RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7436
(243 letters)
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 215 bits (550), Expect = 9e-72
Identities = 117/151 (77%), Positives = 124/151 (82%), Gaps = 24/151 (15%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD GNGTIDF
Sbjct: 23 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD----------------GNGTIDF 66
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
PEFLT+MARKMKDTDSEEEI+EAF+VFD+DGNGFISAAELRHVMTNLGEKLTDEEVDEMI
Sbjct: 67 PEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 126
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMARK 160
READ+DGDGQ+NYE EF+ MM K
Sbjct: 127 READVDGDGQINYE--------EFVKMMMSK 149
Score = 190 bits (484), Expect = 8e-62
Identities = 103/148 (69%), Positives = 120/148 (81%), Gaps = 11/148 (7%)
Query: 80 MKDTDSEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 136
M D +EE+I +EAF +FDKDG+G I+ EL VM +LG+ T+ E+ +MI E D DG
Sbjct: 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
Query: 137 DGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTN 196
NGTIDFPEFLT+MARKMKDTDSEEEI+EAF+VFD+DGNGFISAAELRHVMTN
Sbjct: 61 --------NGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTN 112
Query: 197 LGEKLTDEEVDEMIREADIDGDGQVNYE 224
LGEKLTDEEVDEMIREAD+DGDGQ+NYE
Sbjct: 113 LGEKLTDEEVDEMIREADVDGDGQINYE 140
Score = 54.0 bits (130), Expect = 3e-09
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 161 MKDTDSEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 217
M D +EE+I +EAF +FDKDG+G I+ EL VM +LG+ T+ E+ +MI E D DG
Sbjct: 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
Query: 218 DGQVNYEVYTIYCVHIMGNT 237
+G +++ + M +T
Sbjct: 61 NGTIDFPEFLTLMARKMKDT 80
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 140 bits (355), Expect = 4e-42
Identities = 67/134 (50%), Positives = 94/134 (70%), Gaps = 17/134 (12%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
D DG I ELG ++RSLG NP+EAE+ + E+DA GN T+DF
Sbjct: 32 DSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-----------------GNETVDF 74
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
PEFLT+M+ K+K D EEE+REAF++FDKD +G+IS ELR V+ +LGE+L+DEEV++++
Sbjct: 75 PEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLL 134
Query: 130 READIDGDGQVNYE 143
+E D DGDG+++YE
Sbjct: 135 KEYDEDGDGEIDYE 148
Score = 139 bits (353), Expect = 7e-42
Identities = 64/143 (44%), Positives = 102/143 (71%), Gaps = 9/143 (6%)
Query: 82 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 141
+ +E++EAF++FD+D +G I EL ++ +LG ++ E++++ E D
Sbjct: 15 TEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA------- 67
Query: 142 YEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL 201
GN T+DFPEFLT+M+ K+K D EEE+REAF++FDKD +G+IS ELR V+ +LGE+L
Sbjct: 68 --GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERL 125
Query: 202 TDEEVDEMIREADIDGDGQVNYE 224
+DEEV+++++E D DGDG+++YE
Sbjct: 126 SDEEVEKLLKEYDEDGDGEIDYE 148
Score = 40.8 bits (96), Expect = 1e-04
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 16/74 (21%)
Query: 9 LDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTID 68
D DG I+ EL V++SLG+ ++ E++ ++ E D D G+G ID
Sbjct: 103 KDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDED----------------GDGEID 146
Query: 69 FPEFLTMMARKMKD 82
+ EF ++
Sbjct: 147 YEEFKKLIKDSPTI 160
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 119 bits (301), Expect = 4e-34
Identities = 66/141 (46%), Positives = 89/141 (63%), Gaps = 8/141 (5%)
Query: 84 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 143
D ++EIREAF +FD DG+G I EL+ M +LG + EE+ +MI + D DG G
Sbjct: 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSG----- 68
Query: 144 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTD 203
IDF EFL +M +K+ + D EEI +AFR+FD D G IS L+ V LGE +TD
Sbjct: 69 ---KIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITD 125
Query: 204 EEVDEMIREADIDGDGQVNYE 224
EE+ EMI EAD +GDG+++ E
Sbjct: 126 EELQEMIDEADRNGDGEISEE 146
Score = 108 bits (271), Expect = 1e-29
Identities = 65/151 (43%), Positives = 83/151 (54%), Gaps = 24/151 (15%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
DG GTI KEL MRSLG P + E++ MI +VD D G+G IDF
Sbjct: 29 DGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKD----------------GSGKIDF 72
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
EFL +M +K+ + D EEI +AFR+FD D G IS L+ V LGE +TDEE+ EMI
Sbjct: 73 EEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMI 132
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMARK 160
EAD +GDG+ I EF +M +
Sbjct: 133 DEADRNGDGE--------ISEEEFYRIMKKT 155
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 79.5 bits (197), Expect = 1e-19
Identities = 42/71 (59%), Positives = 52/71 (73%), Gaps = 8/71 (11%)
Query: 88 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGT 147
E+REAFR+FDKDG+G ISA EL+ + +LGE L++EE+DEMIRE D DGD G
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGD--------GK 52
Query: 148 IDFPEFLTMMA 158
IDF EFL +MA
Sbjct: 53 IDFEEFLELMA 63
Score = 76.0 bits (188), Expect = 2e-18
Identities = 35/56 (62%), Positives = 48/56 (85%)
Query: 169 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
E+REAFR+FDKDG+G ISA EL+ + +LGE L++EE+DEMIRE D DGDG++++E
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFE 56
Score = 56.0 bits (136), Expect = 7e-11
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 16/68 (23%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
DGDGTI+ EL ++SLG+ +E E+ +MI EVD D G+G IDF
Sbjct: 12 DGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKD----------------GDGKIDF 55
Query: 70 PEFLTMMA 77
EFL +MA
Sbjct: 56 EEFLELMA 63
Score = 45.2 bits (108), Expect = 6e-07
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 63 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT 114
G+GTI E + + + + SEEEI E R DKDG+G I E +M
Sbjct: 13 GDGTISADELKAAL-KSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 53.9 bits (130), Expect = 4e-10
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 12/68 (17%)
Query: 94 RVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIRE----ADIDGDGQVNYEGNGTID 149
++ DKDG+G+I ELR ++ LG KLTDEEV+E+I D DGDG++++E
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFE------ 54
Query: 150 FPEFLTMM 157
EFL M
Sbjct: 55 --EFLEAM 60
Score = 52.0 bits (125), Expect = 2e-09
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 175 RVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIRE----ADIDGDGQVNYEVYTIYC 230
++ DKDG+G+I ELR ++ LG KLTDEEV+E+I D DGDG++++E +
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
Score = 42.4 bits (100), Expect = 7e-06
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAE 189
+ D DGDG ++ E + + L + K+ D + EE I F DKDG+G IS E
Sbjct: 1 KLLDKDGDGYIDVE-----ELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEE 55
Query: 190 LRHVM 194
M
Sbjct: 56 FLEAM 60
Score = 35.8 bits (83), Expect = 0.001
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 63 GNGTI---DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVM 113
G+G I + + L + K+ D + EE I F DKDG+G IS E M
Sbjct: 7 GDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
Score = 35.0 bits (81), Expect = 0.002
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 16/69 (23%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEV--DADENVESNLQYAELFVYHGNGTI 67
DGDG I +EL ++++LG T+ E++++I + D++ G+G I
Sbjct: 6 DGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKD--------------GDGRI 51
Query: 68 DFPEFLTMM 76
F EFL M
Sbjct: 52 SFEEFLEAM 60
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 53.3 bits (129), Expect = 5e-10
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 100 GNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
G I+ EL+ + LG L++EEVD + RE D DGDG++++E EF ++ R
Sbjct: 1 EKGLITREELKRALALLGISLSEEEVDILFREFDTDGDGKISFE--------EFCVLLQR 52
Query: 160 K 160
Sbjct: 53 L 53
Score = 49.8 bits (120), Expect = 9e-09
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 181 GNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
G I+ EL+ + LG L++EEVD + RE D DGDG++++E
Sbjct: 1 EKGLITREELKRALALLGISLSEEEVDILFREFDTDGDGKISFE 44
Score = 41.7 bits (99), Expect = 1e-05
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 16/69 (23%)
Query: 11 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFP 70
G IT +EL + LG + +E E+ + E D D G+G I F
Sbjct: 1 EKGLITREELKRALALLGISLSEEEVDILFREFDTD----------------GDGKISFE 44
Query: 71 EFLTMMARK 79
EF ++ R
Sbjct: 45 EFCVLLQRL 53
Score = 34.0 bits (79), Expect = 0.005
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 63 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL 116
G I E +A + + SEEE+ FR FD DG+G IS E ++ L
Sbjct: 1 EKGLITREELKRALA-LLGISLSEEEVDILFREFDTDGDGKISFEEFCVLLQRL 53
Score = 34.0 bits (79), Expect = 0.005
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 144 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL 197
G I E +A + + SEEE+ FR FD DG+G IS E ++ L
Sbjct: 1 EKGLITREELKRALA-LLGISLSEEEVDILFREFDTDGDGKISFEEFCVLLQRL 53
>gnl|CDD|205583 pfam13405, EF_hand_4, EF-hand domain.
Length = 30
Score = 43.4 bits (103), Expect = 1e-06
Identities = 19/30 (63%), Positives = 26/30 (86%)
Query: 88 EIREAFRVFDKDGNGFISAAELRHVMTNLG 117
E+REAF++FDKDG+G+ISA ELR + +LG
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSLG 30
Score = 43.4 bits (103), Expect = 1e-06
Identities = 19/30 (63%), Positives = 26/30 (86%)
Query: 169 EIREAFRVFDKDGNGFISAAELRHVMTNLG 198
E+REAF++FDKDG+G+ISA ELR + +LG
Sbjct: 1 ELREAFKLFDKDGDGYISAEELRKALRSLG 30
Score = 26.0 bits (58), Expect = 2.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 10 DGDGTITTKELGTVMRSLG 28
DGDG I+ +EL +RSLG
Sbjct: 12 DGDGYISAEELRKALRSLG 30
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 40.4 bits (96), Expect = 1e-05
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 88 EIREAFRVFDKDGNGFISAAELRHVMTNL 116
E++EAFR+FDKDG+G I E + ++ L
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
Score = 40.4 bits (96), Expect = 1e-05
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 169 EIREAFRVFDKDGNGFISAAELRHVMTNL 197
E++EAFR+FDKDG+G I E + ++ L
Sbjct: 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKAL 29
Score = 33.9 bits (79), Expect = 0.003
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 8/37 (21%)
Query: 124 EVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARK 160
E+ E R D DGD G IDF EF ++
Sbjct: 1 ELKEAFRLFDKDGD--------GKIDFEEFKDLLKAL 29
Score = 30.8 bits (71), Expect = 0.035
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 205 EVDEMIREADIDGDGQVNYE 224
E+ E R D DGDG++++E
Sbjct: 1 ELKEAFRLFDKDGDGKIDFE 20
Score = 28.1 bits (64), Expect = 0.39
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 16/45 (35%)
Query: 35 ELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARK 79
EL++ D D G+G IDF EF ++
Sbjct: 1 ELKEAFRLFDKD----------------GDGKIDFEEFKDLLKAL 29
Score = 24.6 bits (55), Expect = 6.7
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 10 DGDGTITTKELGTVMRSL 27
DGDG I +E ++++L
Sbjct: 12 DGDGKIDFEEFKDLLKAL 29
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not undergo
calcium dependent conformational changes.
Length = 29
Score = 39.7 bits (94), Expect = 2e-05
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 88 EIREAFRVFDKDGNGFISAAELRHVMTNL 116
E++EAF+ FDKDG+G IS E + ++ L
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
Score = 39.7 bits (94), Expect = 2e-05
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 169 EIREAFRVFDKDGNGFISAAELRHVMTNL 197
E++EAF+ FDKDG+G IS E + ++ L
Sbjct: 1 ELKEAFKEFDKDGDGKISFEEFKELLKKL 29
Score = 31.7 bits (73), Expect = 0.020
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 8/36 (22%)
Query: 124 EVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
E+ E +E D DGD G I F EF ++ +
Sbjct: 1 ELKEAFKEFDKDGD--------GKISFEEFKELLKK 28
Score = 29.0 bits (66), Expect = 0.19
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 205 EVDEMIREADIDGDGQVNYE 224
E+ E +E D DGDG++++E
Sbjct: 1 ELKEAFKEFDKDGDGKISFE 20
Score = 26.6 bits (60), Expect = 1.3
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 16/44 (36%)
Query: 35 ELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMAR 78
EL++ E D D G+G I F EF ++ +
Sbjct: 1 ELKEAFKEFDKD----------------GDGKISFEEFKELLKK 28
>gnl|CDD|238009 cd00052, EH, Eps15 homology domain; found in proteins implicated in
endocytosis, vesicle transport, and signal transduction.
The alignment contains a pair of EF-hand motifs,
typically one of them is canonical and binds to Ca2+,
while the other may not bind to Ca2+. A hydrophobic
binding pocket is formed by residues from both EF-hand
motifs. The EH domain binds to proteins containing NPF
(class I), [WF]W or SWG (class II), or H[TS]F (class
III) sequence motifs.
Length = 67
Score = 39.9 bits (94), Expect = 6e-05
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 91 EAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDF 150
+ FR D DG+G IS E R + G L + ++ AD D DG+ +D
Sbjct: 3 QIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGK--------LDK 52
Query: 151 PEF 153
EF
Sbjct: 53 EEF 55
Score = 38.4 bits (90), Expect = 2e-04
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 172 EAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 222
+ FR D DG+G IS E R + G L + ++ AD D DG+++
Sbjct: 3 QIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLD 51
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 36.9 bits (87), Expect = 3e-04
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 89 IREAFRVFDKDGNGFISAAELRHVM 113
+++ FR FD +G+G IS EL+ ++
Sbjct: 1 LKDLFRQFDTNGDGKISKEELKRLL 25
Score = 36.9 bits (87), Expect = 3e-04
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 170 IREAFRVFDKDGNGFISAAELRHVM 194
+++ FR FD +G+G IS EL+ ++
Sbjct: 1 LKDLFRQFDTNGDGKISKEELKRLL 25
>gnl|CDD|197477 smart00027, EH, Eps15 homology domain. Pair of EF hand motifs that
recognise proteins containing Asn-Pro-Phe (NPF)
sequences.
Length = 96
Score = 36.9 bits (86), Expect = 0.001
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 14/76 (18%)
Query: 82 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 141
D E+I FR DK+ +G ++ A+ + ++ G L + ++ ADID DG+
Sbjct: 8 DKAKYEQI---FRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGE-- 60
Query: 142 YEGNGTIDFPEF-LTM 156
+D EF L M
Sbjct: 61 ------LDKDEFALAM 70
Score = 34.2 bits (79), Expect = 0.011
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 163 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 222
D E+I FR DK+ +G ++ A+ + ++ G L + ++ ADID DG+++
Sbjct: 8 DKAKYEQI---FRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELD 62
Query: 223 YE 224
+
Sbjct: 63 KD 64
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 39.1 bits (91), Expect = 0.001
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 86 EEEIREAFRVF---DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 141
E E A R+ D D +G +S +E ++ G + + +E+ + AD++GDG V
Sbjct: 175 ETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVT 233
Score = 39.1 bits (91), Expect = 0.001
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 167 EEEIREAFRVF---DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 222
E E A R+ D D +G +S +E ++ G + + +E+ + AD++GDG V
Sbjct: 175 ETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVT 233
Score = 32.1 bits (73), Expect = 0.27
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 140 VNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAEL 190
V+Y+ +G + F EF ++ + + + + E F+ D +G+G ++ EL
Sbjct: 188 VDYDEDGQLSFSEFSDLI-KAFGNLVAANKKEELFKAADLNGDGVVTIDEL 237
Score = 29.4 bits (66), Expect = 2.0
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 61 YHGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAEL 109
Y +G + F EF ++ + + + + E F+ D +G+G ++ EL
Sbjct: 190 YDEDGQLSFSEFSDLI-KAFGNLVAANKKEELFKAADLNGDGVVTIDEL 237
>gnl|CDD|219990 pfam08726, efhand_Ca_insen, Ca2+ insensitive EF hand. EF hands are
helix-loop-helix binding motifs involved in the
regulation of many cellular processes. EF hands usually
bind to Ca2+ ions which causes a major conformational
change that allows the protein to interact with its
designated targets. This domain corresponds to an EF
hand which has partially or entirely lost its
calcium-binding properties. The calcium insensitive EF
hand is still able to mediate protein-protein
recognition.
Length = 69
Score = 33.8 bits (78), Expect = 0.009
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 82 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 130
DTD+ E++ ++FR +G +++ +LR LT E+ + I
Sbjct: 1 DTDTAEQVEQSFRAL-AEGKPYVTEEDLRR-------ALTPEQAEYCIA 41
Score = 33.8 bits (78), Expect = 0.009
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 163 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 211
DTD+ E++ ++FR +G +++ +LR LT E+ + I
Sbjct: 1 DTDTAEQVEQSFRAL-AEGKPYVTEEDLRR-------ALTPEQAEYCIA 41
>gnl|CDD|238131 cd00213, S-100, S-100: S-100 domain, which represents the largest
family within the superfamily of proteins carrying the
Ca-binding EF-hand motif. Note that this S-100 hierarchy
contains only S-100 EF-hand domains, other EF-hands have
been modeled separately. S100 proteins are expressed
exclusively in vertebrates, and are implicated in
intracellular and extracellular regulatory activities.
Intracellularly, S100 proteins act as Ca-signaling or
Ca-buffering proteins. The most unusual characteristic
of certain S100 proteins is their occurrence in
extracellular space, where they act in a cytokine-like
manner through RAGE, the receptor for advanced glycation
products. Structural data suggest that many S100 members
exist within cells as homo- or heterodimers and even
oligomers; oligomerization contributes to their
functional diversification. Upon binding calcium, most
S100 proteins change conformation to a more open
structure exposing a hydrophobic cleft. This hydrophobic
surface represents the interaction site of S100 proteins
with their target proteins. There is experimental
evidence showing that many S100 proteins have multiple
binding partners with diverse mode of interaction with
different targets. In addition to S100 proteins (such as
S100A1,-3,-4,-6,-7,-10,-11,and -13), this group includes
the ''fused'' gene family, a group of calcium binding
S100-related proteins. The ''fused'' gene family
includes multifunctional epidermal differentiation
proteins - profilaggrin, trichohyalin, repetin,
hornerin, and cornulin; functionally these proteins are
associated with keratin intermediate filaments and
partially crosslinked to the cell envelope. These
''fused'' gene proteins contain N-terminal sequence with
two Ca-binding EF-hands motif, which may be associated
with calcium signaling in epidermal cells and
autoprocessing in a calcium-dependent manner. In
contrast to S100 proteins, "fused" gene family proteins
contain an extraordinary high number of almost perfect
peptide repeats with regular array of polar and charged
residues similar to many known cell envelope proteins.
Length = 88
Score = 34.0 bits (79), Expect = 0.010
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 14/69 (20%)
Query: 97 DKDGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDF 150
K+G+ +S EL+ ++ L + E VD+++++ D++ DG+V DF
Sbjct: 19 GKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKV--------DF 70
Query: 151 PEFLTMMAR 159
EFL ++ +
Sbjct: 71 QEFLVLIGK 79
Score = 29.0 bits (66), Expect = 0.53
Identities = 13/53 (24%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 178 DKDGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMIREADIDGDGQVNYE 224
K+G+ +S EL+ ++ L + E VD+++++ D++ DG+V+++
Sbjct: 19 GKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQ 71
Score = 25.9 bits (58), Expect = 6.4
Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 19/62 (30%)
Query: 17 TKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMM 76
EL +++ + ++ ++D +++ G +DF EFL ++
Sbjct: 37 ETELPNFLKNQKDPEA---VDKIMKDLDVNKD----------------GKVDFQEFLVLI 77
Query: 77 AR 78
+
Sbjct: 78 GK 79
>gnl|CDD|188478 TIGR03963, rSAM_QueE_Clost, putative 7-cyano-7-deazaguanosine
(preQ0) biosynthesis protein QueE, clostridial. Members
of this radical SAM domain protein family appear to be
the Clostridial form of the queuosine biosynthesis
protein QueE. QueE is involved in making preQ0
(7-cyano-7-deazaquanine), a precursor of both the
bacterial/eukaryotic modified tRNA base queuosine and
the archaeal modified base archaeosine. Members occur in
preQ0 operons species that lack members of related
protein family TIGR03365 [Protein synthesis, tRNA and
rRNA base modification].
Length = 219
Score = 35.8 bits (83), Expect = 0.010
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 103 FISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
+I +++V GE L E +DE+I D +V E NG++D F R
Sbjct: 59 YIKETGVKNVTLTGGEPLLQENIDELIELLLGDAGLEVEIETNGSVDIAPFKERPDR 115
>gnl|CDD|193239 pfam12763, efhand_3, Cytoskeletal-regulatory complex EF hand. This
is an efhand family from the N-terminal of actin
cytoskeleton-regulatory complex END3 and similar
proteins from fungi and closely related species.
Length = 104
Score = 29.6 bits (67), Expect = 0.46
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 86 EEEIREAFRVFD--KDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 143
E EI++ + +F K N ++ ++ V+ N +L D+++ ++ ADID DG
Sbjct: 6 EWEIKKYWEIFSGLKPENNKLTGDQVSPVLKN--SRLPDDQLAKIWDLADIDSDG----- 58
Query: 144 GNGTIDFPEFLTMM 157
+DF EF M
Sbjct: 59 ---KLDFEEFCIAM 69
Score = 28.9 bits (65), Expect = 0.86
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 167 EEEIREAFRVFD--KDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
E EI++ + +F K N ++ ++ V+ N +L D+++ ++ ADID DG++++E
Sbjct: 6 EWEIKKYWEIFSGLKPENNKLTGDQVSPVLKN--SRLPDDQLAKIWDLADIDSDGKLDFE 63
Query: 225 VYTI 228
+ I
Sbjct: 64 EFCI 67
>gnl|CDD|188518 TIGR04003, rSAM_BssD, [benzylsuccinate synthase]-activating enzyme.
Members of this radical SAM protein family are
[benzylsuccinate synthase]-activating enzyme, a glycyl
radical active site-creating enzyme related to [pyruvate
formate-lyase]-activating enzyme and additional
uncharacterized homologs activating additional glycyl
radical-containing enzymes [Protein fate, Protein
modification and repair].
Length = 314
Score = 30.6 bits (69), Expect = 0.58
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 106 AAELRHVMTNLGEKLTDEEVDEMIREADID------GDGQVNYEGNGTIDFPEFLTMMAR 159
AA L +G+ ++ VDE++REA D G V G + +PEF +AR
Sbjct: 94 AACLTEARGIVGQAMS---VDEILREALSDSPFYRNSGGGVTISGGDPLMYPEFTLELAR 150
Query: 160 KMKD 163
++ D
Sbjct: 151 RLHD 154
>gnl|CDD|237678 PRK14335, PRK14335, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 455
Score = 29.5 bits (66), Expect = 1.5
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 123 EEVDEM----IREADIDGDGQVNYEGN----GTIDFPEFLTMMARKMKDTDSEEEIR 171
+E+D + +RE + G +Y G + FP+ L + R+ + TD IR
Sbjct: 188 QEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTDQIRWIR 244
>gnl|CDD|237136 PRK12557, PRK12557, H(2)-dependent methylenetetrahydromethanopterin
dehydrogenase-related protein; Provisional.
Length = 342
Score = 28.9 bits (65), Expect = 2.4
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVF---DKDGNGFISAAELRHVMTNLGEKLTDEEVD 126
PE L A M + ++++ A + D+D I AE++ + L +E+
Sbjct: 262 PELLLRSASSMHLLEKQKDLDAALEILENLDEDLLKEIEEAEIKPTTLVAAQALV-KEIK 320
Query: 127 EMIREADIDG 136
+I +G
Sbjct: 321 TLIGGRAAEG 330
Score = 28.9 bits (65), Expect = 2.4
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 151 PEFLTMMARKMKDTDSEEEIREAFRVF---DKDGNGFISAAELRHVMTNLGEKLTDEEVD 207
PE L A M + ++++ A + D+D I AE++ + L +E+
Sbjct: 262 PELLLRSASSMHLLEKQKDLDAALEILENLDEDLLKEIEEAEIKPTTLVAAQALV-KEIK 320
Query: 208 EMIREADIDG 217
+I +G
Sbjct: 321 TLIGGRAAEG 330
>gnl|CDD|234431 TIGR03990, Arch_GlmM, phosphoglucosamine mutase. The MMP1680
protein from Methanococcus maripaludis has been
characterized as the archaeal protein responsible for
the second step of UDP-GlcNAc biosynthesis. This GlmM
protein catalyzes the conversion of
glucosamine-6-phosphate to glucosamine-1-phosphate. The
first-characterized bacterial GlmM protein is modeled by
TIGR01455. These two families are members of the larger
phosphoglucomutase/phosphomannomutase family
(characterized by three domains: pfam02878, pfam02879
and pfam02880), but are not nearest neighbors to each
other. This model also includes a number of sequences
from non-archaea in the Bacteroides, Chlorobi,
Chloroflexi, Planctomycetes and Spirochaetes lineages.
Evidence supporting their inclusion in this equivalog as
having the same activity comes from genomic context and
phylogenetic profiling. A large number of these
organisms are known to produce exo-polysaccharide and
yet only appeared to contain the GlmS enzyme of the
GlmSMU pathway for UDP-GlcNAc biosynthesis
(GenProp0750). In some organisms including Leptospira,
this archaeal GlmM is found adjacent to the GlmS as well
as a putative GlmU non-orthologous homolog. Phylogenetic
profiling of the GlmS-only pattern using PPP identifies
members of this archaeal GlmM family as the
highest-scoring result [Central intermediary metabolism,
Amino sugars].
Length = 443
Score = 29.0 bits (66), Expect = 2.4
Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 30/108 (27%)
Query: 125 VDEMIRE-ADIDGDGQVNYEGNGTIDFPE-------------FLTMMARKMKDTDSEEEI 170
++M E A G EGNG FP+ FL ++A + K E+
Sbjct: 307 AEKMKEEGAVFGG------EGNGGWIFPDHHYCRDGLMAAALFLELLAEEGKPLS---EL 357
Query: 171 REAF-RVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 217
+ + + VM + E+ D E+D IDG
Sbjct: 358 LAELPKYPMSKEKVELPDEDKEEVMEAVEEEFADAEID------TIDG 399
>gnl|CDD|216756 pfam01875, Memo, Memo-like protein. This family contains members
from all branches of life. The molecular function of
this protein is unknown, but Memo (mediator of
ErbB2-driven cell motility) a human protein is included
in this family. It has been suggested that Memo controls
cell migration by relaying extracellular chemotactic
signals to the microtubule cytoskeleton.
Length = 274
Score = 28.5 bits (64), Expect = 3.4
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 80 MKDTDSEEEIREAFRVFDKD--GNGFISAAELRHVMTNLG------EKLTDEEVDEMIRE 131
M+D ++ +E+ EA KD N I++++ H G E + D + I E
Sbjct: 152 MQDPETAKELGEAIAEVIKDPGRNLVIASSDFSHYGRRFGLPHEIAESIRDRIGIKRIEE 211
Query: 132 ADIDGDGQVNYEGNGTID--FPEFLTM-MARKMKDT 164
+ D + N TI P + + +K+
Sbjct: 212 LNEDAFYEYLSGTNNTICGYGPIAVILIALKKLGAK 247
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 28.5 bits (64), Expect = 4.1
Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 10/137 (7%)
Query: 19 ELGTVM-RSLGQNPTEAELQDMINEVDADENVESNLQY-------AELFVYHGNGTIDFP 70
ELG V R L ++ + + +NEV + VE L+ + + G D P
Sbjct: 6 ELGLVQIRDLNEDVSAFQR-KFVNEVRRCDEVERKLRKLESKIKKLGIPLKDTGGKPDVP 64
Query: 71 EFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 130
+ + + D E EI+E + E +V+ L DE ++E+
Sbjct: 65 PSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFL-DENLEELSE 123
Query: 131 EADIDGDGQVNYEGNGT 147
+++D D + G
Sbjct: 124 LSNLDIDFKYLRGAEGL 140
>gnl|CDD|240156 cd05030, calgranulins, Calgranulins: S-100 domain found in proteins
belonging to the Calgranulin subgroup of the S100 family
of EF-hand calcium-modulated proteins, including S100A8,
S100A9, and S100A12 . Note that the S-100 hierarchy, to
which this Calgranulin group belongs, contains only
S-100 EF-hand domains, other EF-hands have been modeled
separately. These proteins are expressed mainly in
granulocytes, and are involved in inflammation, allergy,
and neuritogenesis, as well as in host-parasite
response. Calgranulins are modulated not only by
calcium, but also by other metals such as zinc and
copper. Structural data suggested that calgranulins may
exist in multiple structural forms, homodimers, as well
as hetero-oligomers. For example, the S100A8/S100A9
complex called calprotectin plays important roles in the
regulation of inflammatory processes, wound repair, and
regulating zinc-dependent enzymes as well as microbial
growth.
Length = 88
Score = 26.5 bits (59), Expect = 4.4
Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 8/35 (22%)
Query: 125 VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
+D++ + D + DGQ+++E EFL ++ +
Sbjct: 53 IDKIFEDLDTNQDGQLSFE--------EFLVLVIK 79
>gnl|CDD|227605 COG5280, COG5280, Phage-related minor tail protein [Function
unknown].
Length = 634
Score = 28.3 bits (63), Expect = 4.7
Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 18/195 (9%)
Query: 8 LLDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVY---HGN 64
LL G T+T K L + + Q + ++ E + E + L
Sbjct: 62 LLTGQVTLTVKNLDDLAKQQAQVDAQFGSGEIGEEAERLFTREIRVTEGGLTGSLSELNE 121
Query: 65 GTIDFPEFLTMMAR--KMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTD 122
T+ E + T + I E VF+ + +A + L +
Sbjct: 122 PTVSVREHGKGLKDEELRFVTGGDSSIAE---VFESIKDRVTAALGILMKAAGLKGGVAT 178
Query: 123 EEV-------DEMIREADIDGDGQVNYEGNGT-IDFPEFLTMM-ARKMKDTDSEEEIREA 173
+ + + D D + + + + + K DS E++ +A
Sbjct: 179 DVIAGGFQAGSAFSGDVD-DTLDEYGPQFGKNGKEAKKLFDTIIDGAQKGADSREKVGDA 237
Query: 174 FRVFDKDGNGFISAA 188
+ F++ AA
Sbjct: 238 LKEFNQQLQDASGAA 252
>gnl|CDD|172679 PRK14191, PRK14191, bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/ 5,10-methylene-tetrahydrofolate
cyclohydrolase; Provisional.
Length = 285
Score = 27.8 bits (62), Expect = 4.9
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 19 ELGTVMRSLGQNPTEAELQDMINEVDADENVE 50
+ + + +L +N TEAEL +I +++ D+N++
Sbjct: 60 GMDSDLHTLQENTTEAELLSLIKDLNTDQNID 91
>gnl|CDD|215162 PLN02288, PLN02288, mannose-6-phosphate isomerase.
Length = 394
Score = 27.7 bits (62), Expect = 5.4
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 183 GFISAAELRHVMTN---LGEKLTDEEVDEMIREADIDGDGQVNYEVYTIY 229
GF++ EL+ V+ L E + E D+++ + DG+ V + + +
Sbjct: 144 GFVTIQELKAVLRTVPELRELVGSEAADQLLALPEHDGEEDVKSVLRSAF 193
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 27.7 bits (62), Expect = 6.1
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 71 EFLTMMARKMKDTDSEEEIREAFR------VFDKDGNGFISAAELRHVMTNLGEKLTDEE 124
E L + + K SE E +A R + G E++ + L E+LT+
Sbjct: 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELS 89
Query: 125 VDEMIREADID 135
EA++
Sbjct: 90 AALKALEAELQ 100
Score = 27.7 bits (62), Expect = 6.1
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 152 EFLTMMARKMKDTDSEEEIREAFR------VFDKDGNGFISAAELRHVMTNLGEKLTDEE 205
E L + + K SE E +A R + G E++ + L E+LT+
Sbjct: 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELS 89
Query: 206 VDEMIREADID 216
EA++
Sbjct: 90 AALKALEAELQ 100
>gnl|CDD|184921 PRK14957, PRK14957, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 546
Score = 27.7 bits (61), Expect = 7.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 32 TEAELQDMINEVDADENVESNLQYAELFVYHGNGTI 67
++A+++D + + A EN+ S+ Q E YH G++
Sbjct: 179 SQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSL 214
>gnl|CDD|130785 TIGR01724, hmd_rel, H2-forming
N(5),N(10)-methenyltetrahydromethanopterin
dehydrogenase-related protein. This model represents a
sister clade to the authenticated coenzyme
F420-dependent
N(5),N(10)-methenyltetrahydromethanopterin reductase
(HMD) of TIGR01723. Two members, designated HmdII and
HmdIII, are found. Members are restricted to
methanogens, but the function is unknown [Unknown
function, Enzymes of unknown specificity].
Length = 341
Score = 27.2 bits (60), Expect = 7.6
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRV---FDKDGNGFISAAELRHVMTNLGEKLTDE 123
PE L AR M D +E++ A ++ D D +I AE+ H + LT E
Sbjct: 262 PELLVKSARSMHLLDRQEDLDAALKIISDLDDDVMKWIEGAEINHTDLVAAQALTKE 318
Score = 27.2 bits (60), Expect = 7.6
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 151 PEFLTMMARKMKDTDSEEEIREAFRV---FDKDGNGFISAAELRHVMTNLGEKLTDE 204
PE L AR M D +E++ A ++ D D +I AE+ H + LT E
Sbjct: 262 PELLVKSARSMHLLDRQEDLDAALKIISDLDDDVMKWIEGAEINHTDLVAAQALTKE 318
>gnl|CDD|240155 cd05029, S-100A6, S-100A6: S-100A6 domain found in proteins similar
to S100A6. S100A6 is a member of the S100 domain family
within EF-hand Ca2+-binding proteins superfamily. Note
that the S-100 hierarchy, to which this S-100A6 group
belongs, contains only S-100 EF-hand domains, other
EF-hands have been modeled separately. S100 proteins
exhibit unique patterns of tissue- and cell
type-specific expression and have been implicated in the
Ca2+-dependent regulation of diverse physiological
processes, including cell cycle regulation,
differentiation, growth, and metabolic control . S100A6
is normally expressed in the G1 phase of the cell cycle
in neuronal cells. The function of S100A6 remains
unclear, but evidence suggests that it is involved in
cell cycle regulation and exocytosis. S100A6 may also be
involved in tumorigenesis; the protein is overexpressed
in several tumors. Ca2+ binding to S100A6 leads to a
conformational change in the protein, which exposes a
hydrophobic surface for interaction with target
proteins. Several such proteins have been identified:
glyceraldehyde-3-phosphate dehydrogenase , annexins 2,
6 and 11 and Calcyclin-Binding Protein (CacyBP).
Length = 88
Score = 26.0 bits (57), Expect = 7.8
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 185 ISAAELRHVMTN---LGEKLTDEEVDEMIREADIDGDGQVNYEVYTIY 229
+S EL+ ++ +G KL D E+ +++ + D + D +VN++ Y +
Sbjct: 29 LSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTF 76
>gnl|CDD|240150 cd05023, S-100A11, S-100A11: S-100A11 domain found in proteins
similar to S100A11. S100A11 is a member of the S-100
domain family within EF-hand Ca2+-binding proteins
superfamily. Note that the S-100 hierarchy, to which
this S-100A11 group belongs, contains only S-100 EF-hand
domains, other EF-hands have been modeled separately.
S100 proteins exhibit unique patterns of tissue- and
cell type-specific expression and have been implicated
in the Ca2+-dependent regulation of diverse
physiological processes, including cell cycle
regulation, differentiation, growth, and metabolic
control . S100 proteins have also been associated with a
variety of pathological events, including neoplastic
transformation and neurodegenerative diseases such as
Alzheimer's, usually via over expression of the protein.
S100A11 is expressed in smooth muscle and other tissues
and involves in calcium-dependent membrane aggregation,
which is important for cell vesiculation . As is the
case for many other S100 proteins, S100A11 is homodimer,
which is able to form a heterodimer with S100B through
subunit exchange. Ca2+ binding to S100A11 results in a
conformational change in the protein, exposing a
hydrophobic surface that interacts with target proteins.
In addition to binding to annexin A1 and A6 S100A11
also interacts with actin and transglutaminase.
Length = 89
Score = 25.9 bits (57), Expect = 8.5
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 18/85 (21%)
Query: 83 TDSEEEIREAFRVFD----KDGNGF-ISAAELRHVM-TNLGEKLTDEE----VDEMIREA 132
T++E I VF KDG+ + +S E M T L +++ +D M+++
Sbjct: 2 TETERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKL 61
Query: 133 DIDGDGQVNYEGNGTIDFPEFLTMM 157
D++ DGQ +DF EFL ++
Sbjct: 62 DLNSDGQ--------LDFQEFLNLI 78
>gnl|CDD|238396 cd00773, HisRS-like_core, Class II Histidinyl-tRNA synthetase
(HisRS)-like catalytic core domain. HisRS is a
homodimer. It is responsible for the attachment of
histidine to the 3' OH group of ribose of the
appropriate tRNA. This domain is primarily responsible
for ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. Class II assignment is based upon
its structure and the presence of three characteristic
sequence motifs. This domain is also found at the
C-terminus of eukaryotic GCN2 protein kinase and at the
N-terminus of the ATP phosphoribosyltransferase
accessory subunit, HisZ. HisZ along with HisG catalyze
the first reaction in histidine biosynthesis. HisZ is
found only in a subset of bacteria and differs from
HisRS in lacking a C-terminal anti-codon binding domain.
Length = 261
Score = 27.2 bits (61), Expect = 8.8
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 47 ENVESNLQYAELFVYHGNGTIDFP--EFLTMMARKMKDTDSEEEIREAFRVFDKDGN 101
+E L+ E+F +G ID P E+ + RK +E +E +R DK G
Sbjct: 6 RYIEDTLR--EVFERYGYEEIDTPVFEYTELFLRKS----GDEVSKEMYRFKDKGGR 56
>gnl|CDD|224526 COG1610, COG1610, Uncharacterized conserved protein [Function
unknown].
Length = 148
Score = 26.5 bits (59), Expect = 9.0
Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 25/97 (25%)
Query: 120 LTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDK 179
+ EE+DE E D + E L ++A+++K + R++ ++K
Sbjct: 33 IKQEEIDERKDELDDE----------------EILKVLAKEIK------QRRDSAEEYEK 70
Query: 180 DGNGFISA---AELRHVMTNLGEKLTDEEVDEMIREA 213
G ++A AE+ + L ++L+++E+ ++ A
Sbjct: 71 AGRQDLAAKERAEIAIIEEYLPQQLSEDELRALVDAA 107
>gnl|CDD|237870 PRK14964, PRK14964, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 491
Score = 27.1 bits (60), Expect = 9.0
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 29 QNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMAR-KMKDTDSEE 87
Q +L + + ++ EN+E + + +L + +G++ FL A + SE+
Sbjct: 173 QKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEK 232
Query: 88 EIREAFRVFDKD 99
+R+ DK
Sbjct: 233 SVRDLLGCVDKH 244
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.135 0.375
Gapped
Lambda K H
0.267 0.0908 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,213,769
Number of extensions: 1336402
Number of successful extensions: 2107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2045
Number of HSP's successfully gapped: 158
Length of query: 243
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 149
Effective length of database: 6,768,326
Effective search space: 1008480574
Effective search space used: 1008480574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (25.8 bits)