RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7436
(243 letters)
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 261 bits (669), Expect = 1e-89
Identities = 128/180 (71%), Positives = 132/180 (73%), Gaps = 27/180 (15%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD GNGTIDF
Sbjct: 23 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD----------------GNGTIDF 66
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG+ISAAELRHVMTNLGEKLTDEEVDEMI
Sbjct: 67 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 126
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDS---EEEIREAFRVFDKDGNGFIS 186
READIDGDGQVNYE EF+ MM K + +E IR R K F
Sbjct: 127 READIDGDGQVNYE--------EFVQMMTAKGGGGGAAARKEVIRNKIRAIGKMARVFSV 178
Score = 213 bits (546), Expect = 6e-71
Identities = 108/148 (72%), Positives = 119/148 (80%), Gaps = 11/148 (7%)
Query: 80 MKDTDSEE---EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 136
M D +EE E +EAF +FDKDG+G I+ EL VM +LG+ T+ E+ +MI E D DG
Sbjct: 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
Query: 137 DGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTN 196
NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG+ISAAELRHVMTN
Sbjct: 61 --------NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTN 112
Query: 197 LGEKLTDEEVDEMIREADIDGDGQVNYE 224
LGEKLTDEEVDEMIREADIDGDGQVNYE
Sbjct: 113 LGEKLTDEEVDEMIREADIDGDGQVNYE 140
Score = 52.1 bits (126), Expect = 1e-08
Identities = 18/108 (16%), Positives = 25/108 (23%), Gaps = 57/108 (52%)
Query: 1 MIEEYGSLLDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFV 60
MI E +DGDG
Sbjct: 125 MIREAD--IDGDGQ---------------------------------------------- 136
Query: 61 YHGNGTIDFPEFLTMMARKMKDTDS---EEEIREAFRVFDKDGNGFIS 105
+++ EF+ MM K + +E IR R K F
Sbjct: 137 ------VNYEEFVQMMTAKGGGGGAAARKEVIRNKIRAIGKMARVFSV 178
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 265 bits (678), Expect = 2e-87
Identities = 118/220 (53%), Positives = 141/220 (64%), Gaps = 38/220 (17%)
Query: 16 TTKELGTVMRSLGQNPTEAELQ----DMINEVDADENVESNLQYAELFVYHGNGTIDFPE 71
+E + G T AE++ ++N ++ IDF E
Sbjct: 249 YIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKG-------------------IDFKE 289
Query: 72 FLTMMARKMK----DTDSEE---EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 124
++ K++ D +EE E +EAF +FDKDG+G I+ EL VM +LG+ T+ E
Sbjct: 290 DGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAE 349
Query: 125 VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGF 184
+ +MI E D DG NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG+
Sbjct: 350 LQDMINEVDADG--------NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGY 401
Query: 185 ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE
Sbjct: 402 ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 441
Score = 225 bits (576), Expect = 5e-72
Identities = 122/151 (80%), Positives = 124/151 (82%), Gaps = 24/151 (15%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD GNGTIDF
Sbjct: 324 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD----------------GNGTIDF 367
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG+ISAAELRHVMTNLGEKLTDEEVDEMI
Sbjct: 368 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 427
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMARK 160
READIDGDGQVNYE EF+ MM K
Sbjct: 428 READIDGDGQVNYE--------EFVQMMTAK 450
Score = 120 bits (302), Expect = 5e-32
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 30/145 (20%)
Query: 87 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNG 146
E + +F KD + + AE++ D ++ ++ G
Sbjct: 247 EGYIQERTIFFKDDGNYKTRAEVKFEG------------DTLVNRIELKG---------- 284
Query: 147 TIDFPEFLTMMARKMK----DTDSEE---EIREAFRVFDKDGNGFISAAELRHVMTNLGE 199
IDF E ++ K++ D +EE E +EAF +FDKDG+G I+ EL VM +LG+
Sbjct: 285 -IDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQ 343
Query: 200 KLTDEEVDEMIREADIDGDGQVNYE 224
T+ E+ +MI E D DG+G +++
Sbjct: 344 NPTEAELQDMINEVDADGNGTIDFP 368
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 234 bits (598), Expect = 1e-78
Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 34/194 (17%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
D GTIT EL ++ +G E+E++D+++ D D +GTID+
Sbjct: 22 DNSGTITFDELKDGLKRVGSELMESEIKDLMDAADID----------------KSGTIDY 65
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
EF+ + + EE + AF FDKDG+G+I+ E++ + G L D +D+MI
Sbjct: 66 GEFIAATVH-LNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFG--LDDIHIDDMI 122
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEE-------IREAFRVFDKDGN 182
+E D D DGQ++Y EF MM ++ + +R+A + D N
Sbjct: 123 KEIDQDNDGQIDYG--------EFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSN 174
Query: 183 GFISAAELRHVMTN 196
I H +
Sbjct: 175 QVIEGYFKHHHHHH 188
Score = 189 bits (482), Expect = 5e-61
Identities = 46/138 (33%), Positives = 78/138 (56%), Gaps = 11/138 (7%)
Query: 87 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNG 146
++E F++ D D +G I+ EL+ + +G +L + E+ +++ ADID +G
Sbjct: 10 GGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADID--------KSG 61
Query: 147 TIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEV 206
TID+ EF+ + + EE + AF FDKDG+G+I+ E++ + G L D +
Sbjct: 62 TIDYGEFIAATVH-LNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFG--LDDIHI 118
Query: 207 DEMIREADIDGDGQVNYE 224
D+MI+E D D DGQ++Y
Sbjct: 119 DDMIKEIDQDNDGQIDYG 136
Score = 49.5 bits (119), Expect = 1e-07
Identities = 18/122 (14%), Positives = 27/122 (22%), Gaps = 61/122 (50%)
Query: 1 MIEEYGSLLDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFV 60
MI+E D DG
Sbjct: 121 MIKEID--QDNDGQ---------------------------------------------- 132
Query: 61 YHGNGTIDFPEFLTMMARKMKDTDSEEE-------IREAFRVFDKDGNGFISAAELRHVM 113
ID+ EF MM ++ + +R+A + D N I H
Sbjct: 133 ------IDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIEGYFKHHHH 186
Query: 114 TN 115
+
Sbjct: 187 HH 188
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 229 bits (585), Expect = 9e-76
Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 58/249 (23%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEA------ELQDMINEVDADENVESNLQYAELFVYHG 63
DG G + KEL +++ L Q +A E++ +++
Sbjct: 28 DGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQR----------------D 71
Query: 64 NGTIDFPEFLTMMAR--------KMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTN 115
+G I E ++ + + S EE + +R +D D +GFI EL++ + +
Sbjct: 72 DGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKD 131
Query: 116 LGEKLT--------DEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDT--- 164
L EK E D M++ D + DG++ E ++ +
Sbjct: 132 LLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELT--------EMARLLPVQENFLLKF 183
Query: 165 ----DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIRE-----ADI 215
+E +AF ++D+DGNG+I EL ++ +L EK E I +
Sbjct: 184 QGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMAL 243
Query: 216 DGDGQVNYE 224
G++
Sbjct: 244 SDGGKLYRT 252
Score = 159 bits (403), Expect = 2e-48
Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 30/163 (18%)
Query: 84 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTD------EEVDEMIREADIDGD 137
+ + E + FD DG+G++ EL++++ L + E+ + + D
Sbjct: 13 ITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDD 72
Query: 138 GQVNYEGNGTIDFPEFLTMMAR--------KMKDTDSEEEIREAFRVFDKDGNGFISAAE 189
G I E ++ + + S EE + +R +D D +GFI E
Sbjct: 73 G--------KIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEE 124
Query: 190 LRHVMTNLGEKLT--------DEEVDEMIREADIDGDGQVNYE 224
L++ + +L EK E D M++ D + DG++
Sbjct: 125 LKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELT 167
Score = 124 bits (314), Expect = 5e-35
Identities = 28/171 (16%), Positives = 58/171 (33%), Gaps = 44/171 (25%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEA--------ELQDMINEVDADENVESNLQYAELFVY 61
D G I T+EL ++ L + + M+ D++
Sbjct: 115 DHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSN--------------- 159
Query: 62 HGNGTIDFPEFLTMMARKMKDT-------DSEEEIREAFRVFDKDGNGFISAAELRHVMT 114
+G ++ E ++ + +E +AF ++D+DGNG+I EL ++
Sbjct: 160 -NDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLK 218
Query: 115 NLGEKLTDEEVDEMIRE-----ADIDGDGQVNYEGNGTIDFPEFLTMMARK 160
+L EK E I + G++ + +++
Sbjct: 219 DLCEKNKQELDINNISTYKKNIMALSDGGKLYRT--------DLALILSAG 261
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 219 bits (560), Expect = 2e-73
Identities = 111/151 (73%), Positives = 120/151 (79%), Gaps = 24/151 (15%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD GNGTIDF
Sbjct: 22 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD----------------GNGTIDF 65
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
PEFL++MARKMK+ DSEEE+ EAF+VFD+DGNG ISAAELRHVMTNLGEKLTD+EVDEMI
Sbjct: 66 PEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMI 125
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMARK 160
READIDGDG +NYE EF+ MM K
Sbjct: 126 READIDGDGHINYE--------EFVRMMVSK 148
Score = 210 bits (537), Expect = 5e-70
Identities = 93/138 (67%), Positives = 110/138 (79%), Gaps = 8/138 (5%)
Query: 87 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNG 146
E +EAF +FDKDG+G I+ EL VM +LG+ T+ E+ +MI E D DG NG
Sbjct: 10 AEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG--------NG 61
Query: 147 TIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEV 206
TIDFPEFL++MARKMK+ DSEEE+ EAF+VFD+DGNG ISAAELRHVMTNLGEKLTD+EV
Sbjct: 62 TIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEV 121
Query: 207 DEMIREADIDGDGQVNYE 224
DEMIREADIDGDG +NYE
Sbjct: 122 DEMIREADIDGDGHINYE 139
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 219 bits (560), Expect = 3e-73
Identities = 66/151 (43%), Positives = 89/151 (58%), Gaps = 24/151 (15%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
DG GTI KEL MR+LG P + E++ MI+E+D D G+GTIDF
Sbjct: 40 DGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKD----------------GSGTIDF 83
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
EFLTMM KM + DS EEI +AFR+FD D +G I+ +LR V LGE LT+EE+ EMI
Sbjct: 84 EEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMI 143
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMARK 160
EAD + D +++ + EF+ +M +
Sbjct: 144 AEADRNDDNEIDED--------EFIRIMKKT 166
Score = 210 bits (536), Expect = 2e-69
Identities = 69/138 (50%), Positives = 90/138 (65%), Gaps = 8/138 (5%)
Query: 87 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNG 146
+EIREAF +FD DG+G I A EL+ M LG + EE+ +MI E D DG +G
Sbjct: 28 QEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDG--------SG 79
Query: 147 TIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEV 206
TIDF EFLTMM KM + DS EEI +AFR+FD D +G I+ +LR V LGE LT+EE+
Sbjct: 80 TIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEEL 139
Query: 207 DEMIREADIDGDGQVNYE 224
EMI EAD + D +++ +
Sbjct: 140 QEMIAEADRNDDNEIDED 157
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 214 bits (548), Expect = 1e-71
Identities = 64/150 (42%), Positives = 89/150 (59%), Gaps = 24/150 (16%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
DG GTI KEL MR+LG P + E++ MI+E+D + G G ++F
Sbjct: 18 DGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKE----------------GTGKMNF 61
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
+FLT+M +KM + D++EEI +AF++FD D G IS L+ V LGE LTDEE+ EMI
Sbjct: 62 GDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMI 121
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMAR 159
EAD DGDG+V+ + EFL +M +
Sbjct: 122 DEADRDGDGEVSEQ--------EFLRIMKK 143
Score = 207 bits (530), Expect = 6e-69
Identities = 65/138 (47%), Positives = 88/138 (63%), Gaps = 8/138 (5%)
Query: 87 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNG 146
+EIREAF +FD DG G I EL+ M LG + EE+ +MI E D +G G
Sbjct: 6 QEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEG--------TG 57
Query: 147 TIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEV 206
++F +FLT+M +KM + D++EEI +AF++FD D G IS L+ V LGE LTDEE+
Sbjct: 58 KMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEEL 117
Query: 207 DEMIREADIDGDGQVNYE 224
EMI EAD DGDG+V+ +
Sbjct: 118 QEMIDEADRDGDGEVSEQ 135
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 220 bits (563), Expect = 1e-71
Identities = 36/216 (16%), Positives = 72/216 (33%), Gaps = 40/216 (18%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
G G + ++L V+ E L+ + V+ D G + +
Sbjct: 134 SGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVEND----------------TKGRMSY 177
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
+ + + + FR D + NG +S E R LG D +
Sbjct: 178 ITLVAVA-------NDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDK-KSVQDALF 229
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAE 189
R AD D V + E++ + +R + D D +G +S E
Sbjct: 230 RYADEDESDDVGFS--------EYVHLGL-------CLLVLRILYAFADFDKSGQLSKEE 274
Query: 190 LRHVMTNLG-EKLTDEEVDEMIREADIDGDGQVNYE 224
++ V+ + + ++ + D+D ++Y+
Sbjct: 275 VQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQ 310
Score = 163 bits (413), Expect = 4e-49
Identities = 35/221 (15%), Positives = 67/221 (30%), Gaps = 46/221 (20%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEA---ELQDMINEVDADENVESNLQYAELFVYHGNGT 66
+E R + A L ++ +++ D +G
Sbjct: 63 KVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDD----------------ASGY 106
Query: 67 IDFPEFLTMMARKMKDTDSEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 123
M+ SEE+ R+ F G+G S +L+ V+ + + +
Sbjct: 107 NRLRPSKPML--------SEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEG 158
Query: 124 EVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG 183
+ ++ + D G + + + + + + FR D + NG
Sbjct: 159 PLKKLFVMVEND--------TKGRMSYITLVAVA-------NDLAALVADFRKIDTNSNG 203
Query: 184 FISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
+S E R LG D + R AD D V +
Sbjct: 204 TLSRKEFREHFVRLGFDK-KSVQDALFRYADEDESDDVGFS 243
Score = 136 bits (343), Expect = 9e-39
Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 33/155 (21%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+ +GT++ KE LG + ++ + D D + + F
Sbjct: 200 NSNGTLSRKEFREHFVRLGFD-KKSVQDALFRYADED----------------ESDDVGF 242
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLG-EKLTDEEVDEM 128
E++ + +R + D D +G +S E++ V+ + + ++ +
Sbjct: 243 SEYVHLGL-------CLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQ 295
Query: 129 IREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKD 163
D+D ++Y+ EF+ ++ D
Sbjct: 296 FSVVDVDDSKSLSYQ--------EFVMLVLLMFHD 322
Score = 94.5 bits (235), Expect = 4e-23
Identities = 27/187 (14%), Positives = 61/187 (32%), Gaps = 25/187 (13%)
Query: 47 ENVESNLQYAELFVYHGNGTIDFPEFLTMMAR---KMKDTDSEEEIREAFRVFDKDGNGF 103
E+N++ + +D F R + + E+E + +D+
Sbjct: 8 TQREANVKKVHENLEELQKKLDHTSFAHKEDRDRLEAQIAQKEQEQKAKLAEYDQKVQNE 67
Query: 104 ISAAELRHVMTNLG---EKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARK 160
A E + + ++++ + D G R
Sbjct: 68 FDARERAEREREAARGDAAAEKQRLASLLKDLEDDASGYNRL----------------RP 111
Query: 161 MKDTDSEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 217
K SEE+ R+ F G+G S +L+ V+ + + + + ++ + D
Sbjct: 112 SKPMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDT 171
Query: 218 DGQVNYE 224
G+++Y
Sbjct: 172 KGRMSYI 178
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 214 bits (548), Expect = 1e-71
Identities = 71/150 (47%), Positives = 102/150 (68%), Gaps = 25/150 (16%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
D G+I+ EL TVMRSLG +P+EAE+ D++NE+D D GN I+F
Sbjct: 23 DNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVD----------------GNHAIEF 66
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
EFL +M+R++K DSE+E+ EAF+VFDK+G+G ISAAEL+HV+T++GEKLTD EVDEM+
Sbjct: 67 SEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEML 126
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMAR 159
RE DG G++N + +F ++++
Sbjct: 127 REVS-DGSGEINIK--------QFAALLSK 147
Score = 208 bits (531), Expect = 5e-69
Identities = 75/148 (50%), Positives = 105/148 (70%), Gaps = 12/148 (8%)
Query: 80 MKDTDSEE---EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 136
M +EE E +EAF +FDKD +G ISA+EL VM +LG ++ EV +++ E D+DG
Sbjct: 1 MSQNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDG 60
Query: 137 DGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTN 196
N I+F EFL +M+R++K DSE+E+ EAF+VFDK+G+G ISAAEL+HV+T+
Sbjct: 61 --------NHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTS 112
Query: 197 LGEKLTDEEVDEMIREADIDGDGQVNYE 224
+GEKLTD EVDEM+RE DG G++N +
Sbjct: 113 IGEKLTDAEVDEMLREVS-DGSGEINIK 139
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 212 bits (543), Expect = 3e-70
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 29/157 (18%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
D DG I+ ++ SLG+ TE EL M+ E G I+F
Sbjct: 69 DKDGFISKNDIRATFDSLGRLCTEQELDSMVAE--------------------APGPINF 108
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
FLT+ ++ TD E+ I AF +FD +G+G L+ +T GEK + +EVD+ +
Sbjct: 109 TMFLTIFGDRIAGTDEEDVIVNAFNLFD-EGDGKCKEETLKRSLTTWGEKFSQDEVDQAL 167
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDS 166
EA IDG+G ++ + +F ++ + K+ +
Sbjct: 168 SEAPIDGNGLIDIK--------KFAQILTKGAKEEGA 196
Score = 201 bits (514), Expect = 8e-66
Identities = 48/138 (34%), Positives = 79/138 (57%), Gaps = 13/138 (9%)
Query: 87 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNG 146
+E +EAF++ D+D +GFIS ++R +LG T++E+D M+ E G
Sbjct: 57 QEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAE------------APG 104
Query: 147 TIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEV 206
I+F FLT+ ++ TD E+ I AF +FD +G+G L+ +T GEK + +EV
Sbjct: 105 PINFTMFLTIFGDRIAGTDEEDVIVNAFNLFD-EGDGKCKEETLKRSLTTWGEKFSQDEV 163
Query: 207 DEMIREADIDGDGQVNYE 224
D+ + EA IDG+G ++ +
Sbjct: 164 DQALSEAPIDGNGLIDIK 181
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 210 bits (538), Expect = 7e-70
Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 24/148 (16%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+ DG + EL M++LG + E+ D+I+E D++ G + +
Sbjct: 35 NNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSE----------------GRHLMKY 78
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
+F +M K+ D +EI+ AF++FD D G IS LR V LGE LTDEE+ MI
Sbjct: 79 DDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMI 138
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMM 157
E D+DGDG++N EF+ +
Sbjct: 139 EEFDLDGDGEINEN--------EFIAIC 158
Score = 207 bits (528), Expect = 2e-68
Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 11/151 (7%)
Query: 77 ARKMKDTDSEE---EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 133
+ + EE EI EAF +FD + +GF+ EL+ M LG +L E+ ++I E D
Sbjct: 10 SGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYD 69
Query: 134 IDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHV 193
+G + + +F +M K+ D +EI+ AF++FD D G IS LR V
Sbjct: 70 SEG--------RHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRV 121
Query: 194 MTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
LGE LTDEE+ MI E D+DGDG++N
Sbjct: 122 AKELGETLTDEELRAMIEEFDLDGDGEINEN 152
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 206 bits (528), Expect = 1e-68
Identities = 52/148 (35%), Positives = 74/148 (50%), Gaps = 25/148 (16%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+ G IT + L TV++ G A +M NE DA GNG I F
Sbjct: 18 ERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADAT----------------GNGKIQF 61
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
PEFL+MM R+MK T SE+ +R+AFR FD +G G+I A L+ + NLG++L E E +
Sbjct: 62 PEFLSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFL 121
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMM 157
+ + GQ+ Y+ F+ M
Sbjct: 122 GITETE-KGQIRYD--------NFINTM 140
Score = 202 bits (517), Expect = 5e-67
Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 9/138 (6%)
Query: 87 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNG 146
E +EAF +FD + GFI+ L+ V+ G ++ +EM EAD G NG
Sbjct: 6 SEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATG--------NG 57
Query: 147 TIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEV 206
I FPEFL+MM R+MK T SE+ +R+AFR FD +G G+I A L+ + NLG++L E
Sbjct: 58 KIQFPEFLSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEF 117
Query: 207 DEMIREADIDGDGQVNYE 224
E + + + GQ+ Y+
Sbjct: 118 AEFLGITETE-KGQIRYD 134
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 207 bits (529), Expect = 1e-68
Identities = 66/151 (43%), Positives = 95/151 (62%), Gaps = 27/151 (17%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
DG G I+TKELGTVMR LGQNPT+ EL +I EVD D G+GTIDF
Sbjct: 32 DGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDED----------------GSGTIDF 75
Query: 70 PEFLTMMARKMKDT---DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD 126
EFL MM R+MK+ SEEE+ FR+FDK+ +GFI EL ++ GE +T+E+++
Sbjct: 76 EEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIE 135
Query: 127 EMIREADIDGDGQVNYEGNGTIDFPEFLTMM 157
++++++D + DG+++++ EFL MM
Sbjct: 136 DLMKDSDKNNDGRIDFD--------EFLKMM 158
Score = 205 bits (523), Expect = 1e-67
Identities = 61/152 (40%), Positives = 93/152 (61%), Gaps = 11/152 (7%)
Query: 76 MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 135
AR + E + AF +FD DG G IS EL VM LG+ T EE+D +I E D D
Sbjct: 9 EARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDED 68
Query: 136 GDGQVNYEGNGTIDFPEFLTMMARKMKDT---DSEEEIREAFRVFDKDGNGFISAAELRH 192
G +GTIDF EFL MM R+MK+ SEEE+ FR+FDK+ +GFI EL
Sbjct: 69 G--------SGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGE 120
Query: 193 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
++ GE +T+E+++++++++D + DG+++++
Sbjct: 121 ILRATGEHVTEEDIEDLMKDSDKNNDGRIDFD 152
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 205 bits (524), Expect = 5e-68
Identities = 51/143 (35%), Positives = 84/143 (58%), Gaps = 12/143 (8%)
Query: 83 TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 142
T S ++I+E F++FDKD +G +S EL + +LG+ T+ E++ + + +
Sbjct: 1 TASADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKE------ 54
Query: 143 EGNGTIDFPEFLTMMARKMKD-TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL 201
D F T+ + +K T+ +E+ +AFR DK+GNG I AELR ++ NLG+ L
Sbjct: 55 -----FDLATFKTVYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDAL 109
Query: 202 TDEEVDEMIREADIDGDGQVNYE 224
T EV+E+++E + GDG +NYE
Sbjct: 110 TSSEVEELMKEVSVSGDGAINYE 132
Score = 203 bits (518), Expect = 3e-67
Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 28/149 (18%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
D DG ++ +ELG+ +RSLG+NPT AEL + +++A E D
Sbjct: 17 DNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKE-------------------FDL 57
Query: 70 PEFLTMMARKMKD-TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 128
F T+ + +K T+ +E+ +AFR DK+GNG I AELR ++ NLG+ LT EV+E+
Sbjct: 58 ATFKTVYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEEL 117
Query: 129 IREADIDGDGQVNYEGNGTIDFPEFLTMM 157
++E + GDG +NYE F+ M+
Sbjct: 118 MKEVSVSGDGAINYE--------SFVDML 138
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 203 bits (520), Expect = 2e-67
Identities = 55/153 (35%), Positives = 79/153 (51%), Gaps = 28/153 (18%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+ DG I ++L ++ S+G+NPT+ L+ M++E G I+F
Sbjct: 19 NRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE--------------------APGPINF 58
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
FLTM K+ TD E+ IR AF FD++ +GFI LR ++T +G++ TDEEVDEM
Sbjct: 59 TMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMY 118
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMARKMK 162
REA ID G NY EF ++ K
Sbjct: 119 REAPIDKKGNFNYV--------EFTRILKHGAK 143
Score = 203 bits (519), Expect = 3e-67
Identities = 55/138 (39%), Positives = 81/138 (58%), Gaps = 12/138 (8%)
Query: 87 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNG 146
+E +EAF + D++ +GFI +L ++ ++G+ TDE ++ M+ E G
Sbjct: 7 QEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE------------APG 54
Query: 147 TIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEV 206
I+F FLTM K+ TD E+ IR AF FD++ +GFI LR ++T +G++ TDEEV
Sbjct: 55 PINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEV 114
Query: 207 DEMIREADIDGDGQVNYE 224
DEM REA ID G NY
Sbjct: 115 DEMYREAPIDKKGNFNYV 132
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 202 bits (517), Expect = 6e-67
Identities = 54/150 (36%), Positives = 79/150 (52%), Gaps = 25/150 (16%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
GD IT ++G + R+LGQNPT AE+ ++ +E I F
Sbjct: 20 TGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEM--------------NAAAITF 65
Query: 70 PEFLTMMARKM--KDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 127
EFL M+ KD + E+ E RVFDK+GNG + AELRHV+ LGEK+T+EEV+E
Sbjct: 66 EEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEE 125
Query: 128 MIREADIDGDGQVNYEGNGTIDFPEFLTMM 157
+++ + D +G +NYE F+ +
Sbjct: 126 LMKGQE-DSNGCINYE--------AFVKHI 146
Score = 195 bits (497), Expect = 7e-64
Identities = 50/140 (35%), Positives = 84/140 (60%), Gaps = 9/140 (6%)
Query: 87 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNG 146
++ +EAF +FD+ G+ I+A+++ + LG+ T+ E+++++ +
Sbjct: 8 DDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMN------AA 61
Query: 147 TIDFPEFLTMMARKM--KDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 204
I F EFL M+ KD + E+ E RVFDK+GNG + AELRHV+ LGEK+T+E
Sbjct: 62 AITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEE 121
Query: 205 EVDEMIREADIDGDGQVNYE 224
EV+E+++ + D +G +NYE
Sbjct: 122 EVEELMKGQE-DSNGCINYE 140
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 202 bits (517), Expect = 7e-67
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 24/153 (15%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
DG + +LG V R LG NP ++ + G ++ F
Sbjct: 23 GRDGAVDAFKLGDVCRCLGINPRNEDVF-AVGGTHKM----------------GEKSLPF 65
Query: 70 PEFLTMMARKMK-DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 128
EFL M + + + EAF+ FD++G GFIS AELRHV+T LGE+L+DE+VDE+
Sbjct: 66 EEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEI 125
Query: 129 IREADIDGDGQVNYEGNGTIDFPEFLTMMARKM 161
I+ D+ D G + + +F+ +
Sbjct: 126 IKLTDLQED------LEGNVKYEDFVKKVMAGP 152
Score = 190 bits (484), Expect = 7e-62
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 14/143 (9%)
Query: 87 EEIREAFRVFD--KDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEG 144
+++++ F +FD +G + A +L V LG +E+V + G
Sbjct: 9 DDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDV-FAVGGTHKMG-------- 59
Query: 145 NGTIDFPEFLTMMARKMK-DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTD 203
++ F EFL M + + + EAF+ FD++G GFIS AELRHV+T LGE+L+D
Sbjct: 60 EKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSD 119
Query: 204 EEVDEMIREADI--DGDGQVNYE 224
E+VDE+I+ D+ D +G V YE
Sbjct: 120 EDVDEIIKLTDLQEDLEGNVKYE 142
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 202 bits (516), Expect = 1e-66
Identities = 52/155 (33%), Positives = 87/155 (56%), Gaps = 29/155 (18%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
D DG I ++LG MR++G PTE EL ++ +++ + G +DF
Sbjct: 23 DKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMN----------------LGGHVDF 66
Query: 70 PEFLTMMARKMK----DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTN-LGEKLTDEE 124
+F+ +M K+ D +E+R+AFR FD +G+G IS +ELR M LG ++ +
Sbjct: 67 DDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRD 126
Query: 125 VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
++E+IR+ D++GDG+V++E EF+ MM+R
Sbjct: 127 IEEIIRDVDLNGDGRVDFE--------EFVRMMSR 153
Score = 195 bits (497), Expect = 9e-64
Identities = 53/153 (34%), Positives = 92/153 (60%), Gaps = 16/153 (10%)
Query: 80 MKDTDSEE---EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 136
M + E E+REAFR FDKD +G+I+ +L + M +G T+ E+ E+ ++ +++
Sbjct: 1 MDRSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMN- 59
Query: 137 DGQVNYEGNGTIDFPEFLTMMARKMK----DTDSEEEIREAFRVFDKDGNGFISAAELRH 192
G +DF +F+ +M K+ D +E+R+AFR FD +G+G IS +ELR
Sbjct: 60 -------LGGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELRE 112
Query: 193 VMTN-LGEKLTDEEVDEMIREADIDGDGQVNYE 224
M LG ++ +++E+IR+ D++GDG+V++E
Sbjct: 113 AMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFE 145
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 202 bits (517), Expect = 1e-66
Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 14/157 (8%)
Query: 71 EFLTMMARKMKDTDSEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 127
+F M R + ++ SEEEI +E F + D D +G I+ EL+ + +G L + E+ +
Sbjct: 8 KFKKMALRVIAESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILD 67
Query: 128 MIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISA 187
+++ AD+D +GTID+ EF+ + + E+ + AF FDKDG+G+I+
Sbjct: 68 LMQAADVD--------NSGTIDYKEFIAAT-LHLNKIEREDHLFAAFTYFDKDGSGYITP 118
Query: 188 AELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
EL+ G + D ++E++R+ D D DG+++Y
Sbjct: 119 DELQQACEEFG--VEDVRIEELMRDVDQDNDGRIDYN 153
Score = 192 bits (491), Expect = 1e-62
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 27/150 (18%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
D G IT +EL ++ +G N E+E+ D++ D D +GTID+
Sbjct: 39 DKSGQITFEELKAGLKRVGANLKESEILDLMQAADVD----------------NSGTIDY 82
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
EF+ + + E+ + AF FDKDG+G+I+ EL+ G + D ++E++
Sbjct: 83 KEFIAAT-LHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFG--VEDVRIEELM 139
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMAR 159
R+ D D DG+++Y EF+ MM +
Sbjct: 140 RDVDQDNDGRIDYN--------EFVAMMQK 161
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 201 bits (515), Expect = 2e-66
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 29/154 (18%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
D DG I ++L + SLG+ P + EL M+ E G ++F
Sbjct: 28 DRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECP--------------------GQLNF 67
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
FLT+ K+ TD E+ +R AF +FD+DG GFI L+ ++ N+G+ + EE+ +
Sbjct: 68 TAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVW 127
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMARKMKD 163
++A + + Q NY + + + + +
Sbjct: 128 KDAPLK-NKQFNYN--------KMVDIKGKAEDE 152
Score = 195 bits (497), Expect = 7e-64
Identities = 44/138 (31%), Positives = 80/138 (57%), Gaps = 13/138 (9%)
Query: 87 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNG 146
+E++EAF + D+D +GFI +L+ + ++LG D+E++ M++E G
Sbjct: 16 QELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECP------------G 63
Query: 147 TIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEV 206
++F FLT+ K+ TD E+ +R AF +FD+DG GFI L+ ++ N+G+ + EE+
Sbjct: 64 QLNFTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEI 123
Query: 207 DEMIREADIDGDGQVNYE 224
+ ++A + + Q NY
Sbjct: 124 KNVWKDAPLK-NKQFNYN 140
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 201 bits (514), Expect = 2e-66
Identities = 44/157 (28%), Positives = 80/157 (50%), Gaps = 30/157 (19%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMIN-EVDADENVESNLQYAELFVYHGNGTID 68
G G I LG +R++G NPT +QD+IN + ++
Sbjct: 16 KGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLR----------------DASSLT 59
Query: 69 FPEFLTMMARKMKDTDS-----EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 123
+ ++ K+ D+ E+ +AF+VFDK+ G +S +LR+++T LGEKLTD
Sbjct: 60 LDQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDA 119
Query: 124 EVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARK 160
EVDE+++ ++D +G+++Y+ +F+ + R+
Sbjct: 120 EVDELLKGVEVDSNGEIDYK--------KFIEDVLRQ 148
Score = 194 bits (496), Expect = 9e-64
Identities = 41/143 (28%), Positives = 77/143 (53%), Gaps = 12/143 (8%)
Query: 87 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNG 146
++ F +FDK G G I+ L + +G T++ V ++I D
Sbjct: 4 RANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINA-DSSLRD------AS 56
Query: 147 TIDFPEFLTMMARKMKDTDS-----EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL 201
++ + ++ K+ D+ E+ +AF+VFDK+ G +S +LR+++T LGEKL
Sbjct: 57 SLTLDQITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKL 116
Query: 202 TDEEVDEMIREADIDGDGQVNYE 224
TD EVDE+++ ++D +G+++Y+
Sbjct: 117 TDAEVDELLKGVEVDSNGEIDYK 139
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 201 bits (514), Expect = 3e-66
Identities = 65/150 (43%), Positives = 95/150 (63%), Gaps = 27/150 (18%)
Query: 11 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFP 70
DG+I+TKELG VMR LGQNPT ELQ+MI+EVD D G+GT+DF
Sbjct: 32 EDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDED----------------GSGTVDFD 75
Query: 71 EFLTMMARKMKDTD---SEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 127
EFL MM R MKD SEEE+ + FR+FDK+ +G+I EL+ ++ GE +T+++++E
Sbjct: 76 EFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEE 135
Query: 128 MIREADIDGDGQVNYEGNGTIDFPEFLTMM 157
++++ D + DG+++Y+ EFL M
Sbjct: 136 LMKDGDKNNDGRIDYD--------EFLEFM 157
Score = 201 bits (513), Expect = 3e-66
Identities = 59/159 (37%), Positives = 94/159 (59%), Gaps = 15/159 (9%)
Query: 73 LTMMARKMKDTDSEE---EIREAFRVFDKDGN-GFISAAELRHVMTNLGEKLTDEEVDEM 128
+ + + + +EE E + AF +F G IS EL VM LG+ T EE+ EM
Sbjct: 1 MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEM 60
Query: 129 IREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTD---SEEEIREAFRVFDKDGNGFI 185
I E D DG +GT+DF EFL MM R MKD SEEE+ + FR+FDK+ +G+I
Sbjct: 61 IDEVDEDG--------SGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYI 112
Query: 186 SAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
EL+ ++ GE +T+++++E++++ D + DG+++Y+
Sbjct: 113 DLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYD 151
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 201 bits (513), Expect = 3e-66
Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 28/152 (18%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+G G ++T ++G ++ LG T++ ++ +I+E D GNG IDF
Sbjct: 26 EGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPF----------------GNGDIDF 69
Query: 70 PEFLTMMARKM----KDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEV 125
F + AR + ++E+REAFR++DK+GNG+IS +R ++ L E L+ E++
Sbjct: 70 DSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDETLSSEDL 129
Query: 126 DEMIREADIDGDGQVNYEGNGTIDFPEFLTMM 157
D MI E D DG G V++E EF+ +M
Sbjct: 130 DAMIDEIDADGSGTVDFE--------EFMGVM 153
Score = 192 bits (489), Expect = 1e-62
Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 16/153 (10%)
Query: 80 MKDTDSEE---EIREAFRVFDK-DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 135
S + AFR F+ +G+G +S ++ ++ LG + T + ++I E D
Sbjct: 3 DVSKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPF 62
Query: 136 GDGQVNYEGNGTIDFPEFLTMMARKM----KDTDSEEEIREAFRVFDKDGNGFISAAELR 191
G NG IDF F + AR + ++E+REAFR++DK+GNG+IS +R
Sbjct: 63 G--------NGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMR 114
Query: 192 HVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
++ L E L+ E++D MI E D DG G V++E
Sbjct: 115 EILAELDETLSSEDLDAMIDEIDADGSGTVDFE 147
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 200 bits (510), Expect = 1e-65
Identities = 42/157 (26%), Positives = 61/157 (38%), Gaps = 29/157 (18%)
Query: 10 DGDGTITTKELGTVMRSLGQ-NPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTID 68
+ DG I +L ++G+ N EL MI E +G I+
Sbjct: 37 NADGIIDKDDLRETFAAMGRLNVKNEELDAMIKE--------------------ASGPIN 76
Query: 69 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 128
F FLTM K+K D E+ I AF+V D DG G I + L ++T G + T EE+ M
Sbjct: 77 FTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNM 136
Query: 129 IREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTD 165
D G V+Y+ ++
Sbjct: 137 WAAFPPDVAGNVDYK--------NICYVITHGEDAEG 165
Score = 197 bits (504), Expect = 1e-64
Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 13/139 (9%)
Query: 87 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADIDGDGQVNYEGN 145
E+ +EAF V D++ +G I +LR +G +EE+D MI+E +
Sbjct: 25 EDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKE------------AS 72
Query: 146 GTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 205
G I+F FLTM K+K D E+ I AF+V D DG G I + L ++T G + T EE
Sbjct: 73 GPINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEE 132
Query: 206 VDEMIREADIDGDGQVNYE 224
+ M D G V+Y+
Sbjct: 133 IKNMWAAFPPDVAGNVDYK 151
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 199 bits (509), Expect = 1e-65
Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 29/154 (18%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
D DG ++ +++ + LG+ P + EL M+ E G ++F
Sbjct: 30 DRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAP--------------------GPLNF 69
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
FL++ + K+ TDSEE IR AF +FD+ ++ ++ ++ N+G+ +E+
Sbjct: 70 TMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTF 129
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMARKMKD 163
+EA ++G G D+ +F M+ ++
Sbjct: 130 KEAPVEG---------GKFDYVKFTAMIKGSGEE 154
Score = 194 bits (495), Expect = 2e-63
Identities = 41/151 (27%), Positives = 80/151 (52%), Gaps = 16/151 (10%)
Query: 77 ARKMKDTDSEE---EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 133
A + ++ E++EAF + D D +GF+S +++ + LG D+E+ M++EA
Sbjct: 5 ASGVLTKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAP 64
Query: 134 IDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHV 193
G ++F FL++ + K+ TDSEE IR AF +FD+ ++ ++ +
Sbjct: 65 ------------GPLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDL 112
Query: 194 MTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
+ N+G+ +E+ +EA ++G G+ +Y
Sbjct: 113 LENMGDNFNKDEMRMTFKEAPVEG-GKFDYV 142
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 198 bits (507), Expect = 2e-65
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 26/159 (16%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
DG + ++G ++R LG NPTEA++ G
Sbjct: 23 GRDGDVDAAKVGDLLRCLGMNPTEAQVHQHG-GTKKM----------------GEKAYKL 65
Query: 70 PEFLTMMAR--KMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 127
E L + + +E EAF+ FD++G G IS+AE+R+V+ LGE++T+++ ++
Sbjct: 66 EEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCND 125
Query: 128 MIREADIDGDGQVNYEGNGTIDFPEFLTMM-ARKMKDTD 165
+ DI D +G I + + + + A D
Sbjct: 126 IFTFCDIRED------IDGNIKYEDLMKKVMAGPFPDKS 158
Score = 183 bits (467), Expect = 4e-59
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 87 EEIREAFRVFD--KDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEG 144
EE+RE F +FD +G + AA++ ++ LG T+ +V + G
Sbjct: 9 EEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHG---GTKKMG------ 59
Query: 145 NGTIDFPEFLTMMAR--KMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLT 202
E L + + +E EAF+ FD++G G IS+AE+R+V+ LGE++T
Sbjct: 60 EKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERIT 119
Query: 203 DEEVDEMIREADI--DGDGQVNYE 224
+++ +++ DI D DG + YE
Sbjct: 120 EDQCNDIFTFCDIREDIDGNIKYE 143
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 196 bits (500), Expect = 9e-64
Identities = 36/153 (23%), Positives = 75/153 (49%), Gaps = 27/153 (17%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
D GT++++E+ ++ +G ++ ++ ++D++ +G I +
Sbjct: 69 DNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSN----------------ASGQIHY 112
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVM--TNLGEKLTDEEVDE 127
+FL K +E F+ FD DGNG IS EL+ + ++ L D+ +D
Sbjct: 113 TDFLAATIDKQTY-LKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDS 171
Query: 128 MIREADIDGDGQVNYEGNGTIDFPEFLTMMARK 160
+++E D++GDG++++ EF+ MM++K
Sbjct: 172 LLQEVDLNGDGEIDFH--------EFMLMMSKK 196
Score = 195 bits (499), Expect = 2e-63
Identities = 40/155 (25%), Positives = 79/155 (50%), Gaps = 14/155 (9%)
Query: 73 LTMMARKMKDTDSE-EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIRE 131
LT++A+ + D E +R F D D +G +S+ E+ + +G + ++ +++R+
Sbjct: 44 LTIIAKHL--CDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRD 101
Query: 132 ADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELR 191
D + +G I + +FL K +E F+ FD DGNG IS EL+
Sbjct: 102 IDSN--------ASGQIHYTDFLAATIDKQTY-LKKEVCLIPFKFFDIDGNGKISVEELK 152
Query: 192 HVM--TNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
+ ++ L D+ +D +++E D++GDG++++
Sbjct: 153 RIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFH 187
Score = 69.2 bits (170), Expect = 1e-14
Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 42/115 (36%)
Query: 110 RHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEE 169
+ +T + + L D E+
Sbjct: 41 KIALTIIAKHLCDVEI------------------------------------------NN 58
Query: 170 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
+R F D D +G +S+ E+ + +G + ++ +++R+ D + GQ++Y
Sbjct: 59 LRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYT 113
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 194 bits (495), Expect = 5e-63
Identities = 32/177 (18%), Positives = 71/177 (40%), Gaps = 38/177 (21%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
DG G I+ EL + S G + A + +++ D + +G I F
Sbjct: 39 DGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKN----------------HSGEITF 82
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
EF + + +RE FR D G+G + + E+R + + G +++++ ++
Sbjct: 83 DEFKDLHHFIL-------SMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALM 135
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFIS 186
R+ D G + ++ +++ + +R F +D++ G ++
Sbjct: 136 RKFDRQRRGSLGFD--------DYVELSIFVC-------RVRNVFAFYDRERTGQVT 177
Score = 188 bits (480), Expect = 8e-61
Identities = 35/168 (20%), Positives = 73/168 (43%), Gaps = 15/168 (8%)
Query: 68 DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 127
P + A + + +E+ E FR D DG+G IS EL +++ G + ++
Sbjct: 8 HMPTSTGVYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEK 67
Query: 128 MIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISA 187
++ D + +G I F EF + + +RE FR D G+G + +
Sbjct: 68 LLHMYDKNH--------SGEITFDEFKDLHHFIL-------SMREGFRKRDSSGDGRLDS 112
Query: 188 AELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIMG 235
E+R + + G +++++ ++R+ D G + ++ Y + +
Sbjct: 113 NEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSIFVCR 160
Score = 77.0 bits (190), Expect = 1e-17
Identities = 18/149 (12%), Positives = 38/149 (25%), Gaps = 65/149 (43%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
GDG + + E+ + S G +E Q ++ + D G++ F
Sbjct: 105 SGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQ----------------RRGSLGF 148
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
+++ + +R F +D++ G +
Sbjct: 149 DDYVELSIFVC-------RVRNVFAFYDRERTGQV------------------------- 176
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMA 158
T F F+
Sbjct: 177 -----------------TFTFDTFIGGSV 188
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 191 bits (489), Expect = 9e-63
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 15/144 (10%)
Query: 83 TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 142
+ + ++AF +FD+ G G I + ++ G+ T E+ E+
Sbjct: 1 STDDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIEST----------- 49
Query: 143 EGNGTIDFPEFLTMMARKM--KDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 200
+D +FL ++ R EE + F+VFDKD G I ELR+V+T+LGEK
Sbjct: 50 -LPAEVDMEQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEK 108
Query: 201 LTDEEVDEMIREADIDGDGQVNYE 224
L++EE+DE+++ + DG VNY
Sbjct: 109 LSNEEMDELLKGVPVK-DGMVNYH 131
Score = 191 bits (487), Expect = 2e-62
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 31/150 (20%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
G G I +G ++R+ GQNPT AE I E+++ +D
Sbjct: 17 HGTGRIPKTSIGDLLRACGQNPTLAE----ITEIEST----------------LPAEVDM 56
Query: 70 PEFLTMMARKM--KDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 127
+FL ++ R EE + F+VFDKD G I ELR+V+T+LGEKL++EE+DE
Sbjct: 57 EQFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDE 116
Query: 128 MIREADIDGDGQVNYEGNGTIDFPEFLTMM 157
+++ + DG VNY +F+ M+
Sbjct: 117 LLKGVPVK-DGMVNYH--------DFVQMI 137
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 190 bits (486), Expect = 3e-62
Identities = 57/150 (38%), Positives = 80/150 (53%), Gaps = 25/150 (16%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
GDG I + G VMR+LGQNPT AE+ ++ +DE + +DF
Sbjct: 22 VGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEL--------------KSRRVDF 67
Query: 70 PEFLTMMAR--KMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 127
FL M+ K + + E+ E FRVFDK+GNG + AELRHV+T LGEK+T+EEV+
Sbjct: 68 ETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVET 127
Query: 128 MIREADIDGDGQVNYEGNGTIDFPEFLTMM 157
++ D +G +NYE FL +
Sbjct: 128 VL-AGHEDSNGCINYE--------AFLKHI 148
Score = 184 bits (469), Expect = 1e-59
Identities = 55/140 (39%), Positives = 82/140 (58%), Gaps = 9/140 (6%)
Query: 87 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNG 146
EE +EAF +FD+ G+G I ++ VM LG+ T+ EV +++ D +
Sbjct: 10 EEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELK------SR 63
Query: 147 TIDFPEFLTMMAR--KMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 204
+DF FL M+ K + + E+ E FRVFDK+GNG + AELRHV+T LGEK+T+E
Sbjct: 64 RVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEE 123
Query: 205 EVDEMIREADIDGDGQVNYE 224
EV+ ++ D +G +NYE
Sbjct: 124 EVETVL-AGHEDSNGCINYE 142
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 188 bits (481), Expect = 1e-61
Identities = 23/150 (15%), Positives = 59/150 (39%), Gaps = 30/150 (20%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
G I+ R LG P+ + + + + +
Sbjct: 27 SSGGKISIDNASYNARKLGLAPSSIDEKKIKELYG--------------------DNLTY 66
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
++L ++ + D D+ EE+ + F FD + G+++ +++++++T G+ LTD+E + +
Sbjct: 67 EQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDAL 126
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMAR 159
+ ++Y+ F + +
Sbjct: 127 NAF--SSEDNIDYK--------LFCEDILQ 146
Score = 182 bits (464), Expect = 6e-59
Identities = 23/138 (16%), Positives = 59/138 (42%), Gaps = 14/138 (10%)
Query: 87 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNG 146
+E +K G IS + LG + + ++
Sbjct: 15 DESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYG------------D 62
Query: 147 TIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEV 206
+ + ++L ++ + D D+ EE+ + F FD + G+++ +++++++T G+ LTD+E
Sbjct: 63 NLTYEQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEA 122
Query: 207 DEMIREADIDGDGQVNYE 224
+ + + ++Y+
Sbjct: 123 IDALNAF--SSEDNIDYK 138
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 186 bits (476), Expect = 7e-61
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 30/150 (20%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+GDG ++ +E+ + E LQ + +DAD GNG ID
Sbjct: 12 NGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDAD----------------GNGEIDQ 55
Query: 70 PEFLTMMARKMKD--TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 127
EF +D + ++ +++ D DG+G ++ E+ G E+V E
Sbjct: 56 NEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHG----IEKVAE 111
Query: 128 MIREADIDGDGQVNYEGNGTIDFPEFLTMM 157
+ +AD +GDG + E EFL
Sbjct: 112 QVMKADANGDGYITLE--------EFLEFS 133
Score = 179 bits (457), Expect = 5e-58
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 14/137 (10%)
Query: 90 REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTID 149
F+ D +G+G +S E++ ++ ++ + + + D D GNG ID
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDAD--------GNGEID 54
Query: 150 FPEFLTMMARKMKD--TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD 207
EF +D + ++ +++ D DG+G ++ E+ G E+V
Sbjct: 55 QNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHG----IEKVA 110
Query: 208 EMIREADIDGDGQVNYE 224
E + +AD +GDG + E
Sbjct: 111 EQVMKADANGDGYITLE 127
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 189 bits (481), Expect = 7e-61
Identities = 33/175 (18%), Positives = 54/175 (30%), Gaps = 34/175 (19%)
Query: 10 DGDGTITTKEL-----GTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGN 64
+G+G IT E+ + L P + + + E
Sbjct: 32 NGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCG-----------MEYG 80
Query: 65 GTIDFPEFLTMMARKMKD----------TDSEEEIREAFRVFDKDGNGFISAAELRHVMT 114
I FP+FL + T E F +FDKDG+G I+ E +
Sbjct: 81 KEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGK 140
Query: 115 NLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEE 169
G + E+ + R D+D G ++ + E D E +
Sbjct: 141 ISGISPSQEDCEATFRHCDLDNAGDLDVD--------EMTRQHLGFWYTLDPEAD 187
Score = 183 bits (466), Expect = 1e-58
Identities = 38/168 (22%), Positives = 61/168 (36%), Gaps = 21/168 (12%)
Query: 75 MMARKMKDTDSEEEI---REAFRVFDKDGNGFISAAELRH-----VMTNLGEKLTDEEVD 126
+ D D+ I + F D +GNG I+ E+ + L +
Sbjct: 5 YAVKLKTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRH 64
Query: 127 EMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKD----------TDSEEEIREAFRV 176
++ EA G G E I FP+FL + T E F +
Sbjct: 65 QVCVEAFFRGCGM---EYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDI 121
Query: 177 FDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
FDKDG+G I+ E + G + E+ + R D+D G ++ +
Sbjct: 122 FDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVD 169
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 184 bits (470), Expect = 2e-59
Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 23/162 (14%)
Query: 71 EFLTMMARKMKDTDSEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 127
+T++A++ ++ ++ + F V D+DG G+I+ +L+ + G KL D
Sbjct: 37 LAMTIIAQQS----NDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLP-YNFDL 91
Query: 128 MIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISA 187
++ + D DG +G ID+ EF+ + + S++ I AFRVFD D +G I+
Sbjct: 92 LLDQIDSDG--------SGKIDYTEFIAAALDRKQL--SKKLIYCAFRVFDVDNDGEITT 141
Query: 188 AELRHVMTNLGEKLT-----DEEVDEMIREADIDGDGQVNYE 224
AEL H++ N +K V MIR+ D + DG++++
Sbjct: 142 AELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFH 183
Score = 178 bits (455), Expect = 6e-57
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 32/153 (20%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
DG G IT ++L + G +++++D+D G+G ID+
Sbjct: 64 DGKGYITKEQLKKGLEKDGL-KLPYNFDLLLDQIDSD----------------GSGKIDY 106
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLT-----DEE 124
EF+ + + S++ I AFRVFD D +G I+ AEL H++ N +K
Sbjct: 107 TEFIAAALDRKQL--SKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNR 164
Query: 125 VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMM 157
V MIR+ D + DG++++ EF MM
Sbjct: 165 VKRMIRDVDKNNDGKIDFH--------EFSEMM 189
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 184 bits (468), Expect = 6e-59
Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 22/165 (13%)
Query: 71 EFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELR-----------HVMTNLGEK 119
+ M K+ + +E+ + FR D +G+G + EL +++L
Sbjct: 24 AAMLFMGSKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSS 83
Query: 120 LTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDK 179
+ EVD +++ D D NG I++ EF+T+ K S E + AF+ FD
Sbjct: 84 QIEAEVDHILQSVDFDR--------NGYIEYSEFVTVCMDKQL-LLSRERLLAAFQQFDS 134
Query: 180 DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
DG+G I+ EL + ++ DE ++++E D + DG+V++E
Sbjct: 135 DGSGKITNEELGRLFGV--TEVDDETWHQVLQECDKNNDGEVDFE 177
Score = 174 bits (442), Expect = 4e-55
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 39/166 (23%)
Query: 10 DGDGTITTKEL-----------GTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAEL 58
+GDG + KEL G + L + EAE+ ++ VD D
Sbjct: 52 NGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFD------------ 99
Query: 59 FVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGE 118
NG I++ EF+T+ K S E + AF+ FD DG+G I+ EL +
Sbjct: 100 ----RNGYIEYSEFVTVCMDKQL-LLSRERLLAAFQQFDSDGSGKITNEELGRLFGV--T 152
Query: 119 KLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDT 164
++ DE ++++E D + DG+V++E EF+ MM +K+ D
Sbjct: 153 EVDDETWHQVLQECDKNNDGEVDFE--------EFVEMM-QKICDV 189
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 185 bits (470), Expect = 2e-58
Identities = 42/254 (16%), Positives = 97/254 (38%), Gaps = 55/254 (21%)
Query: 10 DGDGTITTKELGTVMRSLGQ--NPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTI 67
D +G I KEL R + + P + + + ++ + + +G +
Sbjct: 23 DDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKK--------SFMSAYDATFDGRL 74
Query: 68 DFPEFLTMMA----------RKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLG 117
E M+ R+ D+ E + +R +D D +G+ISAAEL++ + +L
Sbjct: 75 QIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLF 134
Query: 118 --------EKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARK--------- 160
DE D M++ D + DG+++ + ++A +
Sbjct: 135 LQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLN--------DLARILALQENFLLQFKM 186
Query: 161 --MKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK----LTDEEVDE----MI 210
+ + + + F +D G + E+ + ++ E ++ ++D+ ++
Sbjct: 187 DASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLL 246
Query: 211 READIDGDGQVNYE 224
D++ DG++
Sbjct: 247 THCDMNKDGKIQKS 260
Score = 131 bits (330), Expect = 2e-37
Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 20/163 (12%)
Query: 82 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL--TDEEVDEMIREADIDGDGQ 139
+ ++ FD D NG+I EL ++ +KL D+ DE +++
Sbjct: 6 ANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSA 65
Query: 140 VNYEGNGTIDFPEFLTMMA----------RKMKDTDSEEEIREAFRVFDKDGNGFISAAE 189
+ +G + E M+ R+ D+ E + +R +D D +G+ISAAE
Sbjct: 66 YDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAE 125
Query: 190 LRHVMTNLG--------EKLTDEEVDEMIREADIDGDGQVNYE 224
L++ + +L DE D M++ D + DG+++
Sbjct: 126 LKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLN 168
Score = 100 bits (251), Expect = 7e-26
Identities = 24/172 (13%), Positives = 62/172 (36%), Gaps = 35/172 (20%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
D G I+ EL ++ L + I DE ++ ++ + + +G +D
Sbjct: 116 DSSGYISAAELKNFLKDLFLQHKK-----KIPPNKLDEYTDAMMKIFDK---NKDGRLDL 167
Query: 70 PEFLTMMARK-----------MKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGE 118
+ ++A + + + + + F +D G + E+ + ++ E
Sbjct: 168 NDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMME 227
Query: 119 K----LTDEEVDE----MIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMK 162
++ ++D+ ++ D++ DG++ E + K K
Sbjct: 228 LVRPSISGGDLDKFRECLLTHCDMNKDGKIQKS--------ELALCLGLKHK 271
Score = 52.0 bits (124), Expect = 3e-08
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 10/91 (10%)
Query: 163 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTD----------EEVDEMIRE 212
+ ++ FD D NG+I EL ++ +KL + +
Sbjct: 6 ANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSA 65
Query: 213 ADIDGDGQVNYEVYTIYCVHIMGNTYLKIRK 243
D DG++ E + N L R+
Sbjct: 66 YDATFDGRLQIEELANMILPQEENFLLIFRR 96
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 178 bits (453), Expect = 5e-57
Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 39/178 (21%)
Query: 10 DGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADENVESNLQYAELFVYHGNGTID 68
D G I+ EL + + P ++ +I+ D + ++
Sbjct: 19 DRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRE----------------NKAGVN 62
Query: 69 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 128
F EF + + FR +D+D +G I EL+ ++ G +L+D+ D +
Sbjct: 63 FSEFTGVWKYITD-------WQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDIL 115
Query: 129 IREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFIS 186
IR+ D G GQ+ ++ +F+ + + + FR +D D +G+I
Sbjct: 116 IRKFDRQGRGQIAFD--------DFIQGCIVLQR-------LTDIFRRYDTDQDGWIQ 158
Score = 161 bits (409), Expect = 3e-50
Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 16/150 (10%)
Query: 86 EEEIREAFRVFDKDGNGFISAAELRHVMTNLG-EKLTDEEVDEMIREADIDGDGQVNYEG 144
+ + F+ DKD +G IS EL+ ++N V +I D +
Sbjct: 6 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDREN-------- 57
Query: 145 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 204
++F EF + + FR +D+D +G I EL+ ++ G +L+D+
Sbjct: 58 KAGVNFSEFTGVWKYITD-------WQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQ 110
Query: 205 EVDEMIREADIDGDGQVNYEVYTIYCVHIM 234
D +IR+ D G GQ+ ++ + C+ +
Sbjct: 111 FHDILIRKFDRQGRGQIAFDDFIQGCIVLQ 140
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 172 bits (439), Expect = 2e-54
Identities = 40/179 (22%), Positives = 67/179 (37%), Gaps = 37/179 (20%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
DG ++ E + LG +AE + + + D + G+GT+D
Sbjct: 49 DGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRN----------------GSGTLDL 92
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELR-------HVMTNLGEKLTD 122
EFL + M E I AF D+ G+G ++ +LR H GE D
Sbjct: 93 EEFLRALRPPMSQ-AREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTED 151
Query: 123 EEVDEMIREADI-DGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEE----IREAFRV 176
E + + D + DGQV EF + +++EE + A+++
Sbjct: 152 EVLRRFLDNFDSSEKDGQVTLA--------EFQDYYSGVSASMNTDEEFVAMMTSAWQL 202
Score = 167 bits (426), Expect = 2e-52
Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 17/146 (11%)
Query: 87 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNG 146
+ + FR D+DG+ + A E R + LG L E + + R+ D + G+G
Sbjct: 37 QGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRN--------GSG 88
Query: 147 TIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELR-------HVMTNLGE 199
T+D EFL + M E I AF D+ G+G ++ +LR H GE
Sbjct: 89 TLDLEEFLRALRPPMSQ-AREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGE 147
Query: 200 KLTDEEVDEMIREADI-DGDGQVNYE 224
DE + + D + DGQV
Sbjct: 148 WTEDEVLRRFLDNFDSSEKDGQVTLA 173
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 167 bits (425), Expect = 1e-52
Identities = 28/151 (18%), Positives = 59/151 (39%), Gaps = 22/151 (14%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+ +G+++ +E+ TV+ S+G + ++ ++ +D + G I +
Sbjct: 51 NHNGSLSHREIYTVLASVGI--KKWDINRILQALDIN----------------DRGNITY 92
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
EF+ R ++ AF DKD +G+IS +++ ++ + L + ++D
Sbjct: 93 TEFMAGCYRWKNI--ESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKV--LDNNDIDNFF 148
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMARK 160
G I F EF M
Sbjct: 149 LSVHSIKKGIPREHIINKISFQEFKDYMLST 179
Score = 166 bits (422), Expect = 4e-52
Identities = 30/161 (18%), Positives = 71/161 (44%), Gaps = 23/161 (14%)
Query: 73 LTMMARKMKDTDSE-EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIRE 131
+ +MA ++ ++ + I E F D + NG +S E+ V+ ++G + +++ +++
Sbjct: 24 INIMAHELSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLASVG--IKKWDINRILQA 81
Query: 132 ADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELR 191
DI+ G I + EF+ R ++ AF DKD +G+IS +++
Sbjct: 82 LDIND--------RGNITYTEFMAGCYRWKNI--ESTFLKAAFNKIDKDEDGYISKSDIV 131
Query: 192 HVMTNLGEKLTDEEVDEMIREADIDGDG--------QVNYE 224
++ + L + ++D G +++++
Sbjct: 132 SLVHDKV--LDNNDIDNFFLSVHSIKKGIPREHIINKISFQ 170
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 166 bits (421), Expect = 6e-52
Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 21/166 (12%)
Query: 77 ARKMKDTDSEEEI---REAFRVFDKDGNGFISAAEL-----RHVMTNLGEKLTDEEVDEM 128
++ D D+ I + F D + NG IS E+ V+ NLG + +
Sbjct: 3 SKLTSDFDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKD 62
Query: 129 IREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKD----------TDSEEEIREAFRVFD 178
EA G G + D+P ++ + D T F + D
Sbjct: 63 AVEAFFGGAGM---KYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVD 119
Query: 179 KDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
KD NG I+ E + G + E+ +E R DID GQ++ +
Sbjct: 120 KDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVD 165
Score = 163 bits (415), Expect = 5e-51
Identities = 33/175 (18%), Positives = 54/175 (30%), Gaps = 34/175 (19%)
Query: 10 DGDGTITTKEL-----GTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGN 64
+ +G I+ E+ V+ +LG P +A+ E
Sbjct: 28 NHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAG-----------MKYG 76
Query: 65 GTIDFPEFLTMMARKMKD----------TDSEEEIREAFRVFDKDGNGFISAAELRHVMT 114
D+P ++ + D T F + DKD NG I+ E +
Sbjct: 77 VETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTK 136
Query: 115 NLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEE 169
G + E+ +E R DID GQ++ + E D E
Sbjct: 137 AAGIIQSSEDCEETFRVCDIDESGQLDVD--------EMTRQHLGFWYTMDPACE 183
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 163 bits (415), Expect = 2e-51
Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 33/155 (21%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
D G+++ +E + + L QNP +Q +I+ D D GNG +DF
Sbjct: 18 DNSGSLSVEEFMS-LPELQQNP---LVQRVIDIFDTD----------------GNGEVDF 57
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL-GEKLTDEE---- 124
EF+ +++ D E+++R AFR++D D +G+IS EL V+ + G L D +
Sbjct: 58 KEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQI 117
Query: 125 VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
VD+ I AD DGDG++++E EF ++
Sbjct: 118 VDKTIINADKDGDGRISFE--------EFCAVVGG 144
Score = 163 bits (414), Expect = 2e-51
Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 17/148 (11%)
Query: 82 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 141
D D + + + F+ D D +G +S E +L E + V +I D DG
Sbjct: 1 DADEIKRLGKRFKKLDLDNSGSLSVEEFM----SLPELQQNPLVQRVIDIFDTDG----- 51
Query: 142 YEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL-GEK 200
NG +DF EF+ +++ D E+++R AFR++D D +G+IS EL V+ + G
Sbjct: 52 ---NGEVDFKEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNN 108
Query: 201 LTDEE----VDEMIREADIDGDGQVNYE 224
L D + VD+ I AD DGDG++++E
Sbjct: 109 LKDTQLQQIVDKTIINADKDGDGRISFE 136
Score = 46.8 bits (112), Expect = 6e-07
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 21/75 (28%)
Query: 9 LDGDGTITTKELGTVMRSL-GQNPTEAELQ----DMINEVDADENVESNLQYAELFVYHG 63
+D DG I+ EL V++ + G N + +LQ I D D G
Sbjct: 86 MDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKD----------------G 129
Query: 64 NGTIDFPEFLTMMAR 78
+G I F EF ++
Sbjct: 130 DGRISFEEFCAVVGG 144
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 155 bits (395), Expect = 1e-48
Identities = 35/153 (22%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Query: 33 EAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREA 92
E + M+ E + + + L +MA KM + E+ +
Sbjct: 2 EPTEKSMLLETTST----------------TKMETKYEDMLPVMAEKMDVEEFVSELCKG 45
Query: 93 FRVFDKDGNGFISAAELRHVMTNLG-EKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFP 151
F + I+A LR LG E ++ E+ M+RE D+DGDG +N
Sbjct: 46 FSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQT-------- 97
Query: 152 EFLTMMARKMKD--TDSEEEIREAFRVFDKDGN 182
EF +M R + D+E + +A + N
Sbjct: 98 EFCVLMVRLSPEMMEDAETWLEKALTQELCNHN 130
Score = 137 bits (348), Expect = 1e-41
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 122 DEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 181
+ M+ E + + L +MA KM + E+ + F +
Sbjct: 2 EPTEKSMLLETTSTT--------KMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPE 53
Query: 182 NGFISAAELRHVMTNLG-EKLTDEEVDEMIREADIDGDGQVNYE 224
I+A LR LG E ++ E+ M+RE D+DGDG +N
Sbjct: 54 RHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQT 97
Score = 60.4 bits (147), Expect = 5e-12
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 19/95 (20%)
Query: 10 DGDGTITTKELGTVMRSLG-QNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTID 68
IT + L LG + ++ + Q M+ E D D G+G ++
Sbjct: 52 PERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLD----------------GDGALN 95
Query: 69 FPEFLTMMARKMKD--TDSEEEIREAFRVFDKDGN 101
EF +M R + D+E + +A + N
Sbjct: 96 QTEFCVLMVRLSPEMMEDAETWLEKALTQELCNHN 130
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 155 bits (393), Expect = 6e-48
Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 31/162 (19%)
Query: 84 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL---------------TDEEVDEM 128
+ E I F FD+DGNG I ++ + + + +
Sbjct: 1 EYERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGL 60
Query: 129 IREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEE------IREAFRVFDKDGN 182
AD DGD I EF+T ++++D + A V D DG+
Sbjct: 61 AGIADRDGDQ--------RITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGD 112
Query: 183 GFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
G ++ A+ +T G + ++ + D DGDG+V
Sbjct: 113 GAVTVADTARALTAFG--VPEDLARQAAAALDTDGDGKVGET 152
Score = 146 bits (369), Expect = 2e-44
Identities = 33/171 (19%), Positives = 57/171 (33%), Gaps = 47/171 (27%)
Query: 10 DGDGTITTKELGTVMRSLG---------------QNPTEAELQDMINEVDADENVESNLQ 54
DG+G I + +++ EA Q + D D
Sbjct: 16 DGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRD-------- 67
Query: 55 YAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEE------IREAFRVFDKDGNGFISAAE 108
G+ I EF+T ++++D + A V D DG+G ++ A+
Sbjct: 68 --------GDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVAD 119
Query: 109 LRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
+T G + ++ + D DGDG+V E + AR
Sbjct: 120 TARALTAFG--VPEDLARQAAAALDTDGDGKVGET--------EIVPAFAR 160
Score = 63.2 bits (154), Expect = 1e-12
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 15/88 (17%)
Query: 165 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL---------------TDEEVDEM 209
+ E I F FD+DGNG I ++ + + + +
Sbjct: 1 EYERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGL 60
Query: 210 IREADIDGDGQVNYEVYTIYCVHIMGNT 237
AD DGD ++ E + V + +
Sbjct: 61 AGIADRDGDQRITREEFVTGAVKRLRDK 88
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 151 bits (384), Expect = 5e-46
Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 18/165 (10%)
Query: 10 DGDGTITTKELGT-VMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTID 68
+ G + E+ + + L + + ++D+ + G+ D
Sbjct: 60 NETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKL-------ENKGSED 112
Query: 69 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK-LTDEEVDE 127
F EFL + E+ F D GN + E + + L E+
Sbjct: 113 FVEFLEFRLM-LCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAA 171
Query: 128 MIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIRE 172
+ +E D +G G V ++ EF + D D + +
Sbjct: 172 LFKELDKNGTGSVTFD--------EFAAWASAVKLDADGDPDNVP 208
Score = 147 bits (372), Expect = 3e-44
Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 7/158 (4%)
Query: 73 LTMMARKMKDTDSEE---EIREAFRVFDKDGNGFISAAELRH-VMTNLGEKLTDEEVDEM 128
+ + + + E E F+ FDK+ G + E+ + L V ++
Sbjct: 31 WERIRQAIPREKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDI 90
Query: 129 IREA-DIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISA 187
+ A D E G+ DF EFL + E+ F D GN +
Sbjct: 91 TKRAFDKSRTLGSKLENKGSEDFVEFLEFRLM-LCYIYDFFELTVMFDEIDASGNMLVDE 149
Query: 188 AELRHVMTNLGEK-LTDEEVDEMIREADIDGDGQVNYE 224
E + + L E+ + +E D +G G V ++
Sbjct: 150 EEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFD 187
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 149 bits (378), Expect = 2e-45
Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 23/162 (14%)
Query: 78 RKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGE---------KLTDEEVDEM 128
+ + +++ + D G+GFIS + + + + + T +E +
Sbjct: 5 TESERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRV 64
Query: 129 IREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEI------REAFRVFDKDGN 182
+ + I E + EE+ + D D +
Sbjct: 65 ADQLGLAPGV--------RISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKD 116
Query: 183 GFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
G++S E + + +G LTD++ D + +GQ++ +
Sbjct: 117 GYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRD 158
Score = 145 bits (368), Expect = 6e-44
Identities = 25/174 (14%), Positives = 54/174 (31%), Gaps = 39/174 (22%)
Query: 10 DGDGTITTKELGTVMRSLGQ---------NPTEAELQDMINEVDADENVESNLQYAELFV 60
GDG I+ ++ + + + T E + +++
Sbjct: 26 TGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLA-------------- 71
Query: 61 YHGNGTIDFPEFLTMMARKMKDTDSEEEI------REAFRVFDKDGNGFISAAELRHVMT 114
I E + EE+ + D D +G++S E + +
Sbjct: 72 --PGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQ 129
Query: 115 NLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEE 168
+G LTD++ D + +GQ++ + EFL + + +
Sbjct: 130 AVGPDLTDDKAITCFNTLDFNKNGQISRD--------EFLVTVNDFLFGLEETA 175
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 149 bits (379), Expect = 2e-45
Identities = 35/182 (19%), Positives = 63/182 (34%), Gaps = 45/182 (24%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQD-----MINEVDADENVESNLQYAELFVYHGN 64
DG I EL + G M++ +D D +
Sbjct: 44 GQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRD----------------MS 87
Query: 65 GTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 124
GT+ F EF + A R+ F FD D +G + EL+ +T +G +L+ +
Sbjct: 88 GTMGFNEFKELWAVLNG-------WRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQA 140
Query: 125 VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGF 184
V+ + + NG I F +++ + + ++FR D G
Sbjct: 141 VNSIAKRYS----------TNGKITFDDYIACCVKLRA-------LTDSFRRRDTAQQGV 183
Query: 185 IS 186
++
Sbjct: 184 VN 185
Score = 127 bits (320), Expect = 1e-36
Identities = 36/179 (20%), Positives = 67/179 (37%), Gaps = 22/179 (12%)
Query: 61 YHGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLG--- 117
+ G G +P ++ + +G I A EL+ +T G
Sbjct: 6 HPGAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAG 65
Query: 118 --EKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFR 175
+ E M+ D D +GT+ F EF + A R+ F
Sbjct: 66 GYKPFNLETCRLMVSMLDRDM--------SGTMGFNEFKELWAVLNG-------WRQHFI 110
Query: 176 VFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIM 234
FD D +G + EL+ +T +G +L+ + V+ + + +G++ ++ Y CV +
Sbjct: 111 SFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY--STNGKITFDDYIACCVKLR 167
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 147 bits (372), Expect = 1e-44
Identities = 31/161 (19%), Positives = 67/161 (41%), Gaps = 32/161 (19%)
Query: 86 EEEIREAFRVFDKDGNGFISAAEL----RHVMTNLGEKLTDEEV-----------DEMIR 130
+ +++ F +D DGNG + A+ +H+ G+ EV D + +
Sbjct: 6 SDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAK 65
Query: 131 EADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEE-------EIREAFRVFDKDGNG 183
EA + DG ++ +F+ + + + ++ + DK+ +G
Sbjct: 66 EAGVGSDG--------SLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADG 117
Query: 184 FISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
I+A E +T LG ++ E E + D +G+G+++ +
Sbjct: 118 QINADEFAAWLTALG--MSKAEAAEAFNQVDTNGNGELSLD 156
Score = 134 bits (340), Expect = 6e-40
Identities = 29/183 (15%), Positives = 65/183 (35%), Gaps = 49/183 (26%)
Query: 10 DGDGTITTKEL----GTVMRSLGQNPTEAELQD-----------MINEVDADENVESNLQ 54
DG+G + + + + G++ AE+Q + E
Sbjct: 19 DGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVG-------- 70
Query: 55 YAELFVYHGNGTIDFPEFLTMMARKMKDTDSEE-------EIREAFRVFDKDGNGFISAA 107
+G++ +F+ + + + ++ + DK+ +G I+A
Sbjct: 71 --------SDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINAD 122
Query: 108 ELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSE 167
E +T LG ++ E E + D +G+G+++ + E LT + R +
Sbjct: 123 EFAAWLTALG--MSKAEAAEAFNQVDTNGNGELSLD--------ELLTAV-RDFHFGRLD 171
Query: 168 EEI 170
E+
Sbjct: 172 VEL 174
Score = 42.4 bits (100), Expect = 3e-05
Identities = 16/128 (12%), Positives = 39/128 (30%), Gaps = 30/128 (23%)
Query: 119 KLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKD---TDSEEEIREAFR 175
+ + + + D DG+G ++ +F + E++
Sbjct: 3 AIASDRLKKRFDRWDFDGNG--------ALERADFEKEAQHIAEAFGKDAGAAEVQTLKN 54
Query: 176 VF-----------DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA--------DID 216
F +G ++ + V NL + + + ++ D +
Sbjct: 55 AFGGLFDYLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKN 114
Query: 217 GDGQVNYE 224
DGQ+N +
Sbjct: 115 ADGQINAD 122
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 146 bits (371), Expect = 1e-44
Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 45/182 (24%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQD-----MINEVDADENVESNLQYAELFVYHGN 64
DG + +EL + G N T + MI +D D
Sbjct: 11 GQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRD----------------HT 54
Query: 65 GTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 124
G + F F + A +E F D+DG+G + ELR + +G +L+ +
Sbjct: 55 GKMGFNAFKELWAALNA-------WKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQT 107
Query: 125 VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGF 184
+ +++ NG I F +++ + + + FR D G
Sbjct: 108 LTTIVKRYS----------KNGRIFFDDYVACCVKLRA-------LTDFFRKRDHLQQGS 150
Query: 185 IS 186
+
Sbjct: 151 AN 152
Score = 113 bits (286), Expect = 6e-32
Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 24/149 (16%)
Query: 93 FRVFDK--DGNGFISAAELRHVMTNLGEKLT-----DEEVDEMIREADIDGDGQVNYEGN 145
+ F +G + A EL+ +T G T E MI D D
Sbjct: 3 YTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDH--------T 54
Query: 146 GTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 205
G + F F + A +E F D+DG+G + ELR + +G +L+ +
Sbjct: 55 GKMGFNAFKELWAALNA-------WKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQT 107
Query: 206 VDEMIREADIDGDGQVNYEVYTIYCVHIM 234
+ +++ +G++ ++ Y CV +
Sbjct: 108 LTTIVKRY--SKNGRIFFDDYVACCVKLR 134
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 143 bits (364), Expect = 1e-44
Identities = 70/99 (70%), Positives = 73/99 (73%), Gaps = 9/99 (9%)
Query: 62 HGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLT 121
H + E L MKDTDSEEEIREAFRV DKDGNG+ISAAELRHVMTNLGEKLT
Sbjct: 5 HHHHHGSSGENL-YFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLT 63
Query: 122 DEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARK 160
DEEVDEMIREADIDGDGQVNYE EF+ MM K
Sbjct: 64 DEEVDEMIREADIDGDGQVNYE--------EFVQMMTAK 94
Score = 135 bits (343), Expect = 2e-41
Identities = 64/80 (80%), Positives = 66/80 (82%), Gaps = 1/80 (1%)
Query: 145 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 204
+ E L MKDTDSEEEIREAFRV DKDGNG+ISAAELRHVMTNLGEKLTDE
Sbjct: 7 HHHGSSGENL-YFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDE 65
Query: 205 EVDEMIREADIDGDGQVNYE 224
EVDEMIREADIDGDGQVNYE
Sbjct: 66 EVDEMIREADIDGDGQVNYE 85
Score = 67.3 bits (165), Expect = 6e-15
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 16/70 (22%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
DG+G I+ EL VM +LG+ T+ E+ +MI E D D G+G +++
Sbjct: 41 DGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADID----------------GDGQVNY 84
Query: 70 PEFLTMMARK 79
EF+ MM K
Sbjct: 85 EEFVQMMTAK 94
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 144 bits (365), Expect = 2e-43
Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 29/157 (18%)
Query: 87 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTD---------EEVDEMIREADIDGD 137
+ + F FD D +G + E+ + + + + + V ++
Sbjct: 36 SRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPV 95
Query: 138 GQVNYEGNGTIDFPEFLTMMARKMKDTDSEEE----------IREAFRVFDKDGNGFISA 187
+ +++ + E + V D DG+G +
Sbjct: 96 N--------GLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDV 147
Query: 188 AELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
EL+ +M + E +AD D G++
Sbjct: 148 DELKTMMKAFD--VPQEAAYTFFEKADTDKSGKLERT 182
Score = 140 bits (354), Expect = 1e-41
Identities = 25/177 (14%), Positives = 53/177 (29%), Gaps = 32/177 (18%)
Query: 10 DGDGTITTKELGTVMRSLGQN--PTEAELQDMINEVDADENVESNLQYAELFVYHGNGTI 67
D DG + E+ + Q T+ +++ M + V + +
Sbjct: 48 DSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRV---------FFLHKGVEPVNGL 98
Query: 68 DFPEFLTMMARKMKDTDSEEE----------IREAFRVFDKDGNGFISAAELRHVMTNLG 117
+++ + E + V D DG+G + EL+ +M
Sbjct: 99 LREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFD 158
Query: 118 EKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAF 174
+ E +AD D G++ E + + RK + + +
Sbjct: 159 --VPQEAAYTFFEKADTDKSGKLERT--------ELVHLF-RKFWMEPYDPQWDGVY 204
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 142 bits (360), Expect = 1e-42
Identities = 40/183 (21%), Positives = 73/183 (39%), Gaps = 51/183 (27%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+ G ++ +L + +L NP +I D G+ +DF
Sbjct: 41 NKKGYLSRMDLQQ-IGALAVNPLG---DRIIESFFPD----------------GSQRVDF 80
Query: 70 PEFLTMMARKMKDTDS----------------EEEIREAFRVFDKDGNGFISAAELRHVM 113
P F+ ++A D ++ AF+++D D +G IS E+ V+
Sbjct: 81 PGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEMLQVL 140
Query: 114 TNL-GEKLTDEE----VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEE 168
+ G ++T+E+ D ++EAD DGDG V++ EF + + D + +
Sbjct: 141 RLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFV--------EFTKSLEK--MDVEQKM 190
Query: 169 EIR 171
IR
Sbjct: 191 SIR 193
Score = 140 bits (355), Expect = 8e-42
Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 36/164 (21%)
Query: 85 SEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 141
S+ + FR D++ G++S +L+ +G + D +I DG
Sbjct: 24 SQASLLRLHHRFRALDRNKKGYLSRMDLQ----QIGALAVNPLGDRIIESFFPDG----- 74
Query: 142 YEGNGTIDFPEFLTMMARKMKDTDS----------------EEEIREAFRVFDKDGNGFI 185
+ +DFP F+ ++A D ++ AF+++D D +G I
Sbjct: 75 ---SQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKI 131
Query: 186 SAAELRHVMTNL-GEKLTDEE----VDEMIREADIDGDGQVNYE 224
S E+ V+ + G ++T+E+ D ++EAD DGDG V++
Sbjct: 132 SRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFV 175
Score = 52.1 bits (125), Expect = 2e-08
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 23/87 (26%)
Query: 9 LDGDGTITTKELGTVMRSL-GQNPTEAELQD----MINEVDADENVESNLQYAELFVYHG 63
LD DG I+ E+ V+R + G TE +L++ + E D D G
Sbjct: 125 LDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADED----------------G 168
Query: 64 NGTIDFPEFLTMMARKMKDTDSEEEIR 90
+G + F EF + + D + + IR
Sbjct: 169 DGAVSFVEFTKSLEK--MDVEQKMSIR 193
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 139 bits (352), Expect = 2e-42
Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 32/136 (23%)
Query: 26 SLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDS 85
+ +++ ++ V A+ G+ + +F ++ K S
Sbjct: 2 AAKDLLKADDIKKALDAVKAE------------------GSFNHKKFFALVGLKAM---S 40
Query: 86 EEEIREAFRVFDKDGNGFISAAELRHVMTNL---GEKLTDEEVDEMIREADIDGDGQVNY 142
++++ F+ D D +GFI EL+ V+ + G LTD E ++ AD DGDG++
Sbjct: 41 ANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGI 100
Query: 143 EGNGTIDFPEFLTMMA 158
+ EF T++
Sbjct: 101 D--------EFETLVH 108
Score = 134 bits (339), Expect = 1e-40
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 116 LGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFR 175
+ L +++ + + G+ + +F ++ K S ++++ F+
Sbjct: 3 AKDLLKADDIKKALDAVK----------AEGSFNHKKFFALVGLKAM---SANDVKKVFK 49
Query: 176 VFDKDGNGFISAAELRHVMTNL---GEKLTDEEVDEMIREADIDGDGQVNYE 224
D D +GFI EL+ V+ + G LTD E ++ AD DGDG++ +
Sbjct: 50 AIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGID 101
Score = 54.5 bits (132), Expect = 5e-10
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 19/71 (26%)
Query: 10 DGDGTITTKELGTVMRSL---GQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGT 66
D G I +EL V++S G++ T+AE + + D D G+G
Sbjct: 54 DASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKD----------------GDGK 97
Query: 67 IDFPEFLTMMA 77
I EF T++
Sbjct: 98 IGIDEFETLVH 108
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 137 bits (348), Expect = 4e-42
Identities = 57/96 (59%), Positives = 70/96 (72%), Gaps = 10/96 (10%)
Query: 82 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 141
DTD+EEE++EAF+VFDKD NG+ISA+ELRHVM NLGEKLTDEEV++MI+EAD+DGDGQVN
Sbjct: 4 DTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVN 63
Query: 142 YEGNGTIDFPEFLTMM--ARKMKDTDSEEEIREAFR 175
YE EF+ MM R + +R F
Sbjct: 64 YE--------EFVKMMMTVRGGGGGNGWSRLRRKFS 91
Score = 114 bits (288), Expect = 4e-33
Identities = 50/62 (80%), Positives = 60/62 (96%)
Query: 163 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 222
DTD+EEE++EAF+VFDKD NG+ISA+ELRHVM NLGEKLTDEEV++MI+EAD+DGDGQVN
Sbjct: 4 DTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVN 63
Query: 223 YE 224
YE
Sbjct: 64 YE 65
Score = 85.0 bits (211), Expect = 1e-21
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 18/87 (20%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
D +G I+ EL VM +LG+ T+ E++ MI E D D G+G +++
Sbjct: 21 DQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLD----------------GDGQVNY 64
Query: 70 PEFLTMM--ARKMKDTDSEEEIREAFR 94
EF+ MM R + +R F
Sbjct: 65 EEFVKMMMTVRGGGGGNGWSRLRRKFS 91
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 138 bits (350), Expect = 2e-41
Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 9/146 (6%)
Query: 86 EEEIREAFRVFDKDGNGFISAAELRHVMTNLGE--KLTDEEVDEMIREADIDGDGQVN-Y 142
++++ F D D +G I+ + + + ++ E ++ D +
Sbjct: 5 VQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAV 64
Query: 143 EGNGTIDFPEFLTMMARKMKDTDSEEEIRE----AFRVFDKDGNGFISAAELRHVMTNLG 198
G ID F+ M +K+ +++ + FR D + + IS E LG
Sbjct: 65 AGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLG 124
Query: 199 EKLTDEEVDEMIREADIDGDGQVNYE 224
L D + DG ++ E
Sbjct: 125 --LDKTMAPASFDAIDTNNDGLLSLE 148
Score = 127 bits (320), Expect = 7e-37
Identities = 29/157 (18%), Positives = 48/157 (30%), Gaps = 29/157 (18%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTE-----AELQDMINEVDADENVESNLQYAELFVYHGN 64
D DG IT + ++ + L D + V + G
Sbjct: 18 DKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVA----------GG 67
Query: 65 GTIDFPEFLTMMARKMKDTDSEEEIRE----AFRVFDKDGNGFISAAELRHVMTNLGEKL 120
ID F+ M +K+ +++ + FR D + + IS E LG L
Sbjct: 68 KGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLG--L 125
Query: 121 TDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMM 157
D + DG ++ E EF+
Sbjct: 126 DKTMAPASFDAIDTNNDGLLSLE--------EFVIAG 154
Score = 53.2 bits (128), Expect = 5e-09
Identities = 8/82 (9%), Positives = 27/82 (32%), Gaps = 11/82 (13%)
Query: 167 EEEIREAFRVFDKDGNGFISAAELRHVMTNLGE--KLTDEEVDEMIRE---------ADI 215
++++ F D D +G I+ + + + ++ E ++ +
Sbjct: 5 VQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAV 64
Query: 216 DGDGQVNYEVYTIYCVHIMGNT 237
G ++ + ++ N
Sbjct: 65 AGGKGIDETTFINSMKEMVKNP 86
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 136 bits (344), Expect = 2e-41
Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 32/131 (24%)
Query: 32 TEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIRE 91
++ I+ GT D+ F ++ K K ++ +++E
Sbjct: 7 KADDINKAISAFK------------------DPGTFDYKRFFHLVGLKGK---TDAQVKE 45
Query: 92 AFRVFDKDGNGFISAAELRHVMTNL---GEKLTDEEVDEMIREADIDGDGQVNYEGNGTI 148
F + DKD +GFI EL+ V+ G L D E ++ D D DG++ +
Sbjct: 46 VFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGAD----- 100
Query: 149 DFPEFLTMMAR 159
EF M+A+
Sbjct: 101 ---EFAKMVAQ 108
Score = 134 bits (339), Expect = 1e-40
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 16/112 (14%)
Query: 116 LGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFR 175
+ + L +++++ I GT D+ F ++ K K ++ +++E F
Sbjct: 2 MTKVLKADDINKAISAFK----------DPGTFDYKRFFHLVGLKGK---TDAQVKEVFE 48
Query: 176 VFDKDGNGFISAAELRHVMTNL---GEKLTDEEVDEMIREADIDGDGQVNYE 224
+ DKD +GFI EL+ V+ G L D E ++ D D DG++ +
Sbjct: 49 ILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGAD 100
Score = 53.3 bits (129), Expect = 1e-09
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 19/72 (26%)
Query: 10 DGDGTITTKELGTVMRSL---GQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGT 66
D G I +EL V++ G++ + E + ++ D+D +G
Sbjct: 53 DQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSD----------------HDGK 96
Query: 67 IDFPEFLTMMAR 78
I EF M+A+
Sbjct: 97 IGADEFAKMVAQ 108
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 135 bits (342), Expect = 1e-39
Identities = 29/156 (18%), Positives = 51/156 (32%), Gaps = 16/156 (10%)
Query: 82 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 141
D I + F D+D +G + EL G +L+ + M+R D D
Sbjct: 46 PLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTD------ 99
Query: 142 YEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL 201
NG I F EF+ M E F + + +G + E+ + LG +
Sbjct: 100 --FNGHISFYEFMAMYK-------FMELAYNLFVMNARARSGTLEPHEILPALQQLGFYI 150
Query: 202 TDEEVDEMIREADIDGDGQVNYEVYTIYCVHIMGNT 237
++ ++ G + + C
Sbjct: 151 -NQRTSLLLHRLFARGMAFCDLNCWIAICAFAAQTR 185
Score = 122 bits (308), Expect = 1e-34
Identities = 30/190 (15%), Positives = 55/190 (28%), Gaps = 32/190 (16%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
D GT+ EL G + M+ D D NG I F
Sbjct: 63 DRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTD----------------FNGHISF 106
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI 129
EF+ M E F + + +G + E+ + LG + ++ ++
Sbjct: 107 YEFMAMYK-------FMELAYNLFVMNARARSGTLEPHEILPALQQLGFYI-NQRTSLLL 158
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAE 189
G D ++ + A + + + I + +
Sbjct: 159 HRLFARGMAF--------CDLNCWIAICAFAAQTRSAYQMIFMNPYYGPMKPFNPMEFGK 210
Query: 190 LRHVMTNLGE 199
V+T+L E
Sbjct: 211 FLDVVTSLLE 220
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 134 bits (338), Expect = 1e-39
Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 45/182 (24%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAEL-----QDMINEVDADENVESNLQYAELFVYHGN 64
DG I EL + G + M++ +D D +
Sbjct: 13 GQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRD----------------MS 56
Query: 65 GTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 124
GT+ F EF + A R+ F FD D +G + EL+ +T +G +L +
Sbjct: 57 GTMGFNEFKELWAV-------LNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQT 109
Query: 125 VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGF 184
V+ + + G I F +++ + + ++FR D G
Sbjct: 110 VNSIAKRYSTSGK----------ITFDDYIACCVKLRA-------LTDSFRRRDSAQQGM 152
Query: 185 IS 186
++
Sbjct: 153 VN 154
Score = 108 bits (272), Expect = 6e-30
Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 23/153 (15%)
Query: 87 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEK-----LTDEEVDEMIREADIDGDGQVN 141
+ + F +G I A EL+ +T G E M+ D D
Sbjct: 2 DPLYGYFASV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDM----- 55
Query: 142 YEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL 201
+GT+ F EF + A R+ F FD D +G + EL+ +T +G +L
Sbjct: 56 ---SGTMGFNEFKELWAV-------LNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRL 105
Query: 202 TDEEVDEMIREADIDGDGQVNYEVYTIYCVHIM 234
+ V+ + + G++ ++ Y CV +
Sbjct: 106 NPQTVNSIAKRY--STSGKITFDDYIACCVKLR 136
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 129 bits (327), Expect = 7e-39
Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 32/131 (24%)
Query: 30 NPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEI 89
+A++ + A + EF + K S +++
Sbjct: 5 GLKDADVAAALAACSAA------------------DSFKHKEFFAKVGLASK---SLDDV 43
Query: 90 REAFRVFDKDGNGFISAAELRHVMTNL---GEKLTDEEVDEMIREADIDGDGQVNYEGNG 146
++AF V D+D +GFI EL+ + N LTD E + + D DGDG + +
Sbjct: 44 KKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVD--- 100
Query: 147 TIDFPEFLTMM 157
EF M+
Sbjct: 101 -----EFAAMI 106
Score = 128 bits (325), Expect = 2e-38
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 16/108 (14%)
Query: 120 LTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDK 179
L D +V + + EF + K S +++++AF V D+
Sbjct: 6 LKDADVAAALAACS----------AADSFKHKEFFAKVGLASK---SLDDVKKAFYVIDQ 52
Query: 180 DGNGFISAAELRHVMTNL---GEKLTDEEVDEMIREADIDGDGQVNYE 224
D +GFI EL+ + N LTD E + + D DGDG + +
Sbjct: 53 DKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVD 100
Score = 53.0 bits (128), Expect = 2e-09
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 19/70 (27%)
Query: 10 DGDGTITTKELGTVMRSL---GQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGT 66
D G I EL +++ + T+AE + + + D D G+G
Sbjct: 53 DKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKD----------------GDGM 96
Query: 67 IDFPEFLTMM 76
I EF M+
Sbjct: 97 IGVDEFAAMI 106
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 129 bits (326), Expect = 1e-38
Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 32/135 (23%)
Query: 26 SLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDS 85
+ +A++ + + + ++ F + K S
Sbjct: 2 AFSGILADADVAAALKACE------------------AADSFNYKAFFAKVGLTAK---S 40
Query: 86 EEEIREAFRVFDKDGNGFISAAELRHVMTNL---GEKLTDEEVDEMIREADIDGDGQVNY 142
++I++AF V D+D +GFI EL+ + LTD E ++ D DGDG +
Sbjct: 41 ADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGV 100
Query: 143 EGNGTIDFPEFLTMM 157
+ E+ ++
Sbjct: 101 D--------EWAALV 107
Score = 125 bits (315), Expect = 5e-37
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 16/112 (14%)
Query: 116 LGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFR 175
L D +V ++ + + ++ F + K S ++I++AF
Sbjct: 3 FSGILADADVAAALKACE----------AADSFNYKAFFAKVGLTAK---SADDIKKAFF 49
Query: 176 VFDKDGNGFISAAELRHVMTNL---GEKLTDEEVDEMIREADIDGDGQVNYE 224
V D+D +GFI EL+ + LTD E ++ D DGDG + +
Sbjct: 50 VIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVD 101
Score = 51.9 bits (125), Expect = 5e-09
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 19/70 (27%)
Query: 10 DGDGTITTKELGTVMRSL---GQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGT 66
D G I EL ++ + T+AE + + D+D G+G
Sbjct: 54 DKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSD----------------GDGA 97
Query: 67 IDFPEFLTMM 76
I E+ ++
Sbjct: 98 IGVDEWAALV 107
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 127 bits (321), Expect = 6e-37
Identities = 31/174 (17%), Positives = 52/174 (29%), Gaps = 35/174 (20%)
Query: 75 MMARKMKDTDSEEEIREAFRV-FDKDGNGFISAAELRHVMTNLGE--------------- 118
M A ++ D +I F +D + +G I + + +
Sbjct: 1 MAAHQLSD-FQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEAR 59
Query: 119 KLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREA----- 173
D + + AD + D + E+L M A +K + E + E
Sbjct: 60 ATLKLIWDGLRKYADENEDE--------QVTKEEWLKMWAECVKSVEKGESLPEWLTKYM 111
Query: 174 ---FRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
F V D G+ I E V + G + + D G V E
Sbjct: 112 NFMFDVNDTSGDNIIDKHEYSTVYMSYG--IPKSDCDAAFDTLSDGGKTMVTRE 163
Score = 119 bits (301), Expect = 6e-34
Identities = 26/181 (14%), Positives = 44/181 (24%), Gaps = 49/181 (27%)
Query: 10 DGDGTITTKELGTVMRSLG-------QNPTEAEL--------QDMINEVDADENVESNLQ 54
+ DG I + ++ + E + D +
Sbjct: 25 NHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADEN-------- 76
Query: 55 YAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREA--------FRVFDKDGNGFISA 106
+ + E+L M A +K + E + E F V D G+ I
Sbjct: 77 --------EDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDK 128
Query: 107 AELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDS 166
E V + G + + D G V E F + D
Sbjct: 129 HEYSTVYMSYG--IPKSDCDAAFDTLSDGGKTMVTRE--------IFARLWTEYFVSNDR 178
Query: 167 E 167
Sbjct: 179 G 179
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 124 bits (313), Expect = 1e-35
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 42/167 (25%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
GT+ E + ++ M D + G+ TIDF
Sbjct: 35 CPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTN----------------GDNTIDF 78
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL------------- 116
E++ + ++ T E +++ F+++DKD NG I EL ++ ++
Sbjct: 79 LEYVAALNLVLRGT-LEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEA 137
Query: 117 ---GEKLTDEE-VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
G+ LT EE VD + D +GDGQ++ EF+ R
Sbjct: 138 EQQGKLLTPEEVVDRIFLLVDENGDGQLSLN--------EFVEGARR 176
Score = 124 bits (313), Expect = 1e-35
Identities = 37/158 (23%), Positives = 72/158 (45%), Gaps = 27/158 (17%)
Query: 85 SEEEIREAFRVF-DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 143
+++E ++ F ++ +G + E + + + V+ M R D +G
Sbjct: 20 DAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNG------- 72
Query: 144 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL------ 197
+ TIDF E++ + ++ T E +++ F+++DKD NG I EL ++ ++
Sbjct: 73 -DNTIDFLEYVAALNLVLRGT-LEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKA 130
Query: 198 ----------GEKLTDEE-VDEMIREADIDGDGQVNYE 224
G+ LT EE VD + D +GDGQ++
Sbjct: 131 CSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLN 168
Score = 53.3 bits (128), Expect = 6e-09
Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 166 SEEEIREAFRVF-DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
+++E ++ F ++ +G + E + + + V+ M R D +GD +++
Sbjct: 20 DAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFL 79
Query: 225 VY 226
Y
Sbjct: 80 EY 81
Score = 32.9 bits (75), Expect = 0.050
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 9 LDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYH---GNG 65
D +G I +EL ++ S+ + ++ + E + +F+ G+G
Sbjct: 106 KDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVD--RIFLLVDENGDG 163
Query: 66 TIDFPEFLTMMAR 78
+ EF+ R
Sbjct: 164 QLSLNEFVEGARR 176
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 121 bits (305), Expect = 2e-35
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 32/137 (23%)
Query: 26 SLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDS 85
S+ + +++ I A + D +F M+ K K S
Sbjct: 1 SMTDLLSAEDIKKAIGAFTAA------------------DSFDHKKFFQMVGLKKK---S 39
Query: 86 EEEIREAFRVFDKDGNGFISAAELRHVMTNL---GEKLTDEEVDEMIREADIDGDGQVNY 142
+++++ F + DKD +GFI EL ++ L+ +E ++ D DGDG++
Sbjct: 40 ADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGV 99
Query: 143 EGNGTIDFPEFLTMMAR 159
E EF T++A
Sbjct: 100 E--------EFSTLVAE 108
Score = 116 bits (292), Expect = 1e-33
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 116 LGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFR 175
+ + L+ E++ + I + D +F M+ K K S +++++ F
Sbjct: 2 MTDLLSAEDIKKAIGAFTAAD----------SFDHKKFFQMVGLKKK---SADDVKKVFH 48
Query: 176 VFDKDGNGFISAAELRHVMTNL---GEKLTDEEVDEMIREADIDGDGQVNYE 224
+ DKD +GFI EL ++ L+ +E ++ D DGDG++ E
Sbjct: 49 ILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVE 100
Score = 58.1 bits (141), Expect = 2e-11
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 19/72 (26%)
Query: 10 DGDGTITTKELGTVMRSLGQNP---TEAELQDMINEVDADENVESNLQYAELFVYHGNGT 66
D G I ELG++++ + + E + ++ D D G+G
Sbjct: 53 DKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKD----------------GDGK 96
Query: 67 IDFPEFLTMMAR 78
I EF T++A
Sbjct: 97 IGVEEFSTLVAE 108
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 119 bits (301), Expect = 2e-35
Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 8/77 (10%)
Query: 84 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 143
E+++ AFR FD+DG+G I+ ELR M LG+ L EE+D MIREAD+D DG+VNYE
Sbjct: 3 AGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYE 62
Query: 144 GNGTIDFPEFLTMMARK 160
EF M+A++
Sbjct: 63 --------EFARMLAQE 71
Score = 111 bits (279), Expect = 6e-32
Identities = 33/60 (55%), Positives = 43/60 (71%)
Query: 165 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
E+++ AFR FD+DG+G I+ ELR M LG+ L EE+D MIREAD+D DG+VNYE
Sbjct: 3 AGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYE 62
Score = 71.8 bits (177), Expect = 7e-17
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 16/70 (22%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
DGDG IT EL M LGQ + EL MI E D D +G +++
Sbjct: 18 DGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVD----------------QDGRVNY 61
Query: 70 PEFLTMMARK 79
EF M+A++
Sbjct: 62 EEFARMLAQE 71
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 118 bits (298), Expect = 1e-34
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
Query: 84 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK-LTDEEVDEMIREADIDGDGQVNY 142
D EEEI AF+VFD +G+G I E + +M +GE+ LTD EV+E ++EAD DG+G ++
Sbjct: 5 DDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDI 64
Query: 143 EGNGTIDFPEFLTMMARKMKDTD 165
EF+ ++ +
Sbjct: 65 P--------EFMDLIKKSKNALK 79
Score = 103 bits (260), Expect = 4e-29
Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 165 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK-LTDEEVDEMIREADIDGDGQVNY 223
D EEEI AF+VFD +G+G I E + +M +GE+ LTD EV+E ++EAD DG+G ++
Sbjct: 5 DDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDI 64
Query: 224 E 224
Sbjct: 65 P 65
Score = 76.8 bits (190), Expect = 1e-18
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 17/76 (22%)
Query: 10 DGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADENVESNLQYAELFVYHGNGTID 68
+GDG I E +M+ +G+ P T+AE+++ + E D D GNG ID
Sbjct: 20 NGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADED----------------GNGVID 63
Query: 69 FPEFLTMMARKMKDTD 84
PEF+ ++ +
Sbjct: 64 IPEFMDLIKKSKNALK 79
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 122 bits (307), Expect = 1e-34
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 35/163 (21%)
Query: 85 SEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 141
S +I F DK NG +S + + + L D +I +G
Sbjct: 24 SHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPL----GDRIINAFFSEG----- 74
Query: 142 YEGNGTIDFPEFLTMMARKMKDTDSE---------------EEIREAFRVFDKDGNGFIS 186
++F F+ +A D+E ++ AFR++D D + IS
Sbjct: 75 ---EDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKIS 131
Query: 187 AAELRHVMT-NLGEKLTDEE----VDEMIREADIDGDGQVNYE 224
EL V+ +G ++DE+ D I+EAD DGD +++
Sbjct: 132 RDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFT 174
Score = 121 bits (306), Expect = 2e-34
Identities = 36/170 (21%), Positives = 68/170 (40%), Gaps = 48/170 (28%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+GT++ ++ + L NP +IN ++ G ++F
Sbjct: 41 GENGTLSREDFQR-IPELAINPLG---DRIINAFFSE----------------GEDQVNF 80
Query: 70 PEFLTMMARKMKDTDSE---------------EEIREAFRVFDKDGNGFISAAELRHVMT 114
F+ +A D+E ++ AFR++D D + IS EL V+
Sbjct: 81 RGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLR 140
Query: 115 -NLGEKLTDEE----VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
+G ++DE+ D I+EAD DGD +++ EF+ ++ +
Sbjct: 141 MMVGVNISDEQLGSIADRTIQEADQDGDSAISFT--------EFVKVLEK 182
Score = 42.8 bits (101), Expect = 3e-05
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 21/75 (28%)
Query: 9 LDGDGTITTKELGTVMRSL-GQNPTEAELQD----MINEVDADENVESNLQYAELFVYHG 63
LD D I+ EL V+R + G N ++ +L I E D D G
Sbjct: 124 LDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQD----------------G 167
Query: 64 NGTIDFPEFLTMMAR 78
+ I F EF+ ++ +
Sbjct: 168 DSAISFTEFVKVLEK 182
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 117 bits (296), Expect = 4e-34
Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 16/112 (14%)
Query: 116 LGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFR 175
+ + L+ ++++ + + ++ F + + K + ++I++ F
Sbjct: 3 ITDILSAKDIESALSSCQ----------AADSFNYKSFFSTVGLSSK---TPDQIKKVFG 49
Query: 176 VFDKDGNGFISAAELRHVMTNLGEK---LTDEEVDEMIREADIDGDGQVNYE 224
+ D+D +GFI EL+ + N LT E + D DGDG++ E
Sbjct: 50 ILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVE 101
Score = 117 bits (295), Expect = 6e-34
Identities = 24/135 (17%), Positives = 53/135 (39%), Gaps = 32/135 (23%)
Query: 26 SLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDS 85
++ + +++ ++ A + ++ F + + K +
Sbjct: 2 AITDILSAKDIESALSSCQAA------------------DSFNYKSFFSTVGLSSK---T 40
Query: 86 EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK---LTDEEVDEMIREADIDGDGQVNY 142
++I++ F + D+D +GFI EL+ + N LT E + D DGDG++
Sbjct: 41 PDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGV 100
Query: 143 EGNGTIDFPEFLTMM 157
E EF +++
Sbjct: 101 E--------EFQSLV 107
Score = 52.6 bits (127), Expect = 2e-09
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 19/70 (27%)
Query: 10 DGDGTITTKELGTVMRSLGQNP---TEAELQDMINEVDADENVESNLQYAELFVYHGNGT 66
D G I +EL +++ + T AE + + D D G+G
Sbjct: 54 DKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTD----------------GDGK 97
Query: 67 IDFPEFLTMM 76
I EF +++
Sbjct: 98 IGVEEFQSLV 107
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 126 bits (319), Expect = 4e-34
Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 27/168 (16%)
Query: 73 LTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL--------------GE 118
L MA K+ D +++ E FR D + +G + EL
Sbjct: 317 LLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEG 376
Query: 119 KLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFL--TMMARKMKDTDSEEEIREAFRV 176
++++D ++ D+DG +G+I++ EF+ + + S E + AF++
Sbjct: 377 STIEDQIDSLMPLLDMDG--------SGSIEYSEFIASAIDRTIL---LSRERMERAFKM 425
Query: 177 FDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
FDKDG+G IS EL + + + EE++ +I + D + DG+V++
Sbjct: 426 FDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFN 473
Score = 107 bits (269), Expect = 4e-27
Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 17/151 (11%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMIN-EVDADENVESNLQYAELFVYHGNGTID 68
+ DG + EL + + N ++ ++S + ++ G+G+I+
Sbjct: 343 NNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDM---DGSGSIE 399
Query: 69 FPEFL--TMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD 126
+ EF+ + + S E + AF++FDKDG+G IS EL + + + EE++
Sbjct: 400 YSEFIASAIDRTIL---LSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELE 456
Query: 127 EMIREADIDGDGQVNYEGNGTIDFPEFLTMM 157
+I + D + DG+ +DF EF+ M+
Sbjct: 457 SIIEQVDNNKDGE--------VDFNEFVEML 479
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 116 bits (292), Expect = 9e-34
Identities = 40/90 (44%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 75 MMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADI 134
AR + E + AF +FD DG G IS EL VM LG+ T EE+D +I E D
Sbjct: 8 AEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDE 67
Query: 135 DGDGQVNYEGNGTIDFPEFLTMMARKMKDT 164
D G+GTIDF EFL MM R+MK+
Sbjct: 68 D--------GSGTIDFEEFLVMMVRQMKED 89
Score = 97.7 bits (244), Expect = 1e-26
Identities = 40/74 (54%), Positives = 46/74 (62%), Gaps = 16/74 (21%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
DG G I+TKELGTVMR LGQNPT+ EL +I EVD D G+GTIDF
Sbjct: 32 DGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDED----------------GSGTIDF 75
Query: 70 PEFLTMMARKMKDT 83
EFL MM R+MK+
Sbjct: 76 EEFLVMMVRQMKED 89
Score = 94.6 bits (236), Expect = 2e-25
Identities = 29/69 (42%), Positives = 38/69 (55%)
Query: 156 MMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADI 215
AR + E + AF +FD DG G IS EL VM LG+ T EE+D +I E D
Sbjct: 8 AEARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDE 67
Query: 216 DGDGQVNYE 224
DG G +++E
Sbjct: 68 DGSGTIDFE 76
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 125 bits (316), Expect = 1e-33
Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 23/162 (14%)
Query: 73 LTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGE--------KLTDEE 124
+ + K+ + +E+ + F+ DK+G+G + EL L K +EE
Sbjct: 341 ILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEE 400
Query: 125 VDEMIREADIDGDGQVNYEGNGTIDFPEFL--TMMARKMKDTDSEEEIREAFRVFDKDGN 182
VD +++E D D NG I++ EF+ M + + SEE +R AF +FD D +
Sbjct: 401 VDNILKEVDFD--------KNGYIEYSEFISVCMDKQIL---FSEERLRRAFNLFDTDKS 449
Query: 183 GFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
G I+ EL ++ ++++ ++++ EAD + D ++++
Sbjct: 450 GKITKEELANLFG--LTSISEKTWNDVLGEADQNKDNMIDFD 489
Score = 105 bits (265), Expect = 1e-26
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 39/158 (24%)
Query: 10 DGDGTITTKELGTVMRSLGQNP--------TEAELQDMINEVDADENVESNLQYAELFVY 61
+GDG + KEL L E E+ +++ EVD D
Sbjct: 367 NGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFD--------------- 411
Query: 62 HGNGTIDFPEFL--TMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK 119
NG I++ EF+ M + + SEE +R AF +FD D +G I+ EL ++
Sbjct: 412 -KNGYIEYSEFISVCMDKQIL---FSEERLRRAFNLFDTDKSGKITKEELANLFG--LTS 465
Query: 120 LTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMM 157
++++ ++++ EAD + D IDF EF++MM
Sbjct: 466 ISEKTWNDVLGEADQNKDNM--------IDFDEFVSMM 495
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 124 bits (314), Expect = 2e-33
Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 19/160 (11%)
Query: 73 LTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEK--------LTDEE 124
L MA K+ + +E+ + FR DK+G+G + EL + L + + E
Sbjct: 332 LLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESE 391
Query: 125 VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGF 184
VD ++ AD D NG ID+ EF+T+ + K S++++ AF+ FD+DGNG
Sbjct: 392 VDAILGAADFD--------RNGYIDYSEFVTVAMDR-KSLLSKDKLESAFQKFDQDGNGK 442
Query: 185 ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
IS EL V + L + EMI D + DG V++E
Sbjct: 443 ISVDELASVFG--LDHLESKTWKEMISGIDSNNDGDVDFE 480
Score = 107 bits (270), Expect = 4e-27
Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 35/164 (21%)
Query: 10 DGDGTITTKELGTVMRSLGQNP--------TEAELQDMINEVDADENVESNLQYAELFVY 61
+GDG + +EL L E+E+ ++ D D
Sbjct: 358 NGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFD--------------- 402
Query: 62 HGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLT 121
NG ID+ EF+T+ + K S++++ AF+ FD+DGNG IS EL V + L
Sbjct: 403 -RNGYIDYSEFVTVAMDR-KSLLSKDKLESAFQKFDQDGNGKISVDELASVFG--LDHLE 458
Query: 122 DEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTD 165
+ EMI D + DG +DF EF M+ + + +
Sbjct: 459 SKTWKEMISGIDSNNDGD--------VDFEEFCKMIQKLCSNNE 494
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 117 bits (295), Expect = 3e-33
Identities = 35/185 (18%), Positives = 63/185 (34%), Gaps = 47/185 (25%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEA--------ELQDMINEVDADENVESNLQYAELFVY 61
D ++ EL ++ + + + M+ +D+D
Sbjct: 15 GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSD--------------- 59
Query: 62 HGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLT 121
G + F EF + K + ++ FD D +G I ++EL G L
Sbjct: 60 -TTGKLGFEEFKYLWNNIKK-------WQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLN 111
Query: 122 DEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 181
+ +IR + G +DF F++ + R + + AF+ DKDG
Sbjct: 112 EHLYSMIIRRYS---------DEGGNMDFDNFISCLVR-------LDAMFRAFKSLDKDG 155
Query: 182 NGFIS 186
G I
Sbjct: 156 TGQIQ 160
Score = 104 bits (262), Expect = 2e-28
Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 25/159 (15%)
Query: 84 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTD--------EEVDEMIREADID 135
+ + R F D + +SA EL +++ + + D + M+ D D
Sbjct: 1 EEVRQFRRLFAQLAGD-DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSD 59
Query: 136 GDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT 195
G + F EF + K + ++ FD D +G I ++EL
Sbjct: 60 T--------TGKLGFEEFKYLWNNIKK-------WQAIYKQFDVDRSGTIGSSELPGAFE 104
Query: 196 NLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIM 234
G L + +IR D G ++++ + V +
Sbjct: 105 AAGFHLNEHLYSMIIR-RYSDEGGNMDFDNFISCLVRLD 142
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 117 bits (296), Expect = 5e-33
Identities = 30/148 (20%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 85 SEEEIREAFRVF-DKDGNGFISAAELRHVMTNLG-EKLTDEEVDEMIREADIDGDGQVNY 142
+E +R F + +G + E + ++ G + ++ +D++ D +
Sbjct: 17 PTQETHVWYRTFMMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNK------ 70
Query: 143 EGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT------N 196
+G +DF EF+ + M++ E++++ F+++D DGNG I EL +
Sbjct: 71 --DGFVDFLEFIAAVNLIMQEK-MEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNG 127
Query: 197 LGEKLTDEEVDEMIREADIDGDGQVNYE 224
+E ++ + + DI+ DG++ E
Sbjct: 128 QQTLSPEEFINLVFHKIDINNDGELTLE 155
Score = 116 bits (293), Expect = 2e-32
Identities = 34/158 (21%), Positives = 63/158 (39%), Gaps = 32/158 (20%)
Query: 9 LDGDGTITTKELGTVMRSLGQNPT-EAELQDMINEVDADENVESNLQYAELFVYHGNGTI 67
G T E T++ G N + + N D + +G +
Sbjct: 31 EYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTN----------------KDGFV 74
Query: 68 DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT------NLGEKLT 121
DF EF+ + M++ E++++ F+++D DGNG I EL +
Sbjct: 75 DFLEFIAAVNLIMQEK-MEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSP 133
Query: 122 DEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
+E ++ + + DI+ DG++ E EF+ MA+
Sbjct: 134 EEFINLVFHKIDINNDGELTLE--------EFINGMAK 163
Score = 54.0 bits (130), Expect = 4e-09
Identities = 16/108 (14%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Query: 118 EKLTDEEVDEMIRE-ADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRV 176
+ + +E R G EF T++ + + + + I + +
Sbjct: 14 KAVPTQETHVWYRTFMMEYPSGLQTLH--------EFKTLLGLQGLNQKANKHIDQVYNT 65
Query: 177 FDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
FD + +GF+ E + + ++ ++++ + D DG+G ++
Sbjct: 66 FDTNKDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKN 113
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 114 bits (288), Expect = 6e-33
Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 32/135 (23%)
Query: 26 SLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDS 85
SL + +++ + + A + +F + K S
Sbjct: 1 SLTDILSPSDIAAALRDCQAP------------------DSFSPKKFFQISGMSKK---S 39
Query: 86 EEEIREAFRVFDKDGNGFISAAELRHVMTNL---GEKLTDEEVDEMIREADIDGDGQVNY 142
+++E FR+ D D +GFI EL++ + LT E + AD DGDG++
Sbjct: 40 SSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGA 99
Query: 143 EGNGTIDFPEFLTMM 157
E EF M+
Sbjct: 100 E--------EFQEMV 106
Score = 114 bits (287), Expect = 9e-33
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 16/112 (14%)
Query: 116 LGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFR 175
L + L+ ++ +R+ + +F + K S +++E FR
Sbjct: 2 LTDILSPSDIAAALRDCQ----------APDSFSPKKFFQISGMSKK---SSSQLKEIFR 48
Query: 176 VFDKDGNGFISAAELRHVMTNL---GEKLTDEEVDEMIREADIDGDGQVNYE 224
+ D D +GFI EL++ + LT E + AD DGDG++ E
Sbjct: 49 ILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAE 100
Score = 58.8 bits (143), Expect = 1e-11
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 19/70 (27%)
Query: 10 DGDGTITTKELGTVMRSLGQNP---TEAELQDMINEVDADENVESNLQYAELFVYHGNGT 66
D G I EL ++ T +E + + D D G+G
Sbjct: 53 DQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHD----------------GDGK 96
Query: 67 IDFPEFLTMM 76
I EF M+
Sbjct: 97 IGAEEFQEMV 106
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 122 bits (309), Expect = 1e-32
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 26/165 (15%)
Query: 73 LTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT-----------NLGEKLT 121
L M K+ D +E+ F DK+G+G + AEL L
Sbjct: 321 LLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAV 380
Query: 122 DEEVDEMIREADIDGDGQVNYEGNGTIDFPEFL--TMMARKMKDTDSEEEIREAFRVFDK 179
+ EVD+++ D D NG I++ EF+ M + + S E + AFR+FD
Sbjct: 381 EHEVDQVLDAVDFD--------KNGYIEYSEFVTVAMDRKTL---LSRERLERAFRMFDS 429
Query: 180 DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
D +G IS+ EL + + E ++ E D + DG+V+++
Sbjct: 430 DNSGKISSTELATIFG--VSDVDSETWKSVLSEVDKNNDGEVDFD 472
Score = 102 bits (257), Expect = 2e-25
Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 42/161 (26%)
Query: 10 DGDGTITTKELGTVMRS-----------LGQNPTEAELQDMINEVDADENVESNLQYAEL 58
+GDG + EL + L + E E+ +++ VD D
Sbjct: 347 NGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFD------------ 394
Query: 59 FVYHGNGTIDFPEFL--TMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL 116
NG I++ EF+ M + + S E + AFR+FD D +G IS+ EL +
Sbjct: 395 ----KNGYIEYSEFVTVAMDRKTL---LSRERLERAFRMFDSDNSGKISSTELATIFG-- 445
Query: 117 GEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMM 157
+ E ++ E D + DG+ +DF EF M+
Sbjct: 446 VSDVDSETWKSVLSEVDKNNDGE--------VDFDEFQQML 478
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 112 bits (282), Expect = 3e-32
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 17/99 (17%)
Query: 62 HGNGTIDFPEFLTMMARKMKDTDSEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGE 118
H +G ID + + M + SEEEI +E F++ D D +G I+ EL+ + +G
Sbjct: 1 HSSGHIDDDD------KHMAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGS 54
Query: 119 KLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMM 157
+L + E+ +++ ADID +GTID+ EF+
Sbjct: 55 ELMESEIKDLMDAADID--------KSGTIDYGEFIAAT 85
Score = 101 bits (255), Expect = 4e-28
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 144 GNGTIDFPEFLTMMARKMKDTDSEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEK 200
+G ID + + M + SEEEI +E F++ D D +G I+ EL+ + +G +
Sbjct: 2 SSGHIDDDD------KHMAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSE 55
Query: 201 LTDEEVDEMIREADIDGDGQVNYE 224
L + E+ +++ ADID G ++Y
Sbjct: 56 LMESEIKDLMDAADIDKSGTIDYG 79
Score = 83.0 bits (206), Expect = 6e-21
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 16/67 (23%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
D GTIT EL ++ +G E+E++D+++ D D +GTID+
Sbjct: 35 DNSGTITFDELKDGLKRVGSELMESEIKDLMDAADID----------------KSGTIDY 78
Query: 70 PEFLTMM 76
EF+
Sbjct: 79 GEFIAAT 85
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 115 bits (290), Expect = 3e-32
Identities = 37/195 (18%), Positives = 77/195 (39%), Gaps = 36/195 (18%)
Query: 9 LDGDGTITTKELGTVMRSLGQNPTEAEL-QDMINEVDADENVESNLQYAELFVYHGNGTI 67
G +T E +P+ + + M D + +G I
Sbjct: 26 ECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFN----------------KDGYI 69
Query: 68 DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL------GEKLT 121
DF E++ ++ +K ++++R F+++D DGNG I EL +++ + E +T
Sbjct: 70 DFMEYVAALSLVLKGK-VDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMT 128
Query: 122 DEE-VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARK---MKDTDSEEEIREAFRVF 177
EE + + + DI+GDG+++ E EF+ + + + ++ ++
Sbjct: 129 AEEFTNMVFDKIDINGDGELSLE--------EFMEGVQKDEVLLDILTRSLDLTHIVKLI 180
Query: 178 DKDGNGFISAAELRH 192
DG + E
Sbjct: 181 QNDGKNPHAPEEAEE 195
Score = 115 bits (289), Expect = 4e-32
Identities = 34/149 (22%), Positives = 72/149 (48%), Gaps = 18/149 (12%)
Query: 85 SEEEIREAFRVF-DKDGNGFISAAELRHVMTNLGEKLTDEE-VDEMIREADIDGDGQVNY 142
S E + ++ F + +G ++ E + + + V++M D +
Sbjct: 12 SATECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNK------ 65
Query: 143 EGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL----- 197
+G IDF E++ ++ +K ++++R F+++D DGNG I EL +++ +
Sbjct: 66 --DGYIDFMEYVAALSLVLKGK-VDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINR 122
Query: 198 -GEKLTDEE-VDEMIREADIDGDGQVNYE 224
E +T EE + + + DI+GDG+++ E
Sbjct: 123 CNEAMTAEEFTNMVFDKIDINGDGELSLE 151
Score = 52.5 bits (126), Expect = 1e-08
Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 118 EKLTDEEVDEMIRE-ADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRV 176
E+L+ E + ++ GQ+ EF K + + + + F
Sbjct: 9 EELSATECHQWYKKFMTECPSGQLTLY--------EFKQFFGLKNLSPSANKYVEQMFET 60
Query: 177 FDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
FD + +G+I E ++ + + D+++ + D+DG+G ++
Sbjct: 61 FDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRG 108
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 115 bits (288), Expect = 4e-32
Identities = 24/155 (15%), Positives = 54/155 (34%), Gaps = 18/155 (11%)
Query: 86 EEEIREAFRVF-DKDGNGFISAAELRHVMTNLGEKL-------TDEEVDEMIREADIDGD 137
+++I+ F F D + +G I + +MT E + + + + D
Sbjct: 7 KQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLK 66
Query: 138 GQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREA--------FRVFDKDGNGFISAAE 189
G+ + + + + E+L M + + S ++ F+ D G+G + E
Sbjct: 67 GRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEE 126
Query: 190 LRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
++ N L +V + G +
Sbjct: 127 FQNYCKNFQ--LQCADVPAVYNVITDGGKVTFDLN 159
Score = 105 bits (263), Expect = 2e-28
Identities = 20/165 (12%), Positives = 49/165 (29%), Gaps = 19/165 (11%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+ DG+I + +M + + + A E + + + + +
Sbjct: 21 NHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADI-NKDDVVSW 79
Query: 70 PEFLTMMARKMKDTDSEEEIREA--------FRVFDKDGNGFISAAELRHVMTNLGEKLT 121
E+L M + + S ++ F+ D G+G + E ++ N L
Sbjct: 80 EEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQ--LQ 137
Query: 122 DEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDS 166
+V + G + + + R + +
Sbjct: 138 CADVPAVYNVITDGGKVTFDLN--------RYKELYYRLLTSPAA 174
Score = 42.6 bits (100), Expect = 3e-05
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 16/87 (18%)
Query: 167 EEEIREAFRVF-DKDGNGFISAAELRHVMTNLGE---------------KLTDEEVDEMI 210
+++I+ F F D + +G I + +MT E ++E ++
Sbjct: 7 KQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLK 66
Query: 211 READIDGDGQVNYEVYTIYCVHIMGNT 237
ADI+ D V++E Y +
Sbjct: 67 GRADINKDDVVSWEEYLAMWEKTIATC 93
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 111 bits (280), Expect = 5e-32
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 77 ARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 136
+K+ + ++E +EAF++FDKD + ++A EL VM LG T +++ E++++ D D
Sbjct: 4 QKKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKD- 62
Query: 137 DGQVNYEGNGTIDFPEFLTMMARKMKDTDS 166
+G D FLT+M ++ DS
Sbjct: 63 -------NSGKFDQETFLTIMLEYGQEVDS 85
Score = 98.1 bits (245), Expect = 7e-27
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 16/76 (21%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
D D +T +ELGTVMR+LG NPT+ ++ +++ + D D +G D
Sbjct: 26 DNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKD----------------NSGKFDQ 69
Query: 70 PEFLTMMARKMKDTDS 85
FLT+M ++ DS
Sbjct: 70 ETFLTIMLEYGQEVDS 85
Score = 85.8 bits (213), Expect = 5e-22
Identities = 22/67 (32%), Positives = 42/67 (62%)
Query: 158 ARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 217
+K+ + ++E +EAF++FDKD + ++A EL VM LG T +++ E++++ D D
Sbjct: 4 QKKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDN 63
Query: 218 DGQVNYE 224
G+ + E
Sbjct: 64 SGKFDQE 70
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 110 bits (277), Expect = 1e-31
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 19/93 (20%)
Query: 76 MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL------TDEEVDEMI 129
MA K+ + E+ AF+ D +G+G+++A EL+ M L E ++I
Sbjct: 1 MACKV-----KAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLI 55
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMARKMK 162
+ AD + DG+++ E EFL A +
Sbjct: 56 KMADKNSDGKISKE--------EFLNANAELLC 80
Score = 100 bits (251), Expect = 8e-28
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 11/74 (14%)
Query: 157 MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL------TDEEVDEMI 210
MA K+ + E+ AF+ D +G+G+++A EL+ M L E ++I
Sbjct: 1 MACKV-----KAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLI 55
Query: 211 READIDGDGQVNYE 224
+ AD + DG+++ E
Sbjct: 56 KMADKNSDGKISKE 69
Score = 63.8 bits (156), Expect = 9e-14
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 22/78 (28%)
Query: 10 DGDGTITTKELGTVMRSLG------QNPTEAELQDMINEVDADENVESNLQYAELFVYHG 63
+GDG +T EL T M +L ++ + +I D +
Sbjct: 19 NGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKN----------------S 62
Query: 64 NGTIDFPEFLTMMARKMK 81
+G I EFL A +
Sbjct: 63 DGKISKEEFLNANAELLC 80
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 109 bits (275), Expect = 2e-31
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 86 EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGN 145
+++ F+ FD +G+G IS +EL + LG + +EV M+ E D DGD
Sbjct: 2 ADDMERIFKRFDTNGDGKISLSELTDALRTLGST-SADEVQRMMAEIDTDGD-------- 52
Query: 146 GTIDFPEFLTMMARKMKDTDSEEEIREAF 174
G IDF EF++ +++ + F
Sbjct: 53 GFIDFNEFISFCNANP---GLMKDVAKVF 78
Score = 92.6 bits (231), Expect = 7e-25
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 167 EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
+++ F+ FD +G+G IS +EL + LG + +EV M+ E D DGDG +++
Sbjct: 2 ADDMERIFKRFDTNGDGKISLSELTDALRTLGST-SADEVQRMMAEIDTDGDGFIDFN 58
Score = 80.3 bits (199), Expect = 4e-20
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 20/84 (23%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+GDG I+ EL +R+LG + E+Q M+ E+D D G+G IDF
Sbjct: 15 NGDGKISLSELTDALRTLGSTSAD-EVQRMMAEIDTD----------------GDGFIDF 57
Query: 70 PEFLTMMARKMKDTDSEEEIREAF 93
EF++ +++ + F
Sbjct: 58 NEFISFCNANP---GLMKDVAKVF 78
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 108 bits (272), Expect = 6e-31
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 88 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGT 147
+ F FDK+ +G +S E R V T E++ + E D+DG+ G
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGN--------GE 53
Query: 148 IDFPEFLTMMARKM 161
++ EF + + + +
Sbjct: 54 LNADEFTSCIEKML 67
Score = 97.2 bits (243), Expect = 1e-26
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 169 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
+ F FDK+ +G +S E R V T E++ + E D+DG+G++N +
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNAD 57
Score = 80.2 bits (199), Expect = 4e-20
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 16/71 (22%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+ DG ++ E V + T+ ++ E+D D GNG ++
Sbjct: 13 NKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVD----------------GNGELNA 56
Query: 70 PEFLTMMARKM 80
EF + + + +
Sbjct: 57 DEFTSCIEKML 67
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 108 bits (272), Expect = 2e-30
Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 23/125 (18%)
Query: 36 LQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRV 95
+ D+++ D ++ T + +F S ++++ FR
Sbjct: 2 ITDILSAEDIAAALQE---------CQDPDTFEPQKFFQTSGLSKM---SASQVKDIFRF 49
Query: 96 FDKDGNGFISAAELRHVMTNL---GEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPE 152
D D +G++ EL++ + +LT+ E ++ AD DGDG++ + E
Sbjct: 50 IDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGAD--------E 101
Query: 153 FLTMM 157
F M+
Sbjct: 102 FQEMV 106
Score = 106 bits (267), Expect = 9e-30
Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 16/112 (14%)
Query: 116 LGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFR 175
+ + L+ E++ ++E T + +F S ++++ FR
Sbjct: 2 ITDILSAEDIAAALQECQ----------DPDTFEPQKFFQTSGLSKM---SASQVKDIFR 48
Query: 176 VFDKDGNGFISAAELRHVMTNL---GEKLTDEEVDEMIREADIDGDGQVNYE 224
D D +G++ EL++ + +LT+ E ++ AD DGDG++ +
Sbjct: 49 FIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGAD 100
Score = 59.6 bits (145), Expect = 6e-12
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 19/70 (27%)
Query: 10 DGDGTITTKELGTVMRSLGQNP---TEAELQDMINEVDADENVESNLQYAELFVYHGNGT 66
D G + EL ++ + TE+E + +++ D D G+G
Sbjct: 53 DQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADND----------------GDGK 96
Query: 67 IDFPEFLTMM 76
I EF M+
Sbjct: 97 IGADEFQEMV 106
Score = 32.6 bits (75), Expect = 0.031
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 63 GNGTIDFPEFLTMMARKMKDTD--SEEEIREAFRVFDKDGNGFISAAELRHVMT 114
+G +D E + + D +E E + D DG+G I A E + ++
Sbjct: 54 QSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEMVH 107
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 108 bits (272), Expect = 4e-30
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 84 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 143
+ +E + FD + G I L+ +M LG T E+ +MI E
Sbjct: 47 EKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVS------ 100
Query: 144 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG 183
TI + +F+ MM K + + +F+ N
Sbjct: 101 --DTISYRDFVNMMLGKR------SAVLKLVMMFEGKANE 132
Score = 100 bits (251), Expect = 5e-27
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 22/93 (23%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+ +G I L +M LG T E++ MI+EV + TI +
Sbjct: 62 NNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGG----------------VSDTISY 105
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNG 102
+F+ MM K + + +F+ N
Sbjct: 106 RDFVNMMLGKR------SAVLKLVMMFEGKANE 132
Score = 83.0 bits (205), Expect = 3e-20
Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 7/109 (6%)
Query: 116 LGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFR 175
L + + +++ ++N E + + + +E +
Sbjct: 5 LSNRFQGGKAFGILKARQERRLAEINREFLCDQKYSDE-------ENLPEKLTAFKEKYM 57
Query: 176 VFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
FD + G I L+ +M LG T E+ +MI E ++Y
Sbjct: 58 EFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYR 106
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 106 bits (266), Expect = 5e-30
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 84 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 143
+ ++EI+EAF +FD + G I EL+ M LG + E+ E++ E D +
Sbjct: 4 EQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDRE-------- 55
Query: 144 GNGTIDFPEFLTMMARKMKDTD 165
GNG I F +FL +M K+K+ D
Sbjct: 56 GNGYIGFDDFLDIMTEKIKNRD 77
Score = 96.0 bits (240), Expect = 4e-26
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 16/75 (21%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+ G+I EL MR+LG + + E+ +++NE D + GNG I F
Sbjct: 19 NKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDRE----------------GNGYIGF 62
Query: 70 PEFLTMMARKMKDTD 84
+FL +M K+K+ D
Sbjct: 63 DDFLDIMTEKIKNRD 77
Score = 83.3 bits (207), Expect = 3e-21
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 165 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
+ ++EI+EAF +FD + G I EL+ M LG + E+ E++ E D +G+G + ++
Sbjct: 4 EQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFD 63
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 105 bits (263), Expect = 1e-29
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 80 MKDTDSEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 136
M D+ ++I F+ FD +G+G IS++EL + LG +T +EV M+ E D DG
Sbjct: 1 MAAEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGS-VTPDEVRRMMAEIDTDG 59
Query: 137 DGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAF 174
D G I F EF +++ + F
Sbjct: 60 D--------GFISFDEFTDFARANR---GLVKDVSKIF 86
Score = 88.1 bits (219), Expect = 6e-23
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 20/84 (23%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+GDG I++ ELG +++LG + T E++ M+ E+D D G+G I F
Sbjct: 23 NGDGKISSSELGDALKTLG-SVTPDEVRRMMAEIDTD----------------GDGFISF 65
Query: 70 PEFLTMMARKMKDTDSEEEIREAF 93
EF +++ + F
Sbjct: 66 DEFTDFARANR---GLVKDVSKIF 86
Score = 86.2 bits (214), Expect = 4e-22
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 161 MKDTDSEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 217
M D+ ++I F+ FD +G+G IS++EL + LG +T +EV M+ E D DG
Sbjct: 1 MAAEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGS-VTPDEVRRMMAEIDTDG 59
Query: 218 DGQVNYE 224
DG ++++
Sbjct: 60 DGFISFD 66
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 106 bits (266), Expect = 1e-28
Identities = 30/153 (19%), Positives = 61/153 (39%), Gaps = 22/153 (14%)
Query: 85 SEEEIREAFRVF-----DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 139
+ EE+ + +F +G I E + + + D + D+ +G
Sbjct: 32 TVEEVEALYELFKKLSSSIIDDGLIHKEEFQLAL-FRNRNRRNLFADRIFDVFDVKRNG- 89
Query: 140 VNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT---- 195
I+F EF+ + E+++ AF+++D GFI EL+ ++
Sbjct: 90 -------VIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLH 142
Query: 196 ----NLGEKLTDEEVDEMIREADIDGDGQVNYE 224
L E + + VD+ +AD DG+++ +
Sbjct: 143 ESELVLSEDMIEVMVDKAFVQADRKNDGKIDID 175
Score = 101 bits (254), Expect = 8e-27
Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 33/159 (20%)
Query: 9 LDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTID 68
+ DG I +E + +N + + D NG I+
Sbjct: 50 IIDDGLIHKEEFQLAL-FRNRNRRNLFADRIFDVFDVK----------------RNGVIE 92
Query: 69 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT--------NLGEKL 120
F EF+ + E+++ AF+++D GFI EL+ ++ L E +
Sbjct: 93 FGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDM 152
Query: 121 TDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
+ VD+ +AD DG+++ + E+ ++
Sbjct: 153 IEVMVDKAFVQADRKNDGKIDID--------EWKDFVSL 183
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 102 bits (256), Expect = 3e-28
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 67 IDFPEFLTMMARKMKDTDSE-EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEV 125
I+ +D S+ E +E + FD +GNG I L+ ++ LG T E+
Sbjct: 11 INKQFLDDPKYSSDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLEL 70
Query: 126 DEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKD 163
++I E T +P+FL MM K
Sbjct: 71 KKLIGEVSSGSG--------ETFSYPDFLRMMLGKRSA 100
Score = 89.3 bits (222), Expect = 3e-23
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 16/73 (21%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+G+G I L ++ LG T EL+ +I EV + T +
Sbjct: 44 NGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSG----------------SGETFSY 87
Query: 70 PEFLTMMARKMKD 82
P+FL MM K
Sbjct: 88 PDFLRMMLGKRSA 100
Score = 86.3 bits (214), Expect = 5e-22
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 148 IDFPEFLTMMARKMKDTDSE-EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEV 206
I+ +D S+ E +E + FD +GNG I L+ ++ LG T E+
Sbjct: 11 INKQFLDDPKYSSDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLEL 70
Query: 207 DEMIREADIDGDGQVNYE 224
++I E +Y
Sbjct: 71 KKLIGEVSSGSGETFSYP 88
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 103 bits (258), Expect = 3e-27
Identities = 28/159 (17%), Positives = 63/159 (39%), Gaps = 36/159 (22%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+ +++ + + L NP + + + + ++ F
Sbjct: 71 SLRAQVPFEQILS-LPELKANPFKERICRVFSTSP------------------AKDSLSF 111
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL-----GEKLTDEE 124
+FL +++ + + AFR+FD D +G ++ +L ++ L +L+ E
Sbjct: 112 EDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASE 171
Query: 125 ----VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
+D ++ E+DID DG +N EF +++R
Sbjct: 172 MKQLIDNILEESDIDRDGTINLS--------EFQHVISR 202
Score = 100 bits (250), Expect = 3e-26
Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 31/160 (19%)
Query: 85 SEEEIREAFRVF-----------DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 133
+++EI A R F + + ++ + L E + + +
Sbjct: 46 TKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS-LPELKANPFKERICRVFSTSP 104
Query: 134 IDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHV 193
++ F +FL +++ + + AFR+FD D +G ++ +L +
Sbjct: 105 ----------AKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRL 154
Query: 194 MTNL-----GEKLTDEE----VDEMIREADIDGDGQVNYE 224
+ L +L+ E +D ++ E+DID DG +N
Sbjct: 155 VNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLS 194
Score = 35.6 bits (82), Expect = 0.007
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 21/77 (27%)
Query: 9 LDGDGTITTKELGTVMRSL-----GQNPTEAELQDMINEV--DADENVESNLQYAELFVY 61
D DGT+ ++L ++ L + +E++ +I+ + ++D +
Sbjct: 140 FDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDID------------- 186
Query: 62 HGNGTIDFPEFLTMMAR 78
+GTI+ EF +++R
Sbjct: 187 -RDGTINLSEFQHVISR 202
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 100 bits (251), Expect = 1e-26
Identities = 28/159 (17%), Positives = 63/159 (39%), Gaps = 36/159 (22%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+ +++ + + L NP + + + + ++ F
Sbjct: 40 SLRAQVPFEQILS-LPELKANPFKERICRVFSTSP------------------AKDSLSF 80
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL-----GEKLTDEE 124
+FL +++ + + AFR+FD D +G ++ +L ++ L +L+ E
Sbjct: 81 EDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASE 140
Query: 125 ----VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
+D ++ E+DID DG +N EF +++R
Sbjct: 141 MKQLIDNILEESDIDRDGTINLS--------EFQHVISR 171
Score = 99.1 bits (247), Expect = 6e-26
Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 31/160 (19%)
Query: 85 SEEEIREAFRVF-----------DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 133
+++EI A R F + + ++ + L E + + +
Sbjct: 15 TKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS-LPELKANPFKERICRVFSTSP 73
Query: 134 IDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHV 193
++ F +FL +++ + + AFR+FD D +G ++ +L +
Sbjct: 74 ----------AKDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRL 123
Query: 194 MTNL-----GEKLTDEE----VDEMIREADIDGDGQVNYE 224
+ L +L+ E +D ++ E+DID DG +N
Sbjct: 124 VNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLS 163
Score = 36.3 bits (84), Expect = 0.004
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 21/77 (27%)
Query: 9 LDGDGTITTKELGTVMRSL-----GQNPTEAELQDMINEV--DADENVESNLQYAELFVY 61
D DGT+ ++L ++ L + +E++ +I+ + ++D +
Sbjct: 109 FDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDID------------- 155
Query: 62 HGNGTIDFPEFLTMMAR 78
+GTI+ EF +++R
Sbjct: 156 -RDGTINLSEFQHVISR 171
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 96.5 bits (241), Expect = 2e-26
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 12/83 (14%)
Query: 84 DSEEEIREAFRVFD-KDGN-GFISAAELRHVMTNLGEKLTD--EEVDEMIREADIDGDGQ 139
S EEI+ AF VF K+G+ IS EL+ VM LG L +DEMI E D +GDG+
Sbjct: 2 KSPEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGE 61
Query: 140 VNYEGNGTIDFPEFLTMMARKMK 162
V++E EFL MM + +
Sbjct: 62 VSFE--------EFLVMMKKISQ 76
Score = 87.7 bits (218), Expect = 6e-23
Identities = 30/64 (46%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 165 DSEEEIREAFRVFD-KDGN-GFISAAELRHVMTNLGEKLTD--EEVDEMIREADIDGDGQ 220
S EEI+ AF VF K+G+ IS EL+ VM LG L +DEMI E D +GDG+
Sbjct: 2 KSPEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGE 61
Query: 221 VNYE 224
V++E
Sbjct: 62 VSFE 65
Score = 61.1 bits (149), Expect = 7e-13
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 19/75 (25%)
Query: 10 DGD-GTITTKELGTVMRSLGQN--PTEAELQDMINEVDADENVESNLQYAELFVYHGNGT 66
+GD I+ +EL VM++LG + + L +MI EVD + G+G
Sbjct: 18 EGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKN----------------GDGE 61
Query: 67 IDFPEFLTMMARKMK 81
+ F EFL MM + +
Sbjct: 62 VSFEEFLVMMKKISQ 76
Score = 32.6 bits (75), Expect = 0.017
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 64 NGTIDFPEFLTMMARK-MKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL 116
I E +M + E DK+G+G +S E +M +
Sbjct: 21 PNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMMKKI 74
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 96.4 bits (240), Expect = 8e-26
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 71 EFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 130
+ L + + + T I + F FD IS E R + + LTDE+ D +
Sbjct: 10 DILARLHKAV--TSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWN 67
Query: 131 EADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTD 165
E ++ G++ Y +FL+ + + T
Sbjct: 68 EMPVNAKGRLKYP--------DFLSRFSSETAATP 94
Score = 89.5 bits (222), Expect = 3e-23
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 152 EFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 211
+ L + + + T I + F FD IS E R + + LTDE+ D +
Sbjct: 10 DILARLHKAV--TSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWN 67
Query: 212 EADIDGDGQVNYE 224
E ++ G++ Y
Sbjct: 68 EMPVNAKGRLKYP 80
Score = 56.3 bits (136), Expect = 9e-11
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 16/75 (21%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
TI+ +E + Q T+ + + NE+ + G + +
Sbjct: 36 MKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVN----------------AKGRLKY 79
Query: 70 PEFLTMMARKMKDTD 84
P+FL+ + + T
Sbjct: 80 PDFLSRFSSETAATP 94
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 98.7 bits (246), Expect = 2e-25
Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 22/153 (14%)
Query: 85 SEEEIREAFRVF-----DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQ 139
S EI + +F +G I+ E + + +K D + D +G
Sbjct: 43 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKE-SLFADRVFDLFDTKHNG- 100
Query: 140 VNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT---- 195
+ F EF ++ + +++I +F+++D GFI E++ ++
Sbjct: 101 -------ILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLA 153
Query: 196 ----NLGEKLTDEEVDEMIREADIDGDGQVNYE 224
NL + + ++ +D+ EAD DG+++ E
Sbjct: 154 ESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKE 186
Score = 91.0 bits (226), Expect = 2e-22
Identities = 28/159 (17%), Positives = 63/159 (39%), Gaps = 33/159 (20%)
Query: 9 LDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTID 68
+ DG I +E + + + + + D NG +
Sbjct: 61 VIDDGLINKEEFQLALFKTNKKESL-FADRVFDLFDTK----------------HNGILG 103
Query: 69 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT--------NLGEKL 120
F EF ++ + +++I +F+++D GFI E++ ++ NL + +
Sbjct: 104 FEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTV 163
Query: 121 TDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
++ +D+ EAD DG+++ E E+ +++ R
Sbjct: 164 IEDIIDKTFEEADTKHDGKIDKE--------EWRSLVLR 194
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 96.1 bits (239), Expect = 3e-25
Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 13/112 (11%)
Query: 71 EFLTMMARKMKDTDSE--EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 128
+FL + E + + FD +GNG I L+ ++ LG T E+ +
Sbjct: 30 QFLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRL 89
Query: 129 IREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKD 180
IRE + T + +FL MM K + + + +K+
Sbjct: 90 IREVSSGSE--------ETFSYSDFLRMMLGKR---SAILRMILMYEEKNKE 130
Score = 85.7 bits (212), Expect = 3e-21
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 152 EFLTMMARKMKDTDSE--EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 209
+FL + E + + FD +GNG I L+ ++ LG T E+ +
Sbjct: 30 QFLDDPKYSNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRL 89
Query: 210 IREADIDGDGQVNYE 224
IRE + +Y
Sbjct: 90 IREVSSGSEETFSYS 104
Score = 76.9 bits (189), Expect = 5e-18
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 19/90 (21%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+G+G I L ++ LG T EL+ +I EV + T +
Sbjct: 60 NGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSG----------------SEETFSY 103
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKD 99
+FL MM K + + + +K+
Sbjct: 104 SDFLRMMLGKR---SAILRMILMYEEKNKE 130
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 90.7 bits (225), Expect = 1e-22
Identities = 31/163 (19%), Positives = 68/163 (41%), Gaps = 36/163 (22%)
Query: 9 LDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTID 68
G ++ +E + + ++ + + F +G+GTID
Sbjct: 37 DCPSGHLSMEEFKKIYGNFFPYGDASKFAEHV---------------FRTFDANGDGTID 81
Query: 69 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLG----------- 117
F EF+ ++ + E++++ AF ++D DGNG+IS AE+ ++ +
Sbjct: 82 FREFIIALSVTSRGK-LEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPE 140
Query: 118 -EKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
E ++ +++ R+ D + DG+++ E EF+
Sbjct: 141 DESTPEKRTEKIFRQMDTNRDGKLSLE--------EFIRGAKS 175
Score = 77.6 bits (191), Expect = 8e-18
Identities = 34/174 (19%), Positives = 66/174 (37%), Gaps = 57/174 (32%)
Query: 63 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTD 122
+G + EF + D+ + FR FD +
Sbjct: 39 PSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDAN----------------------- 75
Query: 123 EEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGN 182
G+GTIDF EF+ ++ + E++++ AF ++D DGN
Sbjct: 76 ---------------------GDGTIDFREFIIALSVTSRGK-LEQKLKWAFSMYDLDGN 113
Query: 183 GFISAAELRHVMTNLG------------EKLTDEEVDEMIREADIDGDGQVNYE 224
G+IS AE+ ++ + E ++ +++ R+ D + DG+++ E
Sbjct: 114 GYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLE 167
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 85.9 bits (213), Expect = 4e-22
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 10/80 (12%)
Query: 82 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 141
D + +R F D + +G + E R + T L + + + + + D D DG
Sbjct: 22 DGEELARLRSVFAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQRLDADRDGA-- 77
Query: 142 YEGNGTIDFPEFLTMMARKM 161
I F EF +
Sbjct: 78 ------ITFQEFARGFLGSL 91
Score = 81.6 bits (202), Expect = 2e-20
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 163 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 222
D + +R F D + +G + E R + T L + + + + + D D DG +
Sbjct: 22 DGEELARLRSVFAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQRLDADRDGAIT 79
Query: 223 YE 224
++
Sbjct: 80 FQ 81
Score = 59.3 bits (144), Expect = 6e-12
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 18/71 (25%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+ G + +E + L P A+ + + +DAD +G I F
Sbjct: 39 NRSGRLEREEFRALCTELRVRP--ADAEAVFQRLDAD----------------RDGAITF 80
Query: 70 PEFLTMMARKM 80
EF +
Sbjct: 81 QEFARGFLGSL 91
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 88.0 bits (218), Expect = 1e-21
Identities = 27/153 (17%), Positives = 64/153 (41%), Gaps = 21/153 (13%)
Query: 85 SEEEIREAFRVFDK-DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 143
EI++ + F + +G ++ + + + E+ + + +
Sbjct: 23 DRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTV-------FDKD 75
Query: 144 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT-------- 195
NG I F EF+T+++ + T EE++ AF ++D + +G+I+ E+ ++
Sbjct: 76 NNGFIHFEEFITVLSTTSRGT-LEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGS 134
Query: 196 ----NLGEKLTDEEVDEMIREADIDGDGQVNYE 224
N E + V ++ + D + DG + +
Sbjct: 135 MVTLNEDEATPEMRVKKIFKLMDKNEDGYITLD 167
Score = 74.5 bits (183), Expect = 1e-16
Identities = 27/188 (14%), Positives = 68/188 (36%), Gaps = 49/188 (26%)
Query: 9 LDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTID 68
G + ++ + + + + + + +F NG I
Sbjct: 37 DCPSGQLAREDFVKIYKQFFPFGSPEDFANHL---------------FTVFDKDNNGFIH 81
Query: 69 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 128
F EF+T+++ + T EE++ AF ++D + +G+I+ E+ ++ ++
Sbjct: 82 FEEFITVLSTTSRGT-LEEKLSWAFELYDLNHDGYITFDEMLTIVASV------------ 128
Query: 129 IREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAA 188
+ +M+ + E +++ F++ DK+ +G+I+
Sbjct: 129 ---------------------YKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLD 167
Query: 189 ELRHVMTN 196
E R
Sbjct: 168 EFREGSKV 175
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 85.8 bits (213), Expect = 2e-19
Identities = 25/165 (15%), Positives = 44/165 (26%), Gaps = 33/165 (20%)
Query: 73 LTMMARKMKDTDSEEEI-REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIRE 131
LT+M + ++EI + ++ + NG K+ D + E
Sbjct: 304 LTVMLATRNFSVRKQEIIKVTEQLIEAISNGDF----------ESYTKMCDPGMTAFEPE 353
Query: 132 ADIDGDGQVNYEGNGTIDFPEFL--TMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAE 189
A + +DF F + +R K I D + I+
Sbjct: 354 ALGNL--------VEGLDFHRFYFENLWSRNSKPV--HTTILNPHIHLMGDESACIAYIR 403
Query: 190 LRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIM 234
+ + G T DG+ VH
Sbjct: 404 ITQYLDAGGIPRT---AQSEETRVWHRRDGK-------WQIVHFH 438
Score = 71.2 bits (175), Expect = 2e-14
Identities = 12/97 (12%), Positives = 22/97 (22%), Gaps = 18/97 (18%)
Query: 63 GNGTIDFPEFL--TMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL 120
+DF F + +R K I D + I+ + + G
Sbjct: 358 LVEGLDFHRFYFENLWSRNSKPV--HTTILNPHIHLMGDESACIAYIRITQYLDAGGIPR 415
Query: 121 TDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMM 157
T DG+ + +
Sbjct: 416 T---AQSEETRVWHRRDGKW-----------QIVHFH 438
Score = 30.0 bits (68), Expect = 0.63
Identities = 6/69 (8%), Positives = 13/69 (18%), Gaps = 22/69 (31%)
Query: 8 LLDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTI 67
+ D I + + + G Q V +G
Sbjct: 392 MGDESACIAYIRITQYLDAGGI---PRTAQSEETRVWHR----------------RDGKW 432
Query: 68 DFPEFLTMM 76
+ +
Sbjct: 433 ---QIVHFH 438
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 81.8 bits (202), Expect = 2e-19
Identities = 29/154 (18%), Positives = 66/154 (42%), Gaps = 23/154 (14%)
Query: 85 SEEEIREAFRVFDK-DGNGFISAAELRHVMTNLGEKLTDEE-VDEMIREADIDGDGQVNY 142
++E+++ ++ F K +G ++ +E + + + + D D +G
Sbjct: 23 DKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNG---- 78
Query: 143 EGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT------- 195
IDF EF+ ++ + + +++ AF+++D D NG IS E+ ++
Sbjct: 79 ----YIDFKEFICALSVTSR-GELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVG 133
Query: 196 -----NLGEKLTDEEVDEMIREADIDGDGQVNYE 224
E ++ V+++ D + DGQ+ E
Sbjct: 134 SMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLE 167
Score = 78.7 bits (194), Expect = 3e-18
Identities = 35/184 (19%), Positives = 65/184 (35%), Gaps = 45/184 (24%)
Query: 9 LDGDGTITTKELGTVMRSLGQNPTEAELQDMI-NEVDADENVESNLQYAELFVYHGNGTI 67
G + E + + + + + N DAD NG I
Sbjct: 37 DCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDAD----------------KNGYI 80
Query: 68 DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT------------N 115
DF EF+ ++ + + +++ AF+++D D NG IS E+ ++
Sbjct: 81 DFKEFICALSVTSR-GELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLP 139
Query: 116 LGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFR 175
E ++ V+++ D + DGQ+ E EF R + I A
Sbjct: 140 EDEDTPEKRVNKIFNMMDKNKDGQLTLE--------EFCEGSKR-------DPTIVSALS 184
Query: 176 VFDK 179
++D
Sbjct: 185 LYDG 188
Score = 38.3 bits (89), Expect = 9e-04
Identities = 8/74 (10%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 166 SEEEIREAFRVFDK-DGNGFISAAELRHVMTNLGEKLTDEE-VDEMIREADIDGDGQVNY 223
++E+++ ++ F K +G ++ +E + + + + D D +G +++
Sbjct: 23 DKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDF 82
Query: 224 EVYTIYCVHIMGNT 237
+ +
Sbjct: 83 KEFICALSVTSRGE 96
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 79.9 bits (197), Expect = 2e-18
Identities = 26/154 (16%), Positives = 68/154 (44%), Gaps = 23/154 (14%)
Query: 85 SEEEIREAFRVF-DKDGNGFISAAELRHVMTNLGEKLTDEE-VDEMIREADIDGDGQVNY 142
+++E++ +R F ++ +G ++ + + + + + D D +G V++
Sbjct: 62 TKKELQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSF 121
Query: 143 EGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT------- 195
E +F+ ++ ++ T +E++ AF ++D + +G+I+ E+ +M
Sbjct: 122 E--------DFIKGLSILLRGT-VQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMG 172
Query: 196 -----NLGEKLTDEEVDEMIREADIDGDGQVNYE 224
L E + V+ ++ D + DG V +
Sbjct: 173 KCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTID 206
Score = 75.7 bits (186), Expect = 8e-17
Identities = 27/182 (14%), Positives = 62/182 (34%), Gaps = 43/182 (23%)
Query: 9 LDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTID 68
G + + + + F NG +
Sbjct: 76 ECPSGVVNEETFKEIYSQFFPQGDSTTYAHFL---------------FNAFDTDHNGAVS 120
Query: 69 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT------------NL 116
F +F+ ++ ++ T +E++ AF ++D + +G+I+ E+ +M L
Sbjct: 121 FEDFIKGLSILLRGT-VQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVL 179
Query: 117 GEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRV 176
E + V+ ++ D + DG V + EF+ + +E I + ++
Sbjct: 180 KEDAPRQHVETFFQKMDKNKDGVVTID--------EFIESCQK-------DENIMRSMQL 224
Query: 177 FD 178
F+
Sbjct: 225 FE 226
Score = 33.3 bits (76), Expect = 0.047
Identities = 10/74 (13%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 166 SEEEIREAFRVF-DKDGNGFISAAELRHVMTNLGEKLTDEE-VDEMIREADIDGDGQVNY 223
+++E++ +R F ++ +G ++ + + + + + D D +G V++
Sbjct: 62 TKKELQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSF 121
Query: 224 EVYTIYCVHIMGNT 237
E + ++ T
Sbjct: 122 EDFIKGLSILLRGT 135
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 79.1 bits (195), Expect = 2e-18
Identities = 26/153 (16%), Positives = 68/153 (44%), Gaps = 21/153 (13%)
Query: 85 SEEEIREAFRVF-DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 143
+E+E+++ ++ F +G + AA + + + + +
Sbjct: 23 TEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNV-------FDEN 75
Query: 144 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLT- 202
+G I+F EF+ ++ + T +E++R AF+++D D +G+I+ E+ ++ + + +
Sbjct: 76 KDGRIEFSEFIQALSVTSRGT-LDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGN 134
Query: 203 -----------DEEVDEMIREADIDGDGQVNYE 224
++ VD + D + DG++ +
Sbjct: 135 TVELPEEENTPEKRVDRIFAMMDKNADGKLTLQ 167
Score = 78.3 bits (193), Expect = 4e-18
Identities = 28/182 (15%), Positives = 66/182 (36%), Gaps = 43/182 (23%)
Query: 9 LDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTID 68
G + + + + + V F + +G I+
Sbjct: 37 DCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNV---------------FDENKDGRIE 81
Query: 69 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLT------- 121
F EF+ ++ + T +E++R AF+++D D +G+I+ E+ ++ + + +
Sbjct: 82 FSEFIQALSVTSRGT-LDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPE 140
Query: 122 -----DEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRV 176
++ VD + D + DG++ + EF + I +A +
Sbjct: 141 EENTPEKRVDRIFAMMDKNADGKLTLQ--------EFQEGSKA-------DPSIVQALSL 185
Query: 177 FD 178
+D
Sbjct: 186 YD 187
Score = 57.9 bits (140), Expect = 1e-10
Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 13/142 (9%)
Query: 63 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTD 122
+G +D F + + D + F VFD++ +G I +E ++ D
Sbjct: 39 PSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSEFIQALSVTSRGTLD 98
Query: 123 EEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMM--------ARKMKDTDSEEEIREAF 174
E++ + D+D DG + + + + + ++ E+ + F
Sbjct: 99 EKLRWAFKLYDLDNDGYITRN-----EMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIF 153
Query: 175 RVFDKDGNGFISAAELRHVMTN 196
+ DK+ +G ++ E +
Sbjct: 154 AMMDKNADGKLTLQEFQEGSKA 175
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 75.4 bits (185), Expect = 8e-17
Identities = 28/156 (17%), Positives = 63/156 (40%), Gaps = 25/156 (16%)
Query: 85 SEEEIREAFRVF-DKDGNGFISAAELRHVMTNLGEKLTDEE-VDEMIREADIDGDGQVNY 142
SEEE+ ++ F G I+ + + + + + R D + DG
Sbjct: 31 SEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDG---- 86
Query: 143 EGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLT 202
T+DF E++ + + +++ AF ++D DGNG IS E+ ++ + + +T
Sbjct: 87 ----TLDFKEYVIALHMTTAGK-TNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMIT 141
Query: 203 DEE--------------VDEMIREADIDGDGQVNYE 224
E+ +++ + + D ++ +
Sbjct: 142 PEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEK 177
Score = 67.7 bits (165), Expect = 5e-14
Identities = 24/165 (14%), Positives = 58/165 (35%), Gaps = 38/165 (23%)
Query: 9 LDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTID 68
G IT ++ ++ + + F + +GT+D
Sbjct: 45 DCPTGRITQQQFQSIYAKFFPDTDPKAYAQHV---------------FRSFDSNLDGTLD 89
Query: 69 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE---- 124
F E++ + + +++ AF ++D DGNG IS E+ ++ + + +T E+
Sbjct: 90 FKEYVIALHMTTAGK-TNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLL 148
Query: 125 ----------VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
+++ + + D ++ + EF+
Sbjct: 149 PDDENTPEKRAEKIWKYFGKNDDDKLTEK--------EFIEGTLA 185
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 71.4 bits (176), Expect = 9e-17
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 89 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTI 148
F+ D +G+G +S E++ ++ ++ + + + D D GNG I
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDAD--------GNGEI 53
Query: 149 DFPEFLTMMA 158
D EF
Sbjct: 54 DQNEFAKFYG 63
Score = 66.8 bits (164), Expect = 5e-15
Identities = 10/55 (18%), Positives = 27/55 (49%)
Query: 170 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 224
F+ D +G+G +S E++ ++ ++ + + + D DG+G+++
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQN 56
Score = 63.7 bits (156), Expect = 5e-14
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 125 VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGF 184
+ + +E D++GDG + + E + K + +E+ ++ F+ D DGNG
Sbjct: 2 AEALFKEIDVNGDG--------AVSYEEVKAFV-SKKRAIKNEQLLQLIFKSIDADGNGE 52
Query: 185 ISAAELRHVMTNL 197
I E ++
Sbjct: 53 IDQNEFAKFYGSI 65
Score = 62.2 bits (152), Expect = 2e-13
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Query: 36 LQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRV 95
+ + E+D + G+G + + E + K + +E+ ++ F+
Sbjct: 2 AEALFKEIDVN----------------GDGAVSYEEVKAFV-SKKRAIKNEQLLQLIFKS 44
Query: 96 FDKDGNGFISAAELRHVMTNL 116
D DGNG I E ++
Sbjct: 45 IDADGNGEIDQNEFAKFYGSI 65
Score = 54.9 bits (133), Expect = 1e-10
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 16/68 (23%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+GDG ++ +E+ + E LQ + +DAD GNG ID
Sbjct: 12 NGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDAD----------------GNGEIDQ 55
Query: 70 PEFLTMMA 77
EF
Sbjct: 56 NEFAKFYG 63
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 73.7 bits (181), Expect = 2e-16
Identities = 25/154 (16%), Positives = 62/154 (40%), Gaps = 23/154 (14%)
Query: 85 SEEEIREAFRVF-DKDGNGFISAAELRHVMTNLGEKLTDEE-VDEMIREADIDGDGQVNY 142
++ E++ +R F ++ +G ++ + + + D G V +
Sbjct: 16 TKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKF 75
Query: 143 EGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVM-------- 194
E +F+T ++ ++ T E++R F ++D + +G+I+ E+ ++
Sbjct: 76 E--------DFVTALSILLRGT-VHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMG 126
Query: 195 TNLGEKLTDEE----VDEMIREADIDGDGQVNYE 224
L ++ VD ++ D + DG V +
Sbjct: 127 KYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLD 160
Score = 67.9 bits (166), Expect = 2e-14
Identities = 26/182 (14%), Positives = 62/182 (34%), Gaps = 43/182 (23%)
Query: 9 LDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTID 68
G + + + + + + F G++
Sbjct: 30 EXPSGVVNEETFKQIYAQFFPHGDASTYAHYL---------------FNAFDTTQTGSVK 74
Query: 69 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVM--------TNLGEKL 120
F +F+T ++ ++ T E++R F ++D + +G+I+ E+ ++ L
Sbjct: 75 FEDFVTALSILLRGT-VHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVL 133
Query: 121 TDEE----VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRV 176
++ VD ++ D + DG V + EFL ++ I + ++
Sbjct: 134 KEDTPRQHVDVFFQKMDKNKDGIVTLD--------EFLESXQE-------DDNIMRSLQL 178
Query: 177 FD 178
F
Sbjct: 179 FQ 180
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 72.3 bits (177), Expect = 1e-15
Identities = 24/154 (15%), Positives = 62/154 (40%), Gaps = 23/154 (14%)
Query: 85 SEEEIREAFRVF-DKDGNGFISAAELRHVMTNLGEKLTDEE-VDEMIREADIDGDGQVNY 142
++ E++ +R F ++ +G ++ + + + D G
Sbjct: 49 TKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTG---- 104
Query: 143 EGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT------- 195
++ F +F+T ++ ++ T E++R F ++D + +G+I+ E+ ++
Sbjct: 105 ----SVKFEDFVTALSILLRGT-VHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMG 159
Query: 196 -NLGEKLTDEE----VDEMIREADIDGDGQVNYE 224
L ++ VD ++ D + DG V +
Sbjct: 160 KYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLD 193
Score = 43.8 bits (103), Expect = 1e-05
Identities = 24/182 (13%), Positives = 54/182 (29%), Gaps = 80/182 (43%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
G++ F
Sbjct: 101 TQTGSV----------------------------------------------------KF 108
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT--------NLGEKLT 121
+F+T ++ ++ T E++R F ++D + +G+I+ E+ ++ L
Sbjct: 109 EDFVTALSILLRGT-VHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLK 167
Query: 122 DEE----VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVF 177
++ VD ++ D + DG V + EFL ++ I + ++F
Sbjct: 168 EDTPRQHVDVFFQKMDKNKDGIVTLD--------EFLESCQE-------DDNIMRSLQLF 212
Query: 178 DK 179
Sbjct: 213 QN 214
Score = 31.5 bits (71), Expect = 0.19
Identities = 13/90 (14%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 9 LDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTID 68
++ DG I +E+ +++++ ++ E ++V+ Q + + +G +
Sbjct: 136 INKDGYINKEEMMDIVKAIYDM-MGKYTYPVLKEDTPRQHVDVFFQKMDK---NKDGIVT 191
Query: 69 FPEFLTMMARKMKDTDSEEEIREAFRVFDK 98
EFL ++ I + ++F
Sbjct: 192 LDEFLESCQE-------DDNIMRSLQLFQN 214
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 70.7 bits (173), Expect = 2e-15
Identities = 27/183 (14%), Positives = 56/183 (30%), Gaps = 38/183 (20%)
Query: 7 SLLDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGT 66
L+ I +L ++ ++ +++ L NG
Sbjct: 13 GLVPRGSDIDATQLQGLLNQELLTGPPGDMF----------SLDECRSLVALMELKVNGR 62
Query: 67 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTN----LGEKLTD 122
+D EF + R + + F+ G + +++L + N G ++
Sbjct: 63 LDQEEFARLWKRLVH-------YQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISR 114
Query: 123 EEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGN 182
E + + + G + FP + + R E + + FR KDG
Sbjct: 115 ELLHLVTLRYS---------DSVGRVSFPSLVCFLMR-------LEAMAKTFRNLSKDGK 158
Query: 183 GFI 185
G
Sbjct: 159 GLY 161
Score = 60.7 bits (147), Expect = 1e-11
Identities = 20/161 (12%), Positives = 52/161 (32%), Gaps = 30/161 (18%)
Query: 85 SEEEIREAF-RVFDKDGNGFISAAELRHVMTNLGEK------LTDEEVDEMIREADIDGD 137
S + + I A +L+ ++ + +E ++ ++
Sbjct: 3 SSHHHHHHSSGLVPRGS--DIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKV- 59
Query: 138 GQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTN- 196
NG +D EF + R + + F+ G + +++L + N
Sbjct: 60 -------NGRLDQEEFARLWKRLVH-------YQHVFQKVQ-TSPGVLLSSDLWKAIENT 104
Query: 197 ---LGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIM 234
G ++ E + + D G+V++ + + +
Sbjct: 105 DFLRGIFISRELLHLVTLRYS-DSVGRVSFPSLVCFLMRLE 144
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 68.4 bits (166), Expect = 2e-13
Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 75 MMARKMKDTDSE--EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 132
++ R K E E R +F FD+ G + + R + ++G + + E ++
Sbjct: 711 ILTRDAKGISQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIV 770
Query: 133 DIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRH 192
D + G V ++ F+ M+R+ DTD+ +++ +F++ +I+ ELR
Sbjct: 771 DPNRMGVVTFQ--------AFIDFMSRETADTDTADQVMASFKILA-GDKNYITVDELRR 821
Query: 193 VMT 195
+
Sbjct: 822 ELP 824
Score = 49.9 bits (118), Expect = 3e-07
Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 17/103 (16%)
Query: 12 DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPE 71
G + ++ + S+G N EAE +++ VD + G + F
Sbjct: 739 TGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPN----------------RMGVVTFQA 782
Query: 72 FLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMT 114
F+ M+R+ DTD+ +++ +F++ +I+ ELR +
Sbjct: 783 FIDFMSRETADTDTADQVMASFKILA-GDKNYITVDELRRELP 824
Score = 47.6 bits (112), Expect = 2e-06
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 156 MMARKMKDTDSE--EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 213
++ R K E E R +F FD+ G + + R + ++G + + E ++
Sbjct: 711 ILTRDAKGISQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIV 770
Query: 214 DIDGDGQVNYEVYTIYCVHIMGNT 237
D + G V ++ + + +T
Sbjct: 771 DPNRMGVVTFQAFIDFMSRETADT 794
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 64.2 bits (156), Expect = 3e-13
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 21/100 (21%)
Query: 71 EFLTMMARKMKDTDSEEEIR-EAFRVFDKDGNGFISAAELRHVMTNL--------GEKLT 121
E L + K + S +E++ F++ D DGN + EL +T++ ++
Sbjct: 51 EHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMS 110
Query: 122 DEE----VDEMIREADIDGDGQVNYEGNGTIDFPEFLTMM 157
++E +D ++R+ D + DG ID+ EF +
Sbjct: 111 EDELINIIDGVLRDDDKNNDGY--------IDYAEFAKSL 142
Score = 61.9 bits (150), Expect = 2e-12
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 152 EFLTMMARKMKDTDSEEEIR-EAFRVFDKDGNGFISAAELRHVMTNL--------GEKLT 202
E L + K + S +E++ F++ D DGN + EL +T++ ++
Sbjct: 51 EHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMS 110
Query: 203 DEE----VDEMIREADIDGDGQVNYE 224
++E +D ++R+ D + DG ++Y
Sbjct: 111 EDELINIIDGVLRDDDKNNDGYIDYA 136
Score = 34.6 bits (79), Expect = 0.011
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 24/78 (30%)
Query: 9 LDGDGTITTKELGTVMRSL--------GQNPTEAELQDMINEV--DADENVESNLQYAEL 58
DG+ + EL T + + +E EL ++I+ V D D+N
Sbjct: 79 YDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKN---------- 128
Query: 59 FVYHGNGTIDFPEFLTMM 76
+G ID+ EF +
Sbjct: 129 ----NDGYIDYAEFAKSL 142
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 65.8 bits (160), Expect = 5e-13
Identities = 31/174 (17%), Positives = 58/174 (33%), Gaps = 57/174 (32%)
Query: 63 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTD 122
G +D F + ++ D+ F FD D
Sbjct: 105 PTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDAD----------------------- 141
Query: 123 EEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGN 182
GNG I F +F+ ++ ++ T E+++ AF ++D + +
Sbjct: 142 ---------------------GNGAIHFEDFVVGLSILLRGT-VHEKLKWAFNLYDINKD 179
Query: 183 GFISAAELRHVMTN------------LGEKLTDEEVDEMIREADIDGDGQVNYE 224
G I+ E+ +M + L E E V+ ++ D + DG V +
Sbjct: 180 GCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTID 233
Score = 35.8 bits (82), Expect = 0.008
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 27/117 (23%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
DG+G I ++ + L + +L+ N D + +G I
Sbjct: 141 DGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDIN----------------KDGCITK 184
Query: 70 PEFLTMM-----------ARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTN 115
E L +M +++ E + F+ D++ +G ++ E
Sbjct: 185 EEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQK 241
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 65.2 bits (158), Expect = 2e-12
Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 27/195 (13%)
Query: 48 NVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREAF-RVFDKDGNGFISA 106
++ S L ++ L + + +++ E + R+ F ++ D +SA
Sbjct: 692 DLISWLSFSVLGKLAAAIEHHHHHHMHYSNIEANESEEERQFRKLFVQLAGDDME--VSA 749
Query: 107 AELRHVMTNLGEKLTD--------EEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMA 158
EL +++ + + D + M+ D D G + F EF +
Sbjct: 750 TELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDT--------TGKLGFEEFKYLWN 801
Query: 159 RKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGD 218
K + ++ F+ D +G I + EL G L +IR D
Sbjct: 802 NIKK-------WQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIRRYS-DET 853
Query: 219 GQVNYEVYTIYCVHI 233
G ++++ + V +
Sbjct: 854 GNMDFDNFISCLVRL 868
Score = 64.4 bits (156), Expect = 5e-12
Identities = 34/185 (18%), Positives = 60/185 (32%), Gaps = 47/185 (25%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAEL--------QDMINEVDADENVESNLQYAELFVY 61
D ++ EL ++ + + + + M+ +D+D
Sbjct: 742 GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSD--------------- 786
Query: 62 HGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLT 121
G + F EF + K + ++ F+ D +G I + EL G L
Sbjct: 787 -TTGKLGFEEFKYLWNNIKK-------WQGIYKRFETDRSGTIGSNELPGAFEAAGFHLN 838
Query: 122 DEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 181
+IR + G +DF F++ + R AFR DK+G
Sbjct: 839 QHIYSMIIRRYS---------DETGNMDFDNFISCLVRLDAMFR-------AFRSLDKNG 882
Query: 182 NGFIS 186
G I
Sbjct: 883 TGQIQ 887
Score = 60.6 bits (146), Expect = 7e-11
Identities = 37/202 (18%), Positives = 67/202 (33%), Gaps = 36/202 (17%)
Query: 29 QNPTEAELQDMINEVDADE--------NVESNLQYAELFVYHGNGTIDFPEFLTMMARKM 80
+ ELQ ++N + + ++ES L GNG + EF + R
Sbjct: 548 MEISVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIR 607
Query: 81 KDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV 140
FR FD D +G +SA E+R + G KL + ++
Sbjct: 608 N-------YLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVAR--------- 651
Query: 141 NY-EGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFIS---AAELRHVMTN 196
+ + IDF F+ + R F+ D + G I + L +
Sbjct: 652 -FADDELIIDFDNFVRCLVRLEILFK-------IFKQLDPENTGTIQLDLISWLSFSVLG 703
Query: 197 LGEKLTDEEVDEMIREADIDGD 218
+ + ++I+ +
Sbjct: 704 KLAAAIEHHHHHHMHYSNIEAN 725
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 56.6 bits (137), Expect = 5e-11
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 13/76 (17%)
Query: 85 SEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 141
S E E F DKD +GF+S E+R + G L + + D G+
Sbjct: 5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTG--LPSTLLAHIWSLCDTKDCGK-- 60
Query: 142 YEGNGTIDFPEFLTMM 157
+ +F
Sbjct: 61 ------LSKDQFALAF 70
Score = 52.4 bits (126), Expect = 2e-09
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 166 SEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 222
S E E F DKD +GF+S E+R + G L + + D G+++
Sbjct: 5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTG--LPSTLLAHIWSLCDTKDCGKLS 62
Query: 223 YE 224
+
Sbjct: 63 KD 64
Score = 32.8 bits (75), Expect = 0.018
Identities = 9/67 (13%), Positives = 17/67 (25%), Gaps = 18/67 (26%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
D DG ++ E+ + G L + + D G +
Sbjct: 22 DMDGFVSGLEVREIFLKTGL--PSTLLAHIWSLCDTK----------------DCGKLSK 63
Query: 70 PEFLTMM 76
+F
Sbjct: 64 DQFALAF 70
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 57.1 bits (138), Expect = 5e-11
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 85 SEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 141
+ R+ F DK +G ++ + R ++ L ++ + +DID D
Sbjct: 9 PQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSS--LPQAQLASIWNLSDIDQD---- 62
Query: 142 YEGNGTIDFPEFLTMM 157
G + EF+ M
Sbjct: 63 ----GKLTAEEFILAM 74
Score = 52.5 bits (126), Expect = 3e-09
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 166 SEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 222
+ R+ F DK +G ++ + R ++ L ++ + +DID DG++
Sbjct: 9 PQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSS--LPQAQLASIWNLSDIDQDGKLT 66
Query: 223 YE 224
E
Sbjct: 67 AE 68
Score = 35.9 bits (83), Expect = 0.002
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 18/67 (26%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
G +T + T++ +A+L + N D D +G +
Sbjct: 26 TMSGHLTGPQARTILMQSSL--PQAQLASIWNLSDID----------------QDGKLTA 67
Query: 70 PEFLTMM 76
EF+ M
Sbjct: 68 EEFILAM 74
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 60.6 bits (146), Expect = 7e-11
Identities = 33/161 (20%), Positives = 62/161 (38%), Gaps = 33/161 (20%)
Query: 35 ELQDMINEVDADE--------NVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSE 86
ELQ ++ V A ++E+ ++ G+G + EF + + K
Sbjct: 552 ELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQK----- 606
Query: 87 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMI-READIDGDGQVNYEGN 145
++ +R D D +G +++ E+R + G KL + ++ R AD
Sbjct: 607 --YQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFAD----------DE 654
Query: 146 GTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFIS 186
IDF F+ + R E + + F+ D + G I
Sbjct: 655 LIIDFDNFVRCLVRL-------EILFKIFKQLDPENTGTIQ 688
Score = 54.8 bits (131), Expect = 8e-09
Identities = 26/186 (13%), Positives = 65/186 (34%), Gaps = 8/186 (4%)
Query: 48 NVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAA 107
+ + + E + + + + + ISA
Sbjct: 492 HKNGDFCIRVFSEKKADYQTVDDEIEANIEEIEANEEDIGDGFRRLFAQLAGEDAEISAF 551
Query: 108 ELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSE 167
EL+ ++ + K D + D E ++ +G+G + EF + + K
Sbjct: 552 ELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQK----- 606
Query: 168 EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYT 227
++ +R D D +G +++ E+R + G KL + ++ D + ++++ +
Sbjct: 607 --YQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVARFA-DDELIIDFDNFV 663
Query: 228 IYCVHI 233
V +
Sbjct: 664 RCLVRL 669
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 55.9 bits (135), Expect = 1e-10
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 85 SEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 141
+EE+ FR D + FIS + ++ T L+ E+ + +D D DG
Sbjct: 17 TEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSK--LSIPELSYIWELSDADCDGA-- 72
Query: 142 YEGNGTIDFPEFLTMM 157
+ PEF
Sbjct: 73 ------LTLPEFCAAF 82
Score = 51.7 bits (124), Expect = 6e-09
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 166 SEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 222
+EE+ FR D + FIS + ++ T L+ E+ + +D D DG +
Sbjct: 17 TEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSK--LSIPELSYIWELSDADCDGALT 74
Query: 223 YE 224
Sbjct: 75 LP 76
Score = 33.2 bits (76), Expect = 0.016
Identities = 11/67 (16%), Positives = 16/67 (23%), Gaps = 18/67 (26%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
D I+ + EL + DAD +G +
Sbjct: 34 DPSSFISGSVAKNFFTKSKLS--IPELSYIWELSDAD----------------CDGALTL 75
Query: 70 PEFLTMM 76
PEF
Sbjct: 76 PEFCAAF 82
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 55.1 bits (133), Expect = 2e-10
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 13/76 (17%)
Query: 85 SEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 141
++E+ F+ D NGFI + + T L E+ + +D D D
Sbjct: 4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK--LPILELSHIWELSDFDKD---- 57
Query: 142 YEGNGTIDFPEFLTMM 157
G + EF
Sbjct: 58 ----GALTLDEFCAAF 69
Score = 50.1 bits (120), Expect = 1e-08
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 166 SEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 222
++E+ F+ D NGFI + + T L E+ + +D D DG +
Sbjct: 4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK--LPILELSHIWELSDFDKDGALT 61
Query: 223 YE 224
+
Sbjct: 62 LD 63
Score = 33.2 bits (76), Expect = 0.013
Identities = 10/67 (14%), Positives = 14/67 (20%), Gaps = 18/67 (26%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
D +G I EL + D D +G +
Sbjct: 21 DLNGFIPGSAAKEFFTKSKLP--ILELSHIWELSDFD----------------KDGALTL 62
Query: 70 PEFLTMM 76
EF
Sbjct: 63 DEFCAAF 69
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 49.7 bits (119), Expect = 1e-08
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 87 EEIREAFRVFD-KDGNGF-ISAAELRHVM-TNLGEKLTDEE-VDEMIREADIDGDGQVNY 142
E++ F + K+G+ +S EL+ ++ L +D++ +E D +GDG+V
Sbjct: 7 AELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEV-- 64
Query: 143 EGNGTIDFPEFLTMMAR 159
F EF ++ +
Sbjct: 65 ------SFEEFQVLVKK 75
Score = 43.5 bits (103), Expect = 2e-06
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 168 EEIREAFRVFD-KDGNGF-ISAAELRHVM-TNLGEKLTDEE-VDEMIREADIDGDGQVNY 223
E++ F + K+G+ +S EL+ ++ L +D++ +E D +GDG+V++
Sbjct: 7 AELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSF 66
Query: 224 E 224
E
Sbjct: 67 E 67
Score = 30.8 bits (70), Expect = 0.078
Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 19/75 (25%)
Query: 7 SLLDGD-GTITTKELGTVMRSLGQNPT--EAELQDMINEVDADENVESNLQYAELFVYHG 63
+ +GD ++ +EL ++++ + L D+ E+D + G
Sbjct: 17 AAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKN----------------G 60
Query: 64 NGTIDFPEFLTMMAR 78
+G + F EF ++ +
Sbjct: 61 DGEVSFEEFQVLVKK 75
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 50.2 bits (120), Expect = 1e-08
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 13/82 (15%)
Query: 80 MKDTDSEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 136
+ T + +R + G + A + + G L D + ++ AD DG
Sbjct: 1 LSLTQLSSGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSG--LPDLILGKIWDLADTDG 58
Query: 137 DGQVNYEGNGTIDFPEFLTMMA 158
G + EF +
Sbjct: 59 KGV--------LSKQEFFVALR 72
Score = 47.1 bits (112), Expect = 2e-07
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 161 MKDTDSEEEI---REAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 217
+ T + +R + G + A + + G L D + ++ AD DG
Sbjct: 1 LSLTQLSSGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSG--LPDLILGKIWDLADTDG 58
Query: 218 DGQVNYE 224
G ++ +
Sbjct: 59 KGVLSKQ 65
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 49.0 bits (117), Expect = 4e-08
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 14/83 (16%)
Query: 83 TDSEEEIREAFRVFDK----DGNGF-ISAAELRHVM-TNLGEKLTDEEVDEMIREADIDG 136
T+ E+ + V+ K GN + +L+ ++ T + + + D +E DI+
Sbjct: 3 TELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINT 62
Query: 137 DGQVNYEGNGTIDFPEFLTMMAR 159
DG ++F EFL ++ +
Sbjct: 63 DGA--------VNFQEFLILVIK 77
Score = 43.6 bits (103), Expect = 3e-06
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 164 TDSEEEIREAFRVFDK----DGNGF-ISAAELRHVM-TNLGEKLTDEEVDEMIREADIDG 217
T+ E+ + V+ K GN + +L+ ++ T + + + D +E DI+
Sbjct: 3 TELEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINT 62
Query: 218 DGQVNYE 224
DG VN++
Sbjct: 63 DGAVNFQ 69
Score = 30.1 bits (68), Expect = 0.16
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 18/74 (24%)
Query: 7 SLLDGDG-TITTKELGTVMRS-LGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGN 64
SL+ G+ + +L ++ + Q + E+D + +
Sbjct: 20 SLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDIN----------------TD 63
Query: 65 GTIDFPEFLTMMAR 78
G ++F EFL ++ +
Sbjct: 64 GAVNFQEFLILVIK 77
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 48.7 bits (116), Expect = 6e-08
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 17/93 (18%)
Query: 74 TMMARKMKDTDSEEEIREAFRVF----DKDGNGF-ISAAELRHVM-TNLGEKLTDEE-VD 126
M A + T+ EE I F ++G +S E + ++ L L D +D
Sbjct: 8 LMAAEPL--TELEESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLD 65
Query: 127 EMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
E ++ D++ D + + F E+ ++
Sbjct: 66 EKMKSLDVNQDSE--------LKFNEYWRLIGE 90
Score = 43.3 bits (102), Expect = 6e-06
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 155 TMMARKMKDTDSEEEIREAFRVF----DKDGNGF-ISAAELRHVM-TNLGEKLTDEE-VD 207
M A + T+ EE I F ++G +S E + ++ L L D +D
Sbjct: 8 LMAAEPL--TELEESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLD 65
Query: 208 EMIREADIDGDGQVNYE 224
E ++ D++ D ++ +
Sbjct: 66 EKMKSLDVNQDSELKFN 82
Score = 26.7 bits (59), Expect = 3.3
Identities = 7/73 (9%), Positives = 27/73 (36%), Gaps = 15/73 (20%)
Query: 7 SLLDGD-GTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNG 65
+ +G +++ E ++ +L ++ +V + + +L + +
Sbjct: 32 ARQEGRKDSLSVNEFKELV--------TQQLPHLLKDVGSLDEKMKSLDV------NQDS 77
Query: 66 TIDFPEFLTMMAR 78
+ F E+ ++
Sbjct: 78 ELKFNEYWRLIGE 90
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 48.7 bits (116), Expect = 9e-08
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 85 SEEEIREAFRVFDK--DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 142
+ EE + + F +GFI+ + R+ G L + ++ AD++ D
Sbjct: 28 TVEERAKHDQQFHSLKPISGFITGDQARNFFFQSG--LPQPVLAQIWALADMNND----- 80
Query: 143 EGNGTIDFPEFLTMM 157
G +D EF M
Sbjct: 81 ---GRMDQVEFSIAM 92
Score = 44.8 bits (106), Expect = 2e-06
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 166 SEEEIREAFRVFDK--DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 223
+ EE + + F +GFI+ + R+ G L + ++ AD++ DG+++
Sbjct: 28 TVEERAKHDQQFHSLKPISGFITGDQARNFFFQSG--LPQPVLAQIWALADMNNDGRMDQ 85
Query: 224 E 224
Sbjct: 86 V 86
Score = 31.0 bits (70), Expect = 0.13
Identities = 13/70 (18%), Positives = 19/70 (27%), Gaps = 18/70 (25%)
Query: 7 SLLDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGT 66
SL G IT + G + L + D + +G
Sbjct: 41 SLKPISGFITGDQARNFFFQSGLP--QPVLAQIWALADMN----------------NDGR 82
Query: 67 IDFPEFLTMM 76
+D EF M
Sbjct: 83 MDQVEFSIAM 92
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 47.6 bits (113), Expect = 1e-07
Identities = 16/97 (16%), Positives = 42/97 (43%), Gaps = 17/97 (17%)
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVF-DKDGNGF-ISAAELRHVMTN-----LGEKLTD 122
MA ++ + + + F + K+G+ F ++ +EL+ ++T LG++ +
Sbjct: 7 HHHHGSMACPLEK--ALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDE 64
Query: 123 EEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
+++ D + D + +DF E+ ++
Sbjct: 65 AAFQKLMSNLDSNRDNE--------VDFQEYCVFLSC 93
Score = 43.4 bits (102), Expect = 6e-06
Identities = 17/99 (17%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 151 PEFLTMMARKMKDTDSEEEIREAFRVF-DKDGNGF-ISAAELRHVMTN-----LGEKLTD 203
MA ++ + + + F + K+G+ F ++ +EL+ ++T LG++ +
Sbjct: 7 HHHHGSMACPLEK--ALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDE 64
Query: 204 EEVDEMIREADIDGDGQVNYE--VYTIYCVHIMGNTYLK 240
+++ D + D +V+++ + C+ +M N + +
Sbjct: 65 AAFQKLMSNLDSNRDNEVDFQEYCVFLSCIAMMCNEFFE 103
Score = 29.9 bits (67), Expect = 0.24
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 21/80 (26%)
Query: 4 EYGSLLDGDGTITTKELGTVMRS-----LGQNPTEAELQDMINEVDADENVESNLQYAEL 58
+Y + EL ++ LG+ EA Q +++ +D++
Sbjct: 30 KYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSN------------ 77
Query: 59 FVYHGNGTIDFPEFLTMMAR 78
+ +DF E+ ++
Sbjct: 78 ----RDNEVDFQEYCVFLSC 93
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 47.1 bits (112), Expect = 2e-07
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 85 SEEEIREAFRVFDK--DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 142
E+ + +FD NGF+S +++ V+ N L + + + +DID DG
Sbjct: 10 KPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSK--LPVDILGRVWELSDIDHDGM--- 64
Query: 143 EGNGTIDFPEFLTMM 157
+D EF M
Sbjct: 65 -----LDRDEFAVAM 74
Score = 45.9 bits (109), Expect = 6e-07
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 166 SEEEIREAFRVFDK--DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 223
E+ + +FD NGF+S +++ V+ N L + + + +DID DG ++
Sbjct: 10 KPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSK--LPVDILGRVWELSDIDHDGMLDR 67
Query: 224 EVYTIYCVHI 233
+ + + +
Sbjct: 68 DEFAVAMFLV 77
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 45.5 bits (108), Expect = 7e-07
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 83 TDSEEEIREAFRVFDK--DGNGFISAAELRHVMTN-----LGEKLTDEEVDEMIREADID 135
+ E + F K G+++ +LR +M L + VD+++++ D
Sbjct: 2 SQMEHAMETMMFTFHKFAGDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQC 61
Query: 136 GDGQVNYEGNGTIDFPEFLTMMAR 159
DG+V F F +++A
Sbjct: 62 RDGKV--------GFQSFFSLIAG 77
Score = 39.4 bits (92), Expect = 1e-04
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 164 TDSEEEIREAFRVFDK--DGNGFISAAELRHVMTN-----LGEKLTDEEVDEMIREADID 216
+ E + F K G+++ +LR +M L + VD+++++ D
Sbjct: 2 SQMEHAMETMMFTFHKFAGDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQC 61
Query: 217 GDGQVNYE 224
DG+V ++
Sbjct: 62 RDGKVGFQ 69
Score = 31.7 bits (72), Expect = 0.052
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 21/72 (29%)
Query: 12 DGTITTKELGTVMRS-----LGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGT 66
G +T ++L +M L + ++ ++D +G
Sbjct: 22 KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQC----------------RDGK 65
Query: 67 IDFPEFLTMMAR 78
+ F F +++A
Sbjct: 66 VGFQSFFSLIAG 77
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 45.2 bits (107), Expect = 1e-06
Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 18/87 (20%)
Query: 83 TDSEEEIREAFRVF----DKDGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMIREA 132
E+ + F + G+ + + AEL+ ++ + + + ++ +
Sbjct: 3 RPLEQAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVL 62
Query: 133 DIDGDGQVNYEGNGTIDFPEFLTMMAR 159
D + D +V DF E++ +A
Sbjct: 63 DTNKDCEV--------DFVEYVRSLAC 81
Score = 40.6 bits (95), Expect = 4e-05
Identities = 13/89 (14%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 164 TDSEEEIREAFRVF----DKDGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMIREA 213
E+ + F + G+ + + AEL+ ++ + + + ++ +
Sbjct: 3 RPLEQAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVL 62
Query: 214 DIDGDGQVNYE--VYTIYCVHIMGNTYLK 240
D + D +V++ V ++ C+ + + Y K
Sbjct: 63 DTNKDCEVDFVEYVRSLACLCLYCHEYFK 91
Score = 28.3 bits (63), Expect = 0.75
Identities = 10/78 (12%), Positives = 25/78 (32%), Gaps = 22/78 (28%)
Query: 7 SLLDGDG-TITTKELGTVMRS-----LGQNPTEAELQDMINEVDADENVESNLQYAELFV 60
+ GD + EL +++ E + ++ +D +
Sbjct: 20 AGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTN-------------- 65
Query: 61 YHGNGTIDFPEFLTMMAR 78
+ +DF E++ +A
Sbjct: 66 --KDCEVDFVEYVRSLAC 81
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 47.6 bits (112), Expect = 1e-06
Identities = 22/125 (17%), Positives = 43/125 (34%), Gaps = 14/125 (11%)
Query: 89 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTI 148
I R DK+ + ++ EL+ + L ++ D ++ RE D + E
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDE----- 67
Query: 149 DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL-GEKLTDEEVD 207
+ F M+ ++ EI AF +S L + + E+ +
Sbjct: 68 EIETFYKMLTQR-------AEIDRAFEEAAGSAE-TLSVERLVTFLQHQQREEEAGPALA 119
Query: 208 EMIRE 212
+ E
Sbjct: 120 LSLIE 124
Score = 41.4 bits (96), Expect = 2e-04
Identities = 12/65 (18%), Positives = 25/65 (38%)
Query: 170 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIY 229
I R DK+ + ++ EL+ + L ++ D ++ RE D + E +
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIETF 72
Query: 230 CVHIM 234
+
Sbjct: 73 YKMLT 77
Score = 36.4 bits (83), Expect = 0.007
Identities = 17/123 (13%), Positives = 35/123 (28%), Gaps = 22/123 (17%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+ D + KEL ++ L + + + E D + +++
Sbjct: 23 NKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQ----------------TDSLED 66
Query: 70 PEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNL-GEKLTDEEVDEM 128
E T + EI AF +S L + + E+ +
Sbjct: 67 EEIETFYKMLTQR----AEIDRAFEEAAGSAE-TLSVERLVTFLQHQQREEEAGPALALS 121
Query: 129 IRE 131
+ E
Sbjct: 122 LIE 124
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 43.6 bits (103), Expect = 3e-06
Identities = 16/85 (18%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 83 TDSEEEIREAFRVF----DKDGNGF-ISAAELRHVMTN---LGEKLTDEEVDEMIREADI 134
++ I +F ++G+ +S EL+ ++ +G KL D E+ ++ + D
Sbjct: 3 MPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDR 62
Query: 135 DGDGQVNYEGNGTIDFPEFLTMMAR 159
+ D + ++F E++T +
Sbjct: 63 NKDQE--------VNFQEYVTFLGA 79
Score = 39.0 bits (91), Expect = 1e-04
Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 164 TDSEEEIREAFRVF----DKDGNGF-ISAAELRHVMTN---LGEKLTDEEVDEMIREADI 215
++ I +F ++G+ +S EL+ ++ +G KL D E+ ++ + D
Sbjct: 3 MPLDQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDR 62
Query: 216 DGDGQVNYE--VYTIYCVHIMGNTYLK 240
+ D +VN++ V + + ++ N LK
Sbjct: 63 NKDQEVNFQEYVTFLGALALIYNEALK 89
Score = 26.7 bits (59), Expect = 2.5
Identities = 14/76 (18%), Positives = 34/76 (44%), Gaps = 20/76 (26%)
Query: 7 SLLDGD-GTITTKELGTVMRS---LGQNPTEAELQDMINEVDADENVESNLQYAELFVYH 62
S +GD T++ KEL +++ +G +AE+ ++ ++D +
Sbjct: 20 SGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRN---------------- 63
Query: 63 GNGTIDFPEFLTMMAR 78
+ ++F E++T +
Sbjct: 64 KDQEVNFQEYVTFLGA 79
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 43.7 bits (103), Expect = 3e-06
Identities = 15/87 (17%), Positives = 38/87 (43%), Gaps = 18/87 (20%)
Query: 83 TDSEEEIREAFRVF----DKDGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMIREA 132
+ E+ + F K+G+ F ++ +EL+ ++T LG++ + +++
Sbjct: 6 SPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNL 65
Query: 133 DIDGDGQVNYEGNGTIDFPEFLTMMAR 159
D + D + +DF E+ ++
Sbjct: 66 DSNRDNE--------VDFQEYCVFLSS 84
Score = 39.5 bits (92), Expect = 1e-04
Identities = 15/89 (16%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 164 TDSEEEIREAFRVF----DKDGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMIREA 213
+ E+ + F K+G+ F ++ +EL+ ++T LG++ + +++
Sbjct: 6 SPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNL 65
Query: 214 DIDGDGQVNYE--VYTIYCVHIMGNTYLK 240
D + D +V+++ + + +M N + +
Sbjct: 66 DSNRDNEVDFQEYCVFLSSIAMMSNEFFE 94
Score = 29.5 bits (66), Expect = 0.30
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 22/78 (28%)
Query: 7 SLLDGD-GTITTKELGTVMRS-----LGQNPTEAELQDMINEVDADENVESNLQYAELFV 60
S +GD + EL ++ LG+ EA Q +++ +D++
Sbjct: 23 SGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSN-------------- 68
Query: 61 YHGNGTIDFPEFLTMMAR 78
+ +DF E+ ++
Sbjct: 69 --RDNEVDFQEYCVFLSS 84
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 3e-06
Identities = 34/239 (14%), Positives = 68/239 (28%), Gaps = 59/239 (24%)
Query: 15 ITTKELGTVMRSL-GQNPTEAELQDMINEVDADENVESNLQYAELFV-YHGNGTIDFPE- 71
+TT+ V L T L + DE L + Y D P
Sbjct: 270 LTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVK-------SLLLKYLDCRPQDLPRE 321
Query: 72 -------FLTMMARKMKD------------TD-------------SEEEIREAFR---VF 96
L+++A ++D D E R+ F VF
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 97 DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPE-FLT 155
+ I L + ++ + V+++ + + ++ + TI P +L
Sbjct: 382 PPSAH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK-----ESTISIPSIYLE 434
Query: 156 MMARKMKDTDSEEEIREAFRVFDK-DGNGFISAAE----LRHVMTNLGEKLTDEEVDEM 209
+ + + I + + + D + I H+ +L E +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Score = 39.1 bits (90), Expect = 0.001
Identities = 31/169 (18%), Positives = 62/169 (36%), Gaps = 41/169 (24%)
Query: 82 DTDSEE---EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDG 138
D ++ E + ++ VF+ F+ + + V L+ EE+D +I D
Sbjct: 8 DFETGEHQYQYKDILSVFEDA---FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV--- 61
Query: 139 QVNYEGNGTIDFPEFLTMMARKMKDT--DSEEEIREAF--RVFDKDGNGFISAAELRHVM 194
+GT ++ T +EE+ + F V + +S +
Sbjct: 62 ------SGT-----------LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 195 TNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIMGNTYLKIRK 243
++ ++ E+ D + D Q V+ Y V + YLK+R+
Sbjct: 105 PSMMTRMYIEQRDRLYN------DNQ----VFAKYNVSRL-QPYLKLRQ 142
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 42.9 bits (101), Expect = 6e-06
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 19/88 (21%)
Query: 83 TDSEEEIREAFRVFDK------DGNGFISAAELRHVMTN-----LGEKLTDEEVDEMIRE 131
T+ E+ + F K IS + R ++ L + + D++I+
Sbjct: 4 TELEKAVIVLVENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQN 63
Query: 132 ADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
D + DG+ I F E+ T++
Sbjct: 64 LDANHDGR--------ISFDEYWTLIGG 83
Score = 37.1 bits (86), Expect = 7e-04
Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 11/72 (15%)
Query: 164 TDSEEEIREAFRVFDK------DGNGFISAAELRHVMTN-----LGEKLTDEEVDEMIRE 212
T+ E+ + F K IS + R ++ L + + D++I+
Sbjct: 4 TELEKAVIVLVENFYKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQN 63
Query: 213 ADIDGDGQVNYE 224
D + DG+++++
Sbjct: 64 LDANHDGRISFD 75
Score = 28.2 bits (63), Expect = 0.89
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 21/74 (28%)
Query: 10 DGDGTITTKELGTVMRS-----LGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGN 64
I+ +++ L +I +DA+ +
Sbjct: 26 LVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDAN----------------HD 69
Query: 65 GTIDFPEFLTMMAR 78
G I F E+ T++
Sbjct: 70 GRISFDEYWTLIGG 83
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 42.5 bits (100), Expect = 6e-06
Identities = 15/87 (17%), Positives = 37/87 (42%), Gaps = 18/87 (20%)
Query: 83 TDSEEEIREAFRVF----DKDGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMIREA 132
E+ + F K+G+ F ++ +EL+ ++T LG++ + +++
Sbjct: 3 CPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNL 62
Query: 133 DIDGDGQVNYEGNGTIDFPEFLTMMAR 159
D + D + +DF E+ ++
Sbjct: 63 DSNRDNE--------VDFQEYCVFLSC 81
Score = 38.3 bits (89), Expect = 3e-04
Identities = 16/89 (17%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 164 TDSEEEIREAFRVF----DKDGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMIREA 213
E+ + F K+G+ F ++ +EL+ ++T LG++ + +++
Sbjct: 3 CPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNL 62
Query: 214 DIDGDGQVNYE--VYTIYCVHIMGNTYLK 240
D + D +V+++ + C+ +M N + +
Sbjct: 63 DSNRDNEVDFQEYCVFLSCIAMMCNEFFE 91
Score = 30.2 bits (68), Expect = 0.18
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 22/78 (28%)
Query: 7 SLLDGD-GTITTKELGTVMRS-----LGQNPTEAELQDMINEVDADENVESNLQYAELFV 60
S +GD + EL ++ LG+ EA Q +++ +D++
Sbjct: 20 SGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSN-------------- 65
Query: 61 YHGNGTIDFPEFLTMMAR 78
+ +DF E+ ++
Sbjct: 66 --RDNEVDFQEYCVFLSC 81
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 42.5 bits (100), Expect = 8e-06
Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 18/90 (20%)
Query: 80 MKDTDSEEEIREAFRVF----DKDGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMI 129
M + E+ + F ++G+ F +S E++ ++ +GEK+ +E + +++
Sbjct: 1 MMSSSLEQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLM 60
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMAR 159
D + D Q +DF E+ +A
Sbjct: 61 GSLDENSDQQ--------VDFQEYAVFLAL 82
Score = 38.3 bits (89), Expect = 2e-04
Identities = 17/92 (18%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 161 MKDTDSEEEIREAFRVF----DKDGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMI 210
M + E+ + F ++G+ F +S E++ ++ +GEK+ +E + +++
Sbjct: 1 MMSSSLEQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLM 60
Query: 211 READIDGDGQVNYE--VYTIYCVHIMGNTYLK 240
D + D QV+++ + + +M N + +
Sbjct: 61 GSLDENSDQQVDFQEYAVFLALITVMSNDFFQ 92
Score = 27.1 bits (60), Expect = 1.9
Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 7 SLLDGD-GTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNG 65
S +GD ++ E+ ++ EL + E +E ++ + + + +
Sbjct: 21 SSQEGDKFKLSKGEMKELL--------HKELPSFVGEKVDEEGLKKLMGSLDE---NSDQ 69
Query: 66 TIDFPEFLTMMAR 78
+DF E+ +A
Sbjct: 70 QVDFQEYAVFLAL 82
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 41.3 bits (97), Expect = 2e-05
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 15/85 (17%)
Query: 82 DTDSEEEIREAFRVFDK----DGNGF-ISAAELRHVM-TNLGEKLTDEE-VDEMIREADI 134
+T E+ + F K +G+ +S EL+ ++ L E +D++++ D
Sbjct: 2 ETPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDK 61
Query: 135 DGDGQVNYEGNGTIDFPEFLTMMAR 159
+ D + IDF E+ +
Sbjct: 62 NSDQE--------IDFKEYSVFLTM 78
Score = 36.3 bits (84), Expect = 0.001
Identities = 14/71 (19%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 163 DTDSEEEIREAFRVFDK----DGNGF-ISAAELRHVM-TNLGEKLTDEE-VDEMIREADI 215
+T E+ + F K +G+ +S EL+ ++ L E +D++++ D
Sbjct: 2 ETPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDK 61
Query: 216 DGDGQVNYEVY 226
+ D +++++ Y
Sbjct: 62 NSDQEIDFKEY 72
Score = 27.8 bits (62), Expect = 1.2
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 19/75 (25%)
Query: 7 SLLDGD-GTITTKELGTVM-RSLGQNPT-EAELQDMINEVDADENVESNLQYAELFVYHG 63
S +G T++ KEL ++ + L E+ + D++ +D +
Sbjct: 20 SGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKN----------------S 63
Query: 64 NGTIDFPEFLTMMAR 78
+ IDF E+ +
Sbjct: 64 DQEIDFKEYSVFLTM 78
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 2e-05
Identities = 41/277 (14%), Positives = 79/277 (28%), Gaps = 101/277 (36%)
Query: 1 MIEEYG-SLLD----GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQY 55
+ YG S+LD +T G + + +N MI E D +++ +
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN-----YSAMIFETIVDGKLKTEKIF 1707
Query: 56 AEL------FVYHG-NGTIDFPEF-----LTM-MARKMKDTDSEEEIREAFRVFDKDGNG 102
E+ + + G + +F M A AF G
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA--------------AFEDLKSKGLI 1753
Query: 103 FISAAELRHVMTNLGE---------KLTDEEVDEMIR--------EADIDGDGQVNYEGN 145
A H +LGE ++ E + E++ D G+ NY
Sbjct: 1754 PADATFAGH---SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNY--- 1807
Query: 146 GTIDFPEFLTMMA---RKMKDTDSEEEIREAFRVFDKDGNGFISAA-------------- 188
M+A ++ + S+E ++ K +
Sbjct: 1808 ---------GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD 1858
Query: 189 -----ELRHVMTNLGEK----------LTDEEVDEMI 210
+ +V+ + + L+ EEV+ +
Sbjct: 1859 LRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 40.8 bits (95), Expect = 3e-04
Identities = 48/249 (19%), Positives = 93/249 (37%), Gaps = 86/249 (34%)
Query: 1 MIEEYGSLLDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFV 60
++E+ SL + +G + M S+ N T+ ++QD +N+ ++ ++ + L
Sbjct: 323 ILED--SLENNEGVPSP------MLSI-SNLTQEQVQDYVNKTNSHLPAGKQVEIS-LV- 371
Query: 61 YHGNGTIDF-----PEFLTMMA---RKMKDTDSEEEIREAFR----VFDKDGNGF--ISA 106
NG + P+ L + RK K ++ R F F N F +++
Sbjct: 372 ---NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF---SNRFLPVAS 425
Query: 107 AELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDS 166
H ++L L ++I + D+ + V++ I P
Sbjct: 426 PF--H--SHL---LVP--ASDLINK-DLVKNN-VSFNAK-DIQIP--------------- 458
Query: 167 EEEIREAFRVFD-KDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEV 225
V+D DG ++LR + ++ E++ VD +IR V +E
Sbjct: 459 ---------VYDTFDG------SDLRVLSGSISERI----VDCIIRL-------PVKWET 492
Query: 226 YTIYCV-HI 233
T + HI
Sbjct: 493 TTQFKATHI 501
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 40.5 bits (95), Expect = 3e-05
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 18/87 (20%)
Query: 83 TDSEEEIREAFRVF----DKDGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMIREA 132
++ E + VF K+G+ + +S EL+ ++ L + + VD++++E
Sbjct: 2 SELETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKEL 61
Query: 133 DIDGDGQVNYEGNGTIDFPEFLTMMAR 159
D +GDG+V DF EF+ ++A
Sbjct: 62 DENGDGEV--------DFQEFVVLVAA 80
Score = 35.5 bits (82), Expect = 0.002
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 164 TDSEEEIREAFRVF----DKDGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMIREA 213
++ E + VF K+G+ + +S EL+ ++ L + + VD++++E
Sbjct: 2 SELETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKEL 61
Query: 214 DIDGDGQVNYE 224
D +GDG+V+++
Sbjct: 62 DENGDGEVDFQ 72
Score = 27.8 bits (62), Expect = 1.1
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 22/78 (28%)
Query: 7 SLLDGD-GTITTKELGTVMRS-----LGQNPTEAELQDMINEVDADENVESNLQYAELFV 60
S +GD ++ KEL ++++ L + ++ E+D +
Sbjct: 19 SGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDEN-------------- 64
Query: 61 YHGNGTIDFPEFLTMMAR 78
G+G +DF EF+ ++A
Sbjct: 65 --GDGEVDFQEFVVLVAA 80
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 40.5 bits (95), Expect = 4e-05
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 81 KDTDSEEEIREAFRVFDK----DGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMIR 130
T EE + +F + G+ +S EL+ ++T + +DE+ +
Sbjct: 3 GSTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQ 62
Query: 131 EADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
D + D Q +DF EF++++A
Sbjct: 63 GLDANQDEQ--------VDFQEFISLVAI 83
Score = 34.8 bits (80), Expect = 0.004
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 162 KDTDSEEEIREAFRVFDK----DGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMIR 211
T EE + +F + G+ +S EL+ ++T + +DE+ +
Sbjct: 3 GSTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQ 62
Query: 212 EADIDGDGQVNYE 224
D + D QV+++
Sbjct: 63 GLDANQDEQVDFQ 75
Score = 27.4 bits (61), Expect = 1.5
Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 22/78 (28%)
Query: 7 SLLDGD-GTITTKELGTVMRS-----LGQNPTEAELQDMINEVDADENVESNLQYAELFV 60
S+ G T++ EL ++ + +A + ++ +DA+
Sbjct: 22 SVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDAN-------------- 67
Query: 61 YHGNGTIDFPEFLTMMAR 78
+ +DF EF++++A
Sbjct: 68 --QDEQVDFQEFISLVAI 83
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 40.6 bits (95), Expect = 4e-05
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 20/94 (21%)
Query: 76 MARKMKDTDSEEEIREAFRVFDK----DGNGF-ISAAELRHVMTN-----LGEKLTDEEV 125
MA++ T++E I +F K DGN IS E M + +
Sbjct: 1 MAKRP--TETERCIESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVL 58
Query: 126 DEMIREADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
D M+++ D+D DGQ +DF EFL ++
Sbjct: 59 DRMMKKLDLDSDGQ--------LDFQEFLNLIGG 84
Score = 35.2 bits (81), Expect = 0.003
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 157 MARKMKDTDSEEEIREAFRVFDK----DGNGF-ISAAELRHVMTN-----LGEKLTDEEV 206
MA++ T++E I +F K DGN IS E M + +
Sbjct: 1 MAKRP--TETERCIESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVL 58
Query: 207 DEMIREADIDGDGQVNYE 224
D M+++ D+D DGQ++++
Sbjct: 59 DRMMKKLDLDSDGQLDFQ 76
Score = 26.3 bits (58), Expect = 4.5
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 12/73 (16%)
Query: 7 SLLDGD-GTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNG 65
+ DG+ I+ E M EL ++ ++ +L +G
Sbjct: 23 AGRDGNNTKISKTEFLIFM--------NTELAAFTQNQKDPGVLDRMMKKLDL---DSDG 71
Query: 66 TIDFPEFLTMMAR 78
+DF EFL ++
Sbjct: 72 QLDFQEFLNLIGG 84
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 40.3 bits (94), Expect = 7e-05
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 19/88 (21%)
Query: 83 TDSEEEIREAFRVF----DKDGNGF-ISAAELRHVMTN------LGEKLTDEEVDEMIRE 131
+ E I F K G+ ++ E + ++ E ++ ++ ++ +
Sbjct: 5 SQLERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMED 64
Query: 132 ADIDGDGQVNYEGNGTIDFPEFLTMMAR 159
D + D Q + F EF+ +MAR
Sbjct: 65 LDTNADKQ--------LSFEEFIMLMAR 84
Score = 34.5 bits (79), Expect = 0.008
Identities = 11/72 (15%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 164 TDSEEEIREAFRVF----DKDGNGF-ISAAELRHVMTN------LGEKLTDEEVDEMIRE 212
+ E I F K G+ ++ E + ++ E ++ ++ ++ +
Sbjct: 5 SQLERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMED 64
Query: 213 ADIDGDGQVNYE 224
D + D Q+++E
Sbjct: 65 LDTNADKQLSFE 76
Score = 28.3 bits (63), Expect = 0.90
Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 18/62 (29%)
Query: 17 TKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMM 76
K+L ++ +N ++ ++ ++D + + + F EF+ +M
Sbjct: 41 RKDLQNFLKKENKNE--KVIEHIMEDLDTN----------------ADKQLSFEEFIMLM 82
Query: 77 AR 78
AR
Sbjct: 83 AR 84
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 39.0 bits (91), Expect = 1e-04
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 18/87 (20%)
Query: 83 TDSEEEIREAFRVFDK----DGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMIREA 132
T+ E + VF + +G+ ++ EL+ +M L + VD+++++
Sbjct: 2 TELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDL 61
Query: 133 DIDGDGQVNYEGNGTIDFPEFLTMMAR 159
D +GD Q +DF EF+ +A
Sbjct: 62 DANGDAQ--------VDFSEFIVFVAA 80
Score = 33.6 bits (77), Expect = 0.010
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 164 TDSEEEIREAFRVFDK----DGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMIREA 213
T+ E + VF + +G+ ++ EL+ +M L + VD+++++
Sbjct: 2 TELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDL 61
Query: 214 DIDGDGQVNYEVY 226
D +GD QV++ +
Sbjct: 62 DANGDAQVDFSEF 74
Score = 27.5 bits (61), Expect = 1.7
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 22/78 (28%)
Query: 7 SLLDGD-GTITTKELGTVMRS-----LGQNPTEAELQDMINEVDADENVESNLQYAELFV 60
S +G T+T EL +M L + + ++ ++DA+
Sbjct: 19 SGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDAN-------------- 64
Query: 61 YHGNGTIDFPEFLTMMAR 78
G+ +DF EF+ +A
Sbjct: 65 --GDAQVDFSEFIVFVAA 80
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 39.0 bits (91), Expect = 1e-04
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 82 DTDSEEEIREAFRVFDK--DGNGFISAAELRHVMT-------NLGEKLTDEEVDEMIREA 132
+T +E I +F K + I L +M + +K + ++ +
Sbjct: 2 NTQAERSIIGMIDMFHKYTRRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKK 61
Query: 133 DIDGDGQVNYEGNGTIDFPEFLTMMAR 159
D + D ++ DF EFL+++
Sbjct: 62 DKNEDKKI--------DFSEFLSLLGD 80
Score = 33.2 bits (76), Expect = 0.013
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 163 DTDSEEEIREAFRVFDK--DGNGFISAAELRHVMT-------NLGEKLTDEEVDEMIREA 213
+T +E I +F K + I L +M + +K + ++ +
Sbjct: 2 NTQAERSIIGMIDMFHKYTRRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKK 61
Query: 214 DIDGDGQVNYE 224
D + D ++++
Sbjct: 62 DKNEDKKIDFS 72
Score = 26.7 bits (59), Expect = 3.3
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 19/72 (26%)
Query: 12 DGTITTKELGTVMRSLGQNPTEAELQDMINEVD-----ADENVESNLQYAELFVYHGNGT 66
D I L T+M+ N A + N + D+N +
Sbjct: 23 DDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKN--------------EDKK 68
Query: 67 IDFPEFLTMMAR 78
IDF EFL+++
Sbjct: 69 IDFSEFLSLLGD 80
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 40.4 bits (94), Expect = 2e-04
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 65 GTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGE----KL 120
+ E ++ D + +R F + DK+ +G ++A E++ ++
Sbjct: 77 QVLTKDELKDFY-EQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSK 135
Query: 121 TDEEVDE----MIREADIDGDGQVNYE 143
E DE ++ E D G + E
Sbjct: 136 IKERADEYTALIMEELDPTNLGYIEME 162
Score = 40.4 bits (94), Expect = 2e-04
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 146 GTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGE----KL 201
+ E ++ D + +R F + DK+ +G ++A E++ ++
Sbjct: 77 QVLTKDELKDFY-EQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSK 135
Query: 202 TDEEVDE----MIREADIDGDGQVNYE 224
E DE ++ E D G + E
Sbjct: 136 IKERADEYTALIMEELDPTNLGYIEME 162
Score = 38.1 bits (88), Expect = 8e-04
Identities = 19/121 (15%), Positives = 42/121 (34%), Gaps = 10/121 (8%)
Query: 80 MKDTDS-EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDG 138
M +D ++ ++ ++ EL+ L ++ D + D + DG
Sbjct: 54 MDGSDEFAVQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADG 113
Query: 139 QVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIRE----AFRVFDKDGNGFISAAELRHVM 194
++ E + E + + A K + +E E D G+I +L ++
Sbjct: 114 RLTAE-----EVKEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALL 168
Query: 195 T 195
Sbjct: 169 L 169
Score = 28.1 bits (62), Expect = 2.1
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 161 MKDTDS-EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDG 219
M +D ++ ++ ++ EL+ L ++ D + D + DG
Sbjct: 54 MDGSDEFAVQMFDSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADG 113
Query: 220 QVNYE 224
++ E
Sbjct: 114 RLTAE 118
Score = 27.3 bits (60), Expect = 3.1
Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 23/112 (20%)
Query: 10 DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDF 69
+T EL L + L+ + VD + +G +
Sbjct: 74 IVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKN----------------ADGRLTA 117
Query: 70 PEF-----LTMMARKMKDTD--SEEEIREAFRVFDKDGNGFISAAELRHVMT 114
E L+ A K+ ++E D G+I +L ++
Sbjct: 118 EEVKEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALLL 169
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 38.2 bits (89), Expect = 2e-04
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 18/87 (20%)
Query: 83 TDSEEEIREAFRVF----DKDGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMIREA 132
++ E+ + VF ++G+ + +EL+ ++ N L E E VD+++
Sbjct: 2 SELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETL 61
Query: 133 DIDGDGQVNYEGNGTIDFPEFLTMMAR 159
D +GDG+ DF EF+ +A
Sbjct: 62 DSNGDGEC--------DFQEFMAFVAM 80
Score = 33.6 bits (77), Expect = 0.009
Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 164 TDSEEEIREAFRVF----DKDGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMIREA 213
++ E+ + VF ++G+ + +EL+ ++ N L E E VD+++
Sbjct: 2 SELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETL 61
Query: 214 DIDGDGQVNYEVY 226
D +GDG+ +++ +
Sbjct: 62 DSNGDGECDFQEF 74
Score = 25.9 bits (57), Expect = 5.2
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 12/73 (16%)
Query: 7 SLLDGD-GTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNG 65
S +GD + EL ++ EL + E+ E V+ ++ + +G+G
Sbjct: 19 SGREGDKHKLKKSELKELI--------NNELSHFLEEIKEQEVVDKVMETLDS---NGDG 67
Query: 66 TIDFPEFLTMMAR 78
DF EF+ +A
Sbjct: 68 ECDFQEFMAFVAM 80
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 39.2 bits (91), Expect = 2e-04
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 12/76 (15%)
Query: 85 SEEEIREAFRVFDK--DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 142
++ +F NG I+ A + M L + + ++ + AD+D DG
Sbjct: 46 VGKDKPTYDEIFYTLSPVNGKITGANAKKEMVKSK--LPNTVLGKIWKLADVDKDGL--- 100
Query: 143 EGNGTIDFPEFLTMMA 158
+D EF
Sbjct: 101 -----LDDEEFALANH 111
Score = 36.8 bits (85), Expect = 0.001
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 166 SEEEIREAFRVFDK--DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 223
++ +F NG I+ A + M L + + ++ + AD+D DG ++
Sbjct: 46 VGKDKPTYDEIFYTLSPVNGKITGANAKKEMVKSK--LPNTVLGKIWKLADVDKDGLLDD 103
Query: 224 E 224
E
Sbjct: 104 E 104
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 38.3 bits (89), Expect = 3e-04
Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 18/87 (20%)
Query: 83 TDSEEEIREAFRVFDK----DGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMIREA 132
+ E + VF +G+ + +S EL+ ++ L + V++++ +
Sbjct: 3 SKLEGAMDALITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDL 62
Query: 133 DIDGDGQVNYEGNGTIDFPEFLTMMAR 159
D + D +V DF EF+ ++A
Sbjct: 63 DSNKDNEV--------DFNEFVVLVAA 81
Score = 33.3 bits (76), Expect = 0.014
Identities = 12/73 (16%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 164 TDSEEEIREAFRVFDK----DGNGF-ISAAELRHVMTN-----LGEKLTDEEVDEMIREA 213
+ E + VF +G+ + +S EL+ ++ L + V++++ +
Sbjct: 3 SKLEGAMDALITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDL 62
Query: 214 DIDGDGQVNYEVY 226
D + D +V++ +
Sbjct: 63 DSNKDNEVDFNEF 75
Score = 25.6 bits (56), Expect = 6.4
Identities = 13/78 (16%), Positives = 32/78 (41%), Gaps = 22/78 (28%)
Query: 7 SLLDGD-GTITTKELGTVMRS-----LGQNPTEAELQDMINEVDADENVESNLQYAELFV 60
S +GD ++ EL ++ + L ++ ++N++D++
Sbjct: 20 SGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSN-------------- 65
Query: 61 YHGNGTIDFPEFLTMMAR 78
+ +DF EF+ ++A
Sbjct: 66 --KDNEVDFNEFVVLVAA 81
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 35.3 bits (81), Expect = 0.003
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 24/94 (25%)
Query: 83 TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL------------TDEEVDEMI- 129
+ + F + D + +G + EL + T EK+ +EE M
Sbjct: 16 DPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMRE 75
Query: 130 ---READIDGDGQVNYEGNGTIDFPEFLTMMARK 160
+ D + D V E EFL RK
Sbjct: 76 HVMKNVDTNQDRLVTLE--------EFLASTQRK 101
Score = 33.8 bits (77), Expect = 0.009
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 16/77 (20%)
Query: 164 TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL------------TDEEVDEMI- 210
+ + F + D + +G + EL + T EK+ +EE M
Sbjct: 16 DPNRFNPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMRE 75
Query: 211 ---READIDGDGQVNYE 224
+ D + D V E
Sbjct: 76 HVMKNVDTNQDRLVTLE 92
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural
protein, Z-DISK structural complex; NMR {Homo sapiens}
SCOP: a.39.1.7
Length = 75
Score = 30.2 bits (68), Expect = 0.11
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 80 MKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 130
M DTD+ E++ +FR+ +I A ELR +L ++ I+
Sbjct: 3 MADTDTAEQVIASFRIL-ASDKPYILAEELRR-------ELPPDQAQYCIK 45
Score = 30.2 bits (68), Expect = 0.11
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 161 MKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 211
M DTD+ E++ +FR+ +I A ELR +L ++ I+
Sbjct: 3 MADTDTAEQVIASFRIL-ASDKPYILAEELRR-------ELPPDQAQYCIK 45
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+
and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia
coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A
Length = 883
Score = 32.4 bits (74), Expect = 0.13
Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 15/134 (11%)
Query: 97 DKDGNGFISAAELRHVMTNLGE---KLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPE- 152
D+DGN ++A RHV+ L +++ ++ E + G E
Sbjct: 252 DRDGNPNVTADITRHVLLLSRWKATDLFLKDIQVLVSELSMVEATPELLALVGEEGAAEP 311
Query: 153 ---FLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRH--------VMTNLGEKL 201
+ + ++ T + E R K EL + +
Sbjct: 312 YRYLMKNLRSRLMATQAWLEARLKGEELPKPEGLLTQNEELWEPLYACYQSLQACGMGII 371
Query: 202 TDEEVDEMIREADI 215
+ ++ + +R
Sbjct: 372 ANGDLLDTLRRVKC 385
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum}
Length = 611
Score = 32.3 bits (73), Expect = 0.14
Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 9/110 (8%)
Query: 41 NEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDG 100
NEV D N + A +Y G +M + + + D +G
Sbjct: 495 NEVAIDYN--AAFVGACAGLYRFFGDSSMQIDPSMPSHNVPVPPTPTPPDTQIVYGDLNG 552
Query: 101 NGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDF 150
+ +++ + + L + + E AD++ DG++N + D
Sbjct: 553 DQKVTSTDYTMLKRYLMKSIDRFNTSEQA--ADLNRDGKIN-----STDL 595
>2y3n_B Cellulosomal family-48 processive glycoside hydro; structrual
protein-hydrolase complex, cellulosome; 1.90A
{Bacteroides cellulosolvens}
Length = 71
Score = 29.2 bits (66), Expect = 0.20
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 12/74 (16%)
Query: 97 DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTM 156
D +G+G I+ A++ + + G+ + + V+E +AD++ DG +N + D +
Sbjct: 8 DLNGDGVINMADVMILAQSFGKAIGNPGVNE---KADLNNDGVIN-----SDDA----II 55
Query: 157 MARKMKDTDSEEEI 170
+A+ T S E +
Sbjct: 56 LAQYFGKTKSAEVV 69
Score = 28.8 bits (65), Expect = 0.29
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 178 DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 222
D +G+G I+ A++ + + G+ + + V+E +AD++ DG +N
Sbjct: 8 DLNGDGVINMADVMILAQSFGKAIGNPGVNE---KADLNNDGVIN 49
>4fl4_A Glycoside hydrolase family 9; structural genomics,
montreal-kingston bacterial structural initiative, BSGI,
dockerin; 2.80A {Clostridium thermocellum} PDB: 3p0d_A
Length = 88
Score = 29.6 bits (67), Expect = 0.23
Identities = 9/45 (20%), Positives = 25/45 (55%)
Query: 97 DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 141
D + +G +++ +L + + + ++ + + AD++ DG+VN
Sbjct: 24 DVNDDGKVNSTDLTLLKRYVLKAVSTLPSSKAEKNADVNRDGRVN 68
Score = 29.6 bits (67), Expect = 0.23
Identities = 9/45 (20%), Positives = 25/45 (55%)
Query: 178 DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 222
D + +G +++ +L + + + ++ + + AD++ DG+VN
Sbjct: 24 DVNDDGKVNSTDLTLLKRYVLKAVSTLPSSKAEKNADVNRDGRVN 68
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural
genomics; HET: ATP; 2.00A {Methanocaldococcus
jannaschii} SCOP: c.26.1.3
Length = 168
Score = 29.7 bits (67), Expect = 0.54
Identities = 24/142 (16%), Positives = 37/142 (26%), Gaps = 18/142 (12%)
Query: 89 IREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTI 148
I++ D+ I L T E MI ++ D D I
Sbjct: 20 IKKIAEEVDE----IIIGIGSAQKSHTLENPFTAGERILMITQSLKDYDLTYYPIPIKDI 75
Query: 149 DFPEFLTMMARKM-----KDTDSEEEIREAFRVFD-------KDGNGFISAAELRHVMTN 196
+F + +R F S E+R M N
Sbjct: 76 EFNSIWVSYVESLTPPFDIVYSGNPLVRVLFEERGYEVKRPEMFNRKEYSGTEIRRRMLN 135
Query: 197 LG--EKLTDEEVDEMIREADID 216
E L + V ++I+E
Sbjct: 136 GEKWEHLVPKAVVDVIKEIKGV 157
>2kld_A Polycystin-2; PC2, PKD2, calcium binding domain, EF hand,
cytosolic, calcium, coiled coil, disease mutation,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kle_A 2kq6_A 2y4q_A
Length = 123
Score = 29.3 bits (65), Expect = 0.59
Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 130 READIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAE 189
++ +D + +G G ++F E + K ++ EI F +D+DG+ ++ E
Sbjct: 45 KKNTVDDISESLRQGGGKLNFDELRQDLKGKGH---TDAEIEAIFTKYDQDGDQELTEHE 101
Query: 190 LRHVMTNLGEKL 201
+ + +L ++
Sbjct: 102 HQQMRDDLEKER 113
Score = 28.9 bits (64), Expect = 0.83
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 63 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL 120
G G ++F E + K ++ EI F +D+DG+ ++ E + + +L ++
Sbjct: 59 GGGKLNFDELRQDLKGKGH---TDAEIEAIFTKYDQDGDQELTEHEHQQMRDDLEKER 113
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex,
structural protein; 2.22A {Homo sapiens} PDB: 3unp_A
4dxr_A* 4dxs_A*
Length = 198
Score = 29.6 bits (66), Expect = 0.61
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 117 GEKLTDEEVDEMIREA----DIDGDGQVNY 142
G +T+E+V ++++A D G +Y
Sbjct: 1 GPGVTEEQVHHIVKQALQRYSEDRIGLADY 30
Score = 29.6 bits (66), Expect = 0.61
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 198 GEKLTDEEVDEMIREA----DIDGDGQVNY 223
G +T+E+V ++++A D G +Y
Sbjct: 1 GPGVTEEQVHHIVKQALQRYSEDRIGLADY 30
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 30.2 bits (69), Expect = 0.66
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 96 FDKDGNGF--ISAAEL------RHVMTNLGEKLTDEEVDEMIREAD 133
FD D NG +SA + + +TN +L+ E+++ M++EA+
Sbjct: 478 FDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAE 523
Score = 30.2 bits (69), Expect = 0.66
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 177 FDKDGNGF--ISAAEL------RHVMTNLGEKLTDEEVDEMIREAD 214
FD D NG +SA + + +TN +L+ E+++ M++EA+
Sbjct: 478 FDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAE 523
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Length = 86
Score = 28.2 bits (62), Expect = 0.67
Identities = 11/49 (22%), Positives = 27/49 (55%)
Query: 84 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 132
+ ++E + F +FD++ ++ ++T LG+ T E + +++EA
Sbjct: 11 EEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEA 59
Score = 28.2 bits (62), Expect = 0.67
Identities = 11/49 (22%), Positives = 27/49 (55%)
Query: 165 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 213
+ ++E + F +FD++ ++ ++T LG+ T E + +++EA
Sbjct: 11 EEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEA 59
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural
genomics, protein structure initiative, NYSGXRC, PSI;
2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2
d.41.2.2
Length = 449
Score = 29.9 bits (67), Expect = 0.72
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 6/70 (8%)
Query: 73 LTMMA---RKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGE-KLTDEEVDEM 128
L M+ + + D+ + R I ELR + + +L+ +E +
Sbjct: 39 LLMLQMIWKLYPEVDATFSLI--NRTKTVRLAEEIDEMELREQLDHARTLRLSKKENIWL 96
Query: 129 IREADIDGDG 138
Sbjct: 97 AGNTFYGRSQ 106
Score = 29.9 bits (67), Expect = 0.72
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 6/70 (8%)
Query: 154 LTMMA---RKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGE-KLTDEEVDEM 209
L M+ + + D+ + R I ELR + + +L+ +E +
Sbjct: 39 LLMLQMIWKLYPEVDATFSLI--NRTKTVRLAEEIDEMELREQLDHARTLRLSKKENIWL 96
Query: 210 IREADIDGDG 219
Sbjct: 97 AGNTFYGRSQ 106
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 0.97
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 127 EMIR--EADIDGDGQVNYEGNGTIDFPEFLTM--MARKMKDTDSEEEIREAFRVFDKDGN 182
E I +A I G Y+ EF M + +++ + E R N
Sbjct: 1118 ETILSGKARICIVG--GYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPATTTRN 1175
Query: 183 GFI 185
GF+
Sbjct: 1176 GFM 1178
Score = 27.9 bits (62), Expect = 4.2
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 71 EFLTM--MARKMKDTDSEEEIREAFRVFDKDGNGFI 104
EF M + +++ + E R NGF+
Sbjct: 1143 EFGNMKATSNTLEEFEHGRTPAEMSRPATTTRNGFM 1178
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 28.3 bits (64), Expect = 1.4
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 96 FDKDGNGF--ISAAEL------RHVMTNLGEKLTDEEVDEMIREAD 133
F+ D NG +SA + + +TN +L+ E+++ MI +AD
Sbjct: 87 FEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDAD 132
Score = 28.3 bits (64), Expect = 1.4
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 177 FDKDGNGF--ISAAEL------RHVMTNLGEKLTDEEVDEMIREAD 214
F+ D NG +SA + + +TN +L+ E+++ MI +AD
Sbjct: 87 FEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDAD 132
>3be7_A Zn-dependent arginine carboxypeptidase; unknown source,
amidohydrolase, sargasso SEA, structural GEN protein
structure initiative, PSI; HET: ARG; 2.30A
{Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A*
Length = 408
Score = 28.8 bits (65), Expect = 1.6
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 62 HGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGE--- 118
H + + PEF DS E R+ R K G I VM+ +
Sbjct: 144 HCDHNLLPPEFNYSSEGV---VDSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNA 200
Query: 119 -KLTDEEVDEMIREA 132
+ T EE+ ++ EA
Sbjct: 201 KQFTLEEMKAIVDEA 215
Score = 27.7 bits (62), Expect = 3.8
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 165 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGE----KLTDEEVDEMIREA 213
DS E R+ R K G I VM+ + + T EE+ ++ EA
Sbjct: 163 DSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEA 215
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 28.8 bits (63), Expect = 1.7
Identities = 35/217 (16%), Positives = 63/217 (29%), Gaps = 11/217 (5%)
Query: 13 GTITTKELGTVMRSLGQNPTEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEF 72
G + T G + LG + + V N+E + +Y NG E
Sbjct: 315 GRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEK 374
Query: 73 LTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 132
M+ ++ F+ N +S + V+ L EK +E E ++
Sbjct: 375 DEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKI 434
Query: 133 DIDGDGQVN--------YEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGF 184
+ E + + +D +E ++ R +
Sbjct: 435 VKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEY 494
Query: 185 ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQV 221
EL L EKL + E + D Q+
Sbjct: 495 ---DELAETQGKLEEKLQELEANPPSDVYLSSRDRQI 528
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 27.9 bits (63), Expect = 1.7
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 96 FDKDGNGF--ISAAEL------RHVMTNLGEKLTDEEVDEMIREAD 133
F D NG +SA + +TN +LT EE+D M+ EA+
Sbjct: 87 FALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAE 132
Score = 27.9 bits (63), Expect = 1.7
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 177 FDKDGNGF--ISAAEL------RHVMTNLGEKLTDEEVDEMIREAD 214
F D NG +SA + +TN +LT EE+D M+ EA+
Sbjct: 87 FALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAE 132
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 27.9 bits (63), Expect = 1.8
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 96 FDKDGNGF--ISAAEL------RHVMTNLGEKLTDEEVDEMIREAD 133
F+ D NG +SA + R + N +LT ++D M+ EA
Sbjct: 87 FNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAK 132
Score = 27.9 bits (63), Expect = 1.8
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 177 FDKDGNGF--ISAAEL------RHVMTNLGEKLTDEEVDEMIREAD 214
F+ D NG +SA + R + N +LT ++D M+ EA
Sbjct: 87 FNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAK 132
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 28.5 bits (63), Expect = 1.9
Identities = 10/101 (9%), Positives = 28/101 (27%), Gaps = 21/101 (20%)
Query: 93 FRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPE 152
V+D G I + + +L + +++ + ++ G D
Sbjct: 138 LNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVA---------SSTGFCDQRR 188
Query: 153 FLTMM------------ARKMKDTDSEEEIREAFRVFDKDG 181
++ ++ E +R F+ +
Sbjct: 189 LGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKP 229
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog,
iodide ION S phasing, structural genomics; HET: PG4 PGE;
1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Length = 107
Score = 26.7 bits (59), Expect = 3.2
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 116 LGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFR 175
L LT++EV + D G + + + + ++ + EEI +
Sbjct: 40 LKRSLTEDEVVRAAQAILRSTD------GQSPVTDDDIRNAVHQIIEKEPTAEEIN---Q 90
Query: 176 V 176
V
Sbjct: 91 V 91
Score = 25.9 bits (57), Expect = 5.9
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 197 LGEKLTDEEVDEMIRE--ADIDGDGQVNYE 224
L LT++EV + DG V +
Sbjct: 40 LKRSLTEDEVVRAAQAILRSTDGQSPVTDD 69
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside
hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ;
1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A*
2jjb_A* 2wyn_A*
Length = 535
Score = 27.9 bits (61), Expect = 3.3
Identities = 15/124 (12%), Positives = 32/124 (25%), Gaps = 9/124 (7%)
Query: 119 KLTDEEVDEMIREADIDG----DGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAF 174
+ V E D G + Y P F +M + + + +++
Sbjct: 145 DKVADMVANFAHEIDTYGHIPNGNRSYYLSRS---QPPFFALMVELLAQHEGDAALKQYL 201
Query: 175 RVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVYTIYCVHIM 234
K+ ++ ++ EK + D + D E +
Sbjct: 202 PQMQKEYAYWMDGV--ENLQAGQQEKRVVKLQDGTLLNRYWDDRDTPRPESWVEDIATAK 259
Query: 235 GNTY 238
N
Sbjct: 260 SNPN 263
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 26.9 bits (59), Expect = 4.3
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 7/61 (11%)
Query: 81 KDTDSEEEIREAFRVFDKDGNGFISAAELRHVM-------TNLGEKLTDEEVDEMIREAD 133
+D S E ++ + D D +G I E + + D+ I D
Sbjct: 9 EDRFSLEALQTIHKQMDDDKDGGIEVEESDEFIREDMKYKDATNKHSHLHREDKHITIED 68
Query: 134 I 134
+
Sbjct: 69 L 69
Score = 26.9 bits (59), Expect = 4.3
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 7/61 (11%)
Query: 162 KDTDSEEEIREAFRVFDKDGNGFISAAELRHVM-------TNLGEKLTDEEVDEMIREAD 214
+D S E ++ + D D +G I E + + D+ I D
Sbjct: 9 EDRFSLEALQTIHKQMDDDKDGGIEVEESDEFIREDMKYKDATNKHSHLHREDKHITIED 68
Query: 215 I 215
+
Sbjct: 69 L 69
>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding
site, enzyme function initiativ; 1.65A {Bacteroides
thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A
Length = 229
Score = 27.1 bits (60), Expect = 4.4
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 118 EKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAF 174
+K+ + ++E +DG E G I EF + M S+++I A+
Sbjct: 52 KKIGFQNIEEKFCTHQLDGIFL-QQE-KGLITPAEFRDGIREMMGKMVSDKQIDAAW 106
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly,
membrane coat, nucleocytoplasmic transport,
beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB:
3h7n_A 3hxr_A
Length = 729
Score = 27.4 bits (60), Expect = 4.7
Identities = 11/88 (12%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
Query: 71 EFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIR 130
+FL ++ ++ D+ + E + +F L+ + L ++++I
Sbjct: 531 KFLDIITGELPDSMTTVE--KFTDIFKNCLENQFEITNLKILFDELNSFDIPVVLNDLI- 587
Query: 131 EADIDGDGQVNYEGNGTIDFPEFLTMMA 158
+ + I F F ++++
Sbjct: 588 NNQMKPGIFWKKDFISAIKFDGFTSIIS 615
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote
structure initiative, NEW YORK SGX research center for
STRU genomics; 1.88A {Caenorhabditis elegans}
Length = 481
Score = 27.5 bits (62), Expect = 5.0
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 39/102 (38%)
Query: 83 TDSEEEIREAFRVF-------DKDGNGFISAAELRHVMT---NLGEKLTD---------- 122
+D + I EA +F G G A +L++V + + +
Sbjct: 78 SDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTV 137
Query: 123 -----EEVDEMIREADIDGDGQVNYEGNGTIDF-----PEFL 154
E + ++REA + + + F PEFL
Sbjct: 138 PVKAAESIGCILREAQKNNEN---------LKFQVLSNPEFL 170
>1wzd_A Heme oxygenase; electron-transfer, artificial metalloprotein; HET:
YOK; 1.35A {Corynebacterium diphtheriae} SCOP: a.132.1.1
PDB: 1iw1_A* 1v8x_A* 1iw0_A* 1wzf_A* 1wzg_A* 2z68_A*
3i8r_A* 3moo_A* 1wnw_A* 1wnx_A* 1wnv_A*
Length = 215
Score = 27.0 bits (59), Expect = 5.4
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 75 MMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 132
++AR M+ + F F+ + E R + NL L+DE+ + +++EA
Sbjct: 142 VIARMMQRHYGVDPEALGFYHFEGIAKLKVYKDEYREKLNNLE--LSDEQREHLLKEA 197
Score = 27.0 bits (59), Expect = 5.4
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 156 MMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 213
++AR M+ + F F+ + E R + NL L+DE+ + +++EA
Sbjct: 142 VIARMMQRHYGVDPEALGFYHFEGIAKLKVYKDEYREKLNNLE--LSDEQREHLLKEA 197
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 27.1 bits (60), Expect = 5.9
Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 26/125 (20%)
Query: 83 TDSEEEIREAFRV-----------FDKDGNGFISA---AELRHVMTNLGEKLTDEEVDEM 128
+ + EA+RV N + + + +M
Sbjct: 117 PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKM 176
Query: 129 IREADIDGDGQVNYEG-NGTIDFPEFLTMMARKMKD--------TDSEEEIREAFRVFDK 179
+ EA G + T F ++ M + E + F++ +
Sbjct: 177 LEEA---GFELEELHCFHKTFIFEDWCDRMNVTTEKKQELSDFIKSKPTEYYQKFKIVVE 233
Query: 180 DGNGF 184
DG +
Sbjct: 234 DGRVY 238
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha
& beta protein, PLP-dependent transferase, aminotransf
mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB:
2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Length = 425
Score = 26.9 bits (60), Expect = 6.8
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 67 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFIS 105
+++ F+T + + IR + + IS
Sbjct: 1 MNYARFITAASAARNPS----PIRTMTDILSRGPKSMIS 35
Score = 26.9 bits (60), Expect = 6.8
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 148 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFIS 186
+++ F+T + + IR + + IS
Sbjct: 1 MNYARFITAASAARNPS----PIRTMTDILSRGPKSMIS 35
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 27.0 bits (60), Expect = 6.9
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 35/112 (31%)
Query: 120 LTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDK 179
+T E+ +MI++A I + E D E A +F
Sbjct: 379 ITTRELAKMIKDAKIPFAKLEDSE----ADPA---------------MGEYSGAGAIFGA 419
Query: 180 DGNGFISAAELRHVMTNLGEKLTDEEVDEM----------IREADIDGDGQV 221
G G + AA LR + + E++++ I+EA+++ +
Sbjct: 420 TG-GVMEAA-LRSA----KDFAENAELEDIEYKQVRGLNGIKEAEVEINNNK 465
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 26.8 bits (60), Expect = 6.9
Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 15/70 (21%)
Query: 72 FLTMMARKMKD--------TDSEEEIREAFRVFDKDGNGFISAAELRH-------VMTNL 116
F +M ++ E E+R+ F + + ++ + + +
Sbjct: 20 FQSMSTHPIQKAFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTA 79
Query: 117 GEKLTDEEVD 126
E +T E +
Sbjct: 80 TEAITAEVIR 89
Score = 26.8 bits (60), Expect = 6.9
Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 15/70 (21%)
Query: 153 FLTMMARKMKD--------TDSEEEIREAFRVFDKDGNGFISAAELRH-------VMTNL 197
F +M ++ E E+R+ F + + ++ + + +
Sbjct: 20 FQSMSTHPIQKAFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTA 79
Query: 198 GEKLTDEEVD 207
E +T E +
Sbjct: 80 TEAITAEVIR 89
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 26.8 bits (60), Expect = 6.9
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 96 FDKDGNGFI--SAAEL-----RHVMTNLGEKLTDEEVDEMIREA 132
FD D NG + A +L + + L++EE+ MI+EA
Sbjct: 445 FDIDANGIVHVRAKDLGTNKEQSITIKSSSGLSEEEIQRMIKEA 488
Score = 26.8 bits (60), Expect = 6.9
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 177 FDKDGNGFI--SAAEL-----RHVMTNLGEKLTDEEVDEMIREA 213
FD D NG + A +L + + L++EE+ MI+EA
Sbjct: 445 FDIDANGIVHVRAKDLGTNKEQSITIKSSSGLSEEEIQRMIKEA 488
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
hydrogene metabolism, periplasm; 1.60A {Desulfovibrio
vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A*
1gx7_A*
Length = 421
Score = 27.0 bits (60), Expect = 7.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 120 LTDEEVDEMIREADID 135
LT E+ MI++A ID
Sbjct: 258 LTTRELAYMIKKAGID 273
Score = 27.0 bits (60), Expect = 7.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 201 LTDEEVDEMIREADID 216
LT E+ MI++A ID
Sbjct: 258 LTTRELAYMIKKAGID 273
>1zd1_A Sulfotransferase 4A1; SGC, SULT4A1, structural genomics, structural
genomics conso transferase; 2.24A {Homo sapiens}
Length = 284
Score = 26.6 bits (59), Expect = 7.6
Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 14/73 (19%)
Query: 107 AELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGN----GTI-DFPEFLT------ 155
+ + LG +++ + D N E G + + + T
Sbjct: 205 TMVEQLARFLGVSCDKAQLEALTEHCHQLVDQCCNAEALPVGRGRVGLWKDIFTVSMNEK 264
Query: 156 ---MMARKMKDTD 165
+ +KM D
Sbjct: 265 FDLVYKQKMGKCD 277
>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel,
peptide synthesis, transition state analogue; HET: P2S
ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB:
1v4g_A* 2d32_A* 2d33_A*
Length = 518
Score = 26.7 bits (58), Expect = 7.8
Identities = 17/123 (13%), Positives = 31/123 (25%), Gaps = 1/123 (0%)
Query: 32 TEAELQDMINEVDADENVESNLQYAELFVYHGNGTIDFPEFLTMMARKMKDTDSEEEIRE 91
E + + A+ NG + + + + D R
Sbjct: 393 IGCETAQFPLPQVGKDLFRDLKRVAQTL-DSINGGEAYQKVCDELVACFDNPDLTFSARI 451
Query: 92 AFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEGNGTIDFP 151
+ D G A + E L ++ + E + Q E T F
Sbjct: 452 LRSMIDTGIGGTGKAFAEAYRNLLREEPLEILREEDFVAEREASERRQQEMEAADTEPFA 511
Query: 152 EFL 154
+L
Sbjct: 512 VWL 514
>2ccl_B Endo-1,4-beta-xylanase Y; cell adhesion, cohesin/dockerin complex,
cellulosome, cohesi dockerin, scaffolding, cellulose
degradation; 2.03A {Clostridium thermocellum} SCOP:
a.139.1.1 PDB: 1ohz_B
Length = 63
Score = 24.8 bits (55), Expect = 7.9
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 97 DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 141
D +G+G I++ +L + ++ +T D+ AD+D +G +N
Sbjct: 6 DVNGDGTINSTDLTMLKRSVLRAIT--LTDDAKARADVDKNGSIN 48
Score = 24.8 bits (55), Expect = 7.9
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 178 DKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 222
D +G+G I++ +L + ++ +T D+ AD+D +G +N
Sbjct: 6 DVNGDGTINSTDLTMLKRSVLRAIT--LTDDAKARADVDKNGSIN 48
>3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster,
insertion, biosynthesis, maturation, intermediate,
evolution; 1.97A {Chlamydomonas reinhardtii}
Length = 457
Score = 26.4 bits (58), Expect = 9.0
Identities = 14/107 (13%), Positives = 25/107 (23%), Gaps = 27/107 (25%)
Query: 120 LTDEEVDEMIREADIDGDGQVNYEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDK 179
+T E+ + +E I+ E E E V
Sbjct: 212 ITTVELGNIFKERG--------------INLAEL------------PEGEWDNPMGVGSG 245
Query: 180 DGNGF-ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEV 225
G F + + + E T + + DG +
Sbjct: 246 AGVLFGTTGGVMEAALRTAYELFTGTPLPRLSLSEVRGMDGIKETNI 292
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.135 0.375
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,167,867
Number of extensions: 280449
Number of successful extensions: 3622
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1959
Number of HSP's successfully gapped: 660
Length of query: 243
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 152
Effective length of database: 4,160,982
Effective search space: 632469264
Effective search space used: 632469264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.2 bits)