISAAEL---RHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIMG 235 (243)
Q Consensus 168 ~~~~~~f~~~D~~~~G~i~~~e~---~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~ 235 (243)
..+.--|..+|+|.++.|.+.|. +++|..-. -..+-...+++-.|.|+|.+|++.|+..++.....
T Consensus 333 Rvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 333 RVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred heeeeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 34566799999999999999995 45554432 13456778999999999999999999999985543
No 111
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.27 E-value=0.38 Score=34.34 Aligned_cols=65 Identities=18% Similarity=0.366 Sum_probs=49.8
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhC---CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhccc
Q psy7436 173 AFRVFDKDGNGFISAAELRHVMTNLG---EKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIMGNT 237 (243)
Q Consensus 173 ~f~~~D~~~~G~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~ 237 (243)
.|-.+-......|+...|..+|+..+ ..++..+++.+|..+-.....+|+|++|..+|..+....
T Consensus 7 ~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~ 74 (154)
T PF05517_consen 7 AFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKK 74 (154)
T ss_dssp HHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHh
Confidence 34344456677899999999999986 358999999999998766667899999999998765543
No 112
>KOG1955|consensus
Probab=94.06 E-value=0.16 Score=42.42 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=54.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q psy7436 169 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHI 233 (243)
Q Consensus 169 ~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 233 (243)
-+..-|+.+-.|-.|.|+..--+.++.... ++-.++..|++..|.+.||-+++.||+..+...
T Consensus 232 YYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 232 YYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 356678889999999999888888877665 677899999999999999999999999887643
No 113
>KOG1265|consensus
Probab=94.03 E-value=2.6 Score=38.32 Aligned_cols=126 Identities=11% Similarity=0.263 Sum_probs=92.1
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcC--CCCccccCCCCCCChHHHHHHHHhhcCCCCcHHHHHHHH
Q psy7436 97 DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID--GDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAF 174 (243)
Q Consensus 97 D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~--~~~~i~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f 174 (243)
..+..|.|....+.+.+.+- -.+..++..+..+... ....|+.+ ..+++.|..++..++.. ..+..+|
T Consensus 158 qvn~~grip~knI~k~F~~~---k~~KrVe~al~~~gLp~~k~dsI~~d---~f~~e~f~~~l~klcpR----~eie~iF 227 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSAD---KKEKRVEKALEACGLPSGKNDSIEPD---DFTLEKFYRLLNKLCPR----PEIEEIF 227 (1189)
T ss_pred cccccccccHHHHHHHhhcC---CchhHHHHHHHhcCCCCCCcCccChh---hccHHHHHHHHHhcCCc----hhHHHHH
Confidence 45678888888887776542 2335566666655443 32344333 34677777777776543 6788999
Q ss_pred HhhcCCCCCcccHHHHHHHHHHh----------CCCCCHHHHHHHHHhcCCCC----CCcccHHHHHHHHHH
Q psy7436 175 RVFDKDGNGFISAAELRHVMTNL----------GEKLTDEEVDEMIREADIDG----DGQVNYEVYTIYCVH 232 (243)
Q Consensus 175 ~~~D~~~~G~i~~~e~~~~l~~~----------~~~~~~~~~~~~~~~~d~~~----~g~i~~~eF~~~~~~ 232 (243)
..+..++.-++|.++|..+|+.- .+.+.+..+..+++.+.+|. .|.++-+.|+.|+..
T Consensus 228 ~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 228 RKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred HHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 99999999999999999999753 34678899999999998875 678999999988764
No 114
>KOG2243|consensus
Probab=93.90 E-value=0.098 Score=49.01 Aligned_cols=64 Identities=23% Similarity=0.430 Sum_probs=54.5
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhcc
Q psy7436 172 EAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIMGN 236 (243)
Q Consensus 172 ~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~ 236 (243)
..|+.+|+++.|.|+..+|..++.... ..+..+++-++.....+.+..++|++|+..+..+.-.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rfhepakd 4124 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEPAKD 4124 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHhcCchhh
Confidence 368899999999999999999987643 4678899999999999999999999999887655443
No 115
>PLN02952 phosphoinositide phospholipase C
Probab=93.77 E-value=0.93 Score=39.71 Aligned_cols=86 Identities=15% Similarity=0.300 Sum_probs=60.8
Q ss_pred CCCChHHHHHHHHhhc-CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhc----C---C
Q psy7436 146 GTIDFPEFLTMMARKM-KDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIREA----D---I 215 (243)
Q Consensus 146 ~~i~~~ef~~~~~~~~-~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~----d---~ 215 (243)
|.++|.+|..+..... ........+..+|..+-. +.+.|+.++|..+|.... ...+.+.+..++..+ . .
T Consensus 15 g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~ 93 (599)
T PLN02952 15 GSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTR 93 (599)
T ss_pred CCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccccc
Confidence 4578889987777653 223356889999999954 446899999999999864 235666666665543 1 1
Q ss_pred CCCCcccHHHHHHHHHH
Q psy7436 216 DGDGQVNYEVYTIYCVH 232 (243)
Q Consensus 216 ~~~g~i~~~eF~~~~~~ 232 (243)
...+.++++.|..|+..
T Consensus 94 ~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 94 YTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccCcCHHHHHHHHcC
Confidence 12345899999999974
No 116
>KOG3555|consensus
Probab=93.67 E-value=0.1 Score=41.54 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=53.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q psy7436 168 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHI 233 (243)
Q Consensus 168 ~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 233 (243)
..+.-.|..+|.+.+|.++..|++.+-.. =.+.-+..+|...|...||.|+-.||+.++...
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 45777999999999999999998876433 356788999999999999999999999988743
No 117
>KOG1265|consensus
Probab=93.66 E-value=1.7 Score=39.45 Aligned_cols=89 Identities=12% Similarity=0.277 Sum_probs=67.8
Q ss_pred cchHHHHHHHHhhcCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh----------CCCCCHHHHHHHHHHhCcCC
Q psy7436 67 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL----------GEKLTDEEVDEMIREADIDG 136 (243)
Q Consensus 67 i~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~----------~~~~~~~~~~~l~~~~~~~~ 136 (243)
.+++.|..++..+ -...++..+|..+..++.-+++..+|..+++.- ..+..+..+..++..+..+.
T Consensus 205 f~~e~f~~~l~kl----cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~ 280 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKL----CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNS 280 (1189)
T ss_pred ccHHHHHHHHHhc----CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCch
Confidence 3555556655443 234568999999988888999999999999764 34578899999999999887
Q ss_pred CCccccCCCCCCChHHHHHHHHhhcCC
Q psy7436 137 DGQVNYEGNGTIDFPEFLTMMARKMKD 163 (243)
Q Consensus 137 ~~~i~~~~~~~i~~~ef~~~~~~~~~~ 163 (243)
+.. ..|.|+-+.|+..+......
T Consensus 281 ~~a----~~gqms~dgf~ryl~gdEn~ 303 (1189)
T KOG1265|consen 281 DNA----EKGQMSTDGFVRYLMGDENA 303 (1189)
T ss_pred hhh----hccccchhhhHHHhhCCccc
Confidence 765 56668999999988774333
No 118
>KOG4347|consensus
Probab=93.54 E-value=0.13 Score=44.36 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=60.4
Q ss_pred CChHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHH
Q psy7436 148 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEV 225 (243)
Q Consensus 148 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 225 (243)
++++.|..++...........-+.++|+.+|.+.+|.|+..++...|..+...-.-+.+..+++.+|++.+ ..+.++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cccccc
Confidence 55666666666665555555668899999999999999999999999888655556678889999999887 766655
No 119
>KOG0035|consensus
Probab=93.54 E-value=0.4 Score=43.36 Aligned_cols=92 Identities=25% Similarity=0.302 Sum_probs=70.5
Q ss_pred hhhhhhc--CCCCCcCHHHHHHHHHHcCCCCCH-----HHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHH
Q psy7436 3 EEYGSLL--DGDGTITTKELGTVMRSLGQNPTE-----AELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTM 75 (243)
Q Consensus 3 ~~~f~~f--d~~g~i~~~ef~~~l~~l~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~ 75 (243)
+..|+.| ...|.+++++|..+|-.+|.+.-. .++..++...+.. ..|.+++.+|...
T Consensus 750 rAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l----------------~~~qv~~~e~~dd 813 (890)
T KOG0035|consen 750 RALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPL----------------IQGQVQLLEFEDD 813 (890)
T ss_pred HHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcc----------------cccceeHHHHHhH
Confidence 3455555 578889999999999999987664 3455555555555 7899999999999
Q ss_pred HHhhcCCcccHHHHHHHHHhhcCCCCCcccHHHHHH
Q psy7436 76 MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRH 111 (243)
Q Consensus 76 ~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~ 111 (243)
+.+.........++...|..+-.++. ++..+++..
T Consensus 814 l~R~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 814 LEREYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhhhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 98887777778888888888866554 677777765
No 120
>KOG0035|consensus
Probab=93.07 E-value=1.6 Score=39.77 Aligned_cols=98 Identities=24% Similarity=0.290 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCH--HHHHHHHHHh---CcCCCCccccCCCCCCChHHHHHHHHhh
Q psy7436 86 EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTD--EEVDEMIREA---DIDGDGQVNYEGNGTIDFPEFLTMMARK 160 (243)
Q Consensus 86 ~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~--~~~~~l~~~~---~~~~~~~i~~~~~~~i~~~ef~~~~~~~ 160 (243)
-.+++..|+.++....|.+++.++..++..+|...-. .-+..+++.. +.+. .+.+++.+|...+...
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~--------~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLI--------QGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCccc--------ccceeHHHHHhHhhhh
Confidence 3568999999999999999999999999999977654 2234444443 3332 3447888999999988
Q ss_pred cCCCCcHHHHHHHHHhhcCCCCCcccHHHHHH
Q psy7436 161 MKDTDSEEEIREAFRVFDKDGNGFISAAELRH 192 (243)
Q Consensus 161 ~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~ 192 (243)
.........+..+|+.+-+++. +|..+|+.+
T Consensus 818 ~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 818 YEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 8888888899999999866666 788888877
No 121
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=93.02 E-value=0.097 Score=31.63 Aligned_cols=55 Identities=29% Similarity=0.514 Sum_probs=39.7
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCC-------CCcccHHHHHH
Q psy7436 166 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDG-------DGQVNYEVYTI 228 (243)
Q Consensus 166 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~-------~g~i~~~eF~~ 228 (243)
..+.+..+|+.+ .++.++||..||++.| ++++++-+...|..-. .|.++|..|+.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l-------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSL-------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHc-------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 347889999999 8889999999999985 3344566666664432 26688888864
No 122
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=93.02 E-value=1.5 Score=28.04 Aligned_cols=63 Identities=13% Similarity=0.265 Sum_probs=43.5
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHh-------C----CCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q psy7436 168 EEIREAFRVFDKDGNGFISAAELRHVMTNL-------G----EKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHI 233 (243)
Q Consensus 168 ~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~-------~----~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 233 (243)
+.++.+|+.+ .|.+|.++...|...|..+ | +.-.+.-+...|.... ....|+.+.|+.|+..-
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhC
Confidence 6788899999 8899999999999998764 2 1226777888888873 45689999999998754
No 123
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=92.49 E-value=0.35 Score=33.70 Aligned_cols=78 Identities=19% Similarity=0.295 Sum_probs=44.2
Q ss_pred CCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcCCcccHHHHHH
Q psy7436 12 DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIRE 91 (243)
Q Consensus 12 ~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~ 91 (243)
=+.||++||.+.-+..- .+...++.++..+..+.. +...+..+.|+|+-|..++...+....+.+--++
T Consensus 5 ~~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~---------~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~h 73 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGS---------LAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQH 73 (138)
T ss_dssp -S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSG---------GGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHH
T ss_pred eeccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCc---------ccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHH
Confidence 36799999999988773 355677888888765411 1111245678888888888877776666777778
Q ss_pred HHHhhcCCC
Q psy7436 92 AFRVFDKDG 100 (243)
Q Consensus 92 ~f~~~D~~~ 100 (243)
+|..|-...
T Consensus 74 LF~sF~~~~ 82 (138)
T PF14513_consen 74 LFLSFQKKP 82 (138)
T ss_dssp HHHHS----
T ss_pred HHHHHhCcc
Confidence 887775443
No 124
>KOG0042|consensus
Probab=91.64 E-value=0.4 Score=41.00 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=58.4
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q psy7436 170 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHI 233 (243)
Q Consensus 170 ~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 233 (243)
...-|..+|.++.|.++..+..++|+..+...+++.+++++...+.+..|.+...||.+.+...
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 4567889999999999999999999999988999999999999999999999999999877643
No 125
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=91.33 E-value=0.81 Score=32.68 Aligned_cols=62 Identities=19% Similarity=0.356 Sum_probs=47.2
Q ss_pred hhhhhhhc-----CCCCCcCHHHHHHHHHHcCC---CCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHH
Q psy7436 2 IEEYGSLL-----DGDGTITTKELGTVMRSLGQ---NPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFL 73 (243)
Q Consensus 2 ~~~~f~~f-----d~~g~i~~~ef~~~l~~l~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~ 73 (243)
|+.+|..| .+...|+-..|..+++..++ .++..++.-+|..+... +...|+|++|.
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k----------------~~~~I~f~~F~ 64 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAK----------------GARKITFEQFL 64 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-S----------------S-SEEEHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcC----------------CCcccCHHHHH
Confidence 45677777 56667999999999999755 47888888899987665 56679999999
Q ss_pred HHHHhh
Q psy7436 74 TMMARK 79 (243)
Q Consensus 74 ~~~~~~ 79 (243)
.++...
T Consensus 65 ~aL~~l 70 (154)
T PF05517_consen 65 EALAEL 70 (154)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988643
No 126
>KOG4347|consensus
Probab=91.27 E-value=0.51 Score=40.95 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=59.5
Q ss_pred cchHHHHHHHHhhcCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccC
Q psy7436 67 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 143 (243)
Q Consensus 67 i~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ 143 (243)
++|..|..++...........-+..+|+.+|.+.+|.|+..++...|..+......+.+..+++.++.+.+ ..+.+
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e 610 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDRE 610 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccc
Confidence 55666666665555444445557889999999999999999999999988777777888899999999987 65444
No 127
>KOG3866|consensus
Probab=91.11 E-value=0.61 Score=36.71 Aligned_cols=81 Identities=15% Similarity=0.252 Sum_probs=52.9
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-----CCCCCHHH-----------HHHHHHhcC
Q psy7436 151 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL-----GEKLTDEE-----------VDEMIREAD 214 (243)
Q Consensus 151 ~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~-----~~~~~~~~-----------~~~~~~~~d 214 (243)
.+...+|.....-....-.-...|..+|.+++|.++-.|+...+..- +..-.+++ -..+++.+|
T Consensus 227 dQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vD 306 (442)
T KOG3866|consen 227 DQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVD 306 (442)
T ss_pred HHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 34444554433222222234568889999999999999988776432 22111111 234689999
Q ss_pred CCCCCcccHHHHHHHHH
Q psy7436 215 IDGDGQVNYEVYTIYCV 231 (243)
Q Consensus 215 ~~~~g~i~~~eF~~~~~ 231 (243)
+|.|.-|+++||++--.
T Consensus 307 tNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 307 TNQDRLVTLEEFLNDTD 323 (442)
T ss_pred cchhhhhhHHHHHhhhh
Confidence 99999999999997544
No 128
>KOG1955|consensus
Probab=90.16 E-value=0.79 Score=38.54 Aligned_cols=66 Identities=27% Similarity=0.431 Sum_probs=55.8
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhh
Q psy7436 85 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARK 160 (243)
Q Consensus 85 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~ 160 (243)
..+.+..-|+.+..|..|.|+..--++++.+-. ++-.++..|+...|.+.||. +++.||+..+.-.
T Consensus 229 QReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGA--------LtL~EFcAAfHLV 294 (737)
T KOG1955|consen 229 QREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGA--------LTLSEFCAAFHLV 294 (737)
T ss_pred HHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCcccc--------ccHHHHHhhHhhe
Confidence 345567789999999999999999999988755 78899999999999999988 6777999887654
No 129
>KOG3555|consensus
Probab=89.71 E-value=0.77 Score=36.75 Aligned_cols=64 Identities=19% Similarity=0.080 Sum_probs=49.2
Q ss_pred chhhhhhhhhhhccCCCccchHHHHHHHHhhcCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC
Q psy7436 49 VESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLG 117 (243)
Q Consensus 49 ~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~ 117 (243)
+....=||..+|.+.++.++..|...+.... .+.=++..|+..|...+|.|+..|...++..-+
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~ldk-----nE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIELDK-----NEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhccC-----chhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 4445555666666699999999987765433 445588899999999999999999999988766
No 130
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=89.63 E-value=2.5 Score=29.48 Aligned_cols=77 Identities=18% Similarity=0.290 Sum_probs=44.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCcc-ccCCCCCCChHHHHHHHHhhcCCCCcHHHHHHHHHhhcC
Q psy7436 101 NGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV-NYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDK 179 (243)
Q Consensus 101 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i-~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~ 179 (243)
-+.|++.||.+.-.=+. .+...+..++..+..+ |.+ .+...+.|+|+.|..++....+...+.+-...+|..|-.
T Consensus 5 ~~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~--g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~ 80 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGD--GSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQK 80 (138)
T ss_dssp -S-S-HHHHHHHHHHHH--H----HHHHHHHH-HT--SGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS--
T ss_pred eeccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcC--CcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 35678888877654332 2444566677776533 333 445566899999999999998888888888999998855
Q ss_pred CC
Q psy7436 180 DG 181 (243)
Q Consensus 180 ~~ 181 (243)
..
T Consensus 81 ~~ 82 (138)
T PF14513_consen 81 KP 82 (138)
T ss_dssp --
T ss_pred cc
Confidence 44
No 131
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=89.40 E-value=1.9 Score=28.28 Aligned_cols=84 Identities=18% Similarity=0.239 Sum_probs=54.4
Q ss_pred CCCCCcCHHHHHHHHHHcC--CCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcCCcccHH
Q psy7436 10 DGDGTITTKELGTVMRSLG--QNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEE 87 (243)
Q Consensus 10 d~~g~i~~~ef~~~l~~l~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~ 87 (243)
--||.++..|...+-..+. ..+++.+...+...+... .....++.+|...+...........
T Consensus 11 ~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~r~~ 74 (104)
T cd07313 11 RADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEAL----------------EEEAPDLYEFTSLIKEHFDYEERLE 74 (104)
T ss_pred HHcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH----------------HHhCCCHHHHHHHHHHhCCHHHHHH
Confidence 4689999999888776542 256778888887777665 5566889999888765432222233
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHH
Q psy7436 88 EIREAFRVFDKDGNGFISAAELRH 111 (243)
Q Consensus 88 ~l~~~f~~~D~~~~g~i~~~e~~~ 111 (243)
-+..+|... --+|.++..|-.-
T Consensus 75 ~l~~L~~vA--~ADG~~~~~E~~~ 96 (104)
T cd07313 75 LVEALWEVA--YADGELDEYEEHL 96 (104)
T ss_pred HHHHHHHHH--HhcCCCCHHHHHH
Confidence 344445544 3367887777653
No 132
>PLN02952 phosphoinositide phospholipase C
Probab=89.19 E-value=5 Score=35.36 Aligned_cols=88 Identities=8% Similarity=0.148 Sum_probs=62.2
Q ss_pred CCCCCcCHHHHHHHHHHcCC--CCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcCCc-ccH
Q psy7436 10 DGDGTITTKELGTVMRSLGQ--NPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDT-DSE 86 (243)
Q Consensus 10 d~~g~i~~~ef~~~l~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~-~~~ 86 (243)
++.|.+++++|..+.+.+-. ..+..|+..+|..+..+ ++.++.++|..++...+... ...
T Consensus 12 ~~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-----------------~~~mt~~~l~~FL~~~Q~e~~~~~ 74 (599)
T PLN02952 12 NDSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-----------------GGHMGADQLRRFLVLHQDELDCTL 74 (599)
T ss_pred ccCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-----------------CCccCHHHHHHHHHHhCCCcCCCH
Confidence 56789999999988887742 23788999999988654 46899999999998776644 233
Q ss_pred HHHHHHHHhh----c---CCCCCcccHHHHHHHHH
Q psy7436 87 EEIREAFRVF----D---KDGNGFISAAELRHVMT 114 (243)
Q Consensus 87 ~~l~~~f~~~----D---~~~~g~i~~~e~~~~l~ 114 (243)
.....++..+ . ..+.+.++.+.|..+|.
T Consensus 75 ~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 75 AEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred HHHHHHHHHHHhhccccccccccCcCHHHHHHHHc
Confidence 3444444332 1 11234689999988885
No 133
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=89.06 E-value=0.42 Score=31.81 Aligned_cols=31 Identities=26% Similarity=0.516 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q psy7436 201 LTDEEVDEMIREADIDGDGQVNYEVYTIYCV 231 (243)
Q Consensus 201 ~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 231 (243)
+++++++.+...+-.|..|.|.|.||+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 7899999999999999999999999998765
No 134
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.04 E-value=1.9 Score=29.97 Aligned_cols=95 Identities=21% Similarity=0.300 Sum_probs=64.3
Q ss_pred hhhhcCCCCCcCHHHHHHHHHHc--CCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcCC
Q psy7436 5 YGSLLDGDGTITTKELGTVMRSL--GQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKD 82 (243)
Q Consensus 5 ~f~~fd~~g~i~~~ef~~~l~~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~ 82 (243)
+|.+.+.||.++..|.....+-+ ...++..++..+....... +...+++..|...+.+.+..
T Consensus 35 lf~Vm~ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~----------------~~Ea~d~y~fts~l~r~Ld~ 98 (148)
T COG4103 35 LFHVMEADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEA----------------GYEAIDLYSFTSVLKRHLDE 98 (148)
T ss_pred HHHHHhcccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----------------hHHHHHHHHHHHHHHHhcCH
Confidence 34444788999888866554332 3456888898888887776 77889999999999876665
Q ss_pred cccHHHHHHHHHhhcCCCCCcccHHHH---HHHHHHhC
Q psy7436 83 TDSEEEIREAFRVFDKDGNGFISAAEL---RHVMTNLG 117 (243)
Q Consensus 83 ~~~~~~l~~~f~~~D~~~~g~i~~~e~---~~~l~~~~ 117 (243)
.....-+...|...-. +|.++..|- +++..-+|
T Consensus 99 e~R~eli~~mweIa~A--Dg~l~e~Ed~vi~RvAeLLg 134 (148)
T COG4103 99 EQRLELIGLMWEIAYA--DGELDESEDHVIWRVAELLG 134 (148)
T ss_pred HHHHHHHHHHHHHHHc--cccccHHHHHHHHHHHHHhC
Confidence 5445556667776643 566665554 44444455
No 135
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=87.57 E-value=0.61 Score=31.10 Aligned_cols=32 Identities=22% Similarity=0.514 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHH
Q psy7436 30 NPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMA 77 (243)
Q Consensus 30 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~ 77 (243)
-|+++.++.+|..+..+ ..|.+.|.||+.-+.
T Consensus 3 iLtDeQFdrLW~e~Pvn----------------~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVN----------------AKGRLKYQEFLSKFS 34 (118)
T ss_dssp ---HHHHHHHHTTS-B-----------------TTS-EEHHHHHHHT-
T ss_pred cccHHHhhhhhhhCcCC----------------ccCCEeHHHHHHHcc
Confidence 37899999999999999 899999999998876
No 136
>KOG2243|consensus
Probab=87.51 E-value=1.2 Score=42.46 Aligned_cols=59 Identities=25% Similarity=0.552 Sum_probs=48.2
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHh
Q psy7436 92 AFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159 (243)
Q Consensus 92 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~ 159 (243)
.|+.+|+++.|.|+..+|..++... .+.+..+++-++.....+.+.. .+|++|+..+..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~--------~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDM--------FDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCcccc--------ccHHHHHHHhcC
Confidence 4778899999999999999998764 3578899999999988886655 677788887654
No 137
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=86.61 E-value=4.2 Score=26.06 Aligned_cols=60 Identities=20% Similarity=0.368 Sum_probs=34.1
Q ss_pred hhhhhhhc-CCCCCcCHHHHHHHHHHc-------CC----CCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccch
Q psy7436 2 IEEYGSLL-DGDGTITTKELGTVMRSL-------GQ----NPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69 (243)
Q Consensus 2 ~~~~f~~f-d~~g~i~~~ef~~~l~~l-------~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 69 (243)
++-+|+.. |.+|.++...|...|+.+ |- .-.+..++..|.... .+..|+.
T Consensus 5 yRylFslisd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~------------------~~~~I~~ 66 (90)
T PF09069_consen 5 YRYLFSLISDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ------------------LSPKITE 66 (90)
T ss_dssp HHHHHHHHS-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT------------------T-S-B-H
T ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC------------------CCCccCH
Confidence 34456666 999999999999999875 11 013344444444321 4567999
Q ss_pred HHHHHHHHhh
Q psy7436 70 PEFLTMMARK 79 (243)
Q Consensus 70 ~ef~~~~~~~ 79 (243)
++|+.++...
T Consensus 67 ~~Fl~wl~~e 76 (90)
T PF09069_consen 67 NQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHT-
T ss_pred HHHHHHHHhC
Confidence 9999998754
No 138
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=82.68 E-value=9.7 Score=24.04 Aligned_cols=48 Identities=13% Similarity=0.021 Sum_probs=36.5
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q psy7436 184 FISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCV 231 (243)
Q Consensus 184 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 231 (243)
.||..||..+.+..+++++++++..+++.+-.+.-...+-++=.+++.
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llk 61 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLK 61 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 589999999999999999999999999988766544555444444443
No 139
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=81.64 E-value=3.9 Score=24.82 Aligned_cols=48 Identities=10% Similarity=0.243 Sum_probs=26.1
Q ss_pred CCCChHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q psy7436 146 GTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL 197 (243)
Q Consensus 146 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~ 197 (243)
..+.|......+..... ...+..+...|+.-+.+.|+++||.+.++.+
T Consensus 7 p~~~F~~L~~~l~~~l~----~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHLP----PSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CcccHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34555555555544422 2444455555555566666666666666665
No 140
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=81.52 E-value=0.94 Score=27.38 Aligned_cols=62 Identities=24% Similarity=0.412 Sum_probs=38.1
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHH
Q psy7436 85 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLT 155 (243)
Q Consensus 85 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~ 155 (243)
..+.+...|+.+ .++.++|+..||+..| +++.++-+...+....+.. .....+..+|..|+.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l-------~pe~aey~~~~Mp~~~~~~-~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSL-------TPEQAEYCISRMPPYEGPD-GDAIPGAYDYESFTN 65 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS-----TTEEECHHHHC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHc-------CcHHHHHHHHHCcccCCCC-cCCCCCCcCHHHHHH
Confidence 456788999999 6778999999999885 4444566666665543211 001233456667654
No 141
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=81.52 E-value=5.4 Score=24.22 Aligned_cols=55 Identities=13% Similarity=0.194 Sum_probs=42.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhccccc
Q psy7436 182 NGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIMGNTYL 239 (243)
Q Consensus 182 ~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 239 (243)
+-.++..-+..++... ++......+...++.=..++|+.++|++.+....++..+
T Consensus 6 sp~~~F~~L~~~l~~~---l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD~lL 60 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKH---LPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGDQLL 60 (70)
T ss_pred CCcccHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 4457766777777666 777777888787776678899999999999988776543
No 142
>KOG4578|consensus
Probab=79.93 E-value=1.2 Score=35.39 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=43.4
Q ss_pred hhhhhhhhhhccCCCccchHHHHHHHHhhcCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy7436 51 SNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTN 115 (243)
Q Consensus 51 ~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~ 115 (243)
+++-.|..+|.+.++.|.-.|...+-.-.........=.+.+|+..|.|++..|+..|+..+|..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 45666667777788888777754433222222334444677788888888888888888888754
No 143
>KOG0998|consensus
Probab=79.72 E-value=2.7 Score=38.77 Aligned_cols=61 Identities=21% Similarity=0.425 Sum_probs=49.1
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q psy7436 170 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHI 233 (243)
Q Consensus 170 ~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 233 (243)
+..+|..+... .|.++..-.+.+|.... ++...+..+....|.+.+|.++..+|.-.+...
T Consensus 131 y~q~f~s~~p~-~g~~sg~~~~pil~~s~--Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~ 191 (847)
T KOG0998|consen 131 YDQIFRSLSPS-NGLLSGDKAKPILLNSK--LPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLI 191 (847)
T ss_pred HHHHHhccCCC-CCccccchhhhhhhcCC--CChhhhccccccccccccCCCChhhhhhhhhHH
Confidence 45567777554 88888888888876654 788889999999999999999999998766543
No 144
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=78.70 E-value=14 Score=23.35 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=31.6
Q ss_pred CCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhcccc
Q psy7436 11 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD 46 (243)
Q Consensus 11 ~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~ 46 (243)
+=..||..||..+-+..|+++++...+.+...+...
T Consensus 11 Kln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k 46 (85)
T PF11116_consen 11 KLNNITAKELLKYSKQYNISITKKQAEQIANILRGK 46 (85)
T ss_pred HHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 345699999999999999999999999999887765
No 145
>PLN02222 phosphoinositide phospholipase C 2
Probab=75.90 E-value=15 Score=32.42 Aligned_cols=67 Identities=18% Similarity=0.349 Sum_probs=51.4
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhcCC-CCCCcccHHHHHHHHHHhh
Q psy7436 166 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADI-DGDGQVNYEVYTIYCVHIM 234 (243)
Q Consensus 166 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~-~~~g~i~~~eF~~~~~~~~ 234 (243)
....+..+|..+-. ++.++.++|..+|.... ...+.+.+..++..+.. ...+.++++.|..||....
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~~ 92 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGDN 92 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCCC
Confidence 33688899999854 47999999999998864 23567788888887632 2356799999999998643
No 146
>PLN02228 Phosphoinositide phospholipase C
Probab=73.92 E-value=19 Score=31.70 Aligned_cols=67 Identities=16% Similarity=0.285 Sum_probs=51.5
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhcCCC----CCCcccHHHHHHHHHHhh
Q psy7436 166 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADID----GDGQVNYEVYTIYCVHIM 234 (243)
Q Consensus 166 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~----~~g~i~~~eF~~~~~~~~ 234 (243)
....+..+|..+-. ++.|+.++|.++|.... ...+...+..++..+... ..|.++.+.|..|+....
T Consensus 22 ~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~~ 94 (567)
T PLN02228 22 PPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSDT 94 (567)
T ss_pred CcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCcc
Confidence 45788899998854 36899999999998874 234567788888888653 346799999999998653
No 147
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=71.56 E-value=18 Score=23.56 Aligned_cols=66 Identities=15% Similarity=0.260 Sum_probs=40.1
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhh
Q psy7436 85 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARK 160 (243)
Q Consensus 85 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~ 160 (243)
....+..-|..+.. +|.|+.++|..|+ |..-+.+....||.....-.. + ....|+-+|...+|.+.
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~--i---~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRG--I---KGDSITKDELKEFWEQI 93 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT-------SSEE-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcC--C---ccCCcCHHHHHHHHHHh
Confidence 35567777887765 8999999999997 555677777777766543211 1 12236666777766654
No 148
>KOG2871|consensus
Probab=69.62 E-value=5.6 Score=32.44 Aligned_cols=66 Identities=27% Similarity=0.378 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCH-HHHHHHHHhcCCCCCCcccHHHHHHHH
Q psy7436 165 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTD-EEVDEMIREADIDGDGQVNYEVYTIYC 230 (243)
Q Consensus 165 ~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~-~~~~~~~~~~d~~~~g~i~~~eF~~~~ 230 (243)
...++++++|+.+|..++|.|+-+-++.++...+..+++ ..+..+=..+|+..-|.|-..+|..-+
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 345789999999999999999999999999998855554 445555556677776666666655443
No 149
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=69.53 E-value=23 Score=22.97 Aligned_cols=80 Identities=20% Similarity=0.232 Sum_probs=44.9
Q ss_pred CCcccHHHHHHHHHHhC--CCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCCCCcHHHHHHHHHhhc
Q psy7436 101 NGFISAAELRHVMTNLG--EKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFD 178 (243)
Q Consensus 101 ~g~i~~~e~~~~l~~~~--~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D 178 (243)
+|.++..|...+-..+. ..+++.+...+...+...... ..++.+|.+.+............+..+|...
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA- 83 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEE--------APDLYEFTSLIKEHFDYEERLELVEALWEVA- 83 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHhCCHHHHHHHHHHHHHHH-
Confidence 67888888766554321 246777777777766543222 2477788877766542222223334444443
Q ss_pred CCCCCcccHHHH
Q psy7436 179 KDGNGFISAAEL 190 (243)
Q Consensus 179 ~~~~G~i~~~e~ 190 (243)
-.+|.++..|-
T Consensus 84 -~ADG~~~~~E~ 94 (104)
T cd07313 84 -YADGELDEYEE 94 (104)
T ss_pred -HhcCCCCHHHH
Confidence 24566666663
No 150
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=68.73 E-value=29 Score=22.51 Aligned_cols=88 Identities=20% Similarity=0.362 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCCCC
Q psy7436 86 EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTD 165 (243)
Q Consensus 86 ~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~~~ 165 (243)
.+.++.+|..+- ..|+..+...+.+.+| +++.+++.+-.....+ .+.-..++..+
T Consensus 3 ~~~l~~~f~~i~----~~V~~~~Wk~laR~LG--Lse~~I~~i~~~~~~~--------------~eq~~qmL~~W----- 57 (96)
T cd08315 3 QETLRRSFDHFI----KEVPFDSWNRLMRQLG--LSENEIDVAKANERVT--------------REQLYQMLLTW----- 57 (96)
T ss_pred HhHHHHHHHHHH----HHCCHHHHHHHHHHcC--CCHHHHHHHHHHCCCC--------------HHHHHHHHHHH-----
Confidence 455777787773 3688889999999988 8888888887664322 11222222222
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy7436 166 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 210 (243)
Q Consensus 166 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~ 210 (243)
+ ...+. .-+...+.++|+.++.....+.++..+
T Consensus 58 ---------~--~~~G~-~At~~~L~~aL~~~~~~~~Ae~I~~~l 90 (96)
T cd08315 58 ---------V--NKTGR-KASVNTLLDALEAIGLRLAKESIQDEL 90 (96)
T ss_pred ---------H--HhhCC-CcHHHHHHHHHHHcccccHHHHHHHHH
Confidence 1 11222 356788899999988777777666554
No 151
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=68.05 E-value=11 Score=26.13 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=42.7
Q ss_pred CCCCCcCHHHHHHHHHHc--CCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcCCcccHH
Q psy7436 10 DGDGTITTKELGTVMRSL--GQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEE 87 (243)
Q Consensus 10 d~~g~i~~~ef~~~l~~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~ 87 (243)
--||.++.+|...+...+ ...++..+...+...++.. .....++.+++..+...........
T Consensus 35 ~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~r~~ 98 (140)
T PF05099_consen 35 KADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADEL----------------KQEPIDLEELLRELRDSLSPEERED 98 (140)
T ss_dssp HTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHH----------------HHHCCHHHHHHHHHCTS--HHHHHH
T ss_pred HcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH----------------HhccccHHHHHHHHHHhhchHHHHH
Confidence 357777777777666655 2334555566666655544 3345777787776654333222333
Q ss_pred HHHHHHHhhcCCCCCcccHHH
Q psy7436 88 EIREAFRVFDKDGNGFISAAE 108 (243)
Q Consensus 88 ~l~~~f~~~D~~~~g~i~~~e 108 (243)
-+..++..... +|.++..|
T Consensus 99 ll~~l~~ia~A--DG~~~~~E 117 (140)
T PF05099_consen 99 LLRMLIAIAYA--DGEISPEE 117 (140)
T ss_dssp HHHHHHHHCTC--TTC-SCCH
T ss_pred HHHHHHHHHhc--CCCCCHHH
Confidence 45555555544 45655444
No 152
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=67.44 E-value=10 Score=24.91 Aligned_cols=82 Identities=17% Similarity=0.171 Sum_probs=42.7
Q ss_pred CCCCCcCHHHHHHHHHHcC--CCCC---HHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcCCcc
Q psy7436 10 DGDGTITTKELGTVMRSLG--QNPT---EAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTD 84 (243)
Q Consensus 10 d~~g~i~~~ef~~~l~~l~--~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~ 84 (243)
--||.++.+|...+.+.+. ..++ ...+..++...... - -..+..++...+........
T Consensus 14 ~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~----------------~-~~~~~~~~~~~~~~~~~~~~ 76 (111)
T cd07176 14 AADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLAL----------------L-RPEGLAALLKAAAKLLPPEL 76 (111)
T ss_pred HhccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHH----------------H-HHhhHHHHHHHHHHhCCHHH
Confidence 4689999999888887763 2233 33344444332211 0 03445666666655443222
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHH
Q psy7436 85 SEEEIREAFRVFDKDGNGFISAAELR 110 (243)
Q Consensus 85 ~~~~l~~~f~~~D~~~~g~i~~~e~~ 110 (243)
...-+..++..... +|.++..|-.
T Consensus 77 r~~~~~~~~~ia~a--DG~~~~~E~~ 100 (111)
T cd07176 77 RETAFAVAVDIAAA--DGEVDPEERA 100 (111)
T ss_pred HHHHHHHHHHHHHc--cCCCCHHHHH
Confidence 22334444454433 5677766543
No 153
>KOG0042|consensus
Probab=66.72 E-value=11 Score=32.77 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=50.9
Q ss_pred CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcCCc
Q psy7436 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDT 83 (243)
Q Consensus 10 d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~ 83 (243)
|+.|+++..+..++|+..+...+++-...++...+.. -+|.+...||.++++......
T Consensus 605 ~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~----------------~~g~v~l~e~~q~~s~~~~g~ 662 (680)
T KOG0042|consen 605 DKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADEN----------------LNGFVELREFLQLMSAIKNGC 662 (680)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh----------------hcceeeHHHHHHHHHHHhcCC
Confidence 5789999999999999999889999999999998887 789999999999988765544
No 154
>KOG3866|consensus
Probab=66.17 E-value=13 Score=29.67 Aligned_cols=91 Identities=14% Similarity=0.238 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHHHhcccc-ccchhhhhhhhhhhccCCCccchHHHHHHHHhhcC----CcccH--------HH---HHH
Q psy7436 28 GQNPTEAELQDMINEVDAD-ENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMK----DTDSE--------EE---IRE 91 (243)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~----~~~~~--------~~---l~~ 91 (243)
+.+-+...+..+|...|.- .+.=-.-..|.+.|.+++|.++-.|.-+++...+. ..... .. -..
T Consensus 221 nhPGSkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREH 300 (442)
T KOG3866|consen 221 NHPGSKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREH 300 (442)
T ss_pred CCCCcHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHH
Confidence 3444677788888876652 11111334677788889999998888777753321 11111 11 234
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCC
Q psy7436 92 AFRVFDKDGNGFISAAELRHVMTNLGE 118 (243)
Q Consensus 92 ~f~~~D~~~~g~i~~~e~~~~l~~~~~ 118 (243)
+.+..|.|++..|+..+|...-..-.+
T Consensus 301 VMk~vDtNqDRlvtleEFL~~t~~kef 327 (442)
T KOG3866|consen 301 VMKQVDTNQDRLVTLEEFLNDTDNKEF 327 (442)
T ss_pred HHHhcccchhhhhhHHHHHhhhhhccc
Confidence 567888999999998888877655433
No 155
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=65.69 E-value=14 Score=21.65 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=29.7
Q ss_pred CCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhcccc
Q psy7436 12 DGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD 46 (243)
Q Consensus 12 ~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~ 46 (243)
+-.+|.+|+...|..|+-.++..++..+|..+...
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~~~ 41 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQVHGI 41 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999889999999999886543
No 156
>PLN02228 Phosphoinositide phospholipase C
Probab=65.57 E-value=47 Score=29.36 Aligned_cols=71 Identities=14% Similarity=0.269 Sum_probs=51.0
Q ss_pred ccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhh
Q psy7436 84 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGE--KLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARK 160 (243)
Q Consensus 84 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~ 160 (243)
....++..+|..+.. ++.++.++|..+|..... ..+.+.+..++..+....... ..+.++.+.|..++.+.
T Consensus 21 ~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 21 EPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFH----HHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhc----ccCccCHHHHHHHhcCc
Confidence 456778889988853 368999999999988743 245677888888886543222 23458888998888654
No 157
>KOG1785|consensus
Probab=65.21 E-value=68 Score=26.75 Aligned_cols=93 Identities=11% Similarity=0.129 Sum_probs=62.8
Q ss_pred hhhhhc-CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcCC
Q psy7436 4 EYGSLL-DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKD 82 (243)
Q Consensus 4 ~~f~~f-d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~ 82 (243)
+|++.+ .+.-.+....|+++|....-..+.-+..++-..+|-. .++.||.-||--+-.-.
T Consensus 179 ~FWr~~fg~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLt----------------cnd~iS~FEFDvFTRLF--- 239 (563)
T KOG1785|consen 179 EFWRKHFGKKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLT----------------CNDFISNFEFDVFTRLF--- 239 (563)
T ss_pred HHHHHhcCCcccccHHHHHHHHHhcCCCcchhHHHHhhceeccc----------------cccceeeehhhhHHHhh---
Confidence 344443 5666788999999999876555566677777777766 88899887775443222
Q ss_pred cccHHHHHHHHHhhcCCCCCc---ccHHHHHHHHHHh
Q psy7436 83 TDSEEEIREAFRVFDKDGNGF---ISAAELRHVMTNL 116 (243)
Q Consensus 83 ~~~~~~l~~~f~~~D~~~~g~---i~~~e~~~~l~~~ 116 (243)
.....+..-|..+..-+-|+ ++++|.+.-|+++
T Consensus 240 -qPw~tllkNWq~LavtHPGYmAFLTYDEVk~RLqk~ 275 (563)
T KOG1785|consen 240 -QPWKTLLKNWQTLAVTHPGYMAFLTYDEVKARLQKY 275 (563)
T ss_pred -ccHHHHHHhhhhhhccCCceeEEeeHHHHHHHHHHH
Confidence 12334555566666666674 7889988888765
No 158
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=64.34 E-value=29 Score=20.91 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=23.9
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHhcccc
Q psy7436 15 ITTKELGTVMRSLGQNPTEAELQDMINEVDAD 46 (243)
Q Consensus 15 i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~ 46 (243)
++.+++..+++.-|.++++.++.++++.-+..
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~ 45 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEK 45 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCc
Confidence 45667777888888888888888888875543
No 159
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=64.28 E-value=29 Score=20.90 Aligned_cols=48 Identities=10% Similarity=0.236 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q psy7436 185 ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVH 232 (243)
Q Consensus 185 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 232 (243)
++-+++..+++..|..++..++..+++.-+..+--..+-..+..++.-
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~G 61 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNG 61 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHH
Confidence 667788888888888888888888888866444444555555555543
No 160
>PLN02230 phosphoinositide phospholipase C 4
Probab=62.63 E-value=52 Score=29.27 Aligned_cols=67 Identities=15% Similarity=0.311 Sum_probs=48.6
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-C--CCCHHHHHHHHHhcCC-------CCCCcccHHHHHHHHHHh
Q psy7436 166 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLG-E--KLTDEEVDEMIREADI-------DGDGQVNYEVYTIYCVHI 233 (243)
Q Consensus 166 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~-~--~~~~~~~~~~~~~~d~-------~~~g~i~~~eF~~~~~~~ 233 (243)
....+..+|..+-.++ +.++.++|.++|.... . ..+.+.+..++..+-. -..+.++++.|..||...
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 4478999999995444 8999999999998865 2 2356666666654421 123469999999999764
No 161
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=62.13 E-value=41 Score=21.83 Aligned_cols=84 Identities=13% Similarity=0.167 Sum_probs=44.1
Q ss_pred CCCCCcCHHHHHHHHHHcC-CCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcC-Cc-ccH
Q psy7436 10 DGDGTITTKELGTVMRSLG-QNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMK-DT-DSE 86 (243)
Q Consensus 10 d~~g~i~~~ef~~~l~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~-~~-~~~ 86 (243)
--||.++..|...+-+.+. ..++..+...+...+... .....++.+|...+..... .+ ...
T Consensus 11 ~aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~r~ 74 (106)
T cd07316 11 KADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEG----------------KESDFGLEEYARQFRRACGGRPELLL 74 (106)
T ss_pred hccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----------------CcCCCCHHHHHHHHHHHHCCCHHHHH
Confidence 4689999888776655431 223333333333333322 2223677888877765431 12 222
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHH
Q psy7436 87 EEIREAFRVFDKDGNGFISAAELRH 111 (243)
Q Consensus 87 ~~l~~~f~~~D~~~~g~i~~~e~~~ 111 (243)
.-+..+|...-. ||.++..|-.-
T Consensus 75 ~~l~~l~~vA~A--DG~~~~~E~~~ 97 (106)
T cd07316 75 QLLEFLFQIAYA--DGELSEAEREL 97 (106)
T ss_pred HHHHHHHHHHHH--cCCCCHHHHHH
Confidence 334445554433 67777776543
No 162
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=60.85 E-value=43 Score=21.71 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=18.2
Q ss_pred CcCHHHHHHHHHHcCCCCCHHHHHHHHHh
Q psy7436 14 TITTKELGTVMRSLGQNPTEAELQDMINE 42 (243)
Q Consensus 14 ~i~~~ef~~~l~~l~~~l~~~~~~~~~~~ 42 (243)
.|...+++.+.+.+| +++.+|..+-..
T Consensus 16 ~V~~~~Wk~laR~LG--Lse~~I~~i~~~ 42 (96)
T cd08315 16 EVPFDSWNRLMRQLG--LSENEIDVAKAN 42 (96)
T ss_pred HCCHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 355677777777776 477777666554
No 163
>KOG4004|consensus
Probab=60.41 E-value=3.2 Score=30.60 Aligned_cols=55 Identities=16% Similarity=0.306 Sum_probs=38.6
Q ss_pred HHhhcC-CCCCcccHHHHHHHHHHhCCCCC-HHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q psy7436 174 FRVFDK-DGNGFISAAELRHVMTNLGEKLT-DEEVDEMIREADIDGDGQVNYEVYTIYCV 231 (243)
Q Consensus 174 f~~~D~-~~~G~i~~~e~~~~l~~~~~~~~-~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 231 (243)
|-.+|. .-+|++|..|+.-+=.. .++ +.-+..+|+..|.|.||.|+.+||..++-
T Consensus 193 f~qld~~p~d~~~sh~el~pl~ap---~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLRAP---LIPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eccccCCCccccccccccccccCC---cccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 334443 35788988886543211 122 34577899999999999999999998765
No 164
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=58.83 E-value=42 Score=20.96 Aligned_cols=61 Identities=11% Similarity=0.262 Sum_probs=38.4
Q ss_pred CCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCC-ccchHHHHHHHH
Q psy7436 13 GTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNG-TIDFPEFLTMMA 77 (243)
Q Consensus 13 g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~i~~~ef~~~~~ 77 (243)
..|+..+++++.+.+| +++.+|+.+-.... ...+.+++|.+.+-..... .-++...+.++.
T Consensus 7 d~v~~~~wk~~~R~LG--lse~~Id~ie~~~~--~~~Eq~yqmL~~W~~~~g~~~At~~~L~~aLr 68 (80)
T cd08313 7 DEVPPRRWKEFVRRLG--LSDNEIERVELDHR--RCRDAQYQMLKVWKERGPRPYATLQHLLSVLR 68 (80)
T ss_pred HhCCHHHHHHHHHHcC--CCHHHHHHHHHhCC--ChHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 3478889999999997 58888887755443 2345555555555543332 455555555554
No 165
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=58.18 E-value=49 Score=21.54 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=22.1
Q ss_pred CcCHHHHHHHHHHcCCCCCHHHHHHHHHhcccc
Q psy7436 14 TITTKELGTVMRSLGQNPTEAELQDMINEVDAD 46 (243)
Q Consensus 14 ~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~ 46 (243)
.|+..+++++.+.+| +++.+|..+-.....+
T Consensus 17 ~~~~~~wK~faR~lg--lse~~Id~I~~~~~~d 47 (97)
T cd08316 17 VMTLKDVKKFVRKSG--LSEPKIDEIKLDNPQD 47 (97)
T ss_pred HcCHHHHHHHHHHcC--CCHHHHHHHHHcCCCC
Confidence 467778888888887 5788887776654433
No 166
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=57.87 E-value=20 Score=22.26 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcCCcc
Q psy7436 31 PTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTD 84 (243)
Q Consensus 31 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~ 84 (243)
+++.|...+..+++.. ..|.++.+.|...+...+..+.
T Consensus 16 L~e~E~~tm~yyl~eY----------------~~~~~tVealV~aL~elLnt~~ 53 (81)
T cd07357 16 LSENERATLSYYLDEY----------------RSGHISVDALVMALFELLNTHE 53 (81)
T ss_pred cCHHHHHHHHHHHHHH----------------HcCCCCHHHHHHHHHHHhccHH
Confidence 6888888888888877 8899999999998887766443
No 167
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=56.42 E-value=53 Score=21.36 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=20.5
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHhcccc
Q psy7436 15 ITTKELGTVMRSLGQNPTEAELQDMINEVDAD 46 (243)
Q Consensus 15 i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~ 46 (243)
+...++...|.-+...|+++++.++...+...
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~ 51 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAAR 51 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhc
Confidence 56666777777777777777777776666444
No 168
>KOG3077|consensus
Probab=55.15 E-value=87 Score=24.54 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=50.9
Q ss_pred CcHHHHHHHHHhh-cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhcc
Q psy7436 165 DSEEEIREAFRVF-DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIMGN 236 (243)
Q Consensus 165 ~~~~~~~~~f~~~-D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~ 236 (243)
.....+...|..+ |..-+..|..+-+.+++..+|....+-.+.-+.-.++.-.-|..+.++|+.=+..+...
T Consensus 61 ~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~d 133 (260)
T KOG3077|consen 61 VSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGCD 133 (260)
T ss_pred ccHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCC
Confidence 3445666677665 66666789999999999999966555554445555555667889999998866655444
No 169
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=54.34 E-value=86 Score=23.13 Aligned_cols=41 Identities=7% Similarity=0.172 Sum_probs=30.3
Q ss_pred hhcCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHHhCcC
Q psy7436 95 VFDKDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIREADID 135 (243)
Q Consensus 95 ~~D~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~l~~~~~~~ 135 (243)
.+.++....++.++|.+.++.+. ..++.+.+..++..+..+
T Consensus 141 lHn~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~~~ 183 (185)
T cd00171 141 LHNPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIKNN 183 (185)
T ss_pred hcCcccCCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhC
Confidence 34455566899999999888663 478888888888776543
No 170
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=51.60 E-value=84 Score=22.20 Aligned_cols=76 Identities=16% Similarity=0.292 Sum_probs=45.9
Q ss_pred CCChHHHHHHHHhhc-------CCCCcH----HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH----
Q psy7436 147 TIDFPEFLTMMARKM-------KDTDSE----EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR---- 211 (243)
Q Consensus 147 ~i~~~ef~~~~~~~~-------~~~~~~----~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~---- 211 (243)
.|++++|...+.... ...... .....+|..+ |...=+.+-.+.+|..++++++..++.
T Consensus 48 ~Is~~ef~~~v~~~~~~~k~~~g~~~~~~~~~q~~~qvW~~~-------V~~~ll~~e~eklGi~Vs~~El~d~l~~g~~ 120 (145)
T PF13623_consen 48 KISYQEFQQRVEQATENYKQQNGRSPTEQEQNQIRNQVWNQM-------VQNILLEQEFEKLGITVSDDELQDMLNQGTN 120 (145)
T ss_pred EcCHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCccCHHHHHHHHhcCCC
Confidence 578888877665442 111111 2344455554 555556666677888888888888771
Q ss_pred ------hcCCCCCCcccHHHHHHH
Q psy7436 212 ------EADIDGDGQVNYEVYTIY 229 (243)
Q Consensus 212 ------~~d~~~~g~i~~~eF~~~ 229 (243)
-+-.+..|..+...|.+|
T Consensus 121 p~~~~~~~f~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 121 PMLQQNPFFNPQTGQFDRAKLKQF 144 (145)
T ss_pred chhhhccccCcccCCcCHHHHHhh
Confidence 122356788887777665
No 171
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=51.20 E-value=1.2e+02 Score=23.92 Aligned_cols=100 Identities=12% Similarity=0.115 Sum_probs=54.2
Q ss_pred CCCCCcCHHHHHHHHHHcC--CCCCHHH---HHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcCCcc
Q psy7436 10 DGDGTITTKELGTVMRSLG--QNPTEAE---LQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTD 84 (243)
Q Consensus 10 d~~g~i~~~ef~~~l~~l~--~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~ 84 (243)
--||.+|..|.. ..+.+. ..++.++ +..++... .....++.+|+..+......
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~-------------------k~~~~~l~~~~~~~~~~~~~-- 124 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG-------------------KEPDFPLREKLRQFRSVCGG-- 124 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh-------------------cccCCCHHHHHHHHHHHhcc--
Confidence 467778887776 333331 2344444 33333322 44558899999887654321
Q ss_pred cHHH----HHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhC
Q psy7436 85 SEEE----IREAFRVFDKDGNGFISAAELRHVMTNL-GEKLTDEEVDEMIREAD 133 (243)
Q Consensus 85 ~~~~----l~~~f~~~D~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~l~~~~~ 133 (243)
.... +...|...= -||.++..|-.-+.+-. ...++..+...+...+.
T Consensus 125 r~~l~~~lL~~l~~vA~--ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~ 176 (267)
T PRK09430 125 RFDLLRMFLEIQIQAAF--ADGSLHPNERQVLYVIAEELGFSRFQFDQLLRMMQ 176 (267)
T ss_pred cHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1122 233344432 36889988854433321 23478877777766543
No 172
>KOG1264|consensus
Probab=50.87 E-value=33 Score=31.47 Aligned_cols=130 Identities=15% Similarity=0.258 Sum_probs=71.5
Q ss_pred CCCCcCHHHHHHHHHHcCCCCCHHHHH-HHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcCCcccHHHH
Q psy7436 11 GDGTITTKELGTVMRSLGQNPTEAELQ-DMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEI 89 (243)
Q Consensus 11 ~~g~i~~~ef~~~l~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~l 89 (243)
.-..|+..+++..|....+..+...+. .-+.. +.. ..+.++|+.|..+....+........+
T Consensus 157 ~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~----------------~k~dlsf~~f~~ly~~lmfs~~~a~l~ 219 (1267)
T KOG1264|consen 157 RENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGA----------------RKDDLSFEQFHLLYKKLMFSQQKAILL 219 (1267)
T ss_pred hhhheeHHhhhcccccceEEechHHHHHHHHhH-hhh----------------ccccccHHHHHHHHHHHhhccchhhhh
Confidence 444577888888877776665544332 22222 112 578899999988776554332211111
Q ss_pred --HHHH--HhhcCCCCCcccHHHHHHHHHHhCCCCCH---HHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhh
Q psy7436 90 --REAF--RVFDKDGNGFISAAELRHVMTNLGEKLTD---EEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARK 160 (243)
Q Consensus 90 --~~~f--~~~D~~~~g~i~~~e~~~~l~~~~~~~~~---~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~ 160 (243)
...| ..-+......+...+|+++|..-...... ..+..+++.+-.+.-+.+ ..-.+.+.||+.++.+.
T Consensus 220 e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~---~EPyl~v~EFv~fLFSr 294 (1267)
T KOG1264|consen 220 EFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRET---AEPYLFVDEFVTFLFSR 294 (1267)
T ss_pred cccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhc---cCcceeHHHHHHHHhhc
Confidence 1111 11112223579999999998653222111 245556666655533332 23347889999988764
No 173
>KOG0039|consensus
Probab=50.54 E-value=49 Score=29.84 Aligned_cols=77 Identities=26% Similarity=0.483 Sum_probs=56.8
Q ss_pred CChHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh---C-----CCCCHHHHHHHHHhcCCCCCC
Q psy7436 148 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL---G-----EKLTDEEVDEMIREADIDGDG 219 (243)
Q Consensus 148 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~---~-----~~~~~~~~~~~~~~~d~~~~g 219 (243)
++++++. ....+.++.++..|...|. .+|.++.+++..++... + ...+.+....+++..|.+..|
T Consensus 4 ~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (646)
T KOG0039|consen 4 ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKG 76 (646)
T ss_pred cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccc
Confidence 5666777 3334456889999999998 99999999998888654 1 223455667788888999888
Q ss_pred cccHHHHHHHHH
Q psy7436 220 QVNYEVYTIYCV 231 (243)
Q Consensus 220 ~i~~~eF~~~~~ 231 (243)
.+.+.++...+.
T Consensus 77 y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 77 YITNEDLEILLL 88 (646)
T ss_pred eeeecchhHHHH
Confidence 888777665554
No 174
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=50.46 E-value=41 Score=18.38 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q psy7436 187 AAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCV 231 (243)
Q Consensus 187 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~ 231 (243)
.+|...+|..+| .++.++...+..+.. ....+-++.++...
T Consensus 3 ~~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~aL 43 (47)
T PF07499_consen 3 LEDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQAL 43 (47)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHHHH
Confidence 467788888888 678888888888864 34566777666544
No 175
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=50.41 E-value=63 Score=20.46 Aligned_cols=70 Identities=16% Similarity=0.119 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcCCcccHHHHHHHHHhhcCCCCCcccHHHH
Q psy7436 30 NPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAEL 109 (243)
Q Consensus 30 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~ 109 (243)
.+++.+.+..+...=. .+-.|++.+|...+...++.... .+...+=..+|--.++.||.-||
T Consensus 3 rITK~eA~~FW~~~Fg-----------------~r~IVPW~~F~~~L~~~h~~~~~-~~~~aLk~TiDlT~n~~iS~FeF 64 (85)
T PF02761_consen 3 RITKAEAAEFWKTSFG-----------------KRTIVPWSEFRQALQKVHPISSG-LEAMALKSTIDLTCNDYISNFEF 64 (85)
T ss_dssp --SSHHHHHHHHHHHT-----------------T-SEEEHHHHHHHHHHHS--SSH-HHHHHHHHHH-TTSSSEEEHHHH
T ss_pred eeccHHHHHHHHHHCC-----------------CCeEeeHHHHHHHHHHhcCCCch-HHHHHHHHHHhcccCCccchhhh
Confidence 4566777777765322 34679999999999877665543 44455567789899999999999
Q ss_pred HHHHHHhC
Q psy7436 110 RHVMTNLG 117 (243)
Q Consensus 110 ~~~l~~~~ 117 (243)
-.+.+-.+
T Consensus 65 dvFtRlFq 72 (85)
T PF02761_consen 65 DVFTRLFQ 72 (85)
T ss_dssp HHHHHHT-
T ss_pred HHHHHHHh
Confidence 88776543
No 176
>PLN02223 phosphoinositide phospholipase C
Probab=50.27 E-value=89 Score=27.42 Aligned_cols=68 Identities=7% Similarity=-0.042 Sum_probs=48.6
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHH---HHh-C-CCCCHHHHHHHHHhcCCC--------CCCcccHHHHHHHHHH
Q psy7436 166 SEEEIREAFRVFDKDGNGFISAAELRHVM---TNL-G-EKLTDEEVDEMIREADID--------GDGQVNYEVYTIYCVH 232 (243)
Q Consensus 166 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~l---~~~-~-~~~~~~~~~~~~~~~d~~--------~~g~i~~~eF~~~~~~ 232 (243)
..+.+..+|..+ ..+.|.++.+.+.++| ... | ...+.++++.+++.+-.. ..+.++.+.|..||..
T Consensus 14 ~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 347788999999 4778999999999998 433 2 345666667666654322 2256999999999986
Q ss_pred hh
Q psy7436 233 IM 234 (243)
Q Consensus 233 ~~ 234 (243)
..
T Consensus 93 ~~ 94 (537)
T PLN02223 93 TE 94 (537)
T ss_pred cc
Confidence 43
No 177
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=50.15 E-value=66 Score=20.56 Aligned_cols=59 Identities=19% Similarity=0.264 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCC---CCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHH
Q psy7436 18 KELGTVMRSLGQN---PTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMM 76 (243)
Q Consensus 18 ~ef~~~l~~l~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~ 76 (243)
.+++.+-+.||.+ +++..|+.+-..++.+.=.+.++++.+.|-......-+....+.++
T Consensus 14 r~WK~laR~Lg~~cral~d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL 75 (90)
T cd08780 14 KKWKPVGRSLQKNCRALRDPAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQAL 75 (90)
T ss_pred HHHHHHHHHHcccccccchhHHHHHHhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 4567777777744 7888888887776655323334444444433333333433333333
No 178
>PLN02222 phosphoinositide phospholipase C 2
Probab=50.15 E-value=54 Score=29.10 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=42.7
Q ss_pred hhhhhhhcCCCCCcCHHHHHHHHHHcCCC--CCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHh
Q psy7436 2 IEEYGSLLDGDGTITTKELGTVMRSLGQN--PTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMAR 78 (243)
Q Consensus 2 ~~~~f~~fd~~g~i~~~ef~~~l~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~ 78 (243)
+..+|..+.+++.|+.++|..+|....-. .+.+.+..++..+.... ..+.++++.|..++..
T Consensus 27 i~~if~~~~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~---------------~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 27 IKTIFEKYSENGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLL---------------HRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhh---------------hccCcCHHHHHHHhcC
Confidence 34556666346899999999999887543 35667777777653210 3566888888888764
No 179
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=49.49 E-value=66 Score=20.38 Aligned_cols=44 Identities=9% Similarity=0.154 Sum_probs=24.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHH
Q psy7436 184 FISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYT 227 (243)
Q Consensus 184 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~ 227 (243)
.|+..+|+..|.....-.+..+...+=..+|...+++|+-=||-
T Consensus 22 IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFd 65 (85)
T PF02761_consen 22 IVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFD 65 (85)
T ss_dssp EEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHH
T ss_pred EeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhH
Confidence 46666777666665433344555556666666666666644443
No 180
>KOG1264|consensus
Probab=49.39 E-value=80 Score=29.22 Aligned_cols=137 Identities=12% Similarity=0.198 Sum_probs=75.1
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHH-HHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCCCCcH
Q psy7436 89 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE-VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSE 167 (243)
Q Consensus 89 l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~~~~~ 167 (243)
++..+...|...-..|+..++..+|.......+... +..-+.....+ ..-++|++|...+..+.-.....
T Consensus 146 lrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~~---------k~dlsf~~f~~ly~~lmfs~~~a 216 (1267)
T KOG1264|consen 146 LRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGAR---------KDDLSFEQFHLLYKKLMFSQQKA 216 (1267)
T ss_pred HHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhhc---------cccccHHHHHHHHHHHhhccchh
Confidence 455556666555567888899888877665544322 21222222222 22378999998887765433222
Q ss_pred HHHHH----HHHhhcCCCCCcccHHHHHHHHHHhCCCCC---HHHHHHHHHhcCC-----CCCCcccHHHHHHHHHHhh
Q psy7436 168 EEIRE----AFRVFDKDGNGFISAAELRHVMTNLGEKLT---DEEVDEMIREADI-----DGDGQVNYEVYTIYCVHIM 234 (243)
Q Consensus 168 ~~~~~----~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~---~~~~~~~~~~~d~-----~~~g~i~~~eF~~~~~~~~ 234 (243)
..+.. +...-+...--.++..||+++|..-..... ...++.++..+-. .....+++.||+.++..-.
T Consensus 217 ~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLFSre 295 (1267)
T KOG1264|consen 217 ILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLFSRE 295 (1267)
T ss_pred hhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHhhcc
Confidence 21111 111112222357999999999965421111 1134444443311 2345799999999987543
No 181
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=49.31 E-value=85 Score=23.33 Aligned_cols=76 Identities=14% Similarity=0.238 Sum_probs=43.9
Q ss_pred CCCChHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHH-HHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHH
Q psy7436 146 GTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAE-LRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224 (243)
Q Consensus 146 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e-~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ 224 (243)
|+|+.+.+...+....... .+. ..++.-.+++||..+ |.+++..++.++ ++.+.-+.+.+..+. .++
T Consensus 12 GTITl~Ds~~~itdtf~~~----e~k---~l~~~vls~tiS~rd~~g~mf~~i~~s~-~Eile~llk~i~Idp----~fK 79 (220)
T COG4359 12 GTITLNDSNDYITDTFGPG----EWK---ALKDGVLSKTISFRDGFGRMFGSIHSSL-EEILEFLLKDIKIDP----GFK 79 (220)
T ss_pred CceEecchhHHHHhccCch----HHH---HHHHHHhhCceeHHHHHHHHHHhcCCCH-HHHHHHHHhhcccCc----cHH
Confidence 3455557776666554432 222 333444667787655 778888877544 444444555454443 478
Q ss_pred HHHHHHHHh
Q psy7436 225 VYTIYCVHI 233 (243)
Q Consensus 225 eF~~~~~~~ 233 (243)
||+.|+...
T Consensus 80 ef~e~ike~ 88 (220)
T COG4359 80 EFVEWIKEH 88 (220)
T ss_pred HHHHHHHHc
Confidence 888887754
No 182
>KOG3077|consensus
Probab=48.98 E-value=1.3e+02 Score=23.63 Aligned_cols=76 Identities=20% Similarity=0.230 Sum_probs=50.5
Q ss_pred hhhhhhc-C--CCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhh
Q psy7436 3 EEYGSLL-D--GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARK 79 (243)
Q Consensus 3 ~~~f~~f-d--~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~ 79 (243)
...|..+ | .+..|-++-+.+....+|+.+.+..+.-+-=.+... .-+..+.+||+..+...
T Consensus 67 ~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~----------------~m~~Fsr~ef~~g~~~l 130 (260)
T KOG3077|consen 67 EELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAA----------------TMCEFSREEFLKGMTAL 130 (260)
T ss_pred HHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccc----------------hhhhhhHHHHHHHHHHc
Confidence 3455555 3 335889999999999999877766655544445544 67889999999988655
Q ss_pred cCCcccHHHHHHHHHhh
Q psy7436 80 MKDTDSEEEIREAFRVF 96 (243)
Q Consensus 80 ~~~~~~~~~l~~~f~~~ 96 (243)
.. +..+.++..+...
T Consensus 131 ~~--dS~d~lq~~l~~l 145 (260)
T KOG3077|consen 131 GC--DSIDKLQQRLDFL 145 (260)
T ss_pred CC--CcHHHHHHHHHHH
Confidence 43 4455555555444
No 183
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=48.53 E-value=51 Score=19.61 Aligned_cols=32 Identities=25% Similarity=0.498 Sum_probs=27.5
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy7436 182 NGFISAAELRHVMTNLGEKLTDEEVDEMIREA 213 (243)
Q Consensus 182 ~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 213 (243)
+-.|+.+-++.++..+|-..|+..++.++..+
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44688899999999999999999999888776
No 184
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=48.50 E-value=1.1e+02 Score=22.61 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=30.3
Q ss_pred hcCCCCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHHhCcC
Q psy7436 96 FDKDGNGFISAAELRHVMTNL--GEKLTDEEVDEMIREADID 135 (243)
Q Consensus 96 ~D~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~l~~~~~~~ 135 (243)
+.++....++.++|.+.++.. +..++.+.+..++..+..+
T Consensus 144 hn~~~k~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~~~ 185 (187)
T smart00222 144 HNPNVKKKMTLEDFIKNVRGSNDGEDLPREFLEELYDSIKNN 185 (187)
T ss_pred cCCccCCCCCHHHHHHHHhccCCCCCCCHHHHHHHHHHHHhC
Confidence 344455689999999998876 4678889988888776543
No 185
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=48.22 E-value=62 Score=19.72 Aligned_cols=23 Identities=13% Similarity=0.367 Sum_probs=11.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHh
Q psy7436 20 LGTVMRSLGQNPTEAELQDMINE 42 (243)
Q Consensus 20 f~~~l~~l~~~l~~~~~~~~~~~ 42 (243)
++.+|+.++-.-+.+++++-|..
T Consensus 2 LK~ii~~Lh~G~~~e~vk~~F~~ 24 (71)
T PF04282_consen 2 LKEIIKRLHEGEDPEEVKEEFKK 24 (71)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHH
Confidence 34555555544455555554443
No 186
>PLN02230 phosphoinositide phospholipase C 4
Probab=47.20 E-value=1.3e+02 Score=26.94 Aligned_cols=74 Identities=14% Similarity=0.273 Sum_probs=49.3
Q ss_pred ccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC---CCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHh
Q psy7436 84 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGE---KLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159 (243)
Q Consensus 84 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~ 159 (243)
....++..+|..+..+ ++.++.++|..+|..... ..+...+..++..+...... +.....+.++++.|..++..
T Consensus 26 ~p~~ei~~lf~~~s~~-~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 26 GPVADVRDLFEKYADG-DAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHH-IAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCcHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccc-cccccccccCHHHHHHHHcC
Confidence 4567899999999544 489999999999998752 23566677777654322110 00112335889999998766
No 187
>KOG2871|consensus
Probab=47.02 E-value=31 Score=28.40 Aligned_cols=45 Identities=29% Similarity=0.535 Sum_probs=36.1
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy7436 85 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129 (243)
Q Consensus 85 ~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~ 129 (243)
....+++.|..+|+..+|.|+.+-++..+...+..+++...-.++
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~ 351 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLM 351 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHh
Confidence 357799999999999999999999999999888556655444443
No 188
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=46.93 E-value=29 Score=20.41 Aligned_cols=26 Identities=8% Similarity=0.314 Sum_probs=20.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHH
Q psy7436 184 FISAAELRHVMTNLGEKLTDEEVDEM 209 (243)
Q Consensus 184 ~i~~~e~~~~l~~~~~~~~~~~~~~~ 209 (243)
.|+.++|..+|+.....++.+++...
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 48889999999988888888887654
No 189
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=44.93 E-value=31 Score=15.38 Aligned_cols=12 Identities=33% Similarity=0.692 Sum_probs=5.5
Q ss_pred CCCCCcccHHHH
Q psy7436 179 KDGNGFISAAEL 190 (243)
Q Consensus 179 ~~~~G~i~~~e~ 190 (243)
.+++|.|+.-++
T Consensus 2 vN~DG~vna~D~ 13 (21)
T PF00404_consen 2 VNGDGKVNAIDL 13 (21)
T ss_dssp TTSSSSSSHHHH
T ss_pred CCCCCcCCHHHH
Confidence 344454444443
No 190
>KOG1954|consensus
Probab=44.02 E-value=52 Score=27.40 Aligned_cols=56 Identities=27% Similarity=0.415 Sum_probs=44.6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q psy7436 170 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTI 228 (243)
Q Consensus 170 ~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 228 (243)
..++|..+. .-+|+|+...-...+-.. .++...+-.+++..|.|.||.++=+||.-
T Consensus 446 yde~fy~l~-p~~gk~sg~~ak~~mv~s--klpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTLS-PVNGKLSGRNAKKEMVKS--KLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhccc-ccCceeccchhHHHHHhc--cCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 677888874 457888877766655443 47889999999999999999999999963
No 191
>KOG4070|consensus
Probab=44.02 E-value=83 Score=22.35 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhC-----CCCCHHHHHHHHHhcC
Q psy7436 169 EIREAFRVFDKDGNGFISAAELRHVMTNLG-----EKLTDEEVDEMIREAD 214 (243)
Q Consensus 169 ~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d 214 (243)
....+|..+--..-+.++.++|+.+|..++ -...++.+..+.+.+.
T Consensus 58 dt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~k~Ks~ee~l~~I~~lla 108 (180)
T KOG4070|consen 58 DTDIVFSKVKGKKARTITFEEFKKALEELATKRFKGKSKEEALDAICQLLA 108 (180)
T ss_pred ccceeeeeccccccccccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHh
Confidence 344567666666677889999988888775 1234555666555543
No 192
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=43.66 E-value=68 Score=18.92 Aligned_cols=13 Identities=8% Similarity=0.204 Sum_probs=4.0
Q ss_pred CCCHHHHHHHHHh
Q psy7436 30 NPTEAELQDMINE 42 (243)
Q Consensus 30 ~l~~~~~~~~~~~ 42 (243)
+|+.+++..++..
T Consensus 14 ~Ls~~e~~~~~~~ 26 (66)
T PF02885_consen 14 DLSREEAKAAFDA 26 (66)
T ss_dssp ---HHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3444444444333
No 193
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=43.39 E-value=52 Score=24.20 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=30.3
Q ss_pred CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccc
Q psy7436 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDA 45 (243)
Q Consensus 10 d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~ 45 (243)
|.+|+++.+++-+.++.-+..++.+++.++...-++
T Consensus 29 d~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K 64 (179)
T PRK00819 29 DEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDK 64 (179)
T ss_pred CCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCC
Confidence 899999999999999866667899999988876443
No 194
>KOG0506|consensus
Probab=43.05 E-value=48 Score=28.36 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=47.3
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHh
Q psy7436 90 REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159 (243)
Q Consensus 90 ~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~ 159 (243)
..+|..+...+++.++.-.|..+|++.|..-+++-+..++..+..-.-...+-+....++-+.|.+++..
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 3478888777789999999999999999988888887777655221100000012334677778777654
No 195
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=42.94 E-value=41 Score=24.90 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=25.7
Q ss_pred CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccc
Q psy7436 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDA 45 (243)
Q Consensus 10 d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~ 45 (243)
|.+|+++.+++-+.+..-+..++.+++.+++..-+.
T Consensus 28 d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 28 DPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp -TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred CCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 899999999999999987777899999999887554
No 196
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=42.37 E-value=97 Score=20.28 Aligned_cols=64 Identities=14% Similarity=0.268 Sum_probs=39.1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCC---CCCCcccHHHHHHHHHHhhcc
Q psy7436 168 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADI---DGDGQVNYEVYTIYCVHIMGN 236 (243)
Q Consensus 168 ~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~---~~~g~i~~~eF~~~~~~~~~~ 236 (243)
..+..-|..+-. +|.|+++.|... +|..-+.+-+.++|..+.. -..+.|+.+|+..++.++-..
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~C---IGM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qisD~ 96 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGEC---IGMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQISDQ 96 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHH---HT--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHh---cCCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhhcc
Confidence 445666777755 899999999876 4655455556666655522 224589999999888876543
No 197
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=41.44 E-value=1.4e+02 Score=21.73 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC
Q psy7436 84 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGE 118 (243)
Q Consensus 84 ~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~ 118 (243)
+-++++-.+|..+-. +.+-+..+++..++..+..
T Consensus 11 EiEDEILe~Ya~~~~-~~~D~~l~~Lp~~f~~L~I 44 (170)
T PF08730_consen 11 EIEDEILEAYAEYTE-DEQDMTLKDLPNYFEDLQI 44 (170)
T ss_pred HHHHHHHHHHHHhcC-CccceeHHHHHHHHHHcCC
Confidence 445667777777743 3678888999999888764
No 198
>PRK00523 hypothetical protein; Provisional
Probab=41.32 E-value=72 Score=19.44 Aligned_cols=32 Identities=19% Similarity=0.428 Sum_probs=27.7
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy7436 182 NGFISAAELRHVMTNLGEKLTDEEVDEMIREA 213 (243)
Q Consensus 182 ~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 213 (243)
+-.|+.+-++.++..+|-..|+..++.+++.+
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45688888999999999999999999988877
No 199
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=38.90 E-value=51 Score=16.58 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=16.4
Q ss_pred CCcCHHHHHHHHHHcCCCCC
Q psy7436 13 GTITTKELGTVMRSLGQNPT 32 (243)
Q Consensus 13 g~i~~~ef~~~l~~l~~~l~ 32 (243)
+.++..+++..++..|++.+
T Consensus 2 ~~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 2 AKLKVSELKDELKKRGLSTS 21 (35)
T ss_pred CcCcHHHHHHHHHHcCCCCC
Confidence 36789999999999988654
No 200
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=38.85 E-value=75 Score=19.24 Aligned_cols=46 Identities=22% Similarity=0.398 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHhc
Q psy7436 168 EEIREAFRVFDKDGNGFISAAELRHVMTNL----GEKLTDEEVDEMIREA 213 (243)
Q Consensus 168 ~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~ 213 (243)
..+..+....+....--+-..+++.++..+ |...+++.++.+|+.|
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 455666666655544556677888887766 6677888899999876
No 201
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=38.68 E-value=2e+02 Score=22.76 Aligned_cols=97 Identities=15% Similarity=0.235 Sum_probs=53.9
Q ss_pred CCCCcccHHHHHHHHHHh--CCCCCHHH---HHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCCCCcHHHH---
Q psy7436 99 DGNGFISAAELRHVMTNL--GEKLTDEE---VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEI--- 170 (243)
Q Consensus 99 ~~~g~i~~~e~~~~l~~~--~~~~~~~~---~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~--- 170 (243)
.-||.|+..|+. ..+.+ ...++++. +..+|..-... ..++.+|+..+...+... .+.+
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~-----------~~~l~~~~~~~~~~~~~r--~~l~~~l 132 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEP-----------DFPLREKLRQFRSVCGGR--FDLLRMF 132 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhccc-----------CCCHHHHHHHHHHHhccc--HHHHHHH
Confidence 448899999997 33332 23466766 44455443222 157888888887765322 1222
Q ss_pred -HHHHHhhcCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHh
Q psy7436 171 -REAFRVFDKDGNGFISAAELRHVMTNLG--EKLTDEEVDEMIRE 212 (243)
Q Consensus 171 -~~~f~~~D~~~~G~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~ 212 (243)
...|..- -.||.++..|-. +|+.++ ..++..++..+...
T Consensus 133 L~~l~~vA--~ADG~l~~~E~~-~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 133 LEIQIQAA--FADGSLHPNERQ-VLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred HHHHHHHH--HhcCCCCHHHHH-HHHHHHHHcCCCHHHHHHHHHH
Confidence 3333332 246888888833 333321 34677776666554
No 202
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=38.48 E-value=53 Score=22.59 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=20.6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHh
Q psy7436 170 IREAFRVFDKDGNGFISAAELRHVMTNL 197 (243)
Q Consensus 170 ~~~~f~~~D~~~~G~i~~~e~~~~l~~~ 197 (243)
+..++..||..++|.|+.-.|+.+|..+
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 4457889999999999999999887653
No 203
>KOG4004|consensus
Probab=38.18 E-value=14 Score=27.38 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=33.9
Q ss_pred CCCccchHHHHHHHHhhcCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q psy7436 63 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVM 113 (243)
Q Consensus 63 ~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l 113 (243)
-+|.+|-.|.+.+-... -+.+.=+...|...|.|++|.|+.+|+..++
T Consensus 201 ~d~~~sh~el~pl~ap~---ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 201 IDGYLSHTELAPLRAPL---IPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred ccccccccccccccCCc---ccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 36777777766543222 2334456778899999999999999988775
No 204
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=37.75 E-value=69 Score=17.28 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=21.3
Q ss_pred HHHHHHHHhhc-C-CCCCcccHHHHHHHHHHh
Q psy7436 168 EEIREAFRVFD-K-DGNGFISAAELRHVMTNL 197 (243)
Q Consensus 168 ~~~~~~f~~~D-~-~~~G~i~~~e~~~~l~~~ 197 (243)
..+..+|..|- . ....+++..||+.++..-
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~E 37 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEKE 37 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHHH
Confidence 34567788774 2 345689999999998764
No 205
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=37.39 E-value=1.3e+02 Score=20.26 Aligned_cols=52 Identities=13% Similarity=0.249 Sum_probs=40.0
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q psy7436 172 EAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTI 228 (243)
Q Consensus 172 ~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 228 (243)
.+|-..-.-++..+|.+++..+|+..|..+.+..+..+++.+. ..+..|.+.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 3455555666777999999999999999999999999998885 234555553
No 206
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=36.30 E-value=98 Score=18.76 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=22.4
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q psy7436 184 FISAAELRHVMTNLGEKLTDEEVDEMIREAD 214 (243)
Q Consensus 184 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 214 (243)
.-+.+|+...|...|+.++..-+.+-++.+.
T Consensus 19 i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp --SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 4689999999999999999888888777664
No 207
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=35.74 E-value=58 Score=22.79 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=34.3
Q ss_pred CCCCcCHHHHHHHHHHc---------CCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCC-ccchHHHHHH
Q psy7436 11 GDGTITTKELGTVMRSL---------GQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNG-TIDFPEFLTM 75 (243)
Q Consensus 11 ~~g~i~~~ef~~~l~~l---------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~i~~~ef~~~ 75 (243)
++-.||.+||.+.++.- .+.+..+++.++...+... +.+ .++..|-++.
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~----------------~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKA----------------PKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhc----------------cccCCCCHHHHHHH
Confidence 67788888888888763 2345778888887777665 444 4888876654
No 208
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.40 E-value=1e+02 Score=18.63 Aligned_cols=33 Identities=21% Similarity=0.453 Sum_probs=26.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q psy7436 182 NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 214 (243)
Q Consensus 182 ~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 214 (243)
+-.|+.+-++.++..+|...|+..++.+++.+-
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 446888888888888998889999988887653
No 209
>KOG3449|consensus
Probab=35.26 E-value=1.4e+02 Score=19.96 Aligned_cols=52 Identities=21% Similarity=0.432 Sum_probs=41.8
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHH
Q psy7436 172 EAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTI 228 (243)
Q Consensus 172 ~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~ 228 (243)
.+|-..+.-++-..+..++..+|...|....++.++.++..+. |+ +.+|.+.
T Consensus 5 aAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 5 AAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 4666777778888999999999999999999999999999884 33 4555543
No 210
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=35.12 E-value=55 Score=19.49 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=28.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q psy7436 181 GNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 216 (243)
Q Consensus 181 ~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 216 (243)
.++.++..++...|...|..+++..+...++.++.+
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~ 45 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERD 45 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHC
Confidence 456788888888888888888888888888888644
No 211
>PLN02223 phosphoinositide phospholipase C
Probab=35.04 E-value=1.2e+02 Score=26.60 Aligned_cols=69 Identities=7% Similarity=0.083 Sum_probs=44.5
Q ss_pred hhhhhhhc-CCCCCcCHHHHHHHHHHc---C--CCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHH
Q psy7436 2 IEEYGSLL-DGDGTITTKELGTVMRSL---G--QNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTM 75 (243)
Q Consensus 2 ~~~~f~~f-d~~g~i~~~ef~~~l~~l---~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~ 75 (243)
++.+|..+ .++|.++.+.+.++|.-| . ...+.++.+.++..+...... .......+.++.+.|..+
T Consensus 18 v~~~f~~~~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~--------~~~~~~~~~l~~~~f~~~ 89 (537)
T PLN02223 18 ILNFFGNEFHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCD--------ILAFRNLRCLELDHLNEF 89 (537)
T ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhccc--------chhhhhccccCHHHHHHH
Confidence 46677777 889999999999999433 2 235666777777664432100 000003366999999988
Q ss_pred HHh
Q psy7436 76 MAR 78 (243)
Q Consensus 76 ~~~ 78 (243)
+..
T Consensus 90 L~s 92 (537)
T PLN02223 90 LFS 92 (537)
T ss_pred hcC
Confidence 864
No 212
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=33.85 E-value=50 Score=16.71 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.3
Q ss_pred CcCHHHHHHHHHHcCCCCC
Q psy7436 14 TITTKELGTVMRSLGQNPT 32 (243)
Q Consensus 14 ~i~~~ef~~~l~~l~~~l~ 32 (243)
.++..|++..++..|++.+
T Consensus 3 ~l~v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHTTS-ST
T ss_pred cCcHHHHHHHHHHCCCCCC
Confidence 5788999999999988654
No 213
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=33.81 E-value=2e+02 Score=21.30 Aligned_cols=39 Identities=5% Similarity=0.205 Sum_probs=23.3
Q ss_pred hhcCCCCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHHhC
Q psy7436 95 VFDKDGNGFISAAELRHVMTNL--GEKLTDEEVDEMIREAD 133 (243)
Q Consensus 95 ~~D~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~l~~~~~ 133 (243)
.+.++-...++.++|.+..+.+ +..++.+.+..++..+.
T Consensus 146 lHn~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 186 (190)
T PF01369_consen 146 LHNPNIKKKMTKEDFIKNTRGIDDGKDIPEEFLESIYDSIK 186 (190)
T ss_dssp HH-TTSSSS--HHHHHHHTTTTBTTBS--HHHHHHHHHHHH
T ss_pred HHhhccccCCcHHHHHHHhhcccCCCCCCHHHHHHHHHHHH
Confidence 3344444678999998888764 45677788877776654
No 214
>KOG0506|consensus
Probab=33.48 E-value=1.1e+02 Score=26.26 Aligned_cols=61 Identities=11% Similarity=0.207 Sum_probs=45.9
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc---C----CC-CCCcccHHHHHHHHH
Q psy7436 171 REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA---D----ID-GDGQVNYEVYTIYCV 231 (243)
Q Consensus 171 ~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---d----~~-~~g~i~~~eF~~~~~ 231 (243)
.-+|..+-...++.++.--|..+|+..|..-++..+..+++.+ + .. +.+.++.+-|.+|+.
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 3467777555679999999999999999888887777776655 3 12 234688888888765
No 215
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=33.42 E-value=79 Score=18.69 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=17.0
Q ss_pred ccHHHHHHHHH-HhCCCCCHHHHHHHHHhcCCCC
Q psy7436 185 ISAAELRHVMT-NLGEKLTDEEVDEMIREADIDG 217 (243)
Q Consensus 185 i~~~e~~~~l~-~~~~~~~~~~~~~~~~~~d~~~ 217 (243)
++.+++.+.+. .....++.+++..-.+.++.|.
T Consensus 4 ~~~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N~ 37 (69)
T PF00690_consen 4 LSVEEVLKRLNTSSSQGLSSEEVEERRKKYGPNE 37 (69)
T ss_dssp SSHHHHHHHHTTBTSSBBTHHHHHHHHHHHSSSS
T ss_pred CCHHHHHHHHCcCCCCCCCHHHHHHHHHhccccc
Confidence 34445555554 3333455666666666665554
No 216
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=33.32 E-value=67 Score=19.66 Aligned_cols=16 Identities=13% Similarity=0.518 Sum_probs=13.9
Q ss_pred CCCCcCHHHHHHHHHH
Q psy7436 11 GDGTITTKELGTVMRS 26 (243)
Q Consensus 11 ~~g~i~~~ef~~~l~~ 26 (243)
..|++.-+||.+++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 6799999999999875
No 217
>PRK01844 hypothetical protein; Provisional
Probab=33.13 E-value=1.1e+02 Score=18.63 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=27.5
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy7436 182 NGFISAAELRHVMTNLGEKLTDEEVDEMIREA 213 (243)
Q Consensus 182 ~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 213 (243)
+-.|+.+-++.++..+|-..|+..++.+++.+
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44688888999999999999999999988877
No 218
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=32.47 E-value=48 Score=20.66 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=18.1
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCc
Q psy7436 100 GNGFISAAELRHVMTNLGEKLTDEEVDEMIREADI 134 (243)
Q Consensus 100 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~ 134 (243)
..|.||+.++..+|.... ++++.+..++..+..
T Consensus 18 ~~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 18 KKGYLTYDEINDALPEDD--LDPEQIDEIYDTLED 50 (82)
T ss_dssp HHSS-BHHHHHHH-S-S-----HHHHHHHHHHHHT
T ss_pred hcCcCCHHHHHHHcCccC--CCHHHHHHHHHHHHH
Confidence 357777777777776433 666777777666543
No 219
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.33 E-value=92 Score=17.08 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=22.6
Q ss_pred CCCccc-HHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy7436 181 GNGFIS-AAELRHVMTNLGEKLTDEEVDEMIREA 213 (243)
Q Consensus 181 ~~G~i~-~~e~~~~l~~~~~~~~~~~~~~~~~~~ 213 (243)
+.|.|+ ..++...|...|+.++++.++.+++..
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 356665 444555556668889999888887764
No 220
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=32.25 E-value=1.5e+02 Score=19.36 Aligned_cols=78 Identities=9% Similarity=0.197 Sum_probs=48.6
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCC
Q psy7436 102 GFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 181 (243)
Q Consensus 102 g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~ 181 (243)
..|+..+++++.+.+| +++..++.+-.....+ ..+.-...+..+. +.. ..
T Consensus 16 ~~~~~~~wK~faR~lg--lse~~Id~I~~~~~~d-------------~~Eq~~qmL~~W~-------------~~~--G~ 65 (97)
T cd08316 16 DVMTLKDVKKFVRKSG--LSEPKIDEIKLDNPQD-------------TAEQKVQLLRAWY-------------QSH--GK 65 (97)
T ss_pred HHcCHHHHHHHHHHcC--CCHHHHHHHHHcCCCC-------------hHHHHHHHHHHHH-------------HHh--CC
Confidence 3677888888888888 7888888887665443 2334444433331 111 11
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy7436 182 NGFISAAELRHVMTNLGEKLTDEEVDEMIR 211 (243)
Q Consensus 182 ~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 211 (243)
. =+...+..+|+.++.....+.+..++.
T Consensus 66 ~--a~~~~Li~aLr~~~l~~~Ad~I~~~l~ 93 (97)
T cd08316 66 T--GAYRTLIKTLRKAKLCTKADKIQDIIE 93 (97)
T ss_pred C--chHHHHHHHHHHccchhHHHHHHHHHH
Confidence 2 235778888888887766666666554
No 221
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=32.01 E-value=1.1e+02 Score=25.08 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=28.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHH
Q psy7436 181 GNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIY 229 (243)
Q Consensus 181 ~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~ 229 (243)
+.|.||++|-...++......+++.++.+++.++ ||-+||.+.
T Consensus 299 R~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~ 341 (343)
T TIGR03573 299 RSGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKT 341 (343)
T ss_pred HcCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHH
Confidence 4677888887777777544555677777777775 444555543
No 222
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=31.72 E-value=54 Score=16.81 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=11.6
Q ss_pred CcCHHHHHHHHHHcCCCCC
Q psy7436 14 TITTKELGTVMRSLGQNPT 32 (243)
Q Consensus 14 ~i~~~ef~~~l~~l~~~l~ 32 (243)
.++..+++.+|...|+..+
T Consensus 3 sltV~~Lk~iL~~~~I~~p 21 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIEFP 21 (35)
T ss_dssp T--SHHHHHHHHHHT---S
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4678899999999887653
No 223
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=31.32 E-value=1.4e+02 Score=18.95 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=34.9
Q ss_pred ccchHHHHHHHHhhcCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Q psy7436 66 TIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 128 (243)
Q Consensus 66 ~i~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l 128 (243)
.+++.+++.+= ....++...+-..+...+- =|+.+..+|...|+.++ ++.+++...
T Consensus 30 ~it~~dL~~~G--L~g~~~s~~rR~~l~~~L~---iGy~N~KqllkrLN~f~--it~~e~~~a 85 (87)
T PF13331_consen 30 EITWEDLIELG--LIGGPDSKERREKLGEYLG---IGYGNAKQLLKRLNMFG--ITREEFEEA 85 (87)
T ss_pred cCCHHHHHHCC--CCCCccHHHHHHHHHHHHC---CCCCCHHHHHHHHHHcC--CCHHHHHHH
Confidence 58888877642 1222233333344445553 38999999999998887 666666554
No 224
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=30.88 E-value=87 Score=19.99 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=25.1
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHhccc
Q psy7436 15 ITTKELGTVMRSLGQNPTEAELQDMINEVDA 45 (243)
Q Consensus 15 i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~ 45 (243)
||.++++.+.+...+.++++++.++...+..
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l~~ 31 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDLDK 31 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 5788899988888889999998887776543
No 225
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=30.60 E-value=1.4e+02 Score=18.78 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=14.3
Q ss_pred CCCCCcCHHHHHHHHHHc
Q psy7436 10 DGDGTITTKELGTVMRSL 27 (243)
Q Consensus 10 d~~g~i~~~ef~~~l~~l 27 (243)
--||.++.+|...+...+
T Consensus 11 ~aDG~i~~~E~~~i~~~~ 28 (104)
T cd07177 11 KADGRVDEEEIAAIEALL 28 (104)
T ss_pred HhcCCCCHHHHHHHHHHH
Confidence 348999999988887665
No 226
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=29.71 E-value=1.4e+02 Score=18.52 Aligned_cols=45 Identities=20% Similarity=0.365 Sum_probs=33.4
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHH
Q psy7436 15 ITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMM 76 (243)
Q Consensus 15 i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~ 76 (243)
-+.+++...|. |+..+.+.+.+.+...+... -=+.++.+|++.++
T Consensus 42 ~~i~~le~~L~--G~~~~~~~i~~~l~~~~~~~---------------~~~~~~~~el~~~l 86 (86)
T PF10437_consen 42 EDIEELEEALI--GCPYDREAIKEALNSVDLED---------------YFGNISVEELIELL 86 (86)
T ss_dssp CCHHHHHHHHT--TCBSSHHHHHHHHHHCHGGG---------------TCCTHHHHHHHHHH
T ss_pred hHHHHHHHHHH--hcCCCHHHHHHHHHHhCHhh---------------ccccCCHHHHHHhC
Confidence 34788888885 88999999999999885431 23468888887754
No 227
>PRK10945 gene expression modulator; Provisional
Probab=29.58 E-value=91 Score=18.97 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHhcccc
Q psy7436 16 TTKELGTVMRSLGQNPTEAELQDMINEVDAD 46 (243)
Q Consensus 16 ~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~ 46 (243)
+.+-+..++......++..|+..+....|..
T Consensus 20 s~eTLEkvie~~~~~L~~~E~~~f~~AaDHR 50 (72)
T PRK10945 20 TIDTLERVIEKNKYELSDDELAVFYSAADHR 50 (72)
T ss_pred cHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 3444555555555556666666655555554
No 228
>KOG4403|consensus
Probab=29.55 E-value=2.5e+02 Score=23.90 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=37.4
Q ss_pred hhhhhhhhhhccCCCccchHHHHHHHHhhcCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy7436 51 SNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTN 115 (243)
Q Consensus 51 ~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~ 115 (243)
+++.+.+..|-+.+|.|+.+|=-.++..-+.-.....+-...|.. .+..|+.++++.+...
T Consensus 69 Air~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD~~ItVedLWeaW~~ 129 (575)
T KOG4403|consen 69 AIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DDKHITVEDLWEAWKE 129 (575)
T ss_pred HHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----CccceeHHHHHHHHHh
Confidence 333344444444999999988766666554434444443444543 3568999999887654
No 229
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=29.31 E-value=1.8e+02 Score=19.39 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=32.0
Q ss_pred CCCCCChHHHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh---C-CCCCHHHHHHHHHhcCCC
Q psy7436 144 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL---G-EKLTDEEVDEMIREADID 216 (243)
Q Consensus 144 ~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~---~-~~~~~~~~~~~~~~~d~~ 216 (243)
.+..|++++....+..- .-|+..|.....-||..=+.+++-.. | .-++..-+..++..++..
T Consensus 16 tS~YITLedi~~lV~~g-----------~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg~~ 81 (107)
T TIGR01848 16 TSSYVTLEDIRDLVREG-----------REFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYGGS 81 (107)
T ss_pred ccceeeHHHHHHHHHCC-----------CeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhChh
Confidence 34455555555555443 23555555544456655555555432 1 235566666666666543
No 230
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=29.18 E-value=68 Score=16.00 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=10.0
Q ss_pred CCcccHHHHHHHHHHh
Q psy7436 182 NGFISAAELRHVMTNL 197 (243)
Q Consensus 182 ~G~i~~~e~~~~l~~~ 197 (243)
.|.|+.+|+..+.+..
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 4667777776666543
No 231
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=29.05 E-value=1.5e+02 Score=18.34 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=19.8
Q ss_pred CcCHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy7436 14 TITTKELGTVMRSLGQNPTEAELQDMIN 41 (243)
Q Consensus 14 ~i~~~ef~~~l~~l~~~l~~~~~~~~~~ 41 (243)
.++..+.+.+.+.|| +++.+|..+-.
T Consensus 8 ~v~~~~Wk~laR~LG--ls~~~I~~ie~ 33 (79)
T cd08784 8 EVPFDQHKRFFRKLG--LSDNEIKVAEL 33 (79)
T ss_pred HCCHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 467888899999887 47777777554
No 232
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=28.93 E-value=1.2e+02 Score=22.55 Aligned_cols=37 Identities=24% Similarity=0.436 Sum_probs=23.4
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q psy7436 178 DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 214 (243)
Q Consensus 178 D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 214 (243)
..+.+|+++.+++.+.+..-+..++.+++.++...-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 4678899999999888888777788888888887654
No 233
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=28.79 E-value=96 Score=18.43 Aligned_cols=22 Identities=14% Similarity=0.590 Sum_probs=18.0
Q ss_pred HhhcCCCCCcccHHHHHHHHHH
Q psy7436 175 RVFDKDGNGFISAAELRHVMTN 196 (243)
Q Consensus 175 ~~~D~~~~G~i~~~e~~~~l~~ 196 (243)
+.+|+..+.+|+.+++.++.+.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 3578888899999999888865
No 234
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=28.28 E-value=1.1e+02 Score=19.62 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=26.4
Q ss_pred CcCHHHHHHHHHHcCCCCCHHHHHHHHHhccc
Q psy7436 14 TITTKELGTVMRSLGQNPTEAELQDMINEVDA 45 (243)
Q Consensus 14 ~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~ 45 (243)
.|+.++++.+.+...+.+++++...+...+..
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~~l~~ 33 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAGQLNK 33 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 47899999999988999999998887766543
No 235
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=28.16 E-value=73 Score=15.62 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=11.8
Q ss_pred CCCCcCHHHHHHHHHH
Q psy7436 11 GDGTITTKELGTVMRS 26 (243)
Q Consensus 11 ~~g~i~~~ef~~~l~~ 26 (243)
..|.||.+||.+.-+.
T Consensus 13 ~~G~IseeEy~~~k~~ 28 (31)
T PF09851_consen 13 DKGEISEEEYEQKKAR 28 (31)
T ss_pred HcCCCCHHHHHHHHHH
Confidence 5788888888876554
No 236
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=27.93 E-value=1.9e+02 Score=19.32 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=42.6
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q psy7436 172 EAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVH 232 (243)
Q Consensus 172 ~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~ 232 (243)
.+|-..-..++..+|.+++..+|+..|..+.+..+..+++.+. ..+..+.+..-..
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~-----GKdi~eLIa~g~~ 60 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE-----GKDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHHHhHh
Confidence 3455555667778999999999999999999999999998885 2456666654443
No 237
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=27.73 E-value=2.6e+02 Score=20.89 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=50.5
Q ss_pred CCCccchHHHHHHHHhhcCCcccHHHHHHHHHhhcCCCCCcccHH-HHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccc
Q psy7436 63 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAA-ELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 141 (243)
Q Consensus 63 ~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~-e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~ 141 (243)
=+|.|+..++...+......+. +..++... -++.|+.. -|..++..++.++ ++.++.+......++
T Consensus 10 FDGTITl~Ds~~~itdtf~~~e----~k~l~~~v---ls~tiS~rd~~g~mf~~i~~s~-~Eile~llk~i~Idp----- 76 (220)
T COG4359 10 FDGTITLNDSNDYITDTFGPGE----WKALKDGV---LSKTISFRDGFGRMFGSIHSSL-EEILEFLLKDIKIDP----- 76 (220)
T ss_pred CCCceEecchhHHHHhccCchH----HHHHHHHH---hhCceeHHHHHHHHHHhcCCCH-HHHHHHHHhhcccCc-----
Confidence 5789999999998876655442 33344333 24567655 4567777777555 555566666565553
Q ss_pred cCCCCCCChHHHHHHHHhh
Q psy7436 142 YEGNGTIDFPEFLTMMARK 160 (243)
Q Consensus 142 ~~~~~~i~~~ef~~~~~~~ 160 (243)
.|.+|..++...
T Consensus 77 -------~fKef~e~ike~ 88 (220)
T COG4359 77 -------GFKEFVEWIKEH 88 (220)
T ss_pred -------cHHHHHHHHHHc
Confidence 677888888764
No 238
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.54 E-value=2.3e+02 Score=20.05 Aligned_cols=93 Identities=20% Similarity=0.327 Sum_probs=54.8
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCCCCcHH
Q psy7436 91 EAFRVFDKDGNGFISAAELRHVMTNL--GEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEE 168 (243)
Q Consensus 91 ~~f~~~D~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~~~~~~ 168 (243)
.+|.... -+|.++..|...+..-+ .+.++...+..+......-+ ...+++-.|...+..........+
T Consensus 34 Llf~Vm~--ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~--------~Ea~d~y~fts~l~r~Ld~e~R~e 103 (148)
T COG4103 34 LLFHVME--ADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAG--------YEAIDLYSFTSVLKRHLDEEQRLE 103 (148)
T ss_pred HHHHHHh--cccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4566664 46788888876654332 45688999988887665432 223566677777765443332223
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHH
Q psy7436 169 EIREAFRVFDKDGNGFISAAELRHVMT 195 (243)
Q Consensus 169 ~~~~~f~~~D~~~~G~i~~~e~~~~l~ 195 (243)
-+...++.. ..+|.++..|-.-+.+
T Consensus 104 li~~mweIa--~ADg~l~e~Ed~vi~R 128 (148)
T COG4103 104 LIGLMWEIA--YADGELDESEDHVIWR 128 (148)
T ss_pred HHHHHHHHH--HccccccHHHHHHHHH
Confidence 344444443 4567777777544433
No 239
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=27.09 E-value=1.5e+02 Score=21.76 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=19.8
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy7436 179 KDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 213 (243)
Q Consensus 179 ~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 213 (243)
.+.+|.++.+++...++.-+..++.+++.++...-
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d 62 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESD 62 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcC
Confidence 45566666666666665434445666655555443
No 240
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=26.89 E-value=1.3e+02 Score=24.34 Aligned_cols=87 Identities=31% Similarity=0.407 Sum_probs=48.6
Q ss_pred HHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcCCcccHHHHHHHH-----HhhcC
Q psy7436 24 MRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREAF-----RVFDK 98 (243)
Q Consensus 24 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~f-----~~~D~ 98 (243)
+..+++++.++|+++++..+..+++ ....+-=++|...+... .+ +.+..| +..-.
T Consensus 25 m~~~d~s~~~~e~~A~l~E~r~DyN--------------r~HF~R~~ef~~~~~~l--~~----e~r~~FidFLerScTa 84 (337)
T TIGR02029 25 MANLDVSPVENEWDAMLAEMKADYN--------------RHHFVRNEEFDQSWEHI--DG----ELRQAFIEFLERSCTS 84 (337)
T ss_pred HHhcCCchhHHHHHHHHHHHHhCcc--------------ccccccChhhhcchhhC--CH----HHHHHHHHHHHHHhhh
Confidence 4667888889999999999888753 44455555665544321 11 122233 22222
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcC
Q psy7436 99 DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 135 (243)
Q Consensus 99 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~ 135 (243)
.=+|.+=+.|+.+-++. ..+.+.++|..+..|
T Consensus 85 EFSGflLYKEl~rrlk~-----~~P~lae~F~~MaRD 116 (337)
T TIGR02029 85 EFSGFLLYKELSRRLKN-----RDPVVAELFQLMARD 116 (337)
T ss_pred hhhhhHHHHHHHHhcCC-----CChHHHHHHHHHhhh
Confidence 33566666666655433 334455555555444
No 241
>KOG1785|consensus
Probab=26.58 E-value=3.9e+02 Score=22.54 Aligned_cols=85 Identities=9% Similarity=0.226 Sum_probs=54.9
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHhhcCCCCcHHHHHHHHHhhcCC
Q psy7436 101 NGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKD 180 (243)
Q Consensus 101 ~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~D~~ 180 (243)
...+.+..|.++|.....-.+--+...+-..+|...++.|+. ..|+-|...+..+ ..+-+-|+.+-..
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~-----FEFDvFTRLFqPw-------~tllkNWq~Lavt 255 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISN-----FEFDVFTRLFQPW-------KTLLKNWQTLAVT 255 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceee-----ehhhhHHHhhccH-------HHHHHhhhhhhcc
Confidence 457888888888887654444444555555566666665432 2566677776666 5556667777677
Q ss_pred CCC---cccHHHHHHHHHHh
Q psy7436 181 GNG---FISAAELRHVMTNL 197 (243)
Q Consensus 181 ~~G---~i~~~e~~~~l~~~ 197 (243)
.-| .++.+|++.-|...
T Consensus 256 HPGYmAFLTYDEVk~RLqk~ 275 (563)
T KOG1785|consen 256 HPGYMAFLTYDEVKARLQKY 275 (563)
T ss_pred CCceeEEeeHHHHHHHHHHH
Confidence 776 46788887777654
No 242
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=26.58 E-value=1.4e+02 Score=17.45 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.5
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHH
Q psy7436 185 ISAAELRHVMTNLGEKLTDEEVDEM 209 (243)
Q Consensus 185 i~~~e~~~~l~~~~~~~~~~~~~~~ 209 (243)
.+.+++..+.+..|+.++..++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5589999999999999999988764
No 243
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=26.34 E-value=2.5e+02 Score=20.13 Aligned_cols=45 Identities=16% Similarity=0.342 Sum_probs=33.9
Q ss_pred HHHHHHHHhh-cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q psy7436 168 EEIREAFRVF-DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 214 (243)
Q Consensus 168 ~~~~~~f~~~-D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 214 (243)
+.+..+|..| |.+.+-..+.+++.+-|...| +...++...+.-++
T Consensus 3 dVL~yLfE~y~~~~~~~~~d~~~L~~~L~~aG--F~~~eI~~Al~WL~ 48 (155)
T PF04361_consen 3 DVLMYLFENYIDFESDACPDQDDLTRELSAAG--FEDEEINKALDWLE 48 (155)
T ss_pred HHHHHHHHHHcCCccccCCCHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 4456778876 555677789999999999999 67888887665544
No 244
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=25.90 E-value=1.5e+02 Score=17.34 Aligned_cols=44 Identities=20% Similarity=0.349 Sum_probs=21.3
Q ss_pred HHHHHhCCCCCHHHHHHHHHhc--CCCCCCcccHHHHHHHHHHhhccc
Q psy7436 192 HVMTNLGEKLTDEEVDEMIREA--DIDGDGQVNYEVYTIYCVHIMGNT 237 (243)
Q Consensus 192 ~~l~~~~~~~~~~~~~~~~~~~--d~~~~g~i~~~eF~~~~~~~~~~~ 237 (243)
.+|.+++. ++-+.+..+++.+ ++ ....++-+++..++.......
T Consensus 4 gMLtN~gs-l~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~lv~e~ 49 (60)
T PF08672_consen 4 GMLTNLGS-LPLDRIHSMLKMFPKDP-GGYDISLEELQEFLDRLVEEG 49 (60)
T ss_dssp HHHHHH-S-EEHHHHHHHHHHH-GGG---TT--HHHHHHHHHHHHHTT
T ss_pred HHhhcCCC-CCHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHHHHHCC
Confidence 34555554 5556666666666 22 223466666666666554443
No 245
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.34 E-value=1.2e+02 Score=20.37 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=11.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH
Q psy7436 17 TKELGTVMRSLGQNPTEAELQDMIN 41 (243)
Q Consensus 17 ~~ef~~~l~~l~~~l~~~~~~~~~~ 41 (243)
..|++.++..-+..++.+++.+++.
T Consensus 82 ~~ElRsIla~e~~~~s~E~l~~Ild 106 (114)
T COG1460 82 PDELRSILAKERVMLSDEELDKILD 106 (114)
T ss_pred HHHHHHHHHHccCCCCHHHHHHHHH
Confidence 3444444444444444444444443
No 246
>KOG4286|consensus
Probab=24.99 E-value=3.1e+02 Score=25.40 Aligned_cols=93 Identities=14% Similarity=0.192 Sum_probs=57.5
Q ss_pred hhhhhhccCCCccchHHHHHHHHhhcCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHH-------H------hCCCCC
Q psy7436 55 YAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT-------N------LGEKLT 121 (243)
Q Consensus 55 ~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~-------~------~~~~~~ 121 (243)
+...||+..+|+|..-+|.-.+.. ++.....+.++.+|......+... ....|...|. . +|..--
T Consensus 475 llNvyD~~R~g~irvls~ki~~i~-lck~~leek~~ylF~~vA~~~sq~-~q~~l~lLL~dliqipr~lGE~aAfGgsNv 552 (966)
T KOG4286|consen 475 LLNVYDTGRTGRIRVLSFKIGIIS-LCKAHLEDKYRYLFKQVASSTSQC-DQRRLGLLLHDLIQIPRQLGEVAAFGGSNI 552 (966)
T ss_pred HHHhcccCCCcceEEeeehhhHHH-HhcchhHHHHHHHHHHHcCchhhH-HHHHHHHHHHHHHHHHHHHhHHHhhcCCCC
Confidence 456678889999999999877753 444566788889999886544333 2445544443 2 233333
Q ss_pred HHHHHHHHHHhCcCCCCccccCCCCCCChHHHHHHHHh
Q psy7436 122 DEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159 (243)
Q Consensus 122 ~~~~~~l~~~~~~~~~~~i~~~~~~~i~~~ef~~~~~~ 159 (243)
+.-+..+|.-.. + .-.+.+..|+.++..
T Consensus 553 epsvrsCF~~v~--~--------~pei~~~~f~dw~~~ 580 (966)
T KOG4286|consen 553 EPSVRSCFQFVN--N--------KPEIEAALFLDWMRL 580 (966)
T ss_pred ChHHHHHHHhcC--C--------CCcchHHHHHHHhcc
Confidence 445556665222 1 112678888887654
No 247
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=24.89 E-value=3.8e+02 Score=21.72 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=20.0
Q ss_pred HHHcCCCCCHHHHHHHHHhcccccc
Q psy7436 24 MRSLGQNPTEAELQDMINEVDADEN 48 (243)
Q Consensus 24 l~~l~~~l~~~~~~~~~~~~~~~~~ 48 (243)
+..+.++...+|+++++..+..+++
T Consensus 15 m~~~dis~~~~e~~A~l~E~r~DyN 39 (323)
T cd01047 15 MAALDISKNREEFEAMLAEFKADYN 39 (323)
T ss_pred HHhcCCchhHHHHHHHHHHHHhCcc
Confidence 3567888888999999998888753
No 248
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=24.75 E-value=1.3e+02 Score=16.37 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHhCCCCCHHHH
Q psy7436 186 SAAELRHVMTNLGEKLTDEEV 206 (243)
Q Consensus 186 ~~~e~~~~l~~~~~~~~~~~~ 206 (243)
+.+++..+.+..|+.++..++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 688899999999998887765
No 249
>KOG2303|consensus
Probab=24.03 E-value=5e+02 Score=22.85 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=23.1
Q ss_pred HhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy7436 94 RVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129 (243)
Q Consensus 94 ~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~ 129 (243)
...|.|.-|.|++.+++.+++-....+.-..++.+.
T Consensus 532 SSADINPIGgISK~DLr~Fl~~a~~~~~lp~L~~il 567 (706)
T KOG2303|consen 532 SSADINPIGGISKTDLRRFLQYAKEKFGLPALQSIL 567 (706)
T ss_pred cccccCCccCccHHHHHHHHHHHHHhcCchHHHHHh
Confidence 344678889999999999987443333333344333
No 250
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=23.78 E-value=2.4e+02 Score=19.01 Aligned_cols=42 Identities=17% Similarity=0.373 Sum_probs=34.1
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Q psy7436 92 AFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 133 (243)
Q Consensus 92 ~f~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~ 133 (243)
.+-....-++..++.+++..+|...|..+.+.++..+++.+.
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 344444456677999999999999999999999999998885
No 251
>KOG4629|consensus
Probab=23.41 E-value=2e+02 Score=26.40 Aligned_cols=61 Identities=20% Similarity=0.295 Sum_probs=46.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhhcc
Q psy7436 169 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIMGN 236 (243)
Q Consensus 169 ~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~ 236 (243)
....+|+..-..+.-.+..+.+... +.+++++..+..++...++.|+++.|..+.......
T Consensus 405 aA~~iF~nv~~p~~~~i~ld~~~~f-------~~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~~~E 465 (714)
T KOG4629|consen 405 AARKIFKNVAKPGVILIDLDDLLRF-------MGDEEAERAFSLFEGASDENITRSSFKEWIVNIYRE 465 (714)
T ss_pred HHHHHHhccCCCCccchhhhhhhhc-------CCHHHHHHHHHhhhhhcccCccHHHHHHHHHHHHHH
Confidence 3566787777766666666665554 567899999999998778889999999998876553
No 252
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=23.33 E-value=1.9e+02 Score=23.61 Aligned_cols=87 Identities=21% Similarity=0.250 Sum_probs=49.3
Q ss_pred HHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcCCcccHHHHHHHH-----HhhcC
Q psy7436 24 MRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREAF-----RVFDK 98 (243)
Q Consensus 24 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~f-----~~~D~ 98 (243)
+..+++++.++|+++++..+..+++ ....+-=+||...+... ..+.+..| +..-.
T Consensus 31 m~~~dis~~~~e~~A~l~E~r~DyN--------------r~HF~R~~eF~~~~d~l------~~e~r~~FidFLerScTa 90 (351)
T CHL00185 31 MANYDISSNIEEIEAILEEFRADYN--------------QQHFIRDNEFNQSWSNL------DEKTKSLFVEFLERSCTA 90 (351)
T ss_pred HHhcCCchhHHHHHHHHHHHHhCcc--------------ccccccChhhhhchhhC------CHHHHHHHHHHHHHHhhh
Confidence 4667888889999999999888753 45555566666544322 11223333 22222
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcC
Q psy7436 99 DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 135 (243)
Q Consensus 99 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~ 135 (243)
.=+|.+=+.|+.+-++. ..+.+.++|..+..|
T Consensus 91 EFSGflLYKEl~rrlk~-----~nP~lae~F~lMaRD 122 (351)
T CHL00185 91 EFSGFLLYKELSRKLKD-----KNPLLAEGFLLMSRD 122 (351)
T ss_pred hhhhhHHHHHHHHHhcc-----CCcHHHHHHHHHhhh
Confidence 33677777776665543 124444455444444
No 253
>KOG1954|consensus
Probab=23.17 E-value=1.9e+02 Score=24.38 Aligned_cols=55 Identities=20% Similarity=0.232 Sum_probs=36.3
Q ss_pred hhhhhhc-CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHH
Q psy7436 3 EEYGSLL-DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTM 75 (243)
Q Consensus 3 ~~~f~~f-d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~ 75 (243)
+++|.-. .-+|+|+-.--+..+-. ..++..-+-++|+..|.+ .+|.++-+||.-+
T Consensus 447 de~fy~l~p~~gk~sg~~ak~~mv~--sklpnsvlgkiwklad~d----------------~dg~ld~eefala 502 (532)
T KOG1954|consen 447 DEIFYTLSPVNGKLSGRNAKKEMVK--SKLPNSVLGKIWKLADID----------------KDGMLDDEEFALA 502 (532)
T ss_pred HhhhhcccccCceeccchhHHHHHh--ccCchhHHHhhhhhhcCC----------------cccCcCHHHHHHH
Confidence 4444444 55677776555554432 345666677777777777 9999999999754
No 254
>KOG4301|consensus
Probab=22.92 E-value=1.7e+02 Score=24.04 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=43.6
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q psy7436 172 EAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHI 233 (243)
Q Consensus 172 ~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 233 (243)
.....+|..+.|.+++.-..-+|..+.-.--.+.+..+|..+. +..|-+.+-.|.+++...
T Consensus 114 flLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~ev 174 (434)
T KOG4301|consen 114 FLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEV 174 (434)
T ss_pred HHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH
Confidence 3456689999999999888888877643333567788888886 567776666666655544
No 255
>KOG0039|consensus
Probab=22.87 E-value=1.8e+02 Score=26.36 Aligned_cols=72 Identities=28% Similarity=0.545 Sum_probs=50.3
Q ss_pred CCccchHHHHHHHHhhcCCcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh---C-----CCCCHHHHHHHHHHhCcC
Q psy7436 64 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL---G-----EKLTDEEVDEMIREADID 135 (243)
Q Consensus 64 ~g~i~~~ef~~~~~~~~~~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~---~-----~~~~~~~~~~l~~~~~~~ 135 (243)
++ ++++||. ......+.+++..|..+|. .+|.++.+++..++... + .....+....++...+.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 35 8888888 3345567789999999987 89999999998877643 1 223445556677777777
Q ss_pred CCCccccC
Q psy7436 136 GDGQVNYE 143 (243)
Q Consensus 136 ~~~~i~~~ 143 (243)
..+.+...
T Consensus 74 ~~~y~~~~ 81 (646)
T KOG0039|consen 74 HKGYITNE 81 (646)
T ss_pred ccceeeec
Confidence 66654443
No 256
>KOG0869|consensus
Probab=22.60 E-value=3e+02 Score=19.76 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=30.3
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy7436 152 EFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 213 (243)
Q Consensus 152 ef~~~~~~~~~~~~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 213 (243)
||+.++... |-...-..+-.+|+-+++..+|..+|+.--.+-+...+..+
T Consensus 66 EfISFvT~E------------AsekC~~EkRKTIngdDllwAm~tLGFe~Y~eplkiyL~kY 115 (168)
T KOG0869|consen 66 EFISFVTGE------------ASEKCQREKRKTINGDDLLWAMSTLGFENYAEPLKIYLQKY 115 (168)
T ss_pred HHHHHHhhH------------HHHHHHHHhcCcccHHHHHHHHHHcCcHhHHHHHHHHHHHH
Confidence 677766553 22233345666899999999999998643333344444333
No 257
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=21.98 E-value=2.1e+02 Score=23.50 Aligned_cols=87 Identities=24% Similarity=0.330 Sum_probs=49.6
Q ss_pred HHHcCCCCCHHHHHHHHHhccccccchhhhhhhhhhhccCCCccchHHHHHHHHhhcCCcccHHHHHHHH-----HhhcC
Q psy7436 24 MRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREAF-----RVFDK 98 (243)
Q Consensus 24 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ef~~~~~~~~~~~~~~~~l~~~f-----~~~D~ 98 (243)
+..+++++.++|+++++..+..+++ ....+--++|...+... ..+.+..| +.+-.
T Consensus 35 m~~~d~s~~~~e~~A~l~E~r~DyN--------------r~HF~R~~ef~~~~d~l------~~e~r~~FidFLerScta 94 (355)
T PRK13654 35 MAKLDLSPNREELDAILEEMRADYN--------------RHHFVRDEEFDQDWDHL------DPETRKEFIDFLERSCTA 94 (355)
T ss_pred HHhcCCchhHHHHHHHHHHHHhCcc--------------cccccCChhhhhchhhC------CHHHHHHHHHHHHHHhhh
Confidence 4667888889999999999888753 44555556666644322 11223333 22222
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCcC
Q psy7436 99 DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 135 (243)
Q Consensus 99 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~~~~ 135 (243)
.=+|.+=+.|+.+-++.- .+.+.++|..+..|
T Consensus 95 EFSGflLYKEl~rrlk~~-----nP~lae~F~lMaRD 126 (355)
T PRK13654 95 EFSGFLLYKELSRRLKDR-----NPLLAELFQLMARD 126 (355)
T ss_pred hhhhHHHHHHHHHhcccc-----CcHHHHHHHHHhhh
Confidence 336677777766655421 24455555555444
No 258
>KOG2301|consensus
Probab=21.98 E-value=92 Score=31.41 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=33.0
Q ss_pred CcccHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC
Q psy7436 82 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 119 (243)
Q Consensus 82 ~~~~~~~l~~~f~~~D~~~~g~i~~~e~~~~l~~~~~~ 119 (243)
.++..+.+..+|..+|++..|.|+..++..+++.+..+
T Consensus 1412 s~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~pp 1449 (1592)
T KOG2301|consen 1412 SEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPP 1449 (1592)
T ss_pred CcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCc
Confidence 44667889999999999999999999999999987543
No 259
>PRK00441 argR arginine repressor; Provisional
Probab=21.97 E-value=2.1e+02 Score=20.29 Aligned_cols=43 Identities=23% Similarity=0.429 Sum_probs=33.1
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhcCC----CCCCcccH
Q psy7436 181 GNGFISAAELRHVMTNLGEKLTDEEVDEMIREADI----DGDGQVNY 223 (243)
Q Consensus 181 ~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~----~~~g~i~~ 223 (243)
..+..+.+|+...|...|+.+|+.-+.+-++.+.. +.+|..-|
T Consensus 15 ~~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~lvKv~~~~G~~~Y 61 (149)
T PRK00441 15 SKEIETQEELAEELKKMGFDVTQATVSRDIKELKLIKVLSNDGKYKY 61 (149)
T ss_pred HcCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcCcEEeECCCCCEEE
Confidence 35678999999999999999999888887776643 45665333
No 260
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=21.91 E-value=1.5e+02 Score=16.81 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=20.8
Q ss_pred CCCCcCHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy7436 11 GDGTITTKELGTVMRSLGQNPTEAELQDMIN 41 (243)
Q Consensus 11 ~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~ 41 (243)
..|.|+.+||..=+.....--+..++..++.
T Consensus 20 a~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred HCCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 5788888888877776554455555555543
No 261
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=21.78 E-value=74 Score=23.02 Aligned_cols=48 Identities=15% Similarity=0.309 Sum_probs=30.2
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q psy7436 165 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 213 (243)
Q Consensus 165 ~~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 213 (243)
....++..+++.+-......++..+|...| ..|+.+|++++......+
T Consensus 82 kt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c-GVGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 82 KTNLQLDAALKYLKSNPSEPIDVAEFEKAC-GVGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp -SHHHHHHHHHHHHHHGG-G--HHHHHHTT-TTT----HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHc-CCCeEECHHHHHHHHHHH
Confidence 345778888888866666679999998876 557788999888776655
No 262
>KOG2301|consensus
Probab=21.60 E-value=81 Score=31.76 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=48.9
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCC----HHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q psy7436 166 SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLT----DEEVDEMIREADIDGDGQVNYEVYTIYCVHI 233 (243)
Q Consensus 166 ~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 233 (243)
.-+...+++..+|++..|.|+..++..+++.+..++. .+. ..+...+-...+|.|++.+=+..+...
T Consensus 1415 d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1415 DFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred cHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 4467888999999999999999999999998854332 111 445555555677888888776666544
No 263
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=21.45 E-value=1.5e+02 Score=20.81 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhcCC
Q psy7436 185 ISAAELRHVMTNLGEKLTDEEVDEMIREADI 215 (243)
Q Consensus 185 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 215 (243)
.|.++.+.+...+...+|++++..++..++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 4667777776666667777777777777765
No 264
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=21.13 E-value=2.9e+02 Score=22.68 Aligned_cols=31 Identities=13% Similarity=0.297 Sum_probs=12.5
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q psy7436 102 GFISAAELRHVMTNLGEKLTDEEVDEMIREA 132 (243)
Q Consensus 102 g~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~ 132 (243)
|.||.+|-...++......++..++.+++.+
T Consensus 301 G~itReeal~~v~~~d~~~~~~~~~~~~~~l 331 (343)
T TIGR03573 301 GRITREEAIELVKEYDGEFPKEDLEYFLKYL 331 (343)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHh
Confidence 4444444444444432233333444444443
No 265
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=20.73 E-value=1.9e+02 Score=21.90 Aligned_cols=36 Identities=25% Similarity=0.234 Sum_probs=31.7
Q ss_pred CCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHhccc
Q psy7436 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDA 45 (243)
Q Consensus 10 d~~g~i~~~ef~~~l~~l~~~l~~~~~~~~~~~~~~ 45 (243)
|.+|+.+.+++...++.-+..++.+.+..+...-+.
T Consensus 55 D~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~K 90 (211)
T COG1859 55 DEEGWADIDELLEGLRKAGRWLTRELLLAVVATDDK 90 (211)
T ss_pred ccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCCC
Confidence 899999999999999999989999988888775443
No 266
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=20.51 E-value=1.6e+02 Score=18.95 Aligned_cols=23 Identities=9% Similarity=0.341 Sum_probs=8.5
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc
Q psy7436 191 RHVMTNLGEKLTDEEVDEMIREA 213 (243)
Q Consensus 191 ~~~l~~~~~~~~~~~~~~~~~~~ 213 (243)
+.+|+.-|..++.+++..++..+
T Consensus 15 k~lLk~rGi~v~~~~L~~f~~~i 37 (90)
T PF02337_consen 15 KHLLKERGIRVKKKDLINFLSFI 37 (90)
T ss_dssp HHHHHCCT----HHHHHHHHHHH
T ss_pred HHHHHHcCeeecHHHHHHHHHHH
Confidence 33333344455555555444444
No 267
>PHA02105 hypothetical protein
Probab=20.42 E-value=1.9e+02 Score=16.69 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=28.4
Q ss_pred cccHHHHHHHHHHhC---CCCCHHHHHHHHHhcCCCCC--CcccHHHHHHHHH
Q psy7436 184 FISAAELRHVMTNLG---EKLTDEEVDEMIREADIDGD--GQVNYEVYTIYCV 231 (243)
Q Consensus 184 ~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~--g~i~~~eF~~~~~ 231 (243)
+++++|+..++.+-. .++..+.++.+-..+..-.- -.++|+||-..+-
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccc
Confidence 467788888776542 45555555555444443322 2578888876543
No 268
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=20.42 E-value=1.5e+02 Score=18.50 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHH
Q psy7436 107 AELRHVMTNLGEKLTDEEVDEMIR 130 (243)
Q Consensus 107 ~e~~~~l~~~~~~~~~~~~~~l~~ 130 (243)
-|+..+|+++|..+++++..-+-.
T Consensus 20 vEIL~ALrkLge~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 20 VEILTALRKLGEKLSPEEEAFLEA 43 (78)
T ss_dssp HHHHHHHHHTT----HHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHH
Confidence 356778889999999988765543
No 269
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=20.26 E-value=2.7e+02 Score=19.84 Aligned_cols=30 Identities=7% Similarity=0.405 Sum_probs=24.5
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q psy7436 168 EEIREAFRVFDKDGNGFISAAELRHVMTNL 197 (243)
Q Consensus 168 ~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~ 197 (243)
+.+..-....|..+.++||.+|++.++-.+
T Consensus 69 q~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 69 QQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 556666777888899999999999888665
No 270
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=20.06 E-value=4.1e+02 Score=20.76 Aligned_cols=49 Identities=20% Similarity=0.479 Sum_probs=28.6
Q ss_pred ChHHHHHHHHhhcCCCC-cHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC
Q psy7436 149 DFPEFLTMMARKMKDTD-SEEEIREAFRVFDKDGNGFISAAELRHVMTNLG 198 (243)
Q Consensus 149 ~~~ef~~~~~~~~~~~~-~~~~~~~~f~~~D~~~~G~i~~~e~~~~l~~~~ 198 (243)
++..|..++........ -...-...|..+-..|. .++.+++..+|+.+.
T Consensus 7 e~~~FL~W~c~~V~~~NvLS~~El~~~~~L~~~Gk-iLeg~~Ld~aL~~~~ 56 (256)
T PF14932_consen 7 EFESFLDWFCSNVNESNVLSEEELQAFEELQKSGK-ILEGEALDEALKTIS 56 (256)
T ss_pred cHHHHHHHHHccCChhccCCHHHHHHHHHHHHcCC-cCCHHHHHHHHHHcc
Confidence 66788888877543321 11223345666655555 667777777776663
Done!