Query psy7437
Match_columns 279
No_of_seqs 90 out of 110
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 18:16:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0115|consensus 100.0 1.8E-52 3.9E-57 382.8 -0.1 216 2-260 57-273 (275)
2 PF08075 NOPS: NOPS (NUC059) d 99.9 1.1E-27 2.4E-32 174.3 2.3 52 50-102 1-52 (52)
3 KOG0115|consensus 98.1 3.5E-07 7.7E-12 85.5 -2.4 151 73-224 4-240 (275)
4 KOG0149|consensus 96.6 0.0018 3.8E-08 60.5 3.5 34 2-35 38-72 (247)
5 smart00362 RRM_2 RNA recogniti 96.4 0.0074 1.6E-07 40.2 4.7 46 3-53 26-71 (72)
6 PF00076 RRM_1: RNA recognitio 96.2 0.0041 8.8E-08 42.9 2.7 39 2-40 24-62 (70)
7 smart00361 RRM_1 RNA recogniti 96.1 0.009 1.9E-07 43.7 4.2 41 2-42 18-62 (70)
8 TIGR01628 PABP-1234 polyadenyl 95.9 0.013 2.8E-07 57.5 5.2 53 2-58 311-363 (562)
9 smart00360 RRM RNA recognition 95.8 0.029 6.3E-07 37.0 5.2 47 3-53 23-70 (71)
10 PLN03134 glycine-rich RNA-bind 95.6 0.021 4.5E-07 48.0 4.9 52 2-57 60-112 (144)
11 COG0724 RNA-binding proteins ( 95.4 0.03 6.6E-07 45.1 5.0 52 2-57 141-193 (306)
12 TIGR01659 sex-lethal sex-letha 95.2 0.031 6.7E-07 53.5 5.1 55 2-58 219-274 (346)
13 TIGR01628 PABP-1234 polyadenyl 95.0 0.037 8E-07 54.3 5.1 57 2-58 204-260 (562)
14 cd00590 RRM RRM (RNA recogniti 94.6 0.063 1.4E-06 35.8 4.1 49 2-54 25-73 (74)
15 PF14259 RRM_6: RNA recognitio 94.5 0.045 9.8E-07 38.6 3.4 37 2-38 24-60 (70)
16 KOG1029|consensus 94.0 4.6 0.0001 44.1 18.0 11 84-94 305-315 (1118)
17 TIGR01661 ELAV_HUD_SF ELAV/HuD 94.0 0.093 2E-06 47.6 5.0 55 2-58 115-170 (352)
18 TIGR01661 ELAV_HUD_SF ELAV/HuD 93.7 0.1 2.2E-06 47.4 4.8 51 2-56 29-80 (352)
19 TIGR01659 sex-lethal sex-letha 93.3 0.13 2.8E-06 49.3 4.9 51 2-56 133-184 (346)
20 TIGR01642 U2AF_lg U2 snRNP aux 92.5 0.23 4.9E-06 47.7 5.3 51 2-56 321-372 (509)
21 TIGR01622 SF-CC1 splicing fact 92.4 0.19 4.2E-06 47.5 4.8 50 2-56 115-165 (457)
22 KOG0123|consensus 92.4 0.14 2.9E-06 49.7 3.8 38 3-40 297-334 (369)
23 KOG1029|consensus 91.8 14 0.00029 40.7 17.7 16 99-114 331-346 (1118)
24 PF13893 RRM_5: RNA recognitio 91.7 0.39 8.3E-06 33.1 4.5 35 17-55 21-55 (56)
25 KOG0144|consensus 91.7 0.19 4.1E-06 50.9 4.0 62 2-64 150-211 (510)
26 PLN03120 nucleic acid binding 91.0 0.47 1E-05 44.8 5.6 53 2-61 30-82 (260)
27 KOG0148|consensus 90.8 0.24 5.2E-06 47.8 3.6 41 2-43 88-129 (321)
28 TIGR01622 SF-CC1 splicing fact 90.3 0.41 8.9E-06 45.4 4.6 52 2-57 212-264 (457)
29 TIGR01648 hnRNP-R-Q heterogene 89.5 0.42 9.1E-06 49.3 4.3 39 2-40 84-122 (578)
30 TIGR01645 half-pint poly-U bin 89.1 0.45 9.8E-06 49.4 4.2 41 2-43 133-174 (612)
31 TIGR01642 U2AF_lg U2 snRNP aux 88.6 0.63 1.4E-05 44.7 4.6 52 3-58 446-501 (509)
32 TIGR01645 half-pint poly-U bin 88.1 0.53 1.2E-05 48.9 4.0 37 2-38 230-267 (612)
33 PLN03121 nucleic acid binding 87.6 1.1 2.3E-05 42.2 5.2 50 2-58 31-80 (243)
34 TIGR01649 hnRNP-L_PTB hnRNP-L/ 86.5 0.99 2.1E-05 44.3 4.6 37 6-42 425-461 (481)
35 PTZ00121 MAEBL; Provisional 81.7 1.2E+02 0.0026 36.0 22.7 18 35-52 985-1002(2084)
36 KOG0147|consensus 80.7 1.8 3.9E-05 44.8 3.9 42 2-45 304-346 (549)
37 TIGR01648 hnRNP-R-Q heterogene 80.4 2.9 6.2E-05 43.4 5.2 46 11-58 176-221 (578)
38 KOG4208|consensus 77.9 1.8 3.8E-05 40.2 2.6 42 14-57 89-130 (214)
39 KOG4211|consensus 77.6 1.8 4E-05 44.4 2.8 32 8-39 136-167 (510)
40 KOG4661|consensus 77.4 48 0.0011 35.7 12.9 20 227-247 692-711 (940)
41 KOG0123|consensus 76.8 4.3 9.2E-05 39.6 5.0 39 2-42 24-62 (369)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 74.5 5 0.00011 39.5 4.9 47 2-56 302-348 (481)
43 PF12037 DUF3523: Domain of un 74.1 87 0.0019 30.2 16.6 45 95-143 44-88 (276)
44 KOG0226|consensus 72.2 2.6 5.6E-05 40.6 2.2 39 4-43 218-257 (290)
45 KOG0127|consensus 72.1 5.3 0.00012 42.0 4.5 44 2-45 318-366 (678)
46 KOG0108|consensus 70.8 5.2 0.00011 40.3 4.0 47 8-58 49-97 (435)
47 KOG0113|consensus 69.2 5.2 0.00011 39.2 3.5 49 2-54 127-176 (335)
48 KOG4212|consensus 67.6 5.3 0.00011 41.2 3.3 48 3-54 72-119 (608)
49 KOG0125|consensus 65.7 5 0.00011 39.8 2.7 32 6-38 126-157 (376)
50 KOG0163|consensus 64.7 2.5E+02 0.0053 31.7 15.2 6 165-170 956-961 (1259)
51 PTZ00121 MAEBL; Provisional 63.0 3.3E+02 0.0073 32.7 17.3 22 24-50 994-1015(2084)
52 PTZ00266 NIMA-related protein 62.9 2.1E+02 0.0045 32.3 14.4 6 239-244 532-537 (1021)
53 KOG4211|consensus 62.2 8.3 0.00018 39.8 3.6 36 3-39 36-71 (510)
54 KOG0117|consensus 60.8 7.8 0.00017 39.8 3.1 82 8-89 115-235 (506)
55 KOG0111|consensus 58.3 9.5 0.00021 36.5 3.0 58 12-90 47-104 (298)
56 KOG0533|consensus 58.3 12 0.00026 35.1 3.6 44 2-47 109-152 (243)
57 KOG1365|consensus 58.2 6.5 0.00014 40.0 2.0 47 8-58 315-361 (508)
58 KOG0110|consensus 53.7 8.7 0.00019 41.1 2.2 23 16-38 559-581 (725)
59 PF11339 DUF3141: Protein of u 53.2 15 0.00033 38.5 3.7 51 4-56 68-118 (581)
60 KOG4209|consensus 52.9 17 0.00036 33.5 3.7 51 3-58 128-179 (231)
61 PF13827 DUF4189: Domain of un 50.4 24 0.00052 27.4 3.7 49 8-56 5-57 (100)
62 smart00359 PUA Putative RNA-bi 50.1 9.5 0.00021 27.5 1.3 22 5-26 35-56 (77)
63 KOG0145|consensus 47.6 17 0.00036 35.6 2.9 44 2-46 67-111 (360)
64 KOG0117|consensus 46.6 35 0.00075 35.3 5.0 52 11-64 202-253 (506)
65 KOG0127|consensus 43.6 30 0.00065 36.7 4.1 42 14-59 155-196 (678)
66 PF01071 GARS_A: Phosphoribosy 43.1 28 0.00061 31.5 3.5 47 8-56 41-88 (194)
67 KOG0131|consensus 42.4 30 0.00065 32.1 3.5 43 12-58 134-176 (203)
68 KOG1144|consensus 42.0 2.1E+02 0.0045 32.1 10.1 26 180-205 218-243 (1064)
69 PRK09772 transcriptional antit 40.4 14 0.00031 33.8 1.2 38 6-45 13-53 (278)
70 PF12037 DUF3523: Domain of un 39.4 3.7E+02 0.0079 26.1 18.7 28 230-257 191-218 (276)
71 COG0093 RplN Ribosomal protein 39.3 27 0.00058 30.2 2.6 41 5-53 82-122 (122)
72 KOG4205|consensus 33.8 31 0.00067 33.4 2.4 56 3-65 33-89 (311)
73 PF03330 DPBB_1: Rare lipoprot 33.7 32 0.0007 25.6 2.0 35 6-42 40-74 (78)
74 KOG0145|consensus 32.5 44 0.00096 32.8 3.2 47 8-56 159-206 (360)
75 PF06102 DUF947: Domain of unk 32.4 3.5E+02 0.0076 23.8 9.9 39 84-122 35-75 (168)
76 PF11217 DUF3013: Protein of u 31.9 18 0.00038 32.4 0.4 21 5-25 46-66 (160)
77 KOG1365|consensus 31.6 56 0.0012 33.6 3.8 33 4-36 193-225 (508)
78 KOG3634|consensus 30.1 5.2E+02 0.011 26.1 10.0 13 209-221 153-165 (361)
79 PF03123 CAT_RBD: CAT RNA bind 28.7 27 0.00058 26.1 0.8 39 6-46 11-52 (59)
80 PF04059 RRM_2: RNA recognitio 28.3 80 0.0017 25.7 3.5 46 13-58 41-86 (97)
81 PF09011 HMG_box_2: HMG-box do 27.8 1.4E+02 0.0031 21.8 4.6 41 87-130 29-69 (73)
82 TIGR02137 HSK-PSP phosphoserin 27.1 64 0.0014 28.4 3.0 38 8-45 114-151 (203)
83 KOG0577|consensus 26.6 9.3E+02 0.02 26.9 13.6 18 130-147 647-664 (948)
84 PF07645 EGF_CA: Calcium-bindi 26.2 27 0.0006 23.5 0.5 13 265-277 21-33 (42)
85 COG1443 Idi Isopentenyldiphosp 26.0 42 0.00091 30.8 1.7 17 5-21 4-20 (185)
86 PF11781 RRN7: RNA polymerase 25.8 27 0.00059 23.8 0.4 17 261-277 18-35 (36)
87 KOG0640|consensus 25.7 60 0.0013 32.7 2.8 31 21-52 198-240 (430)
88 TIGR00413 rlpA rare lipoprotei 25.5 73 0.0016 29.6 3.2 45 5-58 49-93 (208)
89 PF11760 CbiG_N: Cobalamin syn 25.3 40 0.00087 27.0 1.3 13 4-16 38-50 (84)
90 PF07123 PsbW: Photosystem II 25.2 6 0.00013 34.6 -3.6 53 7-66 83-137 (138)
91 KOG4207|consensus 24.4 71 0.0015 30.5 2.9 41 7-48 43-85 (256)
92 KOG0146|consensus 23.3 81 0.0018 31.2 3.2 36 3-38 312-348 (371)
93 smart00252 SH2 Src homology 2 23.2 73 0.0016 23.3 2.3 25 25-49 8-32 (84)
94 COG1141 Fer Ferredoxin [Energy 23.1 71 0.0015 24.7 2.3 37 7-43 23-65 (68)
95 KOG3654|consensus 23.0 4.7E+02 0.01 28.2 8.6 8 123-130 382-389 (708)
96 KOG4571|consensus 22.9 5.7E+02 0.012 25.2 8.7 36 155-192 243-278 (294)
97 PRK00409 recombination and DNA 22.6 1E+03 0.022 25.9 12.4 15 4-18 407-421 (782)
98 KOG4307|consensus 22.4 50 0.0011 36.2 1.7 40 14-58 348-388 (944)
99 PF08777 RRM_3: RNA binding mo 21.6 1.4E+02 0.0029 24.2 3.7 51 7-58 28-79 (105)
100 smart00179 EGF_CA Calcium-bind 21.4 61 0.0013 20.0 1.4 14 264-277 19-32 (39)
101 KOG0163|consensus 21.3 1.3E+03 0.027 26.5 17.3 50 190-239 951-1001(1259)
102 PF01472 PUA: PUA domain; Int 21.1 47 0.001 24.8 0.9 23 5-27 35-57 (74)
103 COG4566 TtrR Response regulato 21.1 1.3E+02 0.0027 28.1 3.8 44 2-45 2-55 (202)
104 PF00483 NTP_transferase: Nucl 20.6 21 0.00046 30.5 -1.2 38 6-48 149-186 (248)
105 KOG0146|consensus 20.3 1.8E+02 0.0038 28.9 4.8 47 2-48 45-91 (371)
No 1
>KOG0115|consensus
Probab=100.00 E-value=1.8e-52 Score=382.80 Aligned_cols=216 Identities=37% Similarity=0.484 Sum_probs=194.8
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccccccCchhhhhcccCchhhhhh
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVDDEEGLSERTVSKKSSDYFKQR 81 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~DdeDGLpEK~l~~k~~~f~kER 81 (279)
+||+|||+|||+|++||+|||+|++||+|.+|+++|++|||++|++++||+|+|+++.||+||+|++ +..+++.|.+||
T Consensus 57 ~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~eq~~d~~G~~~k-~~~~~~~~~~e~ 135 (275)
T KOG0115|consen 57 PIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPMEQPDDNDGGPEK-GGGGGPSGPKER 135 (275)
T ss_pred ccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhhccCCCCcchhh-cCCCCCCCCccc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999 678999999999
Q ss_pred ccCCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhHHHHHHHHHHHH
Q psy7437 82 SIGPRFATIGSFEFEYGTRWKQLYELYKQKEEALQKELKLEEEKLEAQMEFAR-YENETEILRERECRFVEEALQKELKL 160 (279)
Q Consensus 82 E~gPRfa~~gsFE~EygqRWK~L~e~eKqqrE~l~reikee~EKLEaEME~a~-~ehq~~lLre~l~r~~~e~~~~~~~~ 160 (279)
+.|||||.+|||+|+|+++||.|++++|++.+.|+.+|+++.+|||++||+|+ |+||++|+|++|+++++++++
T Consensus 136 ~~p~r~a~~g~fe~e~~~~~k~l~~mekq~qd~v~~n~kea~~klE~~me~arghe~q~~l~rq~lmrrqeelrr----- 210 (275)
T KOG0115|consen 136 EQPPRFAQQGSFEVEYGSRWKMLGGMEKQGQDQVDRNIKEAQDKLEAPMEKARGHECQLMLGRQPLMRREEELRR----- 210 (275)
T ss_pred cCCchhccccccccccCccccccccccccCCcccccccchhhhccccccccccCccceeeecCCCcccccHHHHH-----
Confidence 99999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHhhhhHHHHHHhh
Q psy7437 161 EEEKLEAQMEFARYENETEILREQLRQREADRERQKQEWELKERHAEEQRRCDEEAMRRQTEEIHLRMQQQDEELRRRHQ 240 (279)
Q Consensus 161 ~~~kle~qmE~a~~e~e~~~~Rq~l~~rqe~~~rqk~e~em~~r~~ee~rr~~Ee~mrrq~ee~~~r~~~q~~~~~rr~q 240 (279)
|+.. ++++++.|.++..++++.++.. +++++++.. .++++|||
T Consensus 211 --------me~l--~nqe~qkr~~~~~~eee~r~r~----------------~~~~~~~~~-----------~~~~~rqq 253 (275)
T KOG0115|consen 211 --------MEEL--HNQEAKKRKEINLREEEERLRR----------------IEEMDNHEE-----------GEMYRRQQ 253 (275)
T ss_pred --------HHHH--hhHHHHHhhhhhhhHHHHHHHH----------------HHHHhccCc-----------hhcccccc
Confidence 9977 8888888888877776653333 333333321 15679999
Q ss_pred hchhHHHHHHHhhchhhhhh
Q psy7437 241 ENSIFMQVIVWLGDLKQGVY 260 (279)
Q Consensus 241 e~~~~~q~~~~~~~~~~~~~ 260 (279)
|+++|++..-.++..|...+
T Consensus 254 e~~~~~~~y~d~~~~~e~~g 273 (275)
T KOG0115|consen 254 EPGGMFGSYGDNGYPDEKKG 273 (275)
T ss_pred ccCceeccccccCCchhhcc
Confidence 99999998888877776543
No 2
>PF08075 NOPS: NOPS (NUC059) domain; InterPro: IPR012975 This domain is found C-terminal to 1 or 2 IPR000504 from INTERPRO domains [] in NONA and PSP1 proteins.; PDB: 3SDE_B.
Probab=99.93 E-value=1.1e-27 Score=174.28 Aligned_cols=52 Identities=63% Similarity=1.192 Sum_probs=38.8
Q ss_pred ceEeecCcccccccCchhhhhcccCchhhhhhccCCCCCCCCCchhhhhhhHH
Q psy7437 50 PVIVEPLDLVDDEEGLSERTVSKKSSDYFKQRSIGPRFATIGSFEFEYGTRWK 102 (279)
Q Consensus 50 PviVEp~e~~DdeDGLpEK~l~~k~~~f~kERE~gPRfa~~gsFE~EygqRWK 102 (279)
||||||+++.||+||||||++ +||++|+|||++|||||+||||||+||+|||
T Consensus 1 PvvVEp~e~~DdedGlpEkl~-~k~~~y~kERe~~PRFA~pgsfE~eyg~RWK 52 (52)
T PF08075_consen 1 PVVVEPLEQLDDEDGLPEKLI-KKNPQYHKEREQGPRFAQPGSFEFEYGMRWK 52 (52)
T ss_dssp B-EEEE---EESSS---GGGS---SHHHHHHCTS-SEE--TTSHHHHHHHHHH
T ss_pred CceeccCccccccccchHHHH-HHhHHHHHhhhcCCCcCCCCCcchhhccccC
Confidence 899999999999999999955 6899999999999999999999999999998
No 3
>KOG0115|consensus
Probab=98.06 E-value=3.5e-07 Score=85.45 Aligned_cols=151 Identities=21% Similarity=0.233 Sum_probs=123.7
Q ss_pred cCchhhhhhccCCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHH
Q psy7437 73 KSSDYFKQRSIGPRFATIGSFEFEYGTRWKQLYELYKQKEEALQKELKLEEEKLEAQMEFARYENETEILRERECRFVEE 152 (279)
Q Consensus 73 k~~~f~kERE~gPRfa~~gsFE~EygqRWK~L~e~eKqqrE~l~reikee~EKLEaEME~a~~ehq~~lLre~l~r~~~e 152 (279)
.++.-.++|+.+|+|..+.+|+|-|++. +.|+-..-.+...++-....=..-+..|+.+|+.+.....+|+.+-++...
T Consensus 4 rt~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k 82 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKK 82 (275)
T ss_pred ccHHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcc
Confidence 4667788999999999999999999999 999988777777777666666666789999999999999999998887655
Q ss_pred HHHHHH--------------------------------------------------------------------------
Q psy7437 153 ALQKEL-------------------------------------------------------------------------- 158 (279)
Q Consensus 153 ~~~~~~-------------------------------------------------------------------------- 158 (279)
..+...
T Consensus 83 ~~a~~a~rr~~~~g~~~~~~~~p~~VeP~eq~~d~~G~~~k~~~~~~~~~~e~~~p~r~a~~g~fe~e~~~~~k~l~~me 162 (275)
T KOG0115|consen 83 PNARKAARRCREGGFGGTTGGRPVGVEPMEQPDDNDGGPEKGGGGGPSGPKEREQPPRFAQQGSFEVEYGSRWKMLGGME 162 (275)
T ss_pred hhHHHHHHHhccCccccCCCCCccCCChhhccCCCCcchhhcCCCCCCCCccccCCchhccccccccccCcccccccccc
Confidence 444332
Q ss_pred -----------HHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHH
Q psy7437 159 -----------KLEEEKLEAQMEFAR-YENETEILREQLRQREADRERQKQEWELKERHAEEQRRCDEEAMRRQTEEI 224 (279)
Q Consensus 159 -----------~~~~~kle~qmE~a~-~e~e~~~~Rq~l~~rqe~~~rqk~e~em~~r~~ee~rr~~Ee~mrrq~ee~ 224 (279)
|-..+|||.+|+.|+ |+++++++|++|++++++.+|-...|.+......+.+.+.++.+.|+.++|
T Consensus 163 kq~qd~v~~n~kea~~klE~~me~arghe~q~~l~rq~lmrrqeelrrme~l~nqe~qkr~~~~~~eee~r~r~~~~~ 240 (275)
T KOG0115|consen 163 KQGQDQVDRNIKEAQDKLEAPMEKARGHECQLMLGRQPLMRREEELRRMEELHNQEAKKRKEINLREEEERLRRIEEM 240 (275)
T ss_pred ccCCcccccccchhhhccccccccccCccceeeecCCCcccccHHHHHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 334579999999999 999999999999999999988888888887776666666666666655444
No 4
>KOG0149|consensus
Probab=96.61 E-value=0.0018 Score=60.47 Aligned_cols=34 Identities=41% Similarity=0.570 Sum_probs=30.4
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHH
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALK 35 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~ 35 (279)
+|.-||||+|-- |||.|.|+|-|.---||..|+.
T Consensus 38 eI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~ 72 (247)
T KOG0149|consen 38 EIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK 72 (247)
T ss_pred ceEEEEEEeccCCccccceeeEEeecHHHHHHHhc
Confidence 688999999987 9999999999998888888754
No 5
>smart00362 RRM_2 RNA recognition motif.
Probab=96.42 E-value=0.0074 Score=40.16 Aligned_cols=46 Identities=26% Similarity=0.371 Sum_probs=32.6
Q ss_pred cceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEe
Q psy7437 3 IERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIV 53 (279)
Q Consensus 3 VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviV 53 (279)
|....++.+. |.+.|.|+|+|.+..+|..|+..++. ..+ .-+++.|
T Consensus 26 v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~-~~~---~~~~i~v 71 (72)
T smart00362 26 IESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNG-TKL---GGRPLRV 71 (72)
T ss_pred EEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCC-cEE---CCEEEee
Confidence 4444444444 99999999999999999999987664 333 3455554
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=96.21 E-value=0.0041 Score=42.88 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=34.2
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCC
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDG 40 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg 40 (279)
+|..+.|+.|..|++.|.|+|+|.++..|.+|+..++..
T Consensus 24 ~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 24 KIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp TEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred hcccccccccccccccceEEEEEcCHHHHHHHHHHcCCC
Confidence 466777888888999999999999999999999988763
No 7
>smart00361 RRM_1 RNA recognition motif.
Probab=96.12 E-value=0.009 Score=43.66 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=32.5
Q ss_pred CcceeE-EEeCC-C--CCCCCceeeeccCCHHHHHHHHHccCCce
Q psy7437 2 NIERAV-VLVDD-R--GNSKNEGIIEFTRKPAAAQALKRCQDGVF 42 (279)
Q Consensus 2 ~VERAV-ViVDd-R--GrstGeGiVEFa~Kp~A~kAL~rc~eg~F 42 (279)
+|.+.. |++|. . |+|.|.|+|+|.....|.+|+..+..+-|
T Consensus 18 ~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~ 62 (70)
T smart00361 18 EVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF 62 (70)
T ss_pred CeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 355664 56664 4 89999999999999999999998776544
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=95.85 E-value=0.013 Score=57.49 Aligned_cols=53 Identities=25% Similarity=0.394 Sum_probs=43.8
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.|..+.|+.|+.|+|.|.|+|+|+....|.+||..++.. +| ..+|+.|.....
T Consensus 311 ~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~-~~---~gk~l~V~~a~~ 363 (562)
T TIGR01628 311 EITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGR-ML---GGKPLYVALAQR 363 (562)
T ss_pred CeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCC-ee---CCceeEEEeccC
Confidence 477788999999999999999999999999999877652 22 468888877654
No 9
>smart00360 RRM RNA recognition motif.
Probab=95.78 E-value=0.029 Score=37.02 Aligned_cols=47 Identities=30% Similarity=0.421 Sum_probs=34.7
Q ss_pred cceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEe
Q psy7437 3 IERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIV 53 (279)
Q Consensus 3 VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviV 53 (279)
|....|.-+.. |+++|.|+|+|..-.+|.+|+...+ |..+ .-++|.|
T Consensus 23 v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~-~~~~---~~~~~~v 70 (71)
T smart00360 23 IESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN-GKEL---DGRPLKV 70 (71)
T ss_pred EeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC-CCee---CCcEEEe
Confidence 45555555554 8999999999999999999998777 5554 2355554
No 10
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=95.62 E-value=0.021 Score=48.04 Aligned_cols=52 Identities=25% Similarity=0.411 Sum_probs=41.5
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|....|++|.. |++.|.|+|+|+..-+|.+||..++. ..| .-++|.|.+-.
T Consensus 60 ~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng-~~i---~Gr~l~V~~a~ 112 (144)
T PLN03134 60 DVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDG-KEL---NGRHIRVNPAN 112 (144)
T ss_pred CeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCC-CEE---CCEEEEEEeCC
Confidence 467777888865 99999999999999999999998764 433 34788887753
No 11
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=95.40 E-value=0.03 Score=45.14 Aligned_cols=52 Identities=19% Similarity=0.381 Sum_probs=41.8
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|.++.|.+| ..|++.|.|+|+|.....|..|+...+...| ..+||.|.+..
T Consensus 141 ~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~----~~~~~~v~~~~ 193 (306)
T COG0724 141 PVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL----EGRPLRVQKAQ 193 (306)
T ss_pred ceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE----CCceeEeeccc
Confidence 3556677777 4799999999999999999999998883333 37888888854
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=95.19 E-value=0.031 Score=53.47 Aligned_cols=55 Identities=16% Similarity=0.314 Sum_probs=44.0
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.|.++.|+.|. .|++.|.|+|+|+....|.+||..++.-.| ....+||.|...+.
T Consensus 219 ~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~--~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 219 QIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIP--EGGSQPLTVRLAEE 274 (346)
T ss_pred CEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCcc--CCCceeEEEEECCc
Confidence 46677777776 599999999999999999999999985433 34568999987654
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=94.97 E-value=0.037 Score=54.31 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=47.3
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.|..++|+.|..|+++|.|+|+|...-.|.+|++..+...|.+....+.+.|.....
T Consensus 204 ~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~ 260 (562)
T TIGR01628 204 EITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQK 260 (562)
T ss_pred CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccC
Confidence 477788889999999999999999999999999998877666666677777766543
No 14
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=94.63 E-value=0.063 Score=35.80 Aligned_cols=49 Identities=24% Similarity=0.354 Sum_probs=36.7
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEee
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVE 54 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVE 54 (279)
+|.+..+.-+..+++.|.|+|+|.+..+|..|+..+....| .-++|.|.
T Consensus 25 ~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~----~~~~~~v~ 73 (74)
T cd00590 25 KVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKEL----GGRPLRVE 73 (74)
T ss_pred CEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeE----CCeEEEEe
Confidence 35566667777788999999999999999999998665543 24555543
No 15
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=94.54 E-value=0.045 Score=38.62 Aligned_cols=37 Identities=22% Similarity=0.412 Sum_probs=31.9
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHcc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQ 38 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~ 38 (279)
.|....++-+..|.++|.++|+|+....|.+||..++
T Consensus 24 ~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 24 PVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp BEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC
Confidence 3566667777669999999999999999999999886
No 16
>KOG1029|consensus
Probab=94.03 E-value=4.6 Score=44.11 Aligned_cols=11 Identities=18% Similarity=0.292 Sum_probs=7.4
Q ss_pred CCCCCCCCCch
Q psy7437 84 GPRFATIGSFE 94 (279)
Q Consensus 84 gPRfa~~gsFE 94 (279)
+...+.|-|||
T Consensus 305 ~kklP~~~TFE 315 (1118)
T KOG1029|consen 305 PKKLPAPVTFE 315 (1118)
T ss_pred cccCCCCcchh
Confidence 34566668888
No 17
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=93.99 E-value=0.093 Score=47.61 Aligned_cols=55 Identities=25% Similarity=0.331 Sum_probs=43.1
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.|..+.|++|.. |.+.|.|+|+|+....|.+||..++...+- ...+|+.|..-..
T Consensus 115 ~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~--g~~~~i~v~~a~~ 170 (352)
T TIGR01661 115 QIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS--GCTEPITVKFANN 170 (352)
T ss_pred CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC--CCceeEEEEECCC
Confidence 466777788875 899999999999999999999998765443 3456888876643
No 18
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=93.71 E-value=0.1 Score=47.39 Aligned_cols=51 Identities=24% Similarity=0.347 Sum_probs=39.0
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
+|....|+.|. .|+|.|.|+|+|...-.|.+||..++ |..|. .++|.|+.-
T Consensus 29 ~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~-g~~l~---g~~i~v~~a 80 (352)
T TIGR01661 29 EIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLN-GLRLQ---NKTIKVSYA 80 (352)
T ss_pred CEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcc-cEEEC---CeeEEEEee
Confidence 56677777775 59999999999999999999999775 44442 456666544
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=93.32 E-value=0.13 Score=49.33 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=39.5
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
+|..+.|+.|- .|++.|.|+|+|+...+|.+||...+. ..| ..+||.|.+.
T Consensus 133 ~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG-~~l---~gr~i~V~~a 184 (346)
T TIGR01659 133 PINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNG-ITV---RNKRLKVSYA 184 (346)
T ss_pred CEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCC-Ccc---CCceeeeecc
Confidence 46777777784 599999999999999999999987654 222 3677777654
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=92.46 E-value=0.23 Score=47.68 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=38.0
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
+|..+.|+.|. .|++.|.|+|+|....+|.+||..++.-.| ..+++.|...
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~----~~~~l~v~~a 372 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT----GDNKLHVQRA 372 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE----CCeEEEEEEC
Confidence 45566666664 599999999999999999999998865443 2445666554
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=92.44 E-value=0.19 Score=47.54 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=37.6
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
+|....||.|- .|++.|.|+|+|.....|.+||. . .|..|. .+||+|.+.
T Consensus 115 ~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l-~g~~~~---g~~i~v~~~ 165 (457)
T TIGR01622 115 KVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-L-TGQMLL---GRPIIVQSS 165 (457)
T ss_pred CeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-h-CCCEEC---CeeeEEeec
Confidence 35566677774 49999999999999999999997 3 444443 577887764
No 22
>KOG0123|consensus
Probab=92.42 E-value=0.14 Score=49.74 Aligned_cols=38 Identities=34% Similarity=0.532 Sum_probs=33.5
Q ss_pred cceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCC
Q psy7437 3 IERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDG 40 (279)
Q Consensus 3 VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg 40 (279)
|=.+-|+||+.|+|.|.|+|+|+....|.+|+..++..
T Consensus 297 I~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~ 334 (369)
T KOG0123|consen 297 ITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGR 334 (369)
T ss_pred eeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChh
Confidence 44578999999999999999999999999998877654
No 23
>KOG1029|consensus
Probab=91.84 E-value=14 Score=40.71 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=7.1
Q ss_pred hhHHHHHHHHHHHHHH
Q psy7437 99 TRWKQLYELYKQKEEA 114 (279)
Q Consensus 99 qRWK~L~e~eKqqrE~ 114 (279)
-|-+.|.+-.+..++.
T Consensus 331 rRRq~leeqqqreree 346 (1118)
T KOG1029|consen 331 RRRQALEEQQQREREE 346 (1118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555444333333
No 24
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=91.74 E-value=0.39 Score=33.12 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=28.5
Q ss_pred CCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeec
Q psy7437 17 KNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEP 55 (279)
Q Consensus 17 tGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp 55 (279)
+|.++|+|+...+|.+|+..++.-.| ..+|+-|.+
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~----~g~~l~V~~ 55 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQF----NGRPLKVSY 55 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEE----TTEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEE----CCcEEEEEE
Confidence 79999999999999999999975554 456777653
No 25
>KOG0144|consensus
Probab=91.73 E-value=0.19 Score=50.92 Aligned_cols=62 Identities=27% Similarity=0.435 Sum_probs=54.8
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccccccC
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVDDEEG 64 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~DdeDG 64 (279)
.||-..|.-|+.|.|.|-++|-|+.|--|..||+.++ |.|-.-.+--|+||...|..-|.||
T Consensus 150 ~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~n-g~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 150 HIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALN-GTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred ccchhhheecccccccceeEEEEehHHHHHHHHHhhc-cceeeccCCCceEEEecccCCCchH
Confidence 4788889999999999999999999999999999875 6788888899999999987777666
No 26
>PLN03120 nucleic acid binding protein; Provisional
Probab=91.03 E-value=0.47 Score=44.81 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=41.3
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccccc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVDD 61 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~Dd 61 (279)
+|++..|+.|. .+.|.|+|+|...-+|.+||. -.|+-| ..+||.|.|.+..+.
T Consensus 30 ~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~All--LnG~~l---~gr~V~Vt~a~~~~~ 82 (260)
T PLN03120 30 DIEYVEMQSEN--ERSQIAYVTFKDPQGAETALL--LSGATI---VDQSVTITPAEDYQL 82 (260)
T ss_pred CeEEEEEeecC--CCCCEEEEEeCcHHHHHHHHH--hcCCee---CCceEEEEeccCCCC
Confidence 47777776664 367999999999999999995 456665 489999999865544
No 27
>KOG0148|consensus
Probab=90.83 E-value=0.24 Score=47.78 Aligned_cols=41 Identities=29% Similarity=0.519 Sum_probs=36.6
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCcee
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFF 43 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~Fl 43 (279)
+|.-|-||-|.. |||.|.|+|-|.+|--|-.||...+ |-+|
T Consensus 88 evS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~Mn-GqWl 129 (321)
T KOG0148|consen 88 EVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMN-GQWL 129 (321)
T ss_pred ccccceEeecccCCcccceeEEeccchHHHHHHHHHhC-Ceee
Confidence 578899999988 9999999999999999999999775 5565
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=90.26 E-value=0.41 Score=45.38 Aligned_cols=52 Identities=31% Similarity=0.395 Sum_probs=40.5
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
.|....|+.|.. |++.|.|+|+|.....|.+||..++. +.| ..+||.|....
T Consensus 212 ~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g--~~i--~g~~i~v~~a~ 264 (457)
T TIGR01622 212 DIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNG--FEL--AGRPIKVGYAQ 264 (457)
T ss_pred CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCC--cEE--CCEEEEEEEcc
Confidence 355666666766 69999999999999999999998875 332 46888888743
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=89.50 E-value=0.42 Score=49.28 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=34.5
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCC
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDG 40 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg 40 (279)
+|....|+.|..|+|.|.|+|+|.+.-+|.+||..++..
T Consensus 84 ~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~ 122 (578)
T TIGR01648 84 PIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNY 122 (578)
T ss_pred CEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCC
Confidence 466778899988999999999999999999999987653
No 30
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=89.14 E-value=0.45 Score=49.45 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=34.3
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCcee
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFF 43 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~Fl 43 (279)
+|.+..|+.|. .|+|.|.|+|+|...-+|.+||..++ |..|
T Consensus 133 ~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~ln-G~~i 174 (612)
T TIGR01645 133 PIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMN-GQML 174 (612)
T ss_pred CEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcC-CeEE
Confidence 46777777884 49999999999999999999999884 5555
No 31
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=88.65 E-value=0.63 Score=44.69 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=39.2
Q ss_pred cceeEEEeCC----CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 3 IERAVVLVDD----RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 3 VERAVViVDd----RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
|..++|..+. .|.+.|.++|+|+.--.|.+||..++..-| .-++|+|.-+..
T Consensus 446 v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~----~gr~v~~~~~~~ 501 (509)
T TIGR01642 446 LINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKF----NDRVVVAAFYGE 501 (509)
T ss_pred eeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEE----CCeEEEEEEeCH
Confidence 5555555442 255678889999999999999999987665 568998887644
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=88.15 E-value=0.53 Score=48.93 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=32.2
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHcc
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQ 38 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~ 38 (279)
.|..+.|+.|.. |++.|.|+|+|..+.+|.+||..++
T Consensus 230 ~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amN 267 (612)
T TIGR01645 230 EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 267 (612)
T ss_pred CeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhC
Confidence 467777888865 7899999999999999999999886
No 33
>PLN03121 nucleic acid binding protein; Provisional
Probab=87.59 E-value=1.1 Score=42.23 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=36.3
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|+...++-| |++.|.|+|+|...-+|..||. . .|+=|+ .+||+|.|.+.
T Consensus 31 ~I~~V~I~~D--~et~gfAfVtF~d~~aaetAll-L-nGa~l~---d~~I~It~~~~ 80 (243)
T PLN03121 31 AIEHVEIIRS--GEYACTAYVTFKDAYALETAVL-L-SGATIV---DQRVCITRWGQ 80 (243)
T ss_pred CeEEEEEecC--CCcceEEEEEECCHHHHHHHHh-c-CCCeeC---CceEEEEeCcc
Confidence 3555555544 5777999999999999999994 3 444443 56899999764
No 34
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=86.47 E-value=0.99 Score=44.32 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=29.7
Q ss_pred eEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCce
Q psy7437 6 AVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVF 42 (279)
Q Consensus 6 AVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~F 42 (279)
.|.+++.++.++|-|+|+|...-.|.+||..++.-.+
T Consensus 425 ~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l 461 (481)
T TIGR01649 425 KFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQL 461 (481)
T ss_pred EEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCcc
Confidence 3555666666789999999999999999999875443
No 35
>PTZ00121 MAEBL; Provisional
Probab=81.73 E-value=1.2e+02 Score=36.00 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=11.5
Q ss_pred HHccCCceeecCCCCceE
Q psy7437 35 KRCQDGVFFLTQSLKPVI 52 (279)
Q Consensus 35 ~rc~eg~FlLTtsprPvi 52 (279)
.--...||+|++-|--||
T Consensus 985 ~~~~GkCyi~~~KPTCvI 1002 (2084)
T PTZ00121 985 EIANGECYHILQKPTCVI 1002 (2084)
T ss_pred hhhcCeeEEEecCcccee
Confidence 334567788777776555
No 36
>KOG0147|consensus
Probab=80.65 E-value=1.8 Score=44.76 Aligned_cols=42 Identities=36% Similarity=0.481 Sum_probs=36.0
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeec
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLT 45 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLT 45 (279)
.||-..+.+|. -|++.|.|++.|.++-.|++||...+- |-|.
T Consensus 304 ~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lng--felA 346 (549)
T KOG0147|consen 304 KIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNG--FELA 346 (549)
T ss_pred cceeeeeccccccccccCcceEEEecHHHHHHHHHHhcc--ceec
Confidence 46777888998 599999999999999999999997765 6654
No 37
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=80.37 E-value=2.9 Score=43.36 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=36.2
Q ss_pred CCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 11 DDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 11 DdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
++.|++-|.|+|+|...-+|.+|++.+..+.+.| .-++|.|.+...
T Consensus 176 ~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l--~Gr~I~VdwA~p 221 (578)
T TIGR01648 176 ADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGHVIAVDWAEP 221 (578)
T ss_pred cccCccCceEEEEcCCHHHHHHHHHHhhccceEe--cCceEEEEeecc
Confidence 4568999999999999999999999887776544 246677776554
No 38
>KOG4208|consensus
Probab=77.93 E-value=1.8 Score=40.20 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=35.6
Q ss_pred CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 14 GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 14 GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
|+|.|+|+|||.++-.|.-|-+-++. |||---+=-|.|-|-+
T Consensus 89 GNSKgYAFVEFEs~eVA~IaAETMNN--YLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 89 GNSKGYAFVEFESEEVAKIAAETMNN--YLLMEHLLECHVMPPE 130 (214)
T ss_pred CCcCceEEEEeccHHHHHHHHHHhhh--hhhhhheeeeEEeCch
Confidence 99999999999999999999887764 7766777778887765
No 39
>KOG4211|consensus
Probab=77.57 E-value=1.8 Score=44.35 Aligned_cols=32 Identities=28% Similarity=0.535 Sum_probs=27.9
Q ss_pred EEeCCCCCCCCceeeeccCCHHHHHHHHHccC
Q psy7437 8 VLVDDRGNSKNEGIIEFTRKPAAAQALKRCQD 39 (279)
Q Consensus 8 ViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~e 39 (279)
.++|-||||||+-+|-|+..-.|.+||.+..+
T Consensus 136 l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre 167 (510)
T KOG4211|consen 136 LPMDQRGRPTGEAFVQFESQESAEIALGRHRE 167 (510)
T ss_pred eeccCCCCcccceEEEecCHHHHHHHHHHHHH
Confidence 46777899999999999999999999876543
No 40
>KOG4661|consensus
Probab=77.41 E-value=48 Score=35.67 Aligned_cols=20 Identities=45% Similarity=0.687 Sum_probs=12.9
Q ss_pred HHhhhhHHHHHHhhhchhHHH
Q psy7437 227 RMQQQDEELRRRHQENSIFMQ 247 (279)
Q Consensus 227 r~~~q~~~~~rr~qe~~~~~q 247 (279)
|+.+..+++ ||||+--.|-|
T Consensus 692 RihreReel-Rrqqetlryeq 711 (940)
T KOG4661|consen 692 RIHREREEL-RRQQETLRYEQ 711 (940)
T ss_pred hhhhhHHHH-hhccceeeecc
Confidence 556666665 56777766655
No 41
>KOG0123|consensus
Probab=76.79 E-value=4.3 Score=39.60 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=33.5
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCce
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVF 42 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~F 42 (279)
+|-.+-|++|- | |.|.|+|-|..+--|-+||+..+-.++
T Consensus 24 ~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~ 62 (369)
T KOG0123|consen 24 PVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVL 62 (369)
T ss_pred CceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCccc
Confidence 56778899999 9 999999999999999999998665443
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=74.49 E-value=5 Score=39.47 Aligned_cols=47 Identities=28% Similarity=0.309 Sum_probs=36.1
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
.|.++.|+.|. .|.|+|+|+....|..||..++...| .-+|+-|.+-
T Consensus 302 ~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l----~g~~l~v~~s 348 (481)
T TIGR01649 302 NVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKL----FGKPLRVCPS 348 (481)
T ss_pred CeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEE----CCceEEEEEc
Confidence 46677777773 48999999999999999998876544 2467777654
No 43
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=74.14 E-value=87 Score=30.22 Aligned_cols=45 Identities=33% Similarity=0.377 Sum_probs=24.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy7437 95 FEYGTRWKQLYELYKQKEEALQKELKLEEEKLEAQMEFARYENETEILR 143 (279)
Q Consensus 95 ~EygqRWK~L~e~eKqqrE~l~reikee~EKLEaEME~a~~ehq~~lLr 143 (279)
.+-+..+|.+.++.|.|-...-.+...+. +|++.+...+.++-.|
T Consensus 44 l~~S~~Ak~afel~k~QE~TkQ~E~~ak~----~e~ea~~~q~~~e~~r 88 (276)
T PF12037_consen 44 LNSSPHAKKAFELMKKQEETKQAELQAKI----AEYEAAQAQAEIERQR 88 (276)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 33445678778887776666544444433 2334444444444443
No 44
>KOG0226|consensus
Probab=72.21 E-value=2.6 Score=40.57 Aligned_cols=39 Identities=28% Similarity=0.561 Sum_probs=32.2
Q ss_pred ceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCcee
Q psy7437 4 ERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFF 43 (279)
Q Consensus 4 ERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~Fl 43 (279)
-+|-||-|-| |+|.|.|+|-|..-..+..|++-. +|-|.
T Consensus 218 ~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem-~gkyV 257 (290)
T KOG0226|consen 218 QKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREM-NGKYV 257 (290)
T ss_pred hhccccccccccccccceeeeecCHHHHHHHHHhh-ccccc
Confidence 3688999999 999999999999988899998843 34443
No 45
>KOG0127|consensus
Probab=72.13 E-value=5.3 Score=42.02 Aligned_cols=44 Identities=25% Similarity=0.530 Sum_probs=36.7
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHc----cCCceeec
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRC----QDGVFFLT 45 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc----~eg~FlLT 45 (279)
+|.-|+++.|-- |+|.|-++|-|..--+|++||... ..|.|||-
T Consensus 318 ~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~ 366 (678)
T KOG0127|consen 318 EVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD 366 (678)
T ss_pred cceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence 466676666644 999999999999999999999999 67777765
No 46
>KOG0108|consensus
Probab=70.84 E-value=5.2 Score=40.28 Aligned_cols=47 Identities=30% Similarity=0.374 Sum_probs=35.3
Q ss_pred EEeCCC--CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 8 VLVDDR--GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 8 ViVDdR--GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
=+|+|+ |+++|.|+++|..--.|..|++-.+---| +.|++-|..-..
T Consensus 49 ~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~----~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 49 RLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF----NGRKLRVNYASN 97 (435)
T ss_pred eecccccCCCcCceeeEecCchhhHHHHHHhcCCccc----CCceEEeecccc
Confidence 467777 99999999999998889999987775433 355555555444
No 47
>KOG0113|consensus
Probab=69.21 E-value=5.2 Score=39.22 Aligned_cols=49 Identities=24% Similarity=0.391 Sum_probs=37.2
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEee
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVE 54 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVE 54 (279)
+|++-.+|-| .-|+|.|.+||||...-.-.+|++... |.-+ --+-|||.
T Consensus 127 ~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ad-G~~I---dgrri~VD 176 (335)
T KOG0113|consen 127 PIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDAD-GIKI---DGRRILVD 176 (335)
T ss_pred cceeEEEeeecccCCccceEEEEeccHHHHHHHHHhcc-Ccee---cCcEEEEE
Confidence 5788777777 459999999999999999888888654 5433 34556664
No 48
>KOG4212|consensus
Probab=67.59 E-value=5.3 Score=41.25 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=36.1
Q ss_pred cceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEee
Q psy7437 3 IERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVE 54 (279)
Q Consensus 3 VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVE 54 (279)
|+=.-+..|..|||.|-+||||.-.-++.||++..+-= .-+-||+||.
T Consensus 72 v~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~----~~~GR~l~vK 119 (608)
T KOG4212|consen 72 VEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKY----EVNGRELVVK 119 (608)
T ss_pred eEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhc----cccCceEEEe
Confidence 44455678999999999999999999999999876531 2345555553
No 49
>KOG0125|consensus
Probab=65.73 E-value=5 Score=39.82 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=26.1
Q ss_pred eEEEeCCCCCCCCceeeeccCCHHHHHHHHHcc
Q psy7437 6 AVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQ 38 (279)
Q Consensus 6 AVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~ 38 (279)
.=||.+||| |.|.|+|-|.+--.|-+|=....
T Consensus 126 VEIIfNERG-SKGFGFVTmen~~dadRARa~LH 157 (376)
T KOG0125|consen 126 VEIIFNERG-SKGFGFVTMENPADADRARAELH 157 (376)
T ss_pred EEEEeccCC-CCccceEEecChhhHHHHHHHhh
Confidence 348899997 89999999999888877765544
No 50
>KOG0163|consensus
Probab=64.65 E-value=2.5e+02 Score=31.69 Aligned_cols=6 Identities=50% Similarity=0.667 Sum_probs=2.4
Q ss_pred HHHHHH
Q psy7437 165 LEAQME 170 (279)
Q Consensus 165 le~qmE 170 (279)
++++|+
T Consensus 956 ~k~e~e 961 (1259)
T KOG0163|consen 956 AKAEME 961 (1259)
T ss_pred HHHHHH
Confidence 334444
No 51
>PTZ00121 MAEBL; Provisional
Probab=62.99 E-value=3.3e+02 Score=32.68 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=13.2
Q ss_pred ccCCHHHHHHHHHccCCceeecCCCCc
Q psy7437 24 FTRKPAAAQALKRCQDGVFFLTQSLKP 50 (279)
Q Consensus 24 Fa~Kp~A~kAL~rc~eg~FlLTtsprP 50 (279)
|..||.+. |....||-||++-.
T Consensus 994 ~~~KPTCv-----I~k~N~fsfTALss 1015 (2084)
T PTZ00121 994 ILQKPTCV-----IDKENHFSFTALTA 1015 (2084)
T ss_pred EecCccce-----ecCcchhhhhhccc
Confidence 55666654 45666777766543
No 52
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=62.89 E-value=2.1e+02 Score=32.27 Aligned_cols=6 Identities=33% Similarity=0.457 Sum_probs=2.9
Q ss_pred hhhchh
Q psy7437 239 HQENSI 244 (279)
Q Consensus 239 ~qe~~~ 244 (279)
.++|.+
T Consensus 532 ~~~~~~ 537 (1021)
T PTZ00266 532 GMENGL 537 (1021)
T ss_pred hccccc
Confidence 345544
No 53
>KOG4211|consensus
Probab=62.23 E-value=8.3 Score=39.79 Aligned_cols=36 Identities=28% Similarity=0.473 Sum_probs=31.5
Q ss_pred cceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccC
Q psy7437 3 IERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQD 39 (279)
Q Consensus 3 VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~e 39 (279)
|++ ++|+-+.||++|+-+|||.+---+.+||++-.+
T Consensus 36 I~~-~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~ 71 (510)
T KOG4211|consen 36 IEN-LEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRE 71 (510)
T ss_pred eeE-EEEeccCCCcCcceEEEeechHHHHHHHHhhHH
Confidence 566 788888899999999999999999999987554
No 54
>KOG0117|consensus
Probab=60.85 E-value=7.8 Score=39.82 Aligned_cols=82 Identities=17% Similarity=0.266 Sum_probs=55.2
Q ss_pred EEeC-CCCCCCCceeeeccCCHHHHHHHHHccCC----------------c-eeecC-----------------CCCceE
Q psy7437 8 VLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDG----------------V-FFLTQ-----------------SLKPVI 52 (279)
Q Consensus 8 ViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg----------------~-FlLTt-----------------sprPvi 52 (279)
++.| +.|.+.|..+|-|.+|-.|.+|++-|+.- | .||.. ++--|.
T Consensus 115 LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvd 194 (506)
T KOG0117|consen 115 LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVD 194 (506)
T ss_pred EeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeE
Confidence 5677 88999999999999999999999988754 1 23332 233455
Q ss_pred eecCccccc---ccCchh-hhhcccCchhhhhhccCCCCCC
Q psy7437 53 VEPLDLVDD---EEGLSE-RTVSKKSSDYFKQRSIGPRFAT 89 (279)
Q Consensus 53 VEp~e~~Dd---eDGLpE-K~l~~k~~~f~kERE~gPRfa~ 89 (279)
|..+-+-|| .-||.= ...+.+...+.+-+-.+++|.-
T Consensus 195 Vivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~kl 235 (506)
T KOG0117|consen 195 VIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKL 235 (506)
T ss_pred EEEecCccccccccceEEEEeecchhHHHHHhhccCCceee
Confidence 555555444 345431 1234566777888888888653
No 55
>KOG0111|consensus
Probab=58.30 E-value=9.5 Score=36.51 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=44.3
Q ss_pred CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccccccCchhhhhcccCchhhhhhccCCCCCCC
Q psy7437 12 DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVDDEEGLSERTVSKKSSDYFKQRSIGPRFATI 90 (279)
Q Consensus 12 dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~DdeDGLpEK~l~~k~~~f~kERE~gPRfa~~ 90 (279)
+.+++.|.|+|||.----|.+||+-.++.-.| -|.+.|-- -+|+| | ||.++.|=||.-
T Consensus 47 esqkHRgFgFVefe~aEDAaaAiDNMnesEL~----GrtirVN~--------AkP~k-i--------kegsqkPvWADD 104 (298)
T KOG0111|consen 47 ESQKHRGFGFVEFEEAEDAAAAIDNMNESELF----GRTIRVNL--------AKPEK-I--------KEGSQKPVWADD 104 (298)
T ss_pred hcccccceeEEEeeccchhHHHhhcCchhhhc----ceeEEEee--------cCCcc-c--------cCCCCCCcccCc
Confidence 34899999999999999999999999887655 34454432 34566 2 488889999983
No 56
>KOG0533|consensus
Probab=58.29 E-value=12 Score=35.15 Aligned_cols=44 Identities=25% Similarity=0.381 Sum_probs=37.9
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCC
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQS 47 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTts 47 (279)
++.++.|-.|..|+|.|-|-|.|.+.--|..|++.... |.|...
T Consensus 109 ~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~g--v~ldG~ 152 (243)
T KOG0533|consen 109 ELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNG--VALDGR 152 (243)
T ss_pred cceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcC--cccCCc
Confidence 46789999999999999999999999899999998876 666544
No 57
>KOG1365|consensus
Probab=58.18 E-value=6.5 Score=39.98 Aligned_cols=47 Identities=17% Similarity=0.400 Sum_probs=36.6
Q ss_pred EEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 8 VLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 8 ViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
++++..|+|||+.+|+|.+--.|++|..+|....- -.|.|=|-|-..
T Consensus 315 mv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~m----k~RYiEvfp~S~ 361 (508)
T KOG1365|consen 315 MVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLM----KSRYIEVFPCSV 361 (508)
T ss_pred EEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhc----ccceEEEeeccH
Confidence 57788899999999999999999999999986543 345555545443
No 58
>KOG0110|consensus
Probab=53.75 E-value=8.7 Score=41.14 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=21.5
Q ss_pred CCCceeeeccCCHHHHHHHHHcc
Q psy7437 16 SKNEGIIEFTRKPAAAQALKRCQ 38 (279)
Q Consensus 16 stGeGiVEFa~Kp~A~kAL~rc~ 38 (279)
|.|.|+|||+.+..|+.||+..+
T Consensus 559 SmGfgFVEF~~~e~A~~a~k~lq 581 (725)
T KOG0110|consen 559 SMGFGFVEFAKPESAQAALKALQ 581 (725)
T ss_pred ccceeEEEecCHHHHHHHHHHhc
Confidence 78999999999999999999877
No 59
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=53.21 E-value=15 Score=38.53 Aligned_cols=51 Identities=25% Similarity=0.374 Sum_probs=39.7
Q ss_pred ceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 4 ERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 4 ERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
-|-|||||.| -.-|-||=-|..-+.--.||+. +-.|||++=.|-||--.-+
T Consensus 68 krP~vViDPR-AGHGpGIGGFK~dSevG~AL~~-GHPvYFV~F~p~P~pgQTl 118 (581)
T PF11339_consen 68 KRPFVVIDPR-AGHGPGIGGFKPDSEVGVALRA-GHPVYFVGFFPEPEPGQTL 118 (581)
T ss_pred CCCeEEeCCC-CCCCCCccCCCcccHHHHHHHc-CCCeEEEEecCCCCCCCcH
Confidence 4679999999 3346677789998888889985 8999999977777654433
No 60
>KOG4209|consensus
Probab=52.94 E-value=17 Score=33.52 Aligned_cols=51 Identities=24% Similarity=0.221 Sum_probs=36.6
Q ss_pred cceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 3 IERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 3 VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
|.|..|.+|. .|.|.|.++|+|..+.++.+||. ...+-+- .+++.|.++-.
T Consensus 128 i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~----~~~i~vt~~r~ 179 (231)
T KOG4209|consen 128 INRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP----GPAIEVTLKRT 179 (231)
T ss_pred ccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc----cccceeeeeee
Confidence 3444455554 47899999999999999999999 6666655 34555555543
No 61
>PF13827 DUF4189: Domain of unknown function (DUF4189)
Probab=50.36 E-value=24 Score=27.45 Aligned_cols=49 Identities=12% Similarity=0.015 Sum_probs=36.4
Q ss_pred EEeCCCCCCCCceeeeccCCHHHHHHHHHccC----CceeecCCCCceEeecC
Q psy7437 8 VLVDDRGNSKNEGIIEFTRKPAAAQALKRCQD----GVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 8 ViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~e----g~FlLTtsprPviVEp~ 56 (279)
|.+|+..-..|..+-.-+++.+-..||..|.. +|-+++++...|++-..
T Consensus 5 IA~~~~~g~~g~s~~~~s~~~A~~~Al~~C~~~g~~~C~v~~~~~n~C~AvA~ 57 (100)
T PF13827_consen 5 IAYSPSTGAYGYSWNYPSREEAEAAALANCGQAGGSDCKVVVSFSNQCGAVAQ 57 (100)
T ss_pred EEEcCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCCEEEEEeCCeEEEEEE
Confidence 44577744477776555666777889999999 99999988887877554
No 62
>smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase.
Probab=50.08 E-value=9.5 Score=27.45 Aligned_cols=22 Identities=27% Similarity=0.589 Sum_probs=18.1
Q ss_pred eeEEEeCCCCCCCCceeeeccC
Q psy7437 5 RAVVLVDDRGNSKNEGIIEFTR 26 (279)
Q Consensus 5 RAVViVDdRGrstGeGiVEFa~ 26 (279)
.-|.|+|+.|.+.|.|++-.+.
T Consensus 35 ~~V~v~~~~g~~vg~G~~~~~s 56 (77)
T smart00359 35 DVVVIVDEKGEPLGIGLANMSS 56 (77)
T ss_pred CEEEEEcCCCCEEEEEEEeCCH
Confidence 3478899999999999976654
No 63
>KOG0145|consensus
Probab=47.62 E-value=17 Score=35.63 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=34.5
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecC
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQ 46 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTt 46 (279)
+||.+-.|-|.= |.|.|.|+|-+.+..-|-+|+.-.+ |.=|-|.
T Consensus 67 eiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlN-GLrLQ~K 111 (360)
T KOG0145|consen 67 EIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLN-GLRLQNK 111 (360)
T ss_pred ceeeeeeeeccccccccccceeeecChHHHHHHHhhhc-ceeeccc
Confidence 578887777765 9999999999999999999987553 4444443
No 64
>KOG0117|consensus
Probab=46.59 E-value=35 Score=35.34 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=44.3
Q ss_pred CCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccccccC
Q psy7437 11 DDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVDDEEG 64 (279)
Q Consensus 11 DdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~DdeDG 64 (279)
||.+|..|.-+|||.+-.+|-.|=+++..|-|-|- -..+.|+|.|...+.|+
T Consensus 202 ~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klw--gn~~tVdWAep~~e~de 253 (506)
T KOG0117|consen 202 DDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLW--GNAITVDWAEPEEEPDE 253 (506)
T ss_pred cccccccceEEEEeecchhHHHHHhhccCCceeec--CCcceeeccCcccCCCh
Confidence 78899999999999999999999999999999875 45678888887666543
No 65
>KOG0127|consensus
Probab=43.55 E-value=30 Score=36.73 Aligned_cols=42 Identities=21% Similarity=0.148 Sum_probs=35.3
Q ss_pred CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 14 GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 14 GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
|+--|.|+|-|..|..|.+||+..+..-|. .|||-|.|.-+-
T Consensus 155 gklcGFaFV~fk~~~dA~~Al~~~N~~~i~----gR~VAVDWAV~K 196 (678)
T KOG0127|consen 155 GKLCGFAFVQFKEKKDAEKALEFFNGNKID----GRPVAVDWAVDK 196 (678)
T ss_pred CCccceEEEEEeeHHHHHHHHHhccCceec----CceeEEeeeccc
Confidence 777799999999999999999987766554 799999886443
No 66
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=43.13 E-value=28 Score=31.47 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=35.0
Q ss_pred EEeCCCCCCCCceeeeccCCHHHHHHHHHccC-CceeecCCCCceEeecC
Q psy7437 8 VLVDDRGNSKNEGIIEFTRKPAAAQALKRCQD-GVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 8 ViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~e-g~FlLTtsprPviVEp~ 56 (279)
|||=..|-+.|||++=...+..|..||+.+-. +.|= .+..+||||-+
T Consensus 41 ~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg--~~~~~vvIEE~ 88 (194)
T PF01071_consen 41 VVIKADGLAAGKGVVIADDREEALEALREIFVDRKFG--DAGSKVVIEEF 88 (194)
T ss_dssp EEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTC--CCGSSEEEEE-
T ss_pred eEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccC--CCCCcEEEEec
Confidence 45555589999999999999999999998864 3332 45567777754
No 67
>KOG0131|consensus
Probab=42.43 E-value=30 Score=32.11 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=34.6
Q ss_pred CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 12 DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 12 dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+-|+|.|.|+|-|+.--+|.+|+...+.- ++ +.||++|.-.--
T Consensus 134 ~tg~~~~~g~i~~~sfeasd~ai~s~ngq-~l---~nr~itv~ya~k 176 (203)
T KOG0131|consen 134 DTGNPKGFGFINYASFEASDAAIGSMNGQ-YL---CNRPITVSYAFK 176 (203)
T ss_pred cCCCCCCCeEEechhHHHHHHHHHHhccc-hh---cCCceEEEEEEe
Confidence 44999999999999999999999987753 22 577888876644
No 68
>KOG1144|consensus
Probab=41.97 E-value=2.1e+02 Score=32.10 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7437 180 ILREQLRQREADRERQKQEWELKERH 205 (279)
Q Consensus 180 ~~Rq~l~~rqe~~~rqk~e~em~~r~ 205 (279)
.|++.|-++++.+++++++.+-+.|.
T Consensus 218 ~~qe~La~~qe~eE~qkreeEE~~r~ 243 (1064)
T KOG1144|consen 218 AMQEALAKRQEEEERQKREEEERLRR 243 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555444433333
No 69
>PRK09772 transcriptional antiterminator BglG; Provisional
Probab=40.44 E-value=14 Score=33.75 Aligned_cols=38 Identities=21% Similarity=0.386 Sum_probs=26.5
Q ss_pred eEEEeCCCCCC---CCceeeeccCCHHHHHHHHHccCCceeec
Q psy7437 6 AVVLVDDRGNS---KNEGIIEFTRKPAAAQALKRCQDGVFFLT 45 (279)
Q Consensus 6 AVViVDdRGrs---tGeGiVEFa~Kp~A~kAL~rc~eg~FlLT 45 (279)
+|+++|+.|+- +|+|| -|.+||+..--.. --++.|.|.
T Consensus 13 vvl~~~~~~~e~i~~GkGi-gF~kk~g~~i~~~-~iek~f~~~ 53 (278)
T PRK09772 13 VVVVIDDQQREKVVMGRGI-GFQKRAGERINSS-GIEKEYALS 53 (278)
T ss_pred EEEEEcCCCCEEEEEeccc-ccCCCCCCccChH-HhceEEecC
Confidence 45555777864 89999 8999998654433 337788764
No 70
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=39.41 E-value=3.7e+02 Score=26.09 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=11.8
Q ss_pred hhhHHHHHHhhhchhHHHHHHHhhchhh
Q psy7437 230 QQDEELRRRHQENSIFMQVIVWLGDLKQ 257 (279)
Q Consensus 230 ~q~~~~~rr~qe~~~~~q~~~~~~~~~~ 257 (279)
+.+.++++++.--..=---..|+..++-
T Consensus 191 ReN~Di~l~~l~~ka~e~R~t~lesI~t 218 (276)
T PF12037_consen 191 RENEDINLEQLRLKAEEERETVLESINT 218 (276)
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555433332233344444433
No 71
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=39.33 E-value=27 Score=30.18 Aligned_cols=41 Identities=27% Similarity=0.492 Sum_probs=32.0
Q ss_pred eeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEe
Q psy7437 5 RAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIV 53 (279)
Q Consensus 5 RAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviV 53 (279)
-|.||+|+.|.|.|--|. . |.|+. +.++-|-=..|+-|.||
T Consensus 82 NA~Viin~~g~P~GtrI~--G--PVaRE----lr~~~~~kI~SlA~eVv 122 (122)
T COG0093 82 NAAVIINPDGEPRGTRIF--G--PVARE----LRERGFMKIASLAPEVV 122 (122)
T ss_pred ceEEEECCCCCcccceEe--c--chhHH----HHhcCCceeeecceecC
Confidence 589999999999999884 3 88887 45666776777777664
No 72
>KOG4205|consensus
Probab=33.76 E-value=31 Score=33.39 Aligned_cols=56 Identities=27% Similarity=0.379 Sum_probs=35.2
Q ss_pred cceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccccccCc
Q psy7437 3 IERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVDDEEGL 65 (279)
Q Consensus 3 VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~DdeDGL 65 (279)
|--|||.-|-- |||-|.|+|.|+.-++-..+|.. -|-+.-+.+|+|....--+++.
T Consensus 33 v~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-------~~h~~dgr~ve~k~av~r~~~~ 89 (311)
T KOG4205|consen 33 VTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-------RTHKLDGRSVEPKRAVSREDQT 89 (311)
T ss_pred eeeEEEeccCCCCCcccccceecCCCcchheeecc-------cccccCCccccceeccCccccc
Confidence 44466666654 99999999999976654444321 1233556677777765554443
No 73
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=33.73 E-value=32 Score=25.61 Aligned_cols=35 Identities=31% Similarity=0.367 Sum_probs=27.1
Q ss_pred eEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCce
Q psy7437 6 AVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVF 42 (279)
Q Consensus 6 AVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~F 42 (279)
.+|.|.|++...+.+.++++ |+|.++|---+.|..
T Consensus 40 V~v~V~D~Cp~~~~~~lDLS--~~aF~~la~~~~G~i 74 (78)
T PF03330_consen 40 VTVTVVDRCPGCPPNHLDLS--PAAFKALADPDAGVI 74 (78)
T ss_dssp EEEEEEEE-TTSSSSEEEEE--HHHHHHTBSTTCSSE
T ss_pred EEEEEEccCCCCcCCEEEeC--HHHHHHhCCCCceEE
Confidence 46888999999999999998 678888776666654
No 74
>KOG0145|consensus
Probab=32.45 E-value=44 Score=32.83 Aligned_cols=47 Identities=28% Similarity=0.378 Sum_probs=33.6
Q ss_pred EEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 8 VLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 8 ViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
|+||.- |-|.|-|+|-|.++--|-.||+-.+.--=. ...-|++|.-.
T Consensus 159 iL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~--g~tepItVKFa 206 (360)
T KOG0145|consen 159 ILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS--GCTEPITVKFA 206 (360)
T ss_pred hhhhcccceecceeEEEecchhHHHHHHHhccCCCCC--CCCCCeEEEec
Confidence 455654 999999999999999999999976542111 22457777544
No 75
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=32.39 E-value=3.5e+02 Score=23.82 Aligned_cols=39 Identities=26% Similarity=0.476 Sum_probs=25.8
Q ss_pred CCCCCCC-CCch-hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy7437 84 GPRFATI-GSFE-FEYGTRWKQLYELYKQKEEALQKELKLE 122 (279)
Q Consensus 84 gPRfa~~-gsFE-~EygqRWK~L~e~eKqqrE~l~reikee 122 (279)
-|||-+. |+|- .-|...|.-|+++...-...|...|+..
T Consensus 35 DPRFd~~~G~~~~~~f~k~Y~FL~d~r~~E~~~Lk~~lk~~ 75 (168)
T PF06102_consen 35 DPRFDSLSGEFNEDLFRKNYGFLDDYREKEIKELKKQLKKT 75 (168)
T ss_pred CCCcCccccccCHHHHHHhhhhHHHHHHHHHHHHHHHHHHc
Confidence 4888654 3332 2367788888888877777776666654
No 76
>PF11217 DUF3013: Protein of unknown function (DUF3013); InterPro: IPR021380 This bacterial family of proteins with unknown function appear to be restricted to Firmicutes. ; PDB: 3NAT_A.
Probab=31.89 E-value=18 Score=32.40 Aligned_cols=21 Identities=52% Similarity=0.835 Sum_probs=5.8
Q ss_pred eeEEEeCCCCCCCCceeeecc
Q psy7437 5 RAVVLVDDRGNSKNEGIIEFT 25 (279)
Q Consensus 5 RAVViVDdRGrstGeGiVEFa 25 (279)
-+|.|+|+.|-++.++||+|.
T Consensus 46 ~~v~~~D~~G~~s~e~ii~fE 66 (160)
T PF11217_consen 46 EGVEIVDDEGESSDEDIIEFE 66 (160)
T ss_dssp S----S----------EEEEE
T ss_pred cceEEECCCCcccCCCceEee
Confidence 468899999999999999996
No 77
>KOG1365|consensus
Probab=31.65 E-value=56 Score=33.56 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=25.3
Q ss_pred ceeEEEeCCCCCCCCceeeeccCCHHHHHHHHH
Q psy7437 4 ERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKR 36 (279)
Q Consensus 4 ERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~r 36 (279)
|.-+.|.-..||+||..+|=|+.---|.+||.+
T Consensus 193 egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 193 EGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred cceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 444455555899999999999998888887543
No 78
>KOG3634|consensus
Probab=30.11 E-value=5.2e+02 Score=26.12 Aligned_cols=13 Identities=46% Similarity=0.575 Sum_probs=6.7
Q ss_pred HhhhHHHHHHHhH
Q psy7437 209 QRRCDEEAMRRQT 221 (279)
Q Consensus 209 ~rr~~Ee~mrrq~ 221 (279)
+.+.+|+-+|+++
T Consensus 153 r~r~~Eek~Rr~~ 165 (361)
T KOG3634|consen 153 RIRLEEEKSRRQE 165 (361)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555543
No 79
>PF03123 CAT_RBD: CAT RNA binding domain; InterPro: IPR004341 The CAT RNA-binding domain is found at the amino terminus of a family of transcriptional antiterminator proteins, the Co-AntiTerminator (CAT) domain. This domain forms a dimer in the crystal structure []. Transcriptional antiterminators of the BglG/SacY family are regulatory proteins that mediate the induction of sugar metabolizing operons in Gram-positive and Gram-negative bacteria. Upon activation, these proteins bind to specific targets in nascent mRNAs, thereby preventing abortive dissociation of the RNA polymerase from the DNA template [].; GO: 0003723 RNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1AUU_B 1TLV_A 1L1C_A 1H99_A 3RIO_A.
Probab=28.71 E-value=27 Score=26.15 Aligned_cols=39 Identities=31% Similarity=0.474 Sum_probs=20.4
Q ss_pred eEEEeCCCCC---CCCceeeeccCCHHHHHHHHHccCCceeecC
Q psy7437 6 AVVLVDDRGN---SKNEGIIEFTRKPAAAQALKRCQDGVFFLTQ 46 (279)
Q Consensus 6 AVViVDdRGr---stGeGiVEFa~Kp~A~kAL~rc~eg~FlLTt 46 (279)
||++.|+.|. -+|+|| -|.+||+..-.-. --++.|.|..
T Consensus 11 vvl~~~~~~~E~Iv~GkGI-GF~kk~G~~i~~~-~iek~f~l~~ 52 (59)
T PF03123_consen 11 VVLAKDDNGQEVIVMGKGI-GFGKKPGDEIDES-KIEKVFVLED 52 (59)
T ss_dssp EEEEE-CCSSEEEEE-TTS-STT--TTSEEECC-CSSEEEEEES
T ss_pred EEEEEeCCCCEEEEEeecc-eeccCCCCccChH-HeeEEEEeCC
Confidence 5666667775 479998 8999987432111 1245565554
No 80
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=28.32 E-value=80 Score=25.72 Aligned_cols=46 Identities=15% Similarity=0.049 Sum_probs=39.4
Q ss_pred CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 13 RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 13 RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.+...|.++|-|....+|.+-.+......+=.+.|.++|-|-+..-
T Consensus 41 ~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAri 86 (97)
T PF04059_consen 41 NKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYARI 86 (97)
T ss_pred CCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhHh
Confidence 3788999999999999999988888888887888999998877643
No 81
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=27.75 E-value=1.4e+02 Score=21.83 Aligned_cols=41 Identities=32% Similarity=0.387 Sum_probs=25.3
Q ss_pred CCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7437 87 FATIGSFEFEYGTRWKQLYELYKQKEEALQKELKLEEEKLEAQM 130 (279)
Q Consensus 87 fa~~gsFE~EygqRWK~L~e~eKqqrE~l~reikee~EKLEaEM 130 (279)
...++.+--+.+.+|+.|.+.+|..-+..=++ ..++.+.||
T Consensus 29 ~~~~~e~~k~~~~~Wk~Ls~~EK~~Y~~~A~~---~k~~y~~e~ 69 (73)
T PF09011_consen 29 KQSFREVMKEISERWKSLSEEEKEPYEERAKE---DKERYEREM 69 (73)
T ss_dssp -SSHHHHHHHHHHHHHHS-HHHHHHHHHHHHH---HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HHHHHHHHH
Confidence 44445566679999999999998755544333 344444555
No 82
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=27.10 E-value=64 Score=28.44 Aligned_cols=38 Identities=16% Similarity=0.048 Sum_probs=28.0
Q ss_pred EEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeec
Q psy7437 8 VLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLT 45 (279)
Q Consensus 8 ViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLT 45 (279)
++||+.|.-||.+++-...|..+.+++...+..|++++
T Consensus 114 l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~~~~v~vG 151 (203)
T TIGR02137 114 LEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYYRVIAAG 151 (203)
T ss_pred eEEecCCeeECeeecCcchHHHHHHHHHhhCCCEEEEe
Confidence 56666689999988666677778888877665566655
No 83
>KOG0577|consensus
Probab=26.61 E-value=9.3e+02 Score=26.89 Aligned_cols=18 Identities=44% Similarity=0.455 Sum_probs=10.0
Q ss_pred HHHhhhhhHHHHHHHHHH
Q psy7437 130 MEFARYENETEILREREC 147 (279)
Q Consensus 130 ME~a~~ehq~~lLre~l~ 147 (279)
|=.++|+++..+||++|-
T Consensus 647 ~l~~rH~leqql~redln 664 (948)
T KOG0577|consen 647 MLLARHELEQQLLREDLN 664 (948)
T ss_pred HHHHhhhhHHHHHHHHhh
Confidence 444556666666665554
No 84
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=26.16 E-value=27 Score=23.46 Aligned_cols=13 Identities=38% Similarity=0.935 Sum_probs=10.1
Q ss_pred CCCcceeeccccc
Q psy7437 265 TEGPFICECNNKM 277 (279)
Q Consensus 265 ~~~~~~~~~~~~~ 277 (279)
+.|+|.|.|..-.
T Consensus 21 ~~Gsy~C~C~~Gy 33 (42)
T PF07645_consen 21 TEGSYSCSCPPGY 33 (42)
T ss_dssp ETTEEEEEESTTE
T ss_pred CCCCEEeeCCCCc
Confidence 4699999998643
No 85
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=26.02 E-value=42 Score=30.80 Aligned_cols=17 Identities=18% Similarity=0.306 Sum_probs=14.7
Q ss_pred eeEEEeCCCCCCCCcee
Q psy7437 5 RAVVLVDDRGNSKNEGI 21 (279)
Q Consensus 5 RAVViVDdRGrstGeGi 21 (279)
.-||+||+.|.+||-|-
T Consensus 4 e~vill~~~d~~~G~~~ 20 (185)
T COG1443 4 EDVILLNDDDVPTGTAE 20 (185)
T ss_pred eeEEEECCCCCccccch
Confidence 45899999999999874
No 86
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=25.82 E-value=27 Score=23.75 Aligned_cols=17 Identities=18% Similarity=0.554 Sum_probs=12.9
Q ss_pred ccCCCCCccee-eccccc
Q psy7437 261 QLGLTEGPFIC-ECNNKM 277 (279)
Q Consensus 261 ~~~~~~~~~~~-~~~~~~ 277 (279)
..-+..|-|+| .|++.+
T Consensus 18 ~~~~~dG~~yC~~cG~~~ 35 (36)
T PF11781_consen 18 WFYSDDGFYYCDRCGHQS 35 (36)
T ss_pred EeEccCCEEEhhhCceEc
Confidence 34566799999 998864
No 87
>KOG0640|consensus
Probab=25.66 E-value=60 Score=32.73 Aligned_cols=31 Identities=35% Similarity=0.649 Sum_probs=25.6
Q ss_pred eeeccCCHHHHHHHHHccC------------CceeecCCCCceE
Q psy7437 21 IIEFTRKPAAAQALKRCQD------------GVFFLTQSLKPVI 52 (279)
Q Consensus 21 iVEFa~Kp~A~kAL~rc~e------------g~FlLTtsprPvi 52 (279)
+.+|+ ||+|.+|.+-.+| |-|||..+..|++
T Consensus 198 lFDfs-K~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~ 240 (430)
T KOG0640|consen 198 LFDFS-KTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTL 240 (430)
T ss_pred EEecc-cHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCce
Confidence 56787 9999999887764 8899999988875
No 88
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=25.51 E-value=73 Score=29.65 Aligned_cols=45 Identities=31% Similarity=0.495 Sum_probs=35.0
Q ss_pred eeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 5 RAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 5 RAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
..||-|+|||.-.+-.|++.+ ++|.+.|.....|. -||.|+.+..
T Consensus 49 sviVrVnDRGPf~~gRiIDLS--~aAA~~Lg~~~~G~-------a~V~vevl~~ 93 (208)
T TIGR00413 49 SVIVRINDRGPFSDDRIIDLS--HAAAREIGLISRGV-------GQVRIEVLHV 93 (208)
T ss_pred EEEEEEeCCCCCCCCCEEECC--HHHHHHcCCCcCce-------EEEEEEEEec
Confidence 358899999999999999998 56777788776664 4677777754
No 89
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=25.30 E-value=40 Score=27.04 Aligned_cols=13 Identities=46% Similarity=0.703 Sum_probs=7.2
Q ss_pred ceeEEEeCCCCCC
Q psy7437 4 ERAVVLVDDRGNS 16 (279)
Q Consensus 4 ERAVViVDdRGrs 16 (279)
.-|||+||+.|+.
T Consensus 38 DPaVvvvde~g~~ 50 (84)
T PF11760_consen 38 DPAVVVVDEDGRF 50 (84)
T ss_dssp --EEEEE-TT--E
T ss_pred CCCEEEEeCCCCE
Confidence 4589999999874
No 90
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=25.20 E-value=6 Score=34.63 Aligned_cols=53 Identities=34% Similarity=0.368 Sum_probs=32.4
Q ss_pred EEEeCCC--CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccccccCch
Q psy7437 7 VVLVDDR--GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVDDEEGLS 66 (279)
Q Consensus 7 VViVDdR--GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~DdeDGLp 66 (279)
.-+|||| |-.||-++ .-....|--+-=|+|.|.-++--+-..-++ .||++||+
T Consensus 83 ~ALVDeRlsteGTGL~l------Glsn~~LgwIL~gVf~lIWslY~~~~~~l~-ededSGLs 137 (138)
T PF07123_consen 83 LALVDERLSTEGTGLPL------GLSNNLLGWILLGVFGLIWSLYFVYTSTLD-EDEDSGLS 137 (138)
T ss_pred HHHHHHHhcCCCccccc------cccCchhHHHHHHHHHHHHHHHHhhccccC-CCcccCcC
Confidence 3478999 33333322 114556777777888776555555555566 67778984
No 91
>KOG4207|consensus
Probab=24.39 E-value=71 Score=30.47 Aligned_cols=41 Identities=29% Similarity=0.405 Sum_probs=32.3
Q ss_pred EEEeCCC--CCCCCceeeeccCCHHHHHHHHHccCCceeecCCC
Q psy7437 7 VVLVDDR--GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSL 48 (279)
Q Consensus 7 VViVDdR--GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsp 48 (279)
|.|--|+ +-|-|.+||-|--|--|..|+++. ||..|-...+
T Consensus 43 VyIPrdr~Tr~sRgFaFVrf~~k~daedA~dam-DG~~ldgRel 85 (256)
T KOG4207|consen 43 VYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAM-DGAVLDGREL 85 (256)
T ss_pred eecccccccccccceeEEEeeecchHHHHHHhh-cceeecccee
Confidence 4555565 789999999999999999999965 7777654444
No 92
>KOG0146|consensus
Probab=23.26 E-value=81 Score=31.18 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=30.1
Q ss_pred cceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHcc
Q psy7437 3 IERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQ 38 (279)
Q Consensus 3 VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~ 38 (279)
|=.|-|.||-- +.|.-.|+|-|.+-.+|+.||...+
T Consensus 312 ivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMN 348 (371)
T KOG0146|consen 312 IVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN 348 (371)
T ss_pred eeeeeeeehhccccccceeeEecCCchhHHHHHHHhc
Confidence 44577888865 7788899999999999999998765
No 93
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=23.19 E-value=73 Score=23.32 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=20.7
Q ss_pred cCCHHHHHHHHHccCCceeecCCCC
Q psy7437 25 TRKPAAAQALKRCQDGVFFLTQSLK 49 (279)
Q Consensus 25 a~Kp~A~kAL~rc~eg~FlLTtspr 49 (279)
-.+..|..-|..+.+|.|||-.|..
T Consensus 8 i~r~~Ae~lL~~~~~G~FLvR~s~~ 32 (84)
T smart00252 8 ISREEAEKLLKNEGDGDFLVRDSES 32 (84)
T ss_pred CCHHHHHHHHhcCCCcEEEEEcCCC
Confidence 3567888999999999999998743
No 94
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=23.08 E-value=71 Score=24.73 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=26.5
Q ss_pred EEEeCCCCCC------CCceeeeccCCHHHHHHHHHccCCcee
Q psy7437 7 VVLVDDRGNS------KNEGIIEFTRKPAAAQALKRCQDGVFF 43 (279)
Q Consensus 7 VViVDdRGrs------tGeGiVEFa~Kp~A~kAL~rc~eg~Fl 43 (279)
|...||.|.+ +|.|+|.=.-.+.|..|.+.|.-++.-
T Consensus 23 vF~~~d~G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~ 65 (68)
T COG1141 23 VFDYDDEGIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIK 65 (68)
T ss_pred ceeeCCCcceEeccCccccccCChHHHHHHHHHHHhCCccceE
Confidence 5667888877 455544444458899999999888754
No 95
>KOG3654|consensus
Probab=23.00 E-value=4.7e+02 Score=28.16 Aligned_cols=8 Identities=50% Similarity=0.692 Sum_probs=3.9
Q ss_pred HHHHHHHH
Q psy7437 123 EEKLEAQM 130 (279)
Q Consensus 123 ~EKLEaEM 130 (279)
..|-|-||
T Consensus 382 eqkaedem 389 (708)
T KOG3654|consen 382 EQKAEDEM 389 (708)
T ss_pred ccchhHHH
Confidence 44455554
No 96
>KOG4571|consensus
Probab=22.87 E-value=5.7e+02 Score=25.17 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy7437 155 QKELKLEEEKLEAQMEFARYENETEILREQLRQREADR 192 (279)
Q Consensus 155 ~~~~~~~~~kle~qmE~a~~e~e~~~~Rq~l~~rqe~~ 192 (279)
|+.++.+||.|+.+.+.+ +..-..||.+....+-+.
T Consensus 243 RqKkRae~E~l~ge~~~L--e~rN~~LK~qa~~lerEI 278 (294)
T KOG4571|consen 243 RQKKRAEKEALLGELEGL--EKRNEELKDQASELEREI 278 (294)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 456778888888888877 333344444444444333
No 97
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.64 E-value=1e+03 Score=25.85 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=12.2
Q ss_pred ceeEEEeCCCCCCCC
Q psy7437 4 ERAVVLVDDRGNSKN 18 (279)
Q Consensus 4 ERAVViVDdRGrstG 18 (279)
.+.+|++|+-|+.|-
T Consensus 407 ~~sLvLlDE~~~GtD 421 (782)
T PRK00409 407 KNSLVLFDELGAGTD 421 (782)
T ss_pred cCcEEEecCCCCCCC
Confidence 457999999988775
No 98
>KOG4307|consensus
Probab=22.42 E-value=50 Score=36.15 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=29.1
Q ss_pred CCC-CCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 14 GNS-KNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 14 Grs-tGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
|.+ ||-|+|+|.+...+++|+.+-.-- ---|||-|-|.-.
T Consensus 348 ~~~~tG~~~v~f~~~~~~q~A~~rn~~~-----~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 348 APPQTGRKTVMFTPQAPFQNAFTRNPSD-----DVNRPFQTGPPGN 388 (944)
T ss_pred CCCcCCceEEEecCcchHHHHHhcCchh-----hhhcceeecCCCc
Confidence 666 999999999999999998763310 1256776666644
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=21.63 E-value=1.4e+02 Score=24.22 Aligned_cols=51 Identities=29% Similarity=0.295 Sum_probs=27.6
Q ss_pred EEEeCCCCCCCCceeeeccCCHHHHHHHHHccCC-ceeecCCCCceEeecCcc
Q psy7437 7 VVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDG-VFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 7 VViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg-~FlLTtsprPviVEp~e~ 58 (279)
|--||=. +..-.|+|-|....+|.+|+..+.+. .=-|+-.-.+|.+++++-
T Consensus 28 V~yVD~~-~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLeG 79 (105)
T PF08777_consen 28 VAYVDFS-RGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLEG 79 (105)
T ss_dssp EEEEE---TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---H
T ss_pred cceEEec-CCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECCC
Confidence 3345543 34458999999998999999988775 001334456788888864
No 100
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=21.37 E-value=61 Score=19.99 Aligned_cols=14 Identities=36% Similarity=0.733 Sum_probs=10.5
Q ss_pred CCCCcceeeccccc
Q psy7437 264 LTEGPFICECNNKM 277 (279)
Q Consensus 264 ~~~~~~~~~~~~~~ 277 (279)
.+.|+|.|.|...+
T Consensus 19 ~~~g~~~C~C~~g~ 32 (39)
T smart00179 19 NTVGSYRCECPPGY 32 (39)
T ss_pred CCCCCeEeECCCCC
Confidence 34688999998654
No 101
>KOG0163|consensus
Probab=21.35 E-value=1.3e+03 Score=26.53 Aligned_cols=50 Identities=34% Similarity=0.547 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHhhhhHH-HHHHh
Q psy7437 190 ADRERQKQEWELKERHAEEQRRCDEEAMRRQTEEIHLRMQQQDEE-LRRRH 239 (279)
Q Consensus 190 e~~~rqk~e~em~~r~~ee~rr~~Ee~mrrq~ee~~~r~~~q~~~-~~rr~ 239 (279)
++..+-+.+.+.++.++|+++...++.-++-.-+++..+..+-++ ..|+.
T Consensus 951 ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee~k~q~ 1001 (1259)
T KOG0163|consen 951 EEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEEEAKRQN 1001 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567777788877777777555544455555666555544433 44444
No 102
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=21.15 E-value=47 Score=24.79 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=19.4
Q ss_pred eeEEEeCCCCCCCCceeeeccCC
Q psy7437 5 RAVVLVDDRGNSKNEGIIEFTRK 27 (279)
Q Consensus 5 RAVViVDdRGrstGeGiVEFa~K 27 (279)
-.|.|+|..|+..|.|++-|+..
T Consensus 35 d~V~i~~~~g~~ia~G~a~~ss~ 57 (74)
T PF01472_consen 35 DEVAIVDEDGEVIAVGRANMSSE 57 (74)
T ss_dssp SEEEEEETTSSEEEEEEESSTHH
T ss_pred CEEEEEcCCCeEEEEEEEecCHH
Confidence 35889999999999999988743
No 103
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=21.10 E-value=1.3e+02 Score=28.10 Aligned_cols=44 Identities=23% Similarity=0.174 Sum_probs=32.1
Q ss_pred CcceeEEEeCCCC----------CCCCceeeeccCCHHHHHHHHHccCCceeec
Q psy7437 2 NIERAVVLVDDRG----------NSKNEGIIEFTRKPAAAQALKRCQDGVFFLT 45 (279)
Q Consensus 2 ~VERAVViVDdRG----------rstGeGiVEFa~Kp~A~kAL~rc~eg~FlLT 45 (279)
+-+.-|+||||.- .|.|+-++-|++-..=.++..--..||++|-
T Consensus 2 ~~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllD 55 (202)
T COG4566 2 PREPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLD 55 (202)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccCCCCCeEEEe
Confidence 4456799999983 3678888889876665555445577999876
No 104
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=20.64 E-value=21 Score=30.54 Aligned_cols=38 Identities=26% Similarity=0.526 Sum_probs=28.7
Q ss_pred eEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCC
Q psy7437 6 AVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSL 48 (279)
Q Consensus 6 AVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsp 48 (279)
.+|.+|+.| -|+.|.-||....+-..++-|+|+++.+.
T Consensus 149 g~v~~d~~~-----~V~~~~EKP~~~~~~~~~~~G~Y~~~~~~ 186 (248)
T PF00483_consen 149 GVVEVDEDG-----RVIRIVEKPDNPNASNLINTGIYIFKPEI 186 (248)
T ss_dssp EEEEEETTS-----EEEEEEESCSSHSHSSEEEEEEEEEETHH
T ss_pred eeeeeccce-----eEEEEeccCcccccceeccCceEEEcchH
Confidence 577777444 57778889997777667888999988763
No 105
>KOG0146|consensus
Probab=20.33 E-value=1.8e+02 Score=28.93 Aligned_cols=47 Identities=28% Similarity=0.335 Sum_probs=38.5
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCC
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSL 48 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsp 48 (279)
.|+.+.|.--..|.|.|-.+|-|..-.-|..||......--+-.+|.
T Consensus 45 ~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASS 91 (371)
T KOG0146|consen 45 NIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASS 91 (371)
T ss_pred CcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCcc
Confidence 47788999999999999999999999999999997765544444443
Done!