Query psy7437
Match_columns 279
No_of_seqs 90 out of 110
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 18:17:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sde_A Paraspeckle component 1 100.0 1.4E-32 4.7E-37 236.8 11.0 140 2-142 122-261 (261)
2 2dnl_A Cytoplasmic polyadenyla 97.5 8E-05 2.7E-09 56.8 4.6 59 2-61 34-103 (114)
3 1wel_A RNA-binding protein 12; 97.3 0.00011 3.9E-09 56.5 3.4 52 2-58 51-103 (124)
4 2j8a_A Histone-lysine N-methyl 97.3 0.00031 1.1E-08 59.1 6.0 62 2-71 32-103 (136)
5 2dha_A FLJ20171 protein; RRM d 97.3 0.00011 3.9E-09 58.5 3.0 50 3-57 54-103 (123)
6 2dgw_A Probable RNA-binding pr 97.3 0.00031 1.1E-08 50.7 5.0 53 2-59 35-87 (91)
7 2dnn_A RNA-binding protein 12; 97.3 0.00027 9.4E-09 55.0 4.7 51 2-57 41-91 (109)
8 3p5t_L Cleavage and polyadenyl 97.2 0.00026 9E-09 51.5 3.8 53 2-58 29-82 (90)
9 2cpy_A RNA-binding protein 12; 97.2 0.00033 1.1E-08 53.3 4.3 50 4-58 44-93 (114)
10 2lkz_A RNA-binding protein 5; 97.2 0.00033 1.1E-08 53.2 4.3 52 5-56 40-92 (95)
11 3md1_A Nuclear and cytoplasmic 97.2 0.00043 1.5E-08 48.8 4.5 53 2-58 27-80 (83)
12 2dnh_A Bruno-like 5, RNA bindi 97.2 0.00045 1.5E-08 51.0 4.8 56 2-58 41-96 (105)
13 2pe8_A Splicing factor 45; RRM 97.1 0.00049 1.7E-08 53.1 4.9 52 2-57 39-92 (105)
14 1wg5_A Heterogeneous nuclear r 97.1 0.00034 1.2E-08 52.4 3.8 51 3-58 42-93 (104)
15 2fy1_A RNA-binding motif prote 97.1 0.00098 3.4E-08 51.2 6.5 53 2-58 33-85 (116)
16 1wez_A HnRNP H', FTP-3, hetero 97.1 0.00051 1.8E-08 52.0 4.8 51 5-60 43-93 (102)
17 2lmi_A GRSF-1, G-rich sequence 97.1 0.00026 8.7E-09 53.4 3.1 51 3-58 41-91 (107)
18 2hgm_A HNRPF protein, heteroge 97.1 0.00027 9.3E-09 56.8 3.2 48 5-57 72-119 (126)
19 1x5t_A Splicing factor 3B subu 97.0 0.00088 3E-08 48.5 5.3 55 2-60 31-87 (96)
20 1x5o_A RNA binding motif, sing 97.0 0.00065 2.2E-08 50.9 4.7 56 2-57 51-110 (114)
21 2hgl_A HNRPF protein, heteroge 97.0 0.00035 1.2E-08 56.5 3.4 51 3-58 74-124 (136)
22 2ywk_A Putative RNA-binding pr 97.0 0.00059 2E-08 49.3 4.1 51 2-56 42-92 (95)
23 2d9p_A Polyadenylate-binding p 97.0 0.00089 3E-08 49.4 5.0 53 2-59 41-93 (103)
24 2lxi_A RNA-binding protein 10; 97.0 0.00049 1.7E-08 50.8 3.6 53 2-57 28-81 (91)
25 1jmt_A Splicing factor U2AF 35 97.0 0.00039 1.3E-08 53.3 3.1 50 2-55 53-102 (104)
26 2nlw_A Eukaryotic translation 97.0 0.00073 2.5E-08 50.7 4.4 51 3-58 48-99 (105)
27 3ns6_A Eukaryotic translation 96.9 0.00054 1.8E-08 51.1 3.5 53 2-57 38-91 (100)
28 1uaw_A Mouse-musashi-1; RNP-ty 96.9 0.0012 4.1E-08 45.8 5.0 49 2-55 26-75 (77)
29 3ucg_A Polyadenylate-binding p 96.9 0.0011 3.7E-08 47.2 4.7 51 2-57 32-83 (89)
30 2dgp_A Bruno-like 4, RNA bindi 96.9 0.0012 4.2E-08 48.7 5.1 57 2-59 39-96 (106)
31 3smz_A Protein raver-1, ribonu 96.9 0.00084 2.9E-08 57.1 4.8 55 2-60 211-265 (284)
32 3s8s_A Histone-lysine N-methyl 96.9 0.00077 2.6E-08 51.9 4.0 52 2-57 32-84 (110)
33 2db1_A Heterogeneous nuclear r 96.9 0.00075 2.6E-08 52.0 3.7 50 3-57 47-96 (118)
34 3ulh_A THO complex subunit 4; 96.9 0.00086 2.9E-08 49.6 3.9 51 2-56 55-105 (107)
35 2cph_A RNA binding motif prote 96.9 0.0012 4E-08 48.7 4.6 57 2-61 41-99 (107)
36 1whw_A Hypothetical protein ri 96.8 0.0013 4.4E-08 48.0 4.7 54 2-59 34-88 (99)
37 2div_A TRNA selenocysteine ass 96.8 0.0013 4.5E-08 47.9 4.7 56 2-57 35-92 (99)
38 2dnz_A Probable RNA-binding pr 96.8 0.0024 8.2E-08 46.1 5.9 56 2-61 31-87 (95)
39 2do4_A Squamous cell carcinoma 96.8 0.0012 3.9E-08 48.5 4.2 53 2-58 43-95 (100)
40 3mdf_A Peptidyl-prolyl CIS-tra 96.8 0.00076 2.6E-08 47.6 3.1 50 2-55 33-83 (85)
41 4fxv_A ELAV-like protein 1; RN 96.8 0.001 3.5E-08 50.1 3.9 51 2-56 45-96 (99)
42 1p1t_A Cleavage stimulation fa 96.8 0.0012 3.9E-08 48.5 4.0 53 2-58 34-87 (104)
43 1x5s_A Cold-inducible RNA-bind 96.8 0.0019 6.4E-08 47.4 5.1 55 2-60 38-93 (102)
44 3bs9_A Nucleolysin TIA-1 isofo 96.8 0.0012 4.3E-08 46.7 4.0 51 2-56 32-83 (87)
45 1s79_A Lupus LA protein; RRM, 96.8 0.0013 4.4E-08 50.2 4.2 51 2-57 37-87 (103)
46 2la6_A RNA-binding protein FUS 96.8 0.0015 5E-08 48.0 4.4 46 6-55 51-97 (99)
47 2dh8_A DAZ-associated protein 96.7 0.0019 6.5E-08 47.7 5.0 53 2-59 42-95 (105)
48 2dhg_A TRNA selenocysteine ass 96.7 0.0013 4.6E-08 48.3 4.1 54 2-58 36-89 (104)
49 2cpe_A RNA-binding protein EWS 96.7 0.0021 7.2E-08 48.1 4.9 51 5-59 52-103 (113)
50 1x4b_A Heterogeneous nuclear r 96.7 0.003 1E-07 47.5 5.8 53 2-59 53-106 (116)
51 2cqb_A Peptidyl-prolyl CIS-tra 96.7 0.0017 5.9E-08 47.6 4.3 53 2-58 38-91 (102)
52 3md3_A Nuclear and cytoplasmic 96.7 0.0018 6.1E-08 49.5 4.6 54 2-59 26-79 (166)
53 2ek1_A RNA-binding protein 12; 96.7 0.001 3.6E-08 48.0 3.1 51 2-56 41-92 (95)
54 2kn4_A Immunoglobulin G-bindin 96.7 0.0013 4.4E-08 51.9 3.8 53 2-58 96-149 (158)
55 2kt5_A RNA and export factor-b 96.7 0.0021 7.1E-08 49.1 4.9 52 2-57 61-112 (124)
56 1x4h_A RNA-binding protein 28; 96.7 0.0026 9E-08 47.1 5.3 57 2-61 41-103 (111)
57 2ki2_A SS-DNA binding protein 96.6 0.0018 6.2E-08 46.4 4.1 51 2-57 27-78 (90)
58 2dgs_A DAZ-associated protein 96.6 0.003 1E-07 46.2 5.3 54 2-60 36-90 (99)
59 1oo0_B CG8781-PA, drosophila Y 96.6 0.0016 5.6E-08 48.4 4.0 52 2-57 52-104 (110)
60 2e5h_A Zinc finger CCHC-type a 96.6 0.0019 6.6E-08 46.5 4.1 50 2-55 42-92 (94)
61 1fj7_A Nucleolin RBD1, protein 96.6 0.00059 2E-08 50.2 1.4 51 7-62 47-98 (101)
62 2jrs_A RNA-binding protein 39; 96.6 0.0017 5.9E-08 49.2 4.0 53 2-58 52-105 (108)
63 2do0_A HnRNP M, heterogeneous 96.6 0.0026 8.9E-08 47.5 4.9 52 2-57 41-92 (114)
64 3v4m_A Splicing factor U2AF 65 96.6 0.0014 4.9E-08 50.3 3.6 52 2-57 41-95 (105)
65 2a3j_A U1 small nuclear ribonu 96.6 0.0016 5.4E-08 52.0 3.9 55 9-67 64-118 (127)
66 1x5u_A Splicing factor 3B subu 96.6 0.0028 9.6E-08 46.6 5.0 53 2-58 41-94 (105)
67 2j76_E EIF-4B, EIF4B, eukaryot 96.6 0.0019 6.5E-08 47.9 4.1 52 3-59 45-98 (100)
68 3n9u_C Cleavage and polyadenyl 96.6 0.0017 5.9E-08 53.0 4.2 52 2-57 83-135 (156)
69 2cqc_A Arginine/serine-rich sp 96.6 0.0018 6.3E-08 46.6 3.8 51 2-56 41-92 (95)
70 2dnm_A SRP46 splicing factor; 96.6 0.002 7E-08 47.4 4.1 53 2-58 39-92 (103)
71 2cpz_A CUG triplet repeat RNA- 96.6 0.0027 9.4E-08 47.7 4.9 54 2-59 51-105 (115)
72 1p27_B RNA-binding protein 8A; 96.5 0.0021 7.1E-08 47.4 4.1 52 2-57 49-101 (106)
73 2krb_A Eukaryotic translation 96.5 0.0012 4E-08 47.0 2.5 39 3-42 34-72 (81)
74 2cqp_A RNA-binding protein 12; 96.5 0.0014 4.7E-08 47.8 3.0 51 2-56 41-92 (98)
75 2x1f_A MRNA 3'-END-processing 96.5 0.0028 9.6E-08 46.2 4.5 53 2-58 28-81 (96)
76 3ue2_A Poly(U)-binding-splicin 96.5 0.001 3.4E-08 52.8 2.2 53 2-58 51-108 (118)
77 2cq4_A RNA binding motif prote 96.5 0.0027 9.1E-08 47.7 4.4 50 2-56 51-101 (114)
78 2cq0_A Eukaryotic translation 96.5 0.0031 1.1E-07 46.4 4.7 53 2-58 41-94 (103)
79 3ex7_B RNA-binding protein 8A; 96.5 0.0034 1.2E-07 47.8 5.0 53 2-58 48-101 (126)
80 1u6f_A Tcubp1, RNA-binding pro 96.5 0.0024 8.2E-08 49.4 4.2 55 2-60 68-123 (139)
81 4f25_A Polyadenylate-binding p 96.5 0.0022 7.4E-08 48.9 3.8 53 2-59 31-83 (115)
82 1wi8_A EIF-4B, eukaryotic tran 96.5 0.0036 1.2E-07 46.3 4.8 54 3-61 41-96 (104)
83 2mss_A Protein (musashi1); RNA 96.4 0.0023 7.9E-08 44.4 3.6 49 2-55 25-74 (75)
84 2qfj_A FBP-interacting repress 96.4 0.0025 8.7E-08 51.2 4.3 52 2-57 151-203 (216)
85 2jwn_A Embryonic polyadenylate 96.4 0.0023 7.9E-08 48.6 3.8 51 2-57 62-113 (124)
86 2m2b_A RNA-binding protein 10; 96.4 0.0018 6.2E-08 50.3 3.2 52 6-58 55-107 (131)
87 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.3 0.0025 8.6E-08 48.8 3.5 50 2-55 89-139 (140)
88 2dgo_A Cytotoxic granule-assoc 96.3 0.003 1E-07 47.4 3.8 53 2-58 41-94 (115)
89 2cq3_A RNA-binding protein 9; 96.3 0.0069 2.3E-07 44.5 5.7 53 2-59 41-93 (103)
90 1x4e_A RNA binding motif, sing 96.3 0.0029 1E-07 44.9 3.5 38 2-39 31-69 (85)
91 3lqv_A PRE-mRNA branch site pr 96.3 0.0042 1.5E-07 46.5 4.5 51 2-58 34-84 (115)
92 2hgn_A Heterogeneous nuclear r 96.3 0.002 6.8E-08 52.4 2.8 50 4-58 73-122 (139)
93 1fjc_A Nucleolin RBD2, protein 96.3 0.0018 6E-08 47.0 2.2 48 7-58 43-90 (96)
94 2fc8_A NCL protein; structure 96.3 0.0053 1.8E-07 44.9 4.8 52 5-60 41-93 (102)
95 3nmr_A Cugbp ELAV-like family 96.2 0.0013 4.5E-08 50.9 1.5 59 2-61 29-90 (175)
96 2fc9_A NCL protein; structure 96.2 0.0044 1.5E-07 45.4 4.2 48 7-58 43-90 (101)
97 2khc_A Testis-specific RNP-typ 96.2 0.0036 1.2E-07 47.1 3.7 49 3-55 67-116 (118)
98 2cpf_A RNA binding motif prote 96.2 0.0039 1.3E-07 45.3 3.7 54 2-59 31-88 (98)
99 1rk8_A CG8781-PA, CG8781-PA pr 96.2 0.0037 1.3E-07 50.3 3.9 53 2-58 98-151 (165)
100 2f3j_A RNA and export factor b 96.2 0.006 2E-07 50.6 5.2 52 2-57 114-165 (177)
101 2dis_A Unnamed protein product 96.2 0.0048 1.6E-07 45.7 4.2 55 3-59 36-92 (109)
102 2cpx_A Hypothetical protein FL 96.1 0.0049 1.7E-07 46.1 4.0 43 13-59 63-105 (115)
103 2kxn_B Transformer-2 protein h 96.1 0.0061 2.1E-07 47.9 4.7 52 2-57 72-124 (129)
104 2err_A Ataxin-2-binding protei 96.1 0.0066 2.3E-07 45.8 4.8 51 2-57 55-105 (109)
105 2rs2_A Musashi-1, RNA-binding 96.1 0.0065 2.2E-07 46.0 4.7 52 2-58 51-103 (109)
106 2dgv_A HnRNP M, heterogeneous 96.1 0.006 2.1E-07 43.7 4.3 52 2-58 34-85 (92)
107 3q2s_C Cleavage and polyadenyl 96.1 0.0038 1.3E-07 53.8 3.8 52 2-57 96-148 (229)
108 2cqd_A RNA-binding region cont 96.1 0.0037 1.3E-07 47.1 3.3 51 2-57 43-94 (116)
109 2cqi_A Nucleolysin TIAR; RNA r 96.1 0.0085 2.9E-07 44.0 5.1 51 3-58 42-92 (103)
110 2cqg_A TDP-43, TAR DNA-binding 96.1 0.0092 3.1E-07 43.8 5.3 54 2-61 41-95 (103)
111 1l3k_A Heterogeneous nuclear r 96.0 0.0052 1.8E-07 48.7 4.0 54 2-60 130-184 (196)
112 2dit_A HIV TAT specific factor 96.0 0.011 3.7E-07 44.9 5.6 51 2-59 52-102 (112)
113 1h2v_Z 20 kDa nuclear CAP bind 96.0 0.0078 2.7E-07 47.6 4.7 53 2-58 65-118 (156)
114 1iqt_A AUF1, heterogeneous nuc 95.9 0.0048 1.6E-07 42.6 3.0 48 2-54 25-73 (75)
115 3s7r_A Heterogeneous nuclear r 95.8 0.0063 2.2E-07 43.3 3.3 48 2-54 37-85 (87)
116 3pgw_S U1-70K; protein-RNA com 95.8 0.011 3.7E-07 56.0 5.6 54 2-59 128-182 (437)
117 4f02_A Polyadenylate-binding p 95.7 0.0062 2.1E-07 50.5 3.4 52 2-58 129-180 (213)
118 2xs2_A Deleted in azoospermia- 95.7 0.0041 1.4E-07 45.7 2.1 49 2-56 35-83 (102)
119 2dng_A Eukaryotic translation 95.7 0.011 3.7E-07 43.6 4.3 51 3-58 41-92 (103)
120 1fxl_A Paraneoplastic encephal 95.7 0.012 4.1E-07 44.9 4.7 52 2-57 28-80 (167)
121 2cpi_A CCR4-NOT transcription 95.7 0.011 3.6E-07 44.7 4.3 53 2-58 44-100 (111)
122 3dxb_A Thioredoxin N-terminall 95.7 0.0053 1.8E-07 51.1 2.9 53 2-58 155-212 (222)
123 4a8x_A RNA-binding protein wit 95.6 0.0042 1.4E-07 43.9 1.8 51 2-56 30-82 (88)
124 1b7f_A Protein (SXL-lethal pro 95.6 0.009 3.1E-07 46.0 3.7 53 2-58 29-82 (168)
125 3egn_A RNA-binding protein 40; 95.6 0.0021 7.1E-08 50.3 0.1 43 12-58 87-129 (143)
126 2lea_A Serine/arginine-rich sp 95.6 0.0095 3.2E-07 47.0 3.8 52 2-57 73-125 (135)
127 2d9o_A DNAJ (HSP40) homolog, s 95.5 0.024 8E-07 43.7 5.6 46 3-58 44-89 (100)
128 2lcw_A RNA-binding protein FUS 94.4 0.0025 8.7E-08 48.1 0.0 49 6-58 45-94 (116)
129 1l3k_A Heterogeneous nuclear r 95.4 0.013 4.5E-07 46.3 4.0 51 2-57 39-90 (196)
130 3smz_A Protein raver-1, ribonu 95.4 0.013 4.6E-07 49.7 4.2 53 2-58 121-174 (284)
131 2dgx_A KIAA0430 protein; RRM d 95.3 0.013 4.6E-07 42.9 3.7 50 2-57 39-88 (96)
132 1fje_B Nucleolin RBD12, protei 95.3 0.0079 2.7E-07 47.1 2.4 49 7-60 43-92 (175)
133 2voo_A Lupus LA protein; RNA-b 95.2 0.013 4.3E-07 49.2 3.5 52 2-58 135-186 (193)
134 2i2y_A Fusion protein consists 94.9 0.023 7.7E-07 44.7 4.0 47 2-56 99-145 (150)
135 2cjk_A Nuclear polyadenylated 94.9 0.018 6.3E-07 44.3 3.4 35 2-36 29-64 (167)
136 2ghp_A U4/U6 snRNA-associated 94.8 0.021 7.1E-07 48.7 3.8 53 2-58 144-196 (292)
137 1x5p_A Negative elongation fac 94.7 0.04 1.4E-06 40.2 4.7 41 14-58 46-86 (97)
138 3s6e_A RNA-binding protein 39; 94.7 0.018 6.2E-07 45.3 3.0 60 2-68 43-102 (114)
139 1x4c_A Splicing factor, argini 94.7 0.031 1.1E-06 41.8 4.1 51 2-58 41-92 (108)
140 2hvz_A Splicing factor, argini 94.6 0.047 1.6E-06 39.8 4.9 50 2-59 26-75 (101)
141 2e44_A Insulin-like growth fac 94.6 0.049 1.7E-06 39.3 4.9 50 3-59 42-92 (96)
142 1nu4_A U1A RNA binding domain; 94.5 0.013 4.4E-07 42.3 1.6 42 13-58 47-88 (97)
143 1x4a_A Splicing factor, argini 94.4 0.045 1.5E-06 40.6 4.4 42 13-58 57-98 (109)
144 2jvr_A Nucleolar protein 3; RN 94.2 0.036 1.2E-06 43.2 3.7 39 14-56 64-102 (111)
145 4f02_A Polyadenylate-binding p 94.1 0.032 1.1E-06 46.1 3.4 40 2-41 41-81 (213)
146 2e5j_A Methenyltetrahydrofolat 94.1 0.057 1.9E-06 39.3 4.3 40 14-57 53-92 (97)
147 2qfj_A FBP-interacting repress 94.0 0.036 1.2E-06 44.4 3.4 51 2-56 54-105 (216)
148 3r27_A HnRNP L, heterogeneous 94.0 0.052 1.8E-06 42.3 4.2 40 15-56 55-94 (100)
149 3sde_A Paraspeckle component 1 93.8 0.06 2E-06 46.0 4.5 35 147-181 227-261 (261)
150 2bz2_A Negative elongation fac 93.2 0.13 4.6E-06 39.9 5.4 40 15-58 71-110 (121)
151 2cq2_A Hypothetical protein LO 93.0 0.072 2.5E-06 42.4 3.5 41 17-57 63-104 (114)
152 2ghp_A U4/U6 snRNA-associated 92.9 0.093 3.2E-06 44.6 4.3 49 2-56 67-115 (292)
153 1wg1_A KIAA1579 protein, homol 92.7 0.096 3.3E-06 37.6 3.6 38 15-56 38-75 (88)
154 1sjq_A Polypyrimidine tract-bi 92.5 0.09 3.1E-06 41.2 3.5 47 3-57 43-90 (105)
155 2kvi_A Nuclear polyadenylated 92.5 0.11 3.8E-06 37.8 3.8 39 16-58 44-82 (96)
156 1x4g_A Nucleolysin TIAR; struc 92.5 0.16 5.3E-06 37.7 4.6 47 3-58 52-98 (109)
157 2ytc_A PRE-mRNA-splicing facto 92.5 0.088 3E-06 37.0 3.1 37 16-55 47-83 (85)
158 3beg_B Splicing factor, argini 92.2 0.079 2.7E-06 40.3 2.7 35 2-42 42-76 (115)
159 2jvo_A Nucleolar protein 3; nu 92.1 0.16 5.6E-06 38.3 4.4 37 17-57 65-101 (108)
160 2yh0_A Splicing factor U2AF 65 91.9 0.13 4.5E-06 40.6 3.7 42 14-60 48-89 (198)
161 2la4_A Nuclear and cytoplasmic 91.8 0.14 4.8E-06 37.3 3.6 38 15-56 61-98 (101)
162 1qm9_A Polypyrimidine tract-bi 91.8 0.3 1E-05 39.0 5.8 48 3-58 31-78 (198)
163 3pgw_A U1-A; protein-RNA compl 91.7 0.19 6.4E-06 42.5 4.8 42 13-58 48-89 (282)
164 1x4f_A Matrin 3; structural ge 91.5 0.2 6.7E-06 39.6 4.4 46 3-56 53-99 (112)
165 1whx_A Hypothetical protein ri 91.2 0.19 6.4E-06 38.1 3.8 39 15-57 44-82 (111)
166 2cpj_A Non-POU domain-containi 91.1 0.32 1.1E-05 35.3 4.9 40 15-58 49-88 (99)
167 2ad9_A Polypyrimidine tract-bi 91.0 0.16 5.5E-06 40.4 3.4 48 2-57 57-105 (119)
168 2dnq_A RNA-binding protein 4B; 91.0 0.41 1.4E-05 34.1 5.2 40 17-60 42-81 (90)
169 2cq1_A PTB-like protein L; RRM 90.8 0.18 6E-06 38.5 3.3 38 17-57 51-89 (101)
170 3u1l_A PRE-mRNA-splicing facto 90.3 0.2 6.8E-06 44.6 3.7 52 2-58 169-228 (240)
171 2xnq_A Nuclear polyadenylated 90.2 0.26 8.8E-06 36.3 3.7 37 16-56 56-92 (97)
172 2dnp_A RNA-binding protein 14; 90.0 0.46 1.6E-05 33.9 4.8 38 17-58 43-80 (90)
173 1wf1_A RNA-binding protein RAL 89.9 0.27 9.1E-06 36.5 3.6 38 16-57 61-98 (110)
174 1sjr_A Polypyrimidine tract-bi 89.5 0.53 1.8E-05 39.8 5.5 52 2-58 72-123 (164)
175 1why_A Hypothetical protein ri 89.5 0.39 1.3E-05 34.7 4.2 40 17-58 53-92 (97)
176 2wbr_A GW182, gawky, LD47780P; 89.5 0.28 9.4E-06 38.2 3.5 38 15-56 41-78 (89)
177 1wex_A Hypothetical protein (r 89.5 0.26 9E-06 37.6 3.3 40 17-58 51-90 (104)
178 1x4d_A Matrin 3; structural ge 89.5 0.26 8.7E-06 38.0 3.3 46 3-56 43-89 (102)
179 2g4b_A Splicing factor U2AF 65 89.3 0.3 1E-05 37.6 3.6 39 14-57 48-86 (172)
180 2adc_A Polypyrimidine tract-bi 89.1 0.4 1.4E-05 39.9 4.5 48 3-58 62-109 (229)
181 2hzc_A Splicing factor U2AF 65 89.0 0.32 1.1E-05 34.0 3.3 35 15-54 51-85 (87)
182 2dgu_A Heterogeneous nuclear r 89.0 0.46 1.6E-05 34.8 4.2 39 17-59 45-83 (103)
183 2diu_A KIAA0430 protein; struc 88.9 0.34 1.2E-05 38.4 3.7 35 18-56 47-81 (96)
184 3tyt_A Heterogeneous nuclear r 88.6 0.3 1E-05 40.9 3.4 48 2-57 31-78 (205)
185 2cqh_A IGF-II mRNA-binding pro 88.5 0.41 1.4E-05 34.2 3.6 41 15-58 42-82 (93)
186 2e5i_A Heterogeneous nuclear r 88.4 0.62 2.1E-05 37.2 4.9 49 2-57 51-100 (124)
187 1wf0_A TDP-43, TAR DNA-binding 87.8 0.38 1.3E-05 34.2 3.0 48 3-60 32-79 (88)
188 3d2w_A TAR DNA-binding protein 87.7 0.29 9.9E-06 35.7 2.4 46 2-57 37-82 (89)
189 2cpd_A Apobec-1 stimulating pr 87.4 0.55 1.9E-05 34.0 3.8 41 15-59 49-89 (99)
190 1owx_A Lupus LA protein, SS-B, 86.8 0.73 2.5E-05 37.3 4.5 43 12-58 52-95 (121)
191 2kn4_A Immunoglobulin G-bindin 86.5 0.3 1E-05 38.2 2.0 30 8-38 5-34 (158)
192 3zzy_A Polypyrimidine tract-bi 84.4 0.91 3.1E-05 36.9 4.0 50 2-57 54-104 (130)
193 2e5g_A U6 snRNA-specific termi 83.6 1.2 4.3E-05 31.9 4.1 42 9-58 39-81 (94)
194 2dgt_A RNA-binding protein 30; 82.6 1.7 6E-05 30.9 4.5 38 17-58 44-81 (92)
195 3tht_A Alkylated DNA repair pr 70.9 2.9 0.0001 38.9 3.6 27 16-42 55-81 (345)
196 4avr_A PA4485; unknown functio 58.4 9.1 0.00031 30.2 3.7 43 5-56 52-94 (95)
197 1xr0_B FGFR signalling adaptor 43.1 29 0.00099 28.8 4.6 79 7-109 16-95 (129)
198 1l1c_A Transcription antitermi 37.3 13 0.00043 26.5 1.3 39 6-46 11-52 (55)
199 1x79_B RAB GTPase binding effe 37.3 89 0.003 25.3 6.5 43 98-141 5-47 (112)
200 2dnr_A Synaptojanin-1; RRM dom 37.2 9.6 0.00033 29.7 0.7 34 18-56 50-83 (91)
201 2i2y_A Fusion protein consists 34.2 18 0.0006 28.0 1.8 24 14-37 10-33 (150)
202 1ufw_A Synaptojanin 2; RNP dom 30.6 38 0.0013 26.6 3.2 30 20-54 61-90 (95)
203 1f5n_A Interferon-induced guan 29.3 3.4E+02 0.012 26.9 10.4 72 102-175 511-582 (592)
204 3rio_A PTSGHI operon antitermi 27.4 14 0.00046 30.7 0.1 39 7-47 26-67 (180)
205 1apq_A Complement protease C1R 27.1 16 0.00056 23.7 0.5 12 265-276 29-40 (53)
206 2zix_A Crossover junction endo 26.7 7 0.00024 35.0 -1.9 55 6-60 25-95 (307)
207 1cz4_A VCP-like ATPase; double 23.3 82 0.0028 26.5 4.2 55 8-64 10-65 (185)
208 1auu_A SACY; antitermination, 22.2 30 0.001 24.5 1.1 38 6-46 11-51 (55)
209 1vq8_K 50S ribosomal protein L 21.5 45 0.0015 27.7 2.1 40 4-52 92-131 (132)
210 1whi_A Ribosomal protein L14; 21.4 45 0.0015 27.3 2.1 18 4-21 81-98 (122)
211 2y39_A Nickel and cobalt resis 21.4 1.2E+02 0.0041 24.8 4.6 40 103-142 20-59 (118)
212 3bbo_M Ribosomal protein L14; 20.7 45 0.0015 27.3 2.0 18 4-21 81-98 (121)
213 2hpu_A NOSL protein; alpha bet 20.1 59 0.002 27.5 2.7 38 3-40 94-133 (175)
No 1
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.98 E-value=1.4e-32 Score=236.82 Aligned_cols=140 Identities=49% Similarity=0.869 Sum_probs=135.9
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccccccCchhhhhcccCchhhhhh
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVDDEEGLSERTVSKKSSDYFKQR 81 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~DdeDGLpEK~l~~k~~~f~kER 81 (279)
+|..+.|+.|..|+|.|.|+|+|+...+|.+||..++.|.|+++.++|||+|.|....++.+|+|++.+. +++.|+++|
T Consensus 122 ~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~~~~~~~~~~~-~~~~~~~~r 200 (261)
T 3sde_A 122 PVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDDEDGLPEKLMQ-KTQQYHKER 200 (261)
T ss_dssp CEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEESSSCCCGGGSC-CCHHHHHHH
T ss_pred CeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCccCCCcchhhh-cchhhhhhc
Confidence 5788999999999999999999999999999999999999999999999999999999999999999885 799999999
Q ss_pred ccCCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy7437 82 SIGPRFATIGSFEFEYGTRWKQLYELYKQKEEALQKELKLEEEKLEAQMEFARYENETEIL 142 (279)
Q Consensus 82 E~gPRfa~~gsFE~EygqRWK~L~e~eKqqrE~l~reikee~EKLEaEME~a~~ehq~~lL 142 (279)
+.||||+.||||+|+|+++|++|++++++++++++++++++++||++||++|+|+||++||
T Consensus 201 ~~~p~~~~pgs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~ 261 (261)
T 3sde_A 201 EQPPRFAQPGTFEFEYASRWKALDEMEKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLM 261 (261)
T ss_dssp TSCSEECCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999874
No 2
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=8e-05 Score=56.77 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=43.4
Q ss_pred CcceeEEEeCCC----CCCCCceeeeccCCHHHHHHHHHc---cCCceeec----CCCCceEeecCccccc
Q psy7437 2 NIERAVVLVDDR----GNSKNEGIIEFTRKPAAAQALKRC---QDGVFFLT----QSLKPVIVEPLDLVDD 61 (279)
Q Consensus 2 ~VERAVViVDdR----GrstGeGiVEFa~Kp~A~kAL~rc---~eg~FlLT----tsprPviVEp~e~~Dd 61 (279)
+|. .+++.|.. |++.|.|+|+|+...+|.+||..+ ....|+.. ...+||.|.|....|.
T Consensus 34 ~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~~~~~~~~~~~v~p~~~~d~ 103 (114)
T 2dnl_A 34 PLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDS 103 (114)
T ss_dssp CCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEECCSSSCSEEEEEECCCCCCC
T ss_pred CEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEeccCCCcCCCeeeccCCcccCC
Confidence 355 44555544 799999999999999999999988 44445443 3357899999876443
No 3
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.35 E-value=0.00011 Score=56.50 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=41.2
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.|..+++|+|+ .|++.|.|+|+|+....|.+||. + .|..| .-|+|.|.+...
T Consensus 51 ~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~-~g~~~---~gr~i~V~~a~~ 103 (124)
T 1wel_A 51 IVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-R-HKQYM---GNRFIQVHPITK 103 (124)
T ss_dssp BCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-S-CSBCS---TTSCBEEEEECH
T ss_pred CccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-h-CCCeE---CCcEEEEEECCH
Confidence 35666666665 59999999999999999999999 4 66655 468899988754
No 4
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00031 Score=59.10 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=47.5
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccC------CHH--HHHHHHHcc-CCceeecCCCCceEeecCcccccccCchhhhhc
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTR------KPA--AAQALKRCQ-DGVFFLTQSLKPVIVEPLDLVDDEEGLSERTVS 71 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~------Kp~--A~kAL~rc~-eg~FlLTtsprPviVEp~e~~DdeDGLpEK~l~ 71 (279)
+|..+.+|.|.- |+|.|.|+|+|.. .++ |.+|+..|. .|+.+. .|++-|. .|+ +|.-.+++.
T Consensus 32 eV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~---Gr~irV~----ln~-~g~~~~~~~ 103 (136)
T 2j8a_A 32 EISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIM---GFKFEVI----LNK-HSILNNIIS 103 (136)
T ss_dssp CCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEET---TEEEEEE----ECC-TTHHHHHHH
T ss_pred CeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeec---CcEEEEE----ECc-ccHHHHHHH
Confidence 578888999987 8999999999993 433 899999998 899884 4566665 244 666688764
No 5
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.31 E-value=0.00011 Score=58.50 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=41.5
Q ss_pred cceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 3 IERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 3 VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
|....|+.|..|+|+|.|+|+|+..-.|.+||.. .|.+| .-|+|.|.+..
T Consensus 54 v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~--~~~~l---~gR~i~V~~a~ 103 (123)
T 2dha_A 54 KEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK--HKDLL---GKRYIELFRST 103 (123)
T ss_dssp GGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT--TTEES---SSCEECCEEEC
T ss_pred cceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh--CCCee---CCeEEEEEECC
Confidence 5677888888899999999999999999999996 66665 45788887653
No 6
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.29 E-value=0.00031 Score=50.73 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=43.5
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
.|..+.|+.|..|++.|.|+|+|.....|.+||. -.|..| .-++|.|.+....
T Consensus 35 ~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~--~~g~~~---~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 35 KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK--CNREYM---GGRYIEVFREKSG 87 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH--SCSEEE---TTEEEEEEEESSC
T ss_pred CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH--hCCcee---CCcEEEEEECCcC
Confidence 3667788889889999999999999999999999 456665 3578888876543
No 7
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.26 E-value=0.00027 Score=54.96 Aligned_cols=51 Identities=22% Similarity=0.414 Sum_probs=41.7
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
.|..+.|+.|..|+|.|.|+|+|+..-.|.+||. .+|.+| .-|+|.|.+..
T Consensus 41 ~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~--~~~~~~---~gr~i~V~~a~ 91 (109)
T 2dnn_A 41 RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK--RNRMLM---IQRYVEVSPAT 91 (109)
T ss_dssp CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH--TTTEEE---TTEEEEEEECC
T ss_pred CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh--cCCCeE---CCeEEEEEECC
Confidence 3667778888889999999999999999999994 367766 35788887763
No 8
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.21 E-value=0.00026 Score=51.48 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=41.1
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|..+.|+.|. .|+|.|.|+|+|+...+|.+||..++...| .-+++.|.+...
T Consensus 29 ~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~----~gr~i~V~~~~~ 82 (90)
T 3p5t_L 29 DILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL----HGQNPVVTPSNK 82 (90)
T ss_dssp CCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS----SSCCCEECCC--
T ss_pred ceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee----CCEEEEEEECCC
Confidence 57777788884 699999999999999999999998876544 367888877643
No 9
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.18 E-value=0.00033 Score=53.29 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=41.7
Q ss_pred ceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 4 ERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 4 ERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
..+.|+.|..|++.|.|+|+|+..-.|.+||.. .|..| .-++|.|.+...
T Consensus 44 ~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~--~~~~~---~gr~i~v~~a~~ 93 (114)
T 2cpy_A 44 NAVHVLVDNNGQGLGQALVQFKNEDDARKSERL--HRKKL---NGREAFVHVVTL 93 (114)
T ss_dssp TTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG--CSEEE---TTEEEEEEEECH
T ss_pred CeEEEEECCCCCcceEEEEEECCHHHHHHHHHh--CCCcc---CCeEEEEEECCH
Confidence 456677788899999999999999999999997 67555 468999988754
No 10
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.18 E-value=0.00033 Score=53.17 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=40.5
Q ss_pred eeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 5 RAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 5 RAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
...|+.|.. |+|.|.|+|+|....+|.+||+.++....-++-..|||.|+..
T Consensus 40 ~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~A 92 (95)
T 2lkz_A 40 NIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFA 92 (95)
T ss_dssp GEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEEC
T ss_pred EEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEc
Confidence 344555644 9999999999999999999999998655444456789998754
No 11
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.17 E-value=0.00043 Score=48.75 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=42.2
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|....|+.| ..|++.|.|+|+|....+|.+|+..++...| .-+|+.|.+...
T Consensus 27 ~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~----~g~~l~v~~a~~ 80 (83)
T 3md1_A 27 SYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL----NGRPLRINWAAK 80 (83)
T ss_dssp TEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE----TTEECEEEECCC
T ss_pred CeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee----CCcEEEEEecCc
Confidence 4666777778 5699999999999999999999998765443 467888877643
No 12
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.17 E-value=0.00045 Score=50.97 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=45.5
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|....|+.|..|++.|.|+|+|.....|.+||..++. ..|.....+|+.|.+...
T Consensus 41 ~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g-~~~~gg~~~~l~V~~a~~ 96 (105)
T 2dnh_A 41 VIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHG-SQTMPGASSSLVVKFADT 96 (105)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSS-CCCCTTCSSCCEEEESCS
T ss_pred CeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcC-CccCCCCCccEEEEECcc
Confidence 46777888888899999999999999999999997764 444444568999987754
No 13
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.13 E-value=0.00049 Score=53.07 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=42.8
Q ss_pred CcceeEEEeCCC--CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDR--GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdR--GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|..+.|+.|.+ |+|.|.|+|+|+...+|.+|+...+...| ..|||.|....
T Consensus 39 ~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~----~Gr~i~v~~a~ 92 (105)
T 2pe8_A 39 KVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF----GGRVVKACFYN 92 (105)
T ss_dssp CEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE----TTEECEEEECC
T ss_pred CEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE----CCcEEEEEEcC
Confidence 477777777754 68999999999999999999998876655 47999998763
No 14
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.13 E-value=0.00034 Score=52.44 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=39.7
Q ss_pred cceeE-EEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 3 IERAV-VLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 3 VERAV-ViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
|..+| |+.|..|++.|.|+|+|+....|.+||.. .|.+| .-|+|.|.+...
T Consensus 42 v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~--~~~~~---~gr~i~v~~~~~ 93 (104)
T 1wg5_A 42 VPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK--HKERI---GHRYIEIFKSSR 93 (104)
T ss_dssp EEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT--TTCCS---SSSCCEEEEECT
T ss_pred cceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh--Ccchh---CCcEEEEEECCH
Confidence 44434 55677899999999999999999999997 67666 356888876543
No 15
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.13 E-value=0.00098 Score=51.22 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=43.9
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.|....|+.|..|++.|.|+|+|....+|.+||..++...| .-+++.|+....
T Consensus 33 ~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~----~g~~l~V~~a~~ 85 (116)
T 2fy1_A 33 PISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSL----HGKAIKVEQAKK 85 (116)
T ss_dssp CCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBC----SSSBCEEEECCC
T ss_pred CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEE----CCEEEEEEECCC
Confidence 47777888888899999999999999999999998765443 358889988754
No 16
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.12 E-value=0.00051 Score=51.97 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=40.7
Q ss_pred eeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccc
Q psy7437 5 RAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVD 60 (279)
Q Consensus 5 RAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~D 60 (279)
.+.|+.|..|+|.|.|+|+|+....|.+||. . .|.+| .-|+|.|.+-....
T Consensus 43 ~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~-~~~~~---~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 43 RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-K-DKANM---QHRYVELFLNSTAG 93 (102)
T ss_dssp EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-T-SSCCS---SSSCCEEEEECCCC
T ss_pred EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-h-CCCeE---CCcEEEEEECCCCC
Confidence 5677888889999999999999999999996 3 66655 45788887655433
No 17
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=97.12 E-value=0.00026 Score=53.38 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=41.7
Q ss_pred cceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 3 IERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 3 VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
|....|+.|..|++.|.|+|+|+....|.+||. + .|.+| .-|+|.|.+...
T Consensus 41 v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~-~~~~~---~gr~i~V~~a~~ 91 (107)
T 2lmi_A 41 ENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-K-HRMYM---GQRYVEVYEINN 91 (107)
T ss_dssp TTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-T-TTCCS---SSSCCCCEECCH
T ss_pred cceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-h-Cccee---CCeEEEEEECCH
Confidence 667777888889999999999999999999999 4 56554 467888877643
No 18
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.09 E-value=0.00027 Score=56.82 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=38.0
Q ss_pred eeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 5 RAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 5 RAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
.+.|+.|..|+|.|.|+|+|+..-.|.+||.. .+..| .-|||.|.+..
T Consensus 72 ~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~--~~~~l---~gR~I~V~~a~ 119 (126)
T 2hgm_A 72 GITLPVDPEGKITGEAFVQFASQELAEKALGK--HKERI---GHRYIEVFKSS 119 (126)
T ss_dssp EEECCCCSSSSSCSEEEEEESSTTHHHHHHTT--TTCCB---TTBCCCCEEEC
T ss_pred EEEEEECCCCCCceEEEEEECCHHHHHHHHHH--CCCEE---CCEEEEEEECC
Confidence 55666777799999999999999999999985 44444 36788877653
No 19
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.05 E-value=0.00088 Score=48.49 Aligned_cols=55 Identities=25% Similarity=0.304 Sum_probs=42.7
Q ss_pred Cccee-EEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccc
Q psy7437 2 NIERA-VVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVD 60 (279)
Q Consensus 2 ~VERA-VViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~D 60 (279)
+|... .|+.| ..|++.|.|+|+|.....|.+||..++...| .-+|+.|.+....+
T Consensus 31 ~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 31 VILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL----CNRPITVSYAFKKD 87 (96)
T ss_dssp CBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE----TTEECEEEESCCCC
T ss_pred CeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE----CCEEEEEEEecccC
Confidence 35566 56666 6699999999999999999999997765443 36889998875543
No 20
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.04 E-value=0.00065 Score=50.94 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=44.3
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecC----CCCceEeecCc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQ----SLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTt----sprPviVEp~e 57 (279)
.|..+.|+.|..|++.|.|+|+|.....|.+||..++...|-... ..+|+.|....
T Consensus 51 ~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 51 QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred CEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 467778888888999999999999999999999988765553222 56788887553
No 21
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.04 E-value=0.00035 Score=56.49 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=42.6
Q ss_pred cceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 3 IERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 3 VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
|..+.|+.|..|+|+|.|+|+|+....|.+||. -.|..| .-|+|.|.+...
T Consensus 74 v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~--~~g~~l---~gr~i~V~~a~~ 124 (136)
T 2hgl_A 74 AAGVHFIYTREGRQSGEAFVELGSEDDVKMALK--KDRESM---GHRYIEVFKSHR 124 (136)
T ss_dssp STTEEEEECSSSCEEEEEEEECSSHHHHHHHHT--TTEEES---SSSEEEEEECCH
T ss_pred eeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh--cCCCEE---CCEEEEEEECCh
Confidence 677888888889999999999999999999999 456554 468999987643
No 22
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.02 E-value=0.00059 Score=49.31 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=41.9
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
+|....|+.|..|++.|.|+|+|.....|.+||..++...|. -+|+.|.+.
T Consensus 42 ~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~~a 92 (95)
T 2ywk_A 42 PLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY----GRPINVSGP 92 (95)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET----TEECEEECC
T ss_pred CEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC----CCEEEEEEc
Confidence 467777888888999999999999999999999987654432 578888764
No 23
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.00 E-value=0.00089 Score=49.35 Aligned_cols=53 Identities=25% Similarity=0.366 Sum_probs=43.2
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
+|....|+.| .|++.|.|+|+|....+|.+||..++...| .-+++.|.+....
T Consensus 41 ~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~V~~a~~~ 93 (103)
T 2d9p_A 41 TITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV----ATKPLYVALAQRK 93 (103)
T ss_dssp CEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBS----SSSBCEEEECSSC
T ss_pred CEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEe----CCcEEEEEEeccc
Confidence 4667777777 999999999999999999999998765443 4688998877543
No 24
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=96.99 E-value=0.00049 Score=50.83 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=40.6
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|..+.|+.|.. |+|.|.|+|+|+...+|.+||+....|..| .-|||.|+...
T Consensus 28 ~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~---~gr~i~V~~a~ 81 (91)
T 2lxi_A 28 QAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI---LGQKVSMHYSD 81 (91)
T ss_dssp CCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE---TTEEEEEECCC
T ss_pred EeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE---CCEEEEEEEcC
Confidence 355566666644 999999999999999999999976555544 35889887653
No 25
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=96.99 E-value=0.00039 Score=53.31 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=40.0
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeec
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEP 55 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp 55 (279)
+|.++.|+.|..|+|.|.|+|+|+...+|.+|+...+...| ..|||.|+.
T Consensus 53 ~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~----~Gr~i~v~~ 102 (104)
T 1jmt_A 53 EVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWF----NGQPIHAEL 102 (104)
T ss_dssp CEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEE----TTEECCEEE
T ss_pred ceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEE----CCEEEEEEE
Confidence 47777777777799999999999999999999998865544 257777653
No 26
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=96.97 E-value=0.00073 Score=50.70 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=39.7
Q ss_pred cceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCC-ceEeecCcc
Q psy7437 3 IERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLK-PVIVEPLDL 58 (279)
Q Consensus 3 VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtspr-PviVEp~e~ 58 (279)
|..+ .|+.+.|+|.|.|+|+|+...+|.+||..++...| ..+ |+.|.....
T Consensus 48 v~~v-~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~----~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 48 ITND-FYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL----DKQHTFRVNLFTD 99 (105)
T ss_dssp EEEE-ECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC----STTCEEEEECSCC
T ss_pred EEEE-EeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCccc----CCCceEEEEEcch
Confidence 4444 34477899999999999999999999998766443 255 999988753
No 27
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=96.95 E-value=0.00054 Score=51.14 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=42.4
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|..+.|+.|.. |+|.|.|+|+|+....|.+||..++...|- ..+|+.|....
T Consensus 38 ~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~---g~r~l~V~~a~ 91 (100)
T 3ns6_A 38 KVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD---LKHRLFLYTMK 91 (100)
T ss_dssp CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS---SSCBCEEEESH
T ss_pred CEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC---CCeEEEEEECc
Confidence 467777888877 999999999999999999999987654332 23788887664
No 28
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.94 E-value=0.0012 Score=45.77 Aligned_cols=49 Identities=14% Similarity=0.262 Sum_probs=37.6
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeec
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEP 55 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp 55 (279)
+|....|+.|. .|+|.|.|+|+|....+|.+|+...+ ..| .-+|+.|..
T Consensus 26 ~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~--~~~---~g~~l~v~~ 75 (77)
T 1uaw_A 26 EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR--HEL---DSKTIDPKV 75 (77)
T ss_dssp CCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT--CCC---SSCCCEEEE
T ss_pred CEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC--Ccc---CCEEEEEEe
Confidence 46677777775 49999999999999999999999877 222 346666654
No 29
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=96.91 E-value=0.0011 Score=47.23 Aligned_cols=51 Identities=27% Similarity=0.447 Sum_probs=40.1
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|....|+.|. .|++.|.|+|+|....+|.+|| .+ .|..| .-+++.|.+..
T Consensus 32 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~-~g~~~---~g~~l~V~~a~ 83 (89)
T 3ucg_A 32 SVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL-DESLF---RGRQIKVIPKR 83 (89)
T ss_dssp CEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GG-TTCEE---TTEECEEEETT
T ss_pred CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hc-CCCEE---CCcEEEEEEcc
Confidence 46667777774 6999999999999999999999 54 44444 46888888764
No 30
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=96.91 E-value=0.0012 Score=48.65 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=44.7
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
+|....|+.|.. |++.|.|+|+|.....|.+||..++...++ ...-+|+.|.+....
T Consensus 39 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~-~~~g~~l~v~~a~~~ 96 (106)
T 2dgp_A 39 KIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTL-PGMNRPIQVKPADSE 96 (106)
T ss_dssp CCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCC-TTCSSCCEEEECCCC
T ss_pred CeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCccc-CCCCceEEEEECCcc
Confidence 466667777754 999999999999999999999987765543 335789999887653
No 31
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=96.91 E-value=0.00084 Score=57.11 Aligned_cols=55 Identities=11% Similarity=0.036 Sum_probs=46.7
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVD 60 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~D 60 (279)
.|..+.|+.|..|+++|.|+|+|+...+|.+|+..++...| .-+||.|......+
T Consensus 211 ~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 211 SPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSL----GGSHLRVSFCAPGP 265 (284)
T ss_dssp CCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEE----TTEECEEEECCSSS
T ss_pred CeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc----CCeEEEEEEecCCC
Confidence 47788899999999999999999999999999998876554 56899998875533
No 32
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=96.89 E-value=0.00077 Score=51.88 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=43.3
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|..+.|+.|.. |+|.|.|+|+|....+|.+||..++...| .-+++.|+...
T Consensus 32 ~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~----~gr~i~V~~a~ 84 (110)
T 3s8s_A 32 EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV----MGNIIHAQLDI 84 (110)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TTEECEEEECS
T ss_pred CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE----CCeEEEEEECC
Confidence 477888889987 99999999999999999999998865544 36788887653
No 33
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.86 E-value=0.00075 Score=52.04 Aligned_cols=50 Identities=16% Similarity=0.166 Sum_probs=42.2
Q ss_pred cceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 3 IERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 3 VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
|....|+.|..|++.|.|+|+|+..-.|.+||. + +|..| .-|+|.|.+..
T Consensus 47 v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~-~g~~~---~gr~i~V~~a~ 96 (118)
T 2db1_A 47 VAGVHFIYTREGRQSGEAFVELESEDDVKLALK-K-DRESM---GHRYIEVFKSH 96 (118)
T ss_dssp GGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-G-TTEEE---TTEEEEEEEEC
T ss_pred ceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-c-CCCeE---CCeEEEEEECC
Confidence 677778888889999999999999999999999 4 67665 46889888764
No 34
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=96.86 E-value=0.00086 Score=49.60 Aligned_cols=51 Identities=24% Similarity=0.367 Sum_probs=41.7
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
+|....|+.|..|++.|.|+|+|.....|.+||..+....| .-+++.|...
T Consensus 55 ~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~V~~a 105 (107)
T 3ulh_A 55 TLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPL----DGRPMNIQLV 105 (107)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE----TTEECEEEEE
T ss_pred CeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEe----CCcEEEEEEe
Confidence 46778888899999999999999999999999998865443 3577777653
No 35
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.86 E-value=0.0012 Score=48.72 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=43.2
Q ss_pred CcceeEEEeCC--CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccccc
Q psy7437 2 NIERAVVLVDD--RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVDD 61 (279)
Q Consensus 2 ~VERAVViVDd--RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~Dd 61 (279)
+|....|+.|. .|++.|.|+|+|.....|.+||..+..|..|- -++|.|.......+
T Consensus 41 ~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~---g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 41 ELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY---GRRLVLEWADSEVT 99 (107)
T ss_dssp CEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS---SCBCEEEECCCCCC
T ss_pred CeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC---CCEEEEEeCCCCCC
Confidence 35555555553 79999999999999999999999885555543 57888888765433
No 36
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.85 E-value=0.0013 Score=48.02 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=42.7
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
+|....|+.|. .|++.|.|+|+|.....|.+||..++...| .-++|.|.+....
T Consensus 34 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~V~~a~~~ 88 (99)
T 1whw_A 34 PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF----QGRMLHVLPSTIK 88 (99)
T ss_dssp CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES----SSCEEEEEECCCC
T ss_pred CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE----CCcEEEEEEcCCC
Confidence 46666677776 699999999999999999999998765333 2688999887553
No 37
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.83 E-value=0.0013 Score=47.93 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=40.5
Q ss_pred Ccc-eeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIE-RAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VE-RAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|. .+.|+.|. .|++.|.|+|+|.....|.+||..++...|.-...++++.|....
T Consensus 35 ~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~ 92 (99)
T 2div_A 35 ETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYAT 92 (99)
T ss_dssp CCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETT
T ss_pred CcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecC
Confidence 355 56666774 699999999999999999999997776544322224457776653
No 38
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.81 E-value=0.0024 Score=46.09 Aligned_cols=56 Identities=27% Similarity=0.358 Sum_probs=43.0
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccccc
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVDD 61 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~Dd 61 (279)
+|....|+.|.. |++.|.|+|+|.....|.+||..++.-.| .-+++.|.+.....+
T Consensus 31 ~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 31 KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL----AGRPMRVGHVTERLD 87 (95)
T ss_dssp CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS----SSSCCEEEESSCCCC
T ss_pred CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee----CCcEEEEEEcccccC
Confidence 456666777744 99999999999999999999998765333 368899988755433
No 39
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.81 E-value=0.0012 Score=48.49 Aligned_cols=53 Identities=13% Similarity=0.225 Sum_probs=42.7
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|....|+.|..|++.|.|+|+|.....|.+||..++. ..| .-++|.|.....
T Consensus 43 ~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g-~~~---~g~~l~v~~a~~ 95 (100)
T 2do4_A 43 TVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDG-MTI---KENIIKVAISNS 95 (100)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT-EES---SSCEEEEEECCC
T ss_pred CeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCC-CEE---CCEEEEEEECCC
Confidence 46677788888899999999999999999999998765 333 358888887644
No 40
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=96.80 E-value=0.00076 Score=47.64 Aligned_cols=50 Identities=16% Similarity=0.241 Sum_probs=39.2
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeec
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEP 55 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp 55 (279)
+|....++.| ..|++.|.|+|+|....+|.+|+..++...| .-+|+.|.+
T Consensus 33 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~ 83 (85)
T 3mdf_A 33 DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL----FGRTIRVNL 83 (85)
T ss_dssp CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE----TTEECEEEE
T ss_pred CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE----CCcEEEEEE
Confidence 4566667777 6699999999999999999999997765443 357777765
No 41
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=96.79 E-value=0.001 Score=50.07 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=40.6
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
+|..+.|+.|.. |+|.|.|+|+|.....|.+||+.++ |..| .-+|+.|...
T Consensus 45 ~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln-g~~~---~gr~l~V~~A 96 (99)
T 4fxv_A 45 EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN-GLRL---QSKTIKVSYA 96 (99)
T ss_dssp CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHT-TCEE---TTEECEEEEC
T ss_pred CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhC-CCEE---CCEEEEEEEe
Confidence 467777888865 9999999999999999999999875 4444 3578888754
No 42
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.77 E-value=0.0012 Score=48.53 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=42.3
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|....|+.| +.|++.|.|+|+|.....|.+||..++...| .-+++.|.+...
T Consensus 34 ~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a~~ 87 (104)
T 1p1t_A 34 PVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF----SGRALRVDNAAS 87 (104)
T ss_dssp CCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC----SSSCBEEEETTC
T ss_pred CeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee----CCcEEEEEeCCC
Confidence 4666677777 4699999999999999999999998765443 468888887644
No 43
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.76 E-value=0.0019 Score=47.39 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=42.7
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVD 60 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~D 60 (279)
+|....|+.|. .|++.|.|+|+|.....|.+||..++...| .-++|.|.+.....
T Consensus 38 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 38 QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV----DGRQIRVDQAGKSS 93 (102)
T ss_dssp CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT----TSCCCEEEEEECCC
T ss_pred CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE----CCeEEEEEECCCCC
Confidence 46666666764 589999999999999999999998875543 36888888765433
No 44
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=96.76 E-value=0.0012 Score=46.72 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=39.7
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
+|....++.| ..|++.|.|+|+|.....|.+||..++.. .| .-+++.|.+.
T Consensus 32 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-~~---~g~~l~v~~a 83 (87)
T 3bs9_A 32 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ-WL---GGRQIRTNWA 83 (87)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EE---TTEECEEEEE
T ss_pred CEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC-EE---CCeEEEEEec
Confidence 4666677777 47999999999999999999999987653 33 2477777654
No 45
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.75 E-value=0.0013 Score=50.22 Aligned_cols=51 Identities=10% Similarity=0.041 Sum_probs=40.4
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|..+.|+.|..|+|.|.|+|+|+...+|.+||. . .|.-| .-++|.|.+-.
T Consensus 37 ~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~-~~~~~---~gr~l~V~~~~ 87 (103)
T 1s79_A 37 QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-T-PGQKY---KETDLLILFKD 87 (103)
T ss_dssp CEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-S-SCCCC---TTTTCEEEEHH
T ss_pred CEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-c-CCCEE---CCEEEEEEEch
Confidence 4667777777779999999999999999999999 3 45433 35888887653
No 46
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=96.75 E-value=0.0015 Score=47.98 Aligned_cols=46 Identities=26% Similarity=0.390 Sum_probs=36.4
Q ss_pred eEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeec
Q psy7437 6 AVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEP 55 (279)
Q Consensus 6 AVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp 55 (279)
..|+.| +.|++.|.|+|+|+....|.+||+.++...| .-+++.|..
T Consensus 51 v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~----~g~~l~V~~ 97 (99)
T 2la6_A 51 INLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF----SGNPIKVSF 97 (99)
T ss_dssp EEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS----SSSBCEEEE
T ss_pred EEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe----CCcEEEEEe
Confidence 556677 4599999999999999999999998775533 257777764
No 47
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.74 E-value=0.0019 Score=47.70 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=42.5
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
+|....|+.| +.|++.|.|+|+|....+|.+||.. .|..|- -++|.|.+....
T Consensus 42 ~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~--~~~~~~---g~~l~V~~a~~~ 95 (105)
T 2dh8_A 42 EVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS--RPHTLD---GRNIDPKPCTPR 95 (105)
T ss_dssp CEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH--CSEEET---TEEEBCCCSCCS
T ss_pred CeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh--CCCeEC---CEEEEEEEccCC
Confidence 4667777887 5699999999999999999999998 666553 478888876543
No 48
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.73 E-value=0.0013 Score=48.30 Aligned_cols=54 Identities=30% Similarity=0.394 Sum_probs=42.9
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.|....|+.|..|++.|.|+|+|.....|.+||..++....| .-+|+.|.+...
T Consensus 36 ~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---~g~~l~v~~a~~ 89 (104)
T 2dhg_A 36 SCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGL---GSKPVRLSVAIP 89 (104)
T ss_dssp TEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSS---SSSCCCCCBCCC
T ss_pred CeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCccc---CCEeEEEEEccC
Confidence 466777888888999999999999999999999977654413 247788877644
No 49
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.69 E-value=0.0021 Score=48.07 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=40.8
Q ss_pred eeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 5 RAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 5 RAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
...|+.| +.|++.|.|+|+|...-.|.+||..++...| .-+++.|......
T Consensus 52 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~----~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 52 MIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF----QGSKLKVSLARKK 103 (113)
T ss_dssp SEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE----TTEECEEECSSCC
T ss_pred CEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc----CCCEEEEEECCCC
Confidence 4666777 6699999999999999999999998765443 2688888877553
No 50
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.67 E-value=0.003 Score=47.53 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=42.4
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
+|....|+.|. .|++.|.|+|+|.....|.+||.. .|..| .-++|.|.+....
T Consensus 53 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~--~~~~~---~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 53 KLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA--RPHSI---DGRVVEPKRAVAR 106 (116)
T ss_dssp CCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS--CSEEE---TTEEEEEECCSSC
T ss_pred CEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh--CCcEE---CCEEEEEEECCCC
Confidence 46777777774 499999999999999999999997 66555 4578888887554
No 51
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.67 E-value=0.0017 Score=47.56 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=41.7
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|....|+.| ..|++.|.|+|+|...-+|.+||..++. ..| .-++|.|.....
T Consensus 38 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~---~g~~l~V~~a~~ 91 (102)
T 2cqb_A 38 DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE-SEL---FGRTIRVNLAKP 91 (102)
T ss_dssp CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTT-EEE---TTEEEEEEECCC
T ss_pred CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEE---CCcEEEEEeCCC
Confidence 4666677777 4599999999999999999999997754 444 368888887654
No 52
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0018 Score=49.54 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=41.5
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
+|....|+.|..|++.|.|+|+|.....|.+|+..++.-.+ ..+|+.|.+....
T Consensus 26 ~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~----~g~~i~v~~~~~~ 79 (166)
T 3md3_A 26 PIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQI----ENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEE----TTEECEEEECCCC
T ss_pred CeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCcc----CCCeeEEEEcCCC
Confidence 46677788888899999999999999999999987765443 3567777666443
No 53
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=96.67 E-value=0.001 Score=47.99 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=38.4
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
.|...+++.|. .|++.|.|+|+|.....|.+||..++...| .-+++.|+.-
T Consensus 41 ~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~----~gr~l~v~~a 92 (95)
T 2ek1_A 41 VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI----GSRKVKLSGP 92 (95)
T ss_dssp BCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE----TTEECEEECC
T ss_pred CccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE----CCcEEEEEec
Confidence 35556666664 489999999999999999999997665433 3577777653
No 54
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.66 E-value=0.0013 Score=51.86 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=42.0
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|..+.|+.|. .|++.|.|+|+|.....|.+||..++... | .-+|+.|.+...
T Consensus 96 ~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~---~g~~l~v~~a~~ 149 (158)
T 2kn4_A 96 RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV-L---DGRELRVQMARY 149 (158)
T ss_dssp CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEE-S---SSSEEEEEEECC
T ss_pred CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-E---CCeEEEEEECCC
Confidence 46677777774 69999999999999999999999776533 3 468899887643
No 55
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=96.66 E-value=0.0021 Score=49.13 Aligned_cols=52 Identities=21% Similarity=0.327 Sum_probs=42.2
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|....|+.|..|++.|.|+|+|.....|.+||..++.. .| .-+++.|....
T Consensus 61 ~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~---~g~~l~V~~a~ 112 (124)
T 2kt5_A 61 TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV-PL---DGRPMDIQLVA 112 (124)
T ss_dssp CCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTE-ES---SSCEEEEEEEC
T ss_pred CeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCC-EE---CCcEEEEEEeC
Confidence 477778888888999999999999999999999977643 33 35788887753
No 56
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.66 E-value=0.0026 Score=47.09 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=43.6
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccC-----CceeecCCCCceEeecCccccc
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQD-----GVFFLTQSLKPVIVEPLDLVDD 61 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~e-----g~FlLTtsprPviVEp~e~~Dd 61 (279)
+|....|+.|.. |++.|.|+|+|...-+|.+||..++. |..| .-++|.|.+.....+
T Consensus 41 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~---~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 41 DLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL---DGRQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES---SSCEEEEECCCCCCC
T ss_pred CeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE---cCEEEEEEECCCCcc
Confidence 355666666744 89999999999999999999998873 4444 468899888765443
No 57
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=96.63 E-value=0.0018 Score=46.44 Aligned_cols=51 Identities=14% Similarity=0.271 Sum_probs=39.5
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|....|+.|.. |+|.|.|+|+|.... |.+|+..++...| .-+++.|.+..
T Consensus 27 ~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~----~g~~l~V~~a~ 78 (90)
T 2ki2_A 27 KVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF----MGRTIRVTEAN 78 (90)
T ss_dssp CCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC----SSSSCSEEEC-
T ss_pred CEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE----CCeEEEEEEcC
Confidence 466666777754 999999999999999 9999998775543 26788887754
No 58
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.63 E-value=0.003 Score=46.20 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=41.2
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVD 60 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~D 60 (279)
+|....|+.|. .|++.|.|+|+|....+|.+||. . .|..| .-++|.|.+....+
T Consensus 36 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~-~~~~~---~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 36 VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-M-HFHDI---MGKKVEVKRAEPRD 90 (99)
T ss_dssp CEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-H-CCCBS---SSCBCEEEECCCCC
T ss_pred CeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-h-CCCEE---CCeEEEEEECCCCc
Confidence 35666666664 49999999999999999999998 4 55544 36788888875533
No 59
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=96.62 E-value=0.0016 Score=48.43 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=40.4
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|....|+.| ..|++.|.|+|+|.....|.+||..++...| ..++|.|.+..
T Consensus 52 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~----~g~~l~V~~a~ 104 (110)
T 1oo0_B 52 EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI----MGQTIQVDWCF 104 (110)
T ss_dssp CEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE----TTEECEEEESE
T ss_pred CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE----CCcEEEEEEcc
Confidence 3556666666 4599999999999999999999998765433 36888887754
No 60
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.61 E-value=0.0019 Score=46.50 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=38.7
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeec
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEP 55 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp 55 (279)
+|....|+.|.. |++.|.|+|+|.....|.+||..++. ..| .-+++.|..
T Consensus 42 ~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~---~g~~l~v~~ 92 (94)
T 2e5h_A 42 KVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN-KQL---FGRVIKASI 92 (94)
T ss_dssp CEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTT-EEE---TTEEEEEEE
T ss_pred CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCC-Cee---CCcEEEEEe
Confidence 466666777755 89999999999999999999997764 333 257777764
No 61
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.61 E-value=0.00059 Score=50.16 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=38.3
Q ss_pred EEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccccc
Q psy7437 7 VVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVDDE 62 (279)
Q Consensus 7 VViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~Dde 62 (279)
+||+|. .|+|.|.|+|+|+....|.+||. + .|..| .-+++.|.........
T Consensus 47 ~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l-~g~~~---~g~~l~V~~a~~~~~~ 98 (101)
T 1fj7_A 47 LAVVDVRTGTNRKFGYVDFESAEDLEKALE-L-TGLKV---FGNEIKLEKPKGRDGT 98 (101)
T ss_dssp CCCCEEEEETTTTEEEEEESSHHHHHHHHH-G-GGCCB---TTBCCEEECCSCCCCS
T ss_pred EEEecCCCCCcCcEEEEEECCHHHHHHHHh-c-CCcEE---CCcEEEEEEcCCCCCC
Confidence 456664 49999999999999999999998 5 44444 2688888877554443
No 62
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=96.60 E-value=0.0017 Score=49.24 Aligned_cols=53 Identities=26% Similarity=0.394 Sum_probs=41.6
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|....|+.| ..|++.|.|+|+|.....|.+||..++...| .-+++.|.+...
T Consensus 52 ~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i----~g~~l~V~~a~~ 105 (108)
T 2jrs_A 52 RIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL----AGRPMKVGHVTE 105 (108)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS----SSSCCEEECSCS
T ss_pred CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE----CCEEEEEEEccc
Confidence 4666777777 4599999999999999999999997765332 358888887644
No 63
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.60 E-value=0.0026 Score=47.47 Aligned_cols=52 Identities=25% Similarity=0.345 Sum_probs=42.9
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|....|+.|..|++.|.|+|+|.....|.+||..++...| .-+++.|....
T Consensus 41 ~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a~ 92 (114)
T 2do0_A 41 VVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL----FDRPMHVKMDE 92 (114)
T ss_dssp CEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEE----TTEECEEEECS
T ss_pred CeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe----CCCEEEEEEcc
Confidence 46777888888899999999999999999999997765443 36888888754
No 64
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=96.60 E-value=0.0014 Score=50.32 Aligned_cols=52 Identities=13% Similarity=0.080 Sum_probs=40.6
Q ss_pred CcceeEEEeCCC---CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDR---GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdR---GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|..++|+.|.. |++.|.|+|+|+...+|.+|+...+..-| .-|||.|..+.
T Consensus 41 ~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f----~GR~i~v~~~~ 95 (105)
T 3v4m_A 41 LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF----ANRVVVTKYCD 95 (105)
T ss_dssp CEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE----TTEECEEEEEC
T ss_pred CEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe----CCCEEEEEEeC
Confidence 466666666554 36899999999999999999998865544 57899998764
No 65
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.59 E-value=0.0016 Score=51.99 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=40.9
Q ss_pred EeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccccccCchh
Q psy7437 9 LVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVDDEEGLSE 67 (279)
Q Consensus 9 iVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~DdeDGLpE 67 (279)
.++..|++.|.|+|+|....+|.+|+..++...|. .+|+.|.......+..+..+
T Consensus 64 ~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~----gr~l~V~~a~~~~~~~~~~~ 118 (127)
T 2a3j_A 64 VVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ----GNPLVITFSETPQSQVAEDG 118 (127)
T ss_dssp EECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT----TSCCEEEECCCCCHHHHCC-
T ss_pred EeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC----CCEEEEEEccCcchhccccc
Confidence 34456899999999999999999999988665443 67999988765544333333
No 66
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.59 E-value=0.0028 Score=46.65 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=41.8
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|....|+.|. .|++.|.|+|+|+....|.+||..++... | .-+||.|.+...
T Consensus 41 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~---~g~~l~v~~a~~ 94 (105)
T 1x5u_A 41 PVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIK-L---YGKPIRVNKASA 94 (105)
T ss_dssp CEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCB-C---SSCBCEEEETTT
T ss_pred CeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCe-E---CCeEEEEEECCC
Confidence 35666666765 59999999999999999999999877533 3 258899988754
No 67
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=96.59 E-value=0.0019 Score=47.87 Aligned_cols=52 Identities=17% Similarity=0.111 Sum_probs=38.2
Q ss_pred cceeEEEeCC--CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 3 IERAVVLVDD--RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 3 VERAVViVDd--RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
|....|+.|. .|++.|.|+|+|....+|.+|| .++ |..| .-++|.|......
T Consensus 45 i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~-g~~~---~g~~l~V~~a~~~ 98 (100)
T 2j76_E 45 ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN-EESL---GNRRIRVDVADQA 98 (100)
T ss_dssp EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTT-TCCB---TTBCCCCEECCCS
T ss_pred CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcC-CCEE---CCeEEEEEeccCC
Confidence 3445556664 6999999999999999999999 554 4443 3577887776543
No 68
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=96.58 E-value=0.0017 Score=53.01 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=42.4
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
.|..+.|+.| ..|++.|.|+|+|....+|.+||..++...| .-++|.|.+..
T Consensus 83 ~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~----~Gr~l~V~~a~ 135 (156)
T 3n9u_C 83 DVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL----NGEKVDVRPAT 135 (156)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE----TTEECEEEECC
T ss_pred cEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE----CCeEeEEEEcC
Confidence 5677778888 4699999999999999999999998765443 36888888764
No 69
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.57 E-value=0.0018 Score=46.55 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=40.2
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
+|....|+.|.. |++.|.|+|+|....+|.+||..++. ..| .-+++.|...
T Consensus 41 ~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~~---~g~~l~v~~a 92 (95)
T 2cqc_A 41 PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG-MEL---DGRRIRVSGP 92 (95)
T ss_dssp CEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTT-EEE---TTEEEEEECC
T ss_pred CeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCC-CEE---CCEEEEEEec
Confidence 466777777755 89999999999999999999998754 333 3578888764
No 70
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.57 E-value=0.002 Score=47.39 Aligned_cols=53 Identities=8% Similarity=0.101 Sum_probs=41.5
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|....|+.|.. |++.|.|+|+|...-+|.+||..++...| .-+++.|.+...
T Consensus 39 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~V~~a~~ 92 (103)
T 2dnm_A 39 RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL----DGRELRVQVARY 92 (103)
T ss_dssp CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB----TTBCCEEEECSS
T ss_pred CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE----CCcEEEEEECCc
Confidence 456666677755 99999999999999999999998765443 357888887643
No 71
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=96.56 E-value=0.0027 Score=47.71 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=43.4
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
+|....|+.|. .|++.|.|+|+|.....|.+||..++...| .-++|.|.+....
T Consensus 51 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~V~~a~~~ 105 (115)
T 2cpz_A 51 NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI----GMKRLKVQLKRSK 105 (115)
T ss_dssp CCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE----TTEECEEECCCCS
T ss_pred CeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE----CCEEEEEEEcCCC
Confidence 46777788886 599999999999999999999998865443 2688888876543
No 72
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=96.55 E-value=0.0021 Score=47.42 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=40.7
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|....|+.|.. |++.|.|+|+|....+|.+||..++...| ..+++.|.+..
T Consensus 49 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~V~~a~ 101 (106)
T 1p27_B 49 EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL----MGQPISVDWCF 101 (106)
T ss_dssp CEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS----SSSBCEEEESE
T ss_pred CeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE----CCcEEEEEeec
Confidence 466667777755 99999999999999999999998765433 25888887653
No 73
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=96.54 E-value=0.0012 Score=47.01 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=31.1
Q ss_pred cceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCce
Q psy7437 3 IERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVF 42 (279)
Q Consensus 3 VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~F 42 (279)
|... .|+++.|+|.|.|+|+|+...+|.+||..++...|
T Consensus 34 i~~v-~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 72 (81)
T 2krb_A 34 ITND-FYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 72 (81)
T ss_dssp EEEE-ECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC
T ss_pred eEEE-EecCCCCcEeEEEEEEECCHHHHHHHHHHhcCccc
Confidence 4443 34477899999999999999999999997765443
No 74
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.54 E-value=0.0014 Score=47.75 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=38.8
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
.|...+++.| ..|++.|.|+|+|.....|.+||..++... | .-+++.|+..
T Consensus 41 ~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-~---~g~~l~V~~a 92 (98)
T 2cqp_A 41 VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP-I---GSRKVKLVLG 92 (98)
T ss_dssp CCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCE-E---TTEECEEEES
T ss_pred CccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCe-e---CCeEEEEEEc
Confidence 3555666666 559999999999999999999999776543 3 3578888764
No 75
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=96.52 E-value=0.0028 Score=46.21 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=40.6
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.|....|+.| +.|++.|.|+|+|.....|.+|+..++.. .| ..+++.|.....
T Consensus 28 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~-~~---~g~~l~V~~a~~ 81 (96)
T 2x1f_A 28 PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY-QL---GSRFLKCGYSSN 81 (96)
T ss_dssp CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC-EE---TTEECEEEECSC
T ss_pred CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC-eE---CCeEEEEEEcCC
Confidence 3566666667 35999999999999999999999977653 33 248888887644
No 76
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=96.51 E-value=0.001 Score=52.76 Aligned_cols=53 Identities=15% Similarity=0.279 Sum_probs=42.7
Q ss_pred CcceeEEEeCCC-----CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDR-----GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdR-----GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|..++|+.|.. |++.|.|+|+|+...+|.+|+...+..-| .-|+|.|..+..
T Consensus 51 ~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f----~GR~i~v~~~~~ 108 (118)
T 3ue2_A 51 AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF----AGRKVVAEVYDQ 108 (118)
T ss_dssp CEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE----TTEECEEEEECH
T ss_pred CEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE----CCcEEEEEEcCh
Confidence 477777887754 56789999999999999999998876655 579999987643
No 77
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.49 E-value=0.0027 Score=47.71 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=38.9
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
.|....|+.|.. |++.|.|+|+|...-.|.+|| .+ .|..| .-++|.|.+.
T Consensus 51 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l-~g~~~---~g~~l~V~~a 101 (114)
T 2cq4_A 51 KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GL-TGQRL---LGVPIIVQAS 101 (114)
T ss_dssp CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HH-TTEEE---TTEEEEEEEH
T ss_pred CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-Hc-CCCEe---CCeEEEEEec
Confidence 356666667766 999999999999999999999 55 45544 3578888765
No 78
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.49 E-value=0.0031 Score=46.37 Aligned_cols=53 Identities=26% Similarity=0.243 Sum_probs=41.8
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|....|+.| ..|++.|.|+|+|.....|.+||..++...| .-++|.|.+...
T Consensus 41 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~v~~a~~ 94 (103)
T 2cq0_A 41 SISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY----DHLILNVEWAKP 94 (103)
T ss_dssp CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE----TTEECEEEESSC
T ss_pred CeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee----CCcEEEEEECCC
Confidence 4667777777 4699999999999999999999998765443 257888877644
No 79
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=96.48 E-value=0.0034 Score=47.80 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=41.9
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.|....|+.|. .|++.|.|+|+|....+|.+||..++...| .-++|.|.....
T Consensus 48 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a~~ 101 (126)
T 3ex7_B 48 EIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL----MGQPISVDWCFV 101 (126)
T ss_dssp CEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS----SSSBCEEEESEE
T ss_pred CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee----CCeEEEEEEecC
Confidence 35666666774 699999999999999999999998865443 468888887654
No 80
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=96.47 E-value=0.0024 Score=49.40 Aligned_cols=55 Identities=20% Similarity=0.169 Sum_probs=42.3
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVD 60 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~D 60 (279)
+|....|+.|. .|++.|.|+|+|...-.|.+||..++.. .| .-++|.|.......
T Consensus 68 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~---~g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 68 PIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGF-NI---LNKRLKVALAASGH 123 (139)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTE-EC---SSCEEEEEESSCCC
T ss_pred CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC-EE---CCeEEEEEECCCCC
Confidence 46677777774 4899999999999999999999977653 33 26788888775533
No 81
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=96.47 E-value=0.0022 Score=48.94 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=40.9
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
+|..+-|+.| +|+|.|.|+|+|...-+|.+||..++... | .-+++.|.+....
T Consensus 31 ~v~~v~i~~d-~~~~kg~afV~f~~~~~A~~Ai~~l~~~~-~---~g~~i~V~~a~~~ 83 (115)
T 4f25_A 31 NILSCKVVCD-ENGSKGYGFVHFETQEAAERAIEKMNGML-L---NDRKVFVGRFKSR 83 (115)
T ss_dssp CEEEEEEEEE-TTEEEEEEEEEESCHHHHHHHHHHHTTCE-E---TTEECEEEESSCC
T ss_pred CEEEEEEeec-CCCCCceEEEEECCHHHHHHHHHHcCCCE-E---CCEEEEEEECCCc
Confidence 4556666666 56799999999999999999999876543 3 3588999887653
No 82
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.46 E-value=0.0036 Score=46.28 Aligned_cols=54 Identities=20% Similarity=0.148 Sum_probs=39.6
Q ss_pred cceeEEEeCCC--CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccccc
Q psy7437 3 IERAVVLVDDR--GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVDD 61 (279)
Q Consensus 3 VERAVViVDdR--GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~Dd 61 (279)
|....|+.|.. |++.|.|+|+|....+|.+|| .++ |..| .-++|.|.+.....+
T Consensus 41 i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~-g~~~---~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 41 ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN-EESL---GNKRIRVDVADQAQD 96 (104)
T ss_dssp EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGG-TCEE---TTEECEEEECCCCCC
T ss_pred ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcC-CCEe---CCcEEEEEEccCCCC
Confidence 34455555554 999999999999999999999 554 4444 468888888765433
No 83
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=96.45 E-value=0.0023 Score=44.40 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=37.3
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeec
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEP 55 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp 55 (279)
+|....|+.|. .|+|.|.|+|+|....+|.+||. . .|..| .-+||.|.+
T Consensus 25 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~-~~~~~---~g~~l~v~~ 74 (75)
T 2mss_A 25 KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-I-HFHEI---NNKMVECKK 74 (75)
T ss_dssp CCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-S-SCCCS---SSCCCEEEC
T ss_pred CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-C-CCCEE---CCEEEEEEe
Confidence 46666677775 59999999999999999999998 3 45444 356777654
No 84
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.44 E-value=0.0025 Score=51.22 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=42.5
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
.|..+.|+.| +.|++.|.|+|+|...-.|.+||..++...| .-++|.|.+..
T Consensus 151 ~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~----~g~~i~V~~a~ 203 (216)
T 2qfj_A 151 KIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDL----GGQYLRVGKAV 203 (216)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBC----SSSBCEEEECS
T ss_pred CeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEe----CCcEEEEEEec
Confidence 4777888888 4699999999999999999999998875443 46888887653
No 85
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=96.43 E-value=0.0023 Score=48.58 Aligned_cols=51 Identities=27% Similarity=0.409 Sum_probs=40.8
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|....|+.| ..|++.|.|+|+|....+|.+|| . -.|..| .-+++.|.+..
T Consensus 62 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~-l~g~~~---~g~~l~V~~a~ 113 (124)
T 2jwn_A 62 SINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-A-MDETVF---RGRTIKVLPKR 113 (124)
T ss_dssp CEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-T-TTTCEE---TTEECEEEESS
T ss_pred CEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-h-cCCCeE---CCeEEEEEECC
Confidence 4667777787 57999999999999999999999 4 455554 35888888764
No 86
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=96.42 E-value=0.0018 Score=50.32 Aligned_cols=52 Identities=25% Similarity=0.071 Sum_probs=39.4
Q ss_pred eEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 6 AVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 6 AVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
..|+.|. .|++.|.|+|+|... .|.+||..++.....+.-..|+|.|.....
T Consensus 55 v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 55 VRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKG 107 (131)
T ss_dssp EECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCC
T ss_pred EEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCC
Confidence 4555565 499999999999999 999999998875222233468888887654
No 87
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.33 E-value=0.0025 Score=48.77 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=37.9
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeec
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEP 55 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp 55 (279)
+|....|+.| ..|++.|.|+|+|+....|.+||...+.. .| .-+++.|..
T Consensus 89 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~-~~---~g~~l~v~~ 139 (140)
T 2ku7_A 89 DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES-EL---FGRTIRVNL 139 (140)
T ss_dssp CEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEE-EE---TTEEEEEEC
T ss_pred CEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC-EE---CCEEEEEEe
Confidence 4666667777 55999999999999999999999977543 22 256776653
No 88
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=96.32 E-value=0.003 Score=47.38 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=42.1
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.|....|+.| ..|++.|.|+|+|...-.|.+||..++. ..| .-++|.|.+...
T Consensus 41 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~---~g~~l~V~~a~~ 94 (115)
T 2dgo_A 41 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG-QWL---GGRQIRTNWATR 94 (115)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTT-CEE---TTEECEEEESSC
T ss_pred CeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEE---CCEEEEEEEccC
Confidence 4666777777 4799999999999999999999998875 333 247888888754
No 89
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.31 E-value=0.0069 Score=44.52 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=39.0
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
+|....|+.| .+.+.|.|+|+|...-.|.+||..++...| .-++|.|.+....
T Consensus 41 ~v~~v~i~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a~~~ 93 (103)
T 2cq3_A 41 KILDVEIIFN-ERGSKGFGFVTFENSADADRAREKLHGTVV----EGRKIEVNNATAR 93 (103)
T ss_dssp CEEEEEEECC-TTTTCCEEEEEESCHHHHHHHHHHHTTCEE----TTEECEEEECCSS
T ss_pred CeEEEEEEec-CCCCcEEEEEEECCHHHHHHHHHHhCCCEE----CCEEEEEEEcccC
Confidence 3555455555 455999999999999999999997765443 3688888876543
No 90
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.31 E-value=0.0029 Score=44.87 Aligned_cols=38 Identities=21% Similarity=0.374 Sum_probs=31.7
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccC
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQD 39 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~e 39 (279)
+|....|+.| +.|++.|.|+|+|....+|.+||..++.
T Consensus 31 ~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (85)
T 1x4e_A 31 KIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA 69 (85)
T ss_dssp CEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC
Confidence 4666777777 4599999999999999999999997654
No 91
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.29 E-value=0.0042 Score=46.52 Aligned_cols=51 Identities=12% Similarity=0.029 Sum_probs=38.4
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|....|+.| |++.|.|+|+|....+|.+|+..++...| ..+++.|.+...
T Consensus 34 ~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~v~~a~~ 84 (115)
T 3lqv_A 34 PIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNV----SNRYLVVLYYNA 84 (115)
T ss_dssp CEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBS----SSCBCEEEECCH
T ss_pred CeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEE----CCeEEEEEEecC
Confidence 3555545544 67799999999999999999998755443 368899988754
No 92
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=96.28 E-value=0.002 Score=52.37 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=39.0
Q ss_pred ceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 4 ERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 4 ERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
..+.|+.|..|+|+|.|+|+|+....|.+||. . .|.+| .-|+|.|.+-..
T Consensus 73 ~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~-~-~g~~l---~gR~i~V~~a~~ 122 (139)
T 2hgn_A 73 VRVHIEIGPDGRVTGEADVEFATHEEAVAAMS-K-DRANM---QHRYIELFLNST 122 (139)
T ss_dssp SEEECCCSSSSCSSCCCEEECSHHHHHHHHTT-C-CSCSS---SSCCCCCEECCC
T ss_pred eEEEEEECCCCCCceEEEEEeCCHHHHHHHHh-h-CCCEE---CCEEEEEEECCC
Confidence 35667778889999999999999999999993 3 66655 356777766544
No 93
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=96.28 E-value=0.0018 Score=47.03 Aligned_cols=48 Identities=25% Similarity=0.260 Sum_probs=37.6
Q ss_pred EEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 7 VVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 7 VViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
|.+|+..|++.|.|+|+|.....|.+||..++...| .-+++.|.+...
T Consensus 43 v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a~~ 90 (96)
T 1fjc_A 43 IRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI----DGRSVSLYYTGE 90 (96)
T ss_dssp ECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEE----TTEEEEEEECSS
T ss_pred EEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE----CCeEEEEEEcCC
Confidence 334477799999999999999999999998765322 467888887654
No 94
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.26 E-value=0.0053 Score=44.92 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=40.0
Q ss_pred eeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccc
Q psy7437 5 RAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVD 60 (279)
Q Consensus 5 RAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~D 60 (279)
...|+.| ..|++.|.|+|+|.....|.+||..++...| .-++|.|.......
T Consensus 41 ~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 41 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI----DGNKVTLDWAKPKG 93 (102)
T ss_dssp EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE----TTEECEEEECCCCC
T ss_pred EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE----CCeEEEEEEecCCC
Confidence 4456666 4699999999999999999999998776433 25788888765533
No 95
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.25 E-value=0.0013 Score=50.89 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=46.4
Q ss_pred CcceeEEEeCCCC---CCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccccc
Q psy7437 2 NIERAVVLVDDRG---NSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVDD 61 (279)
Q Consensus 2 ~VERAVViVDdRG---rstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~Dd 61 (279)
+|....|+.|..| ++.|.|+|+|....+|.+|+..++.. .++....+|+.|.|......
T Consensus 29 ~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~-~~~~~~~~~~~~~~~~~~~~ 90 (175)
T 3nmr_A 29 AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNM-KVLPGMHHPIQMKPADSEKN 90 (175)
T ss_dssp CEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTT-CCCTTCSSCCEEEECGGGCC
T ss_pred CEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCc-EEccCCccceEEcccccccc
Confidence 4667778888776 89999999999999999999987654 44455678888888765444
No 96
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.23 E-value=0.0044 Score=45.41 Aligned_cols=48 Identities=25% Similarity=0.290 Sum_probs=37.8
Q ss_pred EEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 7 VVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 7 VViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.|+.|..|++.|.|+|+|...-.|.+||..++. ..| .-++|.|.+...
T Consensus 43 ~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~---~g~~l~v~~a~~ 90 (101)
T 2fc9_A 43 KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNK-REI---EGRAIRLELQGP 90 (101)
T ss_dssp ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSS-EEE---TTEEEEEEECSS
T ss_pred EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCC-CEe---CCeEEEEEEcCC
Confidence 345566799999999999999999999997765 333 268888887654
No 97
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=96.21 E-value=0.0036 Score=47.13 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=36.6
Q ss_pred cceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeec
Q psy7437 3 IERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEP 55 (279)
Q Consensus 3 VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp 55 (279)
|....|+.| +.|++.|.|+|+|.....|.+||+.++. ..| .-+++.|+.
T Consensus 67 i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g-~~~---~g~~l~V~~ 116 (118)
T 2khc_A 67 VISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNG-FQV---GTKRLKVQL 116 (118)
T ss_dssp EEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCC-CEE---TTEECCEEE
T ss_pred EEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCC-CEE---CCEEEEEEe
Confidence 555556666 4599999999999999999999997764 333 246666653
No 98
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.19 E-value=0.0039 Score=45.32 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=41.2
Q ss_pred CcceeEEEeCCC--C--CCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 2 NIERAVVLVDDR--G--NSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 2 ~VERAVViVDdR--G--rstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
+|....|+.|.. | ++.|.|+|+|....+|.+||..++...|. -+++.|.+....
T Consensus 31 ~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~~a~~~ 88 (98)
T 2cpf_A 31 AIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD----GHKLEVRISERA 88 (98)
T ss_dssp CEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET----TEECEEECSSCS
T ss_pred CeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC----CeEEEEEEccCC
Confidence 455666666543 5 99999999999999999999987664432 678888887543
No 99
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=96.18 E-value=0.0037 Score=50.33 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=41.9
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|..+.|+.| ..|++.|.|+|+|.....|.+||..++...| ..+||.|.+...
T Consensus 98 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~----~g~~l~V~~a~~ 151 (165)
T 1rk8_A 98 EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI----MGQTIQVDWCFV 151 (165)
T ss_dssp CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE----TTEECEEEESEE
T ss_pred CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE----CCEEEEEEEecC
Confidence 4666777777 4699999999999999999999998765433 358888887643
No 100
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=96.18 E-value=0.006 Score=50.63 Aligned_cols=52 Identities=21% Similarity=0.327 Sum_probs=42.2
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|..+.|+.|..|++.|.|+|+|.....|.+||..++.. .| .-+||.|+...
T Consensus 114 ~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~-~l---~Gr~l~V~~a~ 165 (177)
T 2f3j_A 114 TLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGV-PL---DGRPMDIQLVA 165 (177)
T ss_dssp CCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTC-BC---SSSBCEEEEES
T ss_pred CeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCC-EE---CCEEEEEEEec
Confidence 477777888888999999999999999999999977643 33 35888887753
No 101
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.17 E-value=0.0048 Score=45.67 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=40.6
Q ss_pred cceeEEEeCCC--CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 3 IERAVVLVDDR--GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 3 VERAVViVDdR--GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
|..+.|+..|+ |++.|.|+|+|.....|.+||..+..|.+.| .-+++.|.+....
T Consensus 36 v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~--~g~~l~V~~a~~~ 92 (109)
T 2dis_A 36 VLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGHQIAVDWAEPE 92 (109)
T ss_dssp EEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB--TTBCCEEEESCSS
T ss_pred ceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee--cCCeEEEEEcCCC
Confidence 55555552444 6999999999999999999999886553332 2478899887653
No 102
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.11 E-value=0.0049 Score=46.05 Aligned_cols=43 Identities=23% Similarity=0.170 Sum_probs=35.5
Q ss_pred CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 13 RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 13 RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
.|++.|.|+|+|....+|.+||..++...| .-+|+.|......
T Consensus 63 ~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~----~g~~l~v~~a~~~ 105 (115)
T 2cpx_A 63 TGRMRGQAFITFPNKEIAWQALHLVNGYKL----YGKILVIEFGKNK 105 (115)
T ss_dssp CSSSCSEEEEECSSHHHHHHHHHHSTTCBC----SSCBCEEEECCCC
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEe----CCcEEEEEEccCC
Confidence 699999999999999999999997765333 4788888877543
No 103
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.11 E-value=0.0061 Score=47.91 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=39.8
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|....|+.|. .|++.|.|+|+|.....|.+||..++. ..| .-++|.|....
T Consensus 72 ~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng-~~i---~g~~l~V~~a~ 124 (129)
T 2kxn_B 72 PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANG-MEL---DGRRIRVDFSI 124 (129)
T ss_dssp CEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTT-CCS---SSSCCEESCCS
T ss_pred CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC-CEE---CCEEEEEEEec
Confidence 46666666674 489999999999999999999998765 333 35788887653
No 104
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.11 E-value=0.0066 Score=45.82 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=37.9
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|....|+.| +|++.|.|+|+|...-.|.+|+..++...| .-+++.|++..
T Consensus 55 ~i~~v~i~~~-~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~----~g~~l~V~~a~ 105 (109)
T 2err_A 55 KILDVEIIFN-ERGSKGFGFVTFENSADADRAREKLHGTVV----EGRKIEVNNAT 105 (109)
T ss_dssp CCSCEEECCB-TTBCTTEEEEECCCSHHHHHHHHHHTTCEE----TTEECEEEECC
T ss_pred CEEEEEEEEC-CCCCceEEEEEECCHHHHHHHHHHcCCCEE----CCEEEEEEECC
Confidence 3555555555 567999999999999999999997765443 25777777653
No 105
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=96.11 E-value=0.0065 Score=46.00 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=39.4
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|....|+.|.. |++.|.|+|+|...-.|.+||... | +.| .-++|.|.....
T Consensus 51 ~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~--~-~~l--~g~~l~V~~a~~ 103 (109)
T 2rs2_A 51 EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS--R-HEL--DSKTIDPKVAFP 103 (109)
T ss_dssp CEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS--C-EEE--TTEEEEEEECCC
T ss_pred CeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC--C-CcC--CCEEEEEEEccC
Confidence 466666777744 999999999999999999999975 3 222 357888876543
No 106
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=96.10 E-value=0.006 Score=43.70 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=39.1
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|....|+. +.|++.|.|+|+|.....|.+||..++...| .-+++.|.....
T Consensus 34 ~v~~~~i~~-~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~----~g~~l~v~~a~~ 85 (92)
T 2dgv_A 34 HVLYADIKM-ENGKSKGCGVVKFESPEVAERACRMMNGMKL----SGREIDVRIDRN 85 (92)
T ss_dssp CEEEEEEEE-SSSCEEEEEEEEESSHHHHHHHHHHHTTCCB----TTBCCCCEECSC
T ss_pred CEEEEEEEc-cCCCcceEEEEEECCHHHHHHHHHHhCCCEE----CCcEEEEEEcCC
Confidence 355555555 5899999999999999999999998765443 256777776543
No 107
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=96.10 E-value=0.0038 Score=53.83 Aligned_cols=52 Identities=12% Similarity=0.208 Sum_probs=42.8
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
.|..+.|+.| ..|++.|.|+|+|....+|.+||..++...| .-++|.|....
T Consensus 96 ~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~----~Gr~l~V~~a~ 148 (229)
T 3q2s_C 96 DILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL----HGQNPVVTPVN 148 (229)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB----TTBCCEEEECC
T ss_pred ceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE----CCEEeEEEECC
Confidence 5788888888 4699999999999999999999997765443 25888888764
No 108
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.09 E-value=0.0037 Score=47.06 Aligned_cols=51 Identities=27% Similarity=0.351 Sum_probs=40.0
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|....|+.|. .|++.|.|+|+|.....|.+||..++ + .| .-++|.|.+..
T Consensus 43 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~-~-~~---~g~~l~V~~a~ 94 (116)
T 2cqd_A 43 DIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-P-II---DGRKANVNLAY 94 (116)
T ss_dssp CEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS-C-EE---TTEECEEEEST
T ss_pred CeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC-C-cC---CCEEEEEEEcc
Confidence 35566666663 49999999999999999999999877 4 43 25888888764
No 109
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.08 E-value=0.0085 Score=44.01 Aligned_cols=51 Identities=18% Similarity=0.114 Sum_probs=38.2
Q ss_pred cceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 3 IERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 3 VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
|....|+.| ++.+.|.|+|+|...-.|.+||..++... | .-+++.|.....
T Consensus 42 i~~v~i~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~---~g~~l~V~~a~~ 92 (103)
T 2cqi_A 42 CKSCKMITE-HTSNDPYCFVEFYEHRDAAAALAAMNGRK-I---LGKEVKVNWATT 92 (103)
T ss_dssp EEEEEEECC-CCSSCCEEEEEESSHHHHHHHHHHHTTEE-E---TTEEEEEEECCC
T ss_pred EeEEEEEec-CCCCCCEEEEEECCHHHHHHHHHHhCCCC-c---CCCeEEEEECCC
Confidence 555445554 66789999999999999999999775443 3 258888887654
No 110
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.07 E-value=0.0092 Score=43.83 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=41.3
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccccc
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVDD 61 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~Dd 61 (279)
+|....|+.|.. |++.|.|+|+|.....|.+||.. +.. -.-++|.|.+.....+
T Consensus 41 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~---~~~---~~g~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 41 EVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ---RHM---IDGRWCDCKLPNSKQS 95 (103)
T ss_dssp CEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS---CEE---ETTEEEEEECCCTTCC
T ss_pred CeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc---CCe---eCCeEEEEEecCCCCc
Confidence 466777778754 99999999999999999999983 432 2468888887755433
No 111
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=96.04 E-value=0.0052 Score=48.66 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=41.0
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVD 60 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~D 60 (279)
.|..+.|+.|. .|++.|.|+|+|....+|.+||.. .|..| .-++|.|.+....+
T Consensus 130 ~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~--~~~~~---~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ--KYHTV---NGHNCEVRKALSKQ 184 (196)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC--SCCEE---TTEECEEEECC---
T ss_pred CeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh--CCcEE---CCEEEEEEecCChh
Confidence 46777788885 699999999999999999999986 35544 35788888775543
No 112
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.02 E-value=0.011 Score=44.87 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=39.1
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
+|..+ +|.|. .+.|.|+|+|.....|.+|+..++...| ..|||.|......
T Consensus 52 ~v~~v-~i~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~----~gr~l~v~~a~~~ 102 (112)
T 2dit_A 52 QIRKL-LLFDR--HPDGVASVSFRDPEEADYCIQTLDGRWF----GGRQITAQAWDGT 102 (112)
T ss_dssp CCSEE-EEETT--CTTCEEEEECSCHHHHHHHHHHSTTCEE----TTEECEEEECCSC
T ss_pred CEeEE-EEecC--CCCEEEEEEECCHHHHHHHHHHcCCCEE----CCcEEEEEEeCCC
Confidence 35665 55654 4899999999999999999998865444 4789999887543
No 113
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=95.96 E-value=0.0078 Score=47.63 Aligned_cols=53 Identities=9% Similarity=0.094 Sum_probs=42.7
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|....|+.|.. |++.|.|+|+|....+|.+||..++...| .-++|.|++...
T Consensus 65 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~----~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 65 DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL----DDRIIRTDWDAG 118 (156)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE----TTEECEEEEESC
T ss_pred CeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE----CCeEEEEEECCC
Confidence 466777777754 89999999999999999999998865443 468899988754
No 114
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=95.93 E-value=0.0048 Score=42.63 Aligned_cols=48 Identities=10% Similarity=0.218 Sum_probs=34.9
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEee
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVE 54 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVE 54 (279)
+|....++.|.. |++.|.|+|+|+...+|.+||.. .|.-| .-++|.|.
T Consensus 25 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~--~~~~~---~g~~l~v~ 73 (75)
T 1iqt_A 25 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KYHNV---GLSKCEIK 73 (75)
T ss_dssp CCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT--SSCCB---TTBCCCEE
T ss_pred CeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh--CCCeE---CCEEEEEE
Confidence 456666667744 99999999999999999999985 44333 34555543
No 115
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=95.82 E-value=0.0063 Score=43.28 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=36.5
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEee
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVE 54 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVE 54 (279)
+|....|+.|.. |++.|.|+|+|....+|.+||.. .|..| .-++|.|.
T Consensus 37 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~---~g~~i~v~ 85 (87)
T 3s7r_A 37 EVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ--KEHRL---DGRVIDPK 85 (87)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS--SCEEE---TTEEEEEE
T ss_pred CEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh--CCCEE---CCEEEEEE
Confidence 467777788854 99999999999999999999975 33332 34666664
No 116
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=95.76 E-value=0.011 Score=55.97 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=42.9
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
+|..+.|++| ..|++.|.|+|+|....+|.+||..++.. .| .-++|.|......
T Consensus 128 ~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~-~i---~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 128 PIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK-KI---DGRRVLVDVERGR 182 (437)
T ss_pred CeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC-EE---CCEEEEEEEeCCC
Confidence 4777777888 46999999999999999999999987644 33 4678888876543
No 117
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=95.75 E-value=0.0062 Score=50.45 Aligned_cols=52 Identities=27% Similarity=0.447 Sum_probs=41.6
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.|..+.|+.| +|.+.|.|+|+|...-+|.+||..++ |..| .-+||.|.+...
T Consensus 129 ~i~~~~i~~d-~~~~~g~~fV~f~~~~~a~~Ai~~ln-g~~~---~g~~i~V~~a~~ 180 (213)
T 4f02_A 129 NILSCKVVCD-ENGSKGYGFVHFETQEAAERAIEKMN-GMLL---NDRKVFVGRFKS 180 (213)
T ss_dssp CEEEEEEEEE-TTEEEEEEEEEESSHHHHHHHHHHHT-TCEE---TTEECEEEECCC
T ss_pred CeEEEEeecc-CCCCceEEEEEeCCHHHHHHHHHHhC-CCEE---CCEEEEEEEcCC
Confidence 4667777777 46689999999999999999999886 4444 468999988754
No 118
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=95.74 E-value=0.0041 Score=45.67 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=37.4
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
.|....|+.|..|++.|.|+|+|....+|.+||. .|..| .-+++.|.+.
T Consensus 35 ~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~---~~~~~---~g~~l~v~~a 83 (102)
T 2xs2_A 35 SVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE---SQINF---HGKKLKLGPA 83 (102)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT---CCCEE---TTEECEEEEE
T ss_pred CeEEEEEEECCCCCccceEEEEECCHHHHHHHHh---CCCeE---CCEEEEEEEC
Confidence 4677788888889999999999999999999999 44443 2344544433
No 119
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.72 E-value=0.011 Score=43.58 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=39.5
Q ss_pred cceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 3 IERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 3 VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
|....|+.|.. |++.|.|+|+|...-.|.+|| .+ .|..| .-++|.|.+...
T Consensus 41 i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l-~g~~~---~g~~l~V~~a~~ 92 (103)
T 2dng_A 41 IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TY-DGALL---GDRSLRVDIAEG 92 (103)
T ss_dssp EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GG-TTCEE---TTEECEEEECCC
T ss_pred ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hh-CCCeE---CCeEEEEEEecC
Confidence 55566677754 999999999999999999999 54 45444 357888887654
No 120
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=95.70 E-value=0.012 Score=44.92 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=39.6
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|....++.|. .|++.|.|+|+|.....|.+||..++. ..+ ..+|+.|.+..
T Consensus 28 ~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~-~~~---~g~~l~v~~~~ 80 (167)
T 1fxl_A 28 EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG-LRL---QTKTIKVSYAR 80 (167)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT-CEE---TTEECEEEECC
T ss_pred CeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCC-Ccc---CCceEEEEecC
Confidence 46667777776 699999999999999999999997764 333 24666666554
No 121
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.70 E-value=0.011 Score=44.69 Aligned_cols=53 Identities=11% Similarity=0.140 Sum_probs=38.3
Q ss_pred CcceeEEEeCCC----CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDR----GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdR----GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|..+.|+.|.. +++.|.|+|+|+...+|.+||..++...| .-+|+.|.....
T Consensus 44 ~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~----~gr~l~V~~a~~ 100 (111)
T 2cpi_A 44 KIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV----DGRTLKASLGTT 100 (111)
T ss_dssp CEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE----TTEEEEEESCCC
T ss_pred CEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE----CCEEEEEEeccc
Confidence 355655555542 37789999999999999999997765433 367888877643
No 122
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=95.70 E-value=0.0053 Score=51.15 Aligned_cols=53 Identities=15% Similarity=0.279 Sum_probs=42.4
Q ss_pred CcceeEEEeCCC-----CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDR-----GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdR-----GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.|..++|+.|.. |++.|.|+|+|+.--+|.+|+...+..-| ..|||.|.-+..
T Consensus 155 ~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~----~gr~i~~~~~~~ 212 (222)
T 3dxb_A 155 AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF----AGRKVVAEVYDQ 212 (222)
T ss_dssp CEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS----SSSBCEEEECCH
T ss_pred CeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE----CCeEEEEEEcCH
Confidence 467777775544 48899999999999999999998876654 589999988743
No 123
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=95.65 E-value=0.0042 Score=43.90 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=37.9
Q ss_pred CcceeEEEeCCC--CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 2 NIERAVVLVDDR--GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 2 ~VERAVViVDdR--GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
+|....|+.|.. |++.|.|+|+|....+|.+|+..++... | .-+++.|++.
T Consensus 30 ~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~---~g~~l~v~~a 82 (88)
T 4a8x_A 30 KIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ-I---DGQEITATAV 82 (88)
T ss_dssp CEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCE-E---TTEECEEEEE
T ss_pred CEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCe-E---CCeEEEEEEC
Confidence 355555666654 4499999999999999999999776543 3 3577777765
No 124
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=95.62 E-value=0.009 Score=45.99 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=39.8
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|....|+.|. .|++.|.|+|+|....+|.+|+..++. ..+ ..+|+.|.+...
T Consensus 29 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~-~~~---~g~~l~v~~~~~ 82 (168)
T 1b7f_A 29 PINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNG-ITV---RNKRLKVSYARP 82 (168)
T ss_dssp CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT-CEE---TTEECEEEECCC
T ss_pred CeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCC-CEe---CCcEEEEEecCC
Confidence 45666667774 599999999999999999999997654 333 356777766543
No 125
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=95.60 E-value=0.0021 Score=50.28 Aligned_cols=43 Identities=30% Similarity=0.364 Sum_probs=35.6
Q ss_pred CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 12 DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 12 dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
..|++.|.|+|+|....+|.+||..++...| .-+||.|.....
T Consensus 87 ~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~----~g~~l~V~~a~~ 129 (143)
T 3egn_A 87 KEGRMKGQAFIGLPNEKAAAKALKEANGYVL----FGKPMVVQFARS 129 (143)
T ss_dssp EETTTEEEEEEECSSHHHHHHHHHHHTTBEE----TTEECEEEECCC
T ss_pred cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe----CCcEEEEEECCC
Confidence 5699999999999999999999998765443 368899887643
No 126
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=95.56 E-value=0.0095 Score=47.04 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=40.3
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|....|+.|. .|++.|.|+|+|.....|.+||..++...| .-+++.|.+..
T Consensus 73 ~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i----~g~~l~V~~a~ 125 (135)
T 2lea_A 73 RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL----DGRELRVQMAR 125 (135)
T ss_dssp CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS----SSSCCEEEECC
T ss_pred CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE----CCEEEEEEECC
Confidence 46666666664 599999999999999999999997765443 25788888754
No 127
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.48 E-value=0.024 Score=43.71 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=35.1
Q ss_pred cceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 3 IERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 3 VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
|..+.|+ |++.|.|+|+|.....|.+||.. ..| ...+|+.|.+...
T Consensus 44 V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~-~~~-----~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 44 VLNLVLS----SKKPGTAVVEFATVKAAELAVQN-EVG-----LVDNPLKISWLEG 89 (100)
T ss_dssp EEEEEEE----SSSSSEEEEEESCHHHHHHHHHT-CCB-----CSSSBCEEECSSC
T ss_pred EEEEEEc----cCCCCEEEEEECCHHHHHHHHHh-cCC-----CCCCeEEEEEccC
Confidence 4444444 79999999999999999999997 222 2478999987644
No 128
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=94.42 E-value=0.0025 Score=48.11 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=37.5
Q ss_pred eEEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 6 AVVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 6 AVViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
..|+.| +.|++.|.|+|+|....+|.+||..++...|. -++|.|.....
T Consensus 45 v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a~~ 94 (116)
T 2lcw_A 45 INLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS----GNPIKVSFATR 94 (116)
Confidence 445666 55999999999999999999999977653332 57787777543
No 129
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=95.39 E-value=0.013 Score=46.34 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=37.8
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|....|+.|. .|++.|.|+|+|+..-.|.+||.. .|..| .-+++.|.+..
T Consensus 39 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~--~~~~~---~g~~l~v~~~~ 90 (196)
T 1l3k_A 39 TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA--RPHKV---DGRVVEPKRAV 90 (196)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT--CSCEE---TTEECEEEECC
T ss_pred CEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc--CCCEE---CCEEeeeeccc
Confidence 46677777775 499999999999999999999986 44433 34556665543
No 130
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=95.36 E-value=0.013 Score=49.68 Aligned_cols=53 Identities=25% Similarity=0.336 Sum_probs=41.6
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|....|+.|. .|++.|.|+|+|.....|.+|+..++.. .+ ..+|+.|.+...
T Consensus 121 ~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~-~~---~g~~i~v~~a~~ 174 (284)
T 3smz_A 121 SLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK-PL---GPRTLYVHWTDA 174 (284)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC-EE---TTEECEEEECCG
T ss_pred CeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC-Ee---CCcEEEEEECCC
Confidence 46667777775 5999999999999999999999887653 33 467888877654
No 131
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.34 E-value=0.013 Score=42.94 Aligned_cols=50 Identities=8% Similarity=0.078 Sum_probs=38.2
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|....|+.|..+ .|.|+|+|.....|.+||..++...| .-+++.|....
T Consensus 39 ~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~----~gr~l~V~~a~ 88 (96)
T 2dgx_A 39 KVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKI----GSKKILVSLAT 88 (96)
T ss_dssp CEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEE----TTEEEEEEECC
T ss_pred cEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEE----CCeEEEEEEcC
Confidence 4666667777666 78999999999999999998765433 26788887653
No 132
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=95.27 E-value=0.0079 Score=47.06 Aligned_cols=49 Identities=20% Similarity=0.327 Sum_probs=36.8
Q ss_pred EEEeC-CCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccc
Q psy7437 7 VVLVD-DRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVD 60 (279)
Q Consensus 7 VViVD-dRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~D 60 (279)
++|+| ..|++.|.|+|+|+...+|.+||. -.|..|. -+|+.|.+....+
T Consensus 43 ~~~~~~~~~~~~g~afV~f~~~~~a~~A~~--l~g~~~~---g~~l~v~~~~~~~ 92 (175)
T 1fje_B 43 LAVVDVRTGTNRKFGYVDFESAEDLEKALE--LTGLKVF---GNEIKLEKPKGRD 92 (175)
T ss_dssp CCCCEEEEETTTTEEEEEESSHHHHHHHHH--GGGEEET---TEEEEEECCCCSS
T ss_pred EEEEECCCCccccEEEEEECCHHHHHHHHh--cCCCEeC---CeEEEEecCCCcc
Confidence 34444 349999999999999999999995 4555553 6788887776543
No 133
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=95.19 E-value=0.013 Score=49.20 Aligned_cols=52 Identities=8% Similarity=-0.069 Sum_probs=41.0
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|....|+.|..|++.|.|+|+|+...+|.+||...+ . +-.-+||.|.+...
T Consensus 135 ~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~--~---~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 135 QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG--Q---KYKETDLLILFKDD 186 (193)
T ss_dssp CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT--C---EETTEECEEEETTT
T ss_pred CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC--C---eECCEEEEEEEhHH
Confidence 4666667778889999999999999999999998653 2 23468888887654
No 134
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.90 E-value=0.023 Score=44.67 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=36.3
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
+|..+.|+.| |.|.|+|+|....+|.+||..++...| ..+|+.|...
T Consensus 99 ~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a 145 (150)
T 2i2y_A 99 PLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTL----CGCRVRVELS 145 (150)
T ss_dssp CEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCS----SSSCCEEEEC
T ss_pred CEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEE----CCeEEEEEEc
Confidence 3556666655 789999999999999999998766433 4688888765
No 135
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=94.88 E-value=0.018 Score=44.34 Aligned_cols=35 Identities=17% Similarity=0.425 Sum_probs=29.4
Q ss_pred CcceeEEEeC-CCCCCCCceeeeccCCHHHHHHHHH
Q psy7437 2 NIERAVVLVD-DRGNSKNEGIIEFTRKPAAAQALKR 36 (279)
Q Consensus 2 ~VERAVViVD-dRGrstGeGiVEFa~Kp~A~kAL~r 36 (279)
+|....|+.| ..|+|.|.|+|+|....+|.+||..
T Consensus 29 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 29 TVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp CEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred CEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 3556666777 4699999999999999999999994
No 136
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=94.81 E-value=0.021 Score=48.70 Aligned_cols=53 Identities=9% Similarity=-0.018 Sum_probs=35.8
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|....|+.|..|++.|.|+|+|.....|.+|+..++. ..| ..+|+.|.+...
T Consensus 144 ~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~---~g~~l~v~~a~~ 196 (292)
T 2ghp_A 144 VALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNG-LKI---EGYTLVTKVSNP 196 (292)
T ss_dssp CCCEEECC-------CCEEEEECSSHHHHHHHHHHHTT-CEE---TTEECEEEECCC
T ss_pred CeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCC-CEe---CCcEEEEEECCC
Confidence 56777777788899999999999999999999998764 333 347777776543
No 137
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.73 E-value=0.04 Score=40.18 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=33.4
Q ss_pred CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 14 GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 14 GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+++.|.|+|+|.....|.+||..++...| .-+++.|.....
T Consensus 46 ~~~~g~afV~f~~~~~a~~Ai~~l~g~~~----~g~~l~v~~a~~ 86 (97)
T 1x5p_A 46 DPPRNCAFVTYEKMESADQAVAELNGTQV----ESVQLKVNIARK 86 (97)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHTTTEEE----TTEEEEEECCSS
T ss_pred cCCCCEEEEEECCHHHHHHHHHHhCCCeE----CCeEEEEEECCC
Confidence 48899999999999999999998765443 468888887654
No 138
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=94.71 E-value=0.018 Score=45.30 Aligned_cols=60 Identities=12% Similarity=0.124 Sum_probs=41.9
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccccccCchhh
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVDDEEGLSER 68 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~DdeDGLpEK 68 (279)
.|...+| ..+ .+.|.|+|+|+...+|.+|+...+.. +| .-|+|.|+.+...+-...+|+.
T Consensus 43 ~V~~v~i-~~~--~~~G~~fV~f~~~e~A~~Ai~~lnG~-~f---~GR~i~v~~~~~~~y~~~fp~a 102 (114)
T 3s6e_A 43 GVIHIYV-DKN--SAQGNVYVKCPSIAAAIAAVNALHGR-WF---AGKMITAAYVPLPTYHNLFPDS 102 (114)
T ss_dssp CCSEEEE-CTT--CTTCCEEEECSSHHHHHHHHHHHTTC-EE---TTEECEEEEECHHHHHHHCGGG
T ss_pred CEEEEEE-ecC--CCcEEEEEEECCHHHHHHHHHHhCCC-EE---CCEEEEEEEEcHHHHHHhCccc
Confidence 3555433 222 46899999999999999999987654 44 5799999887554434444443
No 139
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.69 E-value=0.031 Score=41.80 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=37.3
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceee-cCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFL-TQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlL-TtsprPviVEp~e~ 58 (279)
+|..+.|+.| |.|+|+|+....|.+||..++...|.= ....++|.|.+...
T Consensus 41 ~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 41 DVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp CEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred CEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 3566666666 999999999999999999877544431 12238899887654
No 140
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=94.60 E-value=0.047 Score=39.83 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=38.1
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
+|....|+.| +.|.|+|+|...-+|.+|+..++...| .-+++.|.+....
T Consensus 26 ~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 26 PLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVI----CGSRVRVELSTGM 75 (101)
T ss_dssp CCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCS----SSCCCEEEESSSC
T ss_pred CeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeE----CCcEEEEEEccCC
Confidence 4555566655 889999999999999999997765433 3677888877553
No 141
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.59 E-value=0.049 Score=39.28 Aligned_cols=50 Identities=18% Similarity=0.096 Sum_probs=36.0
Q ss_pred ccee-EEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 3 IERA-VVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 3 VERA-VViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
|..+ +|+.| +.+|.|+|+|.....|.+||..++...| .-+|+.|......
T Consensus 42 v~~~~~i~~~---~~~~~afV~f~~~~~a~~Ai~~l~g~~~----~g~~l~V~~a~~~ 92 (96)
T 2e44_A 42 VESCEQVNTD---SETAVVNVTYSSKDQARQALDKLNGFQL----ENFTLKVAYIPDE 92 (96)
T ss_dssp EEEEEEECCS---SSSEEEEEEESSHHHHHHHHHHHTTCBC----SSCBCEEEECCCC
T ss_pred eEEEEEeecC---CCCCEEEEEECCHHHHHHHHHHhCCCEE----CCcEEEEEEcCcc
Confidence 4444 34443 3456699999999999999997766443 3688999877654
No 142
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=94.52 E-value=0.013 Score=42.31 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=34.5
Q ss_pred CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 13 RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 13 RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.|++.|.|+|+|....+|.+|+..++...| ..+|+.|.....
T Consensus 47 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~v~~a~~ 88 (97)
T 1nu4_A 47 SLKMRGQAFVIFKEVSSATNALRSMQGFPF----YDKPMRIQYAKT 88 (97)
T ss_dssp HHHHTTCEEEEESSHHHHHHHHHHHTTCEE----TTEECEEEECSS
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE----CCcEEEEEEccC
Confidence 478899999999999999999998776444 368888887644
No 143
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.38 E-value=0.045 Score=40.60 Aligned_cols=42 Identities=17% Similarity=0.038 Sum_probs=33.5
Q ss_pred CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 13 RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 13 RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.+++.|.|+|+|.....|.+||..++...| .-+++.|.+...
T Consensus 57 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~V~~a~~ 98 (109)
T 1x4a_A 57 RRGGPPFAFVEFEDPRDAEDAVYGRDGYDY----DGYRLRVEFPRS 98 (109)
T ss_dssp SSSSSCCEEEEESCHHHHHHHHHHHTTCEE----TTEECEEECCCC
T ss_pred CCCCCcEEEEEECCHHHHHHHHHHcCCCEE----CCeEEEEEEccc
Confidence 357999999999999999999997765433 357888887643
No 144
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=94.20 E-value=0.036 Score=43.20 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=31.3
Q ss_pred CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 14 GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 14 GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
+++.|.|+|+|+....|.+||..++. ..| .-|++.|++-
T Consensus 64 ~~~rGfaFV~F~~~e~A~~Ai~~lng-~~l---~Gr~i~V~~a 102 (111)
T 2jvr_A 64 RDFDGTGALEFPSEEILVEALERLNN-IEF---RGSVITVERD 102 (111)
T ss_dssp CSSSCCEEEEESSHHHHHHHHHHTTT-EEE---TTEEEEEEES
T ss_pred CCCCCEEEEEECCHHHHHHHHHHcCC-CEE---CCeEEEEEEC
Confidence 36899999999999999999998754 433 3678888764
No 145
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=94.08 E-value=0.032 Score=46.09 Aligned_cols=40 Identities=23% Similarity=0.125 Sum_probs=33.6
Q ss_pred CcceeEEEeCCC-CCCCCceeeeccCCHHHHHHHHHccCCc
Q psy7437 2 NIERAVVLVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGV 41 (279)
Q Consensus 2 ~VERAVViVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~ 41 (279)
+|..+.|+.|.. |++.|.|+|+|...-+|.+||..++...
T Consensus 41 ~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~ 81 (213)
T 4f02_A 41 PILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDV 81 (213)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhh
Confidence 467777788754 9999999999999999999999876543
No 146
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.06 E-value=0.057 Score=39.35 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=32.2
Q ss_pred CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 14 GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 14 GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
|++.|.|+|+|.....|.+||..++...| .-+++.|+...
T Consensus 53 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~V~~a~ 92 (97)
T 2e5j_A 53 QGPRRRAFLHYPDSAAAQQAVSCLQGLRL----GTDTLRVALAR 92 (97)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCCS----SSSCCEEEECC
T ss_pred CCCCcEEEEEECCHHHHHHHHHHhCCCEE----CCcEEEEEEcC
Confidence 58999999999999999999997765443 35778887654
No 147
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=94.02 E-value=0.036 Score=44.44 Aligned_cols=51 Identities=20% Similarity=0.177 Sum_probs=36.0
Q ss_pred CcceeEEEeCC-CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 2 NIERAVVLVDD-RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 2 ~VERAVViVDd-RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
+|....|+.|. .|++.|.|+|+|...-.|.+||..++. ..| .-+++.|...
T Consensus 54 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~-~~~---~g~~l~v~~~ 105 (216)
T 2qfj_A 54 PIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNS-VML---GGRNIKVGRP 105 (216)
T ss_dssp CEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSS-CCC---C-CCCEEECC
T ss_pred CEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccC-Cee---CCeeEEEecC
Confidence 35666666775 699999999999999999999997754 333 2456666443
No 148
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=93.98 E-value=0.052 Score=42.35 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=31.6
Q ss_pred CCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 15 NSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 15 rstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
++.|.|+|||+...+|.+|++.++...+.| ..+|+.|.--
T Consensus 55 ~~kg~AFVef~~~~~A~~Av~~ln~~~~~i--~Gr~i~V~~S 94 (100)
T 3r27_A 55 PKKRQALVEFEDVLGACNAVNYAADNQIYI--AGHPAFVNYS 94 (100)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSCEEE--TTEEEEEEEC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhcCCCcee--CCcEEEEEec
Confidence 356899999999999999999988665543 4578887653
No 149
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=93.76 E-value=0.06 Score=45.97 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=28.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy7437 147 CRFVEEALQKELKLEEEKLEAQMEFARYENETEIL 181 (279)
Q Consensus 147 ~r~~~e~~~~~~~~~~~kle~qmE~a~~e~e~~~~ 181 (279)
...+.+...+.++.+.++|+++|++|+|+||.++|
T Consensus 227 ~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~ 261 (261)
T 3sde_A 227 EKQQREQVDRNIREAKEKLEAEMEAARHEHQLMLM 261 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcC
Confidence 34455666778888899999999999999999864
No 150
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=93.24 E-value=0.13 Score=39.85 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=32.7
Q ss_pred CCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 15 NSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 15 rstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
++.|.|+|+|....+|.+||...+...| .-+++.|.....
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~----~g~~l~V~~a~~ 110 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQV----ESVQLKVNIARK 110 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBC----SSCBCEEEECCS
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEE----CCeEEEEEEeCC
Confidence 7889999999999999999987765443 468888887654
No 151
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.95 E-value=0.072 Score=42.43 Aligned_cols=41 Identities=5% Similarity=-0.048 Sum_probs=31.8
Q ss_pred CCceeeeccCCHHHHHHHHHccCCce-eecCCCCceEeecCc
Q psy7437 17 KNEGIIEFTRKPAAAQALKRCQDGVF-FLTQSLKPVIVEPLD 57 (279)
Q Consensus 17 tGeGiVEFa~Kp~A~kAL~rc~eg~F-lLTtsprPviVEp~e 57 (279)
.|.|+|+|+....|.+|+...+..-+ -+....+|+.|....
T Consensus 63 rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 63 KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 104 (114)
T ss_dssp CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEES
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecc
Confidence 47999999999999999999887765 222337788886653
No 152
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=92.86 E-value=0.093 Score=44.63 Aligned_cols=49 Identities=22% Similarity=0.129 Sum_probs=35.0
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
+|....|+.|..| +.|.|+|+|+....|.+||. . .|..| ..+||.|.+.
T Consensus 67 ~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~-~-~~~~~---~g~~i~v~~~ 115 (292)
T 2ghp_A 67 PIIHVDVADSLKK-NFRFARIEFARYDGALAAIT-K-THKVV---GQNEIIVSHL 115 (292)
T ss_dssp CEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHT-T-TTCEE---TTEECEEEEC
T ss_pred CeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHH-h-CCcEe---CCcEEEEEEC
Confidence 4566666677665 68999999999999999995 3 55544 3355555543
No 153
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=92.73 E-value=0.096 Score=37.58 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=31.2
Q ss_pred CCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 15 NSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 15 rstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
++.|.|+|+|...-.|.+|+..++...| ..+++.|++.
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~----~g~~l~V~~a 75 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSF----RGKDLIVQLQ 75 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEE----TTEEEEEEEC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeE----CCcEEEEEEc
Confidence 8899999999999999999997764433 3678888765
No 154
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.55 E-value=0.09 Score=41.24 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=34.8
Q ss_pred cceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccC-CceeecCCCCceEeecCc
Q psy7437 3 IERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQD-GVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 3 VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~e-g~FlLTtsprPviVEp~e 57 (279)
|..+.|+.| .|.|+|+|+...+|.+|+..+.. |.-| ..||+.|..-.
T Consensus 43 V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l---~Gr~l~V~~A~ 90 (105)
T 1sjq_A 43 VTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVL---RGQPIYIQFSN 90 (105)
T ss_dssp EEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEE---TTEECCBCCCS
T ss_pred EEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceE---CCEEEEEEEcC
Confidence 555555543 58999999999999999998764 4444 35788887754
No 155
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=92.53 E-value=0.11 Score=37.83 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=31.3
Q ss_pred CCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 16 SKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 16 stGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+.|.|+|+|....+|.+||..++...|. -+|+.|++...
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~a~~ 82 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNF----GKKLILEVSSS 82 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCB----TTTBCEEEEEC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeC----CcEEEEEEcCc
Confidence 4799999999999999999987665443 67888877643
No 156
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.52 E-value=0.16 Score=37.75 Aligned_cols=47 Identities=17% Similarity=0.077 Sum_probs=35.0
Q ss_pred cceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 3 IERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 3 VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
|....|+.| .|.|+|+|....+|.+||..++.. .| .-+++.|.+...
T Consensus 52 i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~-~~---~g~~l~v~~a~~ 98 (109)
T 1x4g_A 52 IMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGT-TI---EGHVVKCYWGKE 98 (109)
T ss_dssp EEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTC-EE---TTEECEEECCCC
T ss_pred eEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCC-EE---CCcEEEEEecCC
Confidence 555555554 689999999999999999987553 33 257888887654
No 157
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.50 E-value=0.088 Score=36.96 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=29.7
Q ss_pred CCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeec
Q psy7437 16 SKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEP 55 (279)
Q Consensus 16 stGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp 55 (279)
+.|.|+|+|....+|.+|+..+..|..+- -+|+.|++
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l~~~~~~~---g~~l~v~~ 83 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKSFNKLIVN---GRRLNVKW 83 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTTTTTCEET---TEECCEEE
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCeeEC---CCEEEEEe
Confidence 46899999999999999999886676653 36777664
No 158
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=92.21 E-value=0.079 Score=40.29 Aligned_cols=35 Identities=29% Similarity=0.482 Sum_probs=27.2
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCce
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVF 42 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~F 42 (279)
+|..+.|+.| |.|+|+|+....|.+||..++...|
T Consensus 42 ~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~ 76 (115)
T 3beg_B 42 DVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKF 76 (115)
T ss_dssp CEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3555556555 9999999999999999998765433
No 159
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=92.13 E-value=0.16 Score=38.32 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=30.5
Q ss_pred CCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 17 KNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 17 tGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
.|.|+|+|.....|.+|+..++...| .-+++.|....
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~----~g~~l~V~~a~ 101 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSF----ANQPLEVVYSK 101 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEE----TTEECEEESCS
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEE----CCeEEEEEEec
Confidence 68999999999999999998766554 46788887754
No 160
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=91.85 E-value=0.13 Score=40.57 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=33.7
Q ss_pred CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccc
Q psy7437 14 GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVD 60 (279)
Q Consensus 14 GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~D 60 (279)
|++.|.|+|+|+..-.|.+|| .+ .|..| ..+|+.|.+.....
T Consensus 48 ~~~~g~afV~F~~~~~A~~Al-~l-~g~~~---~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 48 NQDKNFAFLEFRSVDETTQAM-AF-DGIIF---QGQSLKIRRPHDYQ 89 (198)
T ss_dssp ETTTTEEEEEESCSHHHHHHG-GG-TTEEE---TTEEEEEECCCCCC
T ss_pred cCCCCEEEEEeCCHHHHHHHH-Hh-cCCEE---cCceEEEeCCCCCC
Confidence 889999999999999999999 44 56655 46788888765543
No 161
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=91.83 E-value=0.14 Score=37.28 Aligned_cols=38 Identities=13% Similarity=0.036 Sum_probs=28.9
Q ss_pred CCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 15 NSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 15 rstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
++.|.|+|+|....+|.+|+..++. ..| .-+++.|.+.
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g-~~~---~g~~l~V~~a 98 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALAN-FPF---QGRNLRTGWG 98 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTT-CEE---TTEECCCCBC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCC-CeE---CCeEEEEEec
Confidence 6889999999999999999997764 333 2456666543
No 162
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=91.80 E-value=0.3 Score=38.95 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=35.0
Q ss_pred cceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 3 IERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 3 VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
|....|+.|. .|.|+|+|.....|.+||..++...| .-+|+.|.+...
T Consensus 31 i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~----~g~~l~v~~a~~ 78 (198)
T 1qm9_A 31 VQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKL----HGKPIRITLSKH 78 (198)
T ss_dssp CSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCC----SSCCCEEEECCC
T ss_pred EEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCee----cCeEEEEEEecC
Confidence 4444455543 67899999999999999997765443 358888876653
No 163
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=91.73 E-value=0.19 Score=42.53 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=34.2
Q ss_pred CCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 13 RGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 13 RGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.|++.|.|+|+|.....|.+||..++. ..| .-+++.|.+...
T Consensus 48 ~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~---~g~~l~v~~a~~ 89 (282)
T 3pgw_A 48 SLKMRGQAFVIFKEVSSATNALRSMQG-FPF---YDKPMRIQYAKT 89 (282)
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcC-Cee---CCcEEEEEEecc
Confidence 789999999999999999999987754 333 238888887644
No 164
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.54 E-value=0.2 Score=39.57 Aligned_cols=46 Identities=20% Similarity=0.388 Sum_probs=33.6
Q ss_pred cceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHcc-CCceeecCCCCceEeecC
Q psy7437 3 IERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQ-DGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 3 VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~-eg~FlLTtsprPviVEp~ 56 (279)
|..+.|+ ++.|.|+|+|+...+|.+|+..++ .+..| .-||+.|..-
T Consensus 53 V~~v~i~-----~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l---~Gr~l~V~~a 99 (112)
T 1x4f_A 53 IKNYILM-----RMKSQAFIEMETREDAMAMVDHCLKKALWF---QGRCVKVDLS 99 (112)
T ss_dssp CSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHHHSCCCS---SSSCCEEEEE
T ss_pred EEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhccCCceE---CCEEEEEEEC
Confidence 5555443 457999999999999999999875 34333 3578887764
No 165
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.16 E-value=0.19 Score=38.05 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=31.2
Q ss_pred CCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 15 NSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 15 rstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
++.|.|+|+|.....|.+||..++...|. .+|+.|+...
T Consensus 44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a~ 82 (111)
T 1whx_A 44 EGGITAIVEFLEPLEARKAFRHLAYSKFH----HVPLYLEWAP 82 (111)
T ss_dssp SSSSCEEEEESCHHHHHHHHHHHTTCBSS----SSBCEEEEEE
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEEC----CeEEEEEECC
Confidence 36688999999999999999988755442 6788887653
No 166
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.15 E-value=0.32 Score=35.33 Aligned_cols=40 Identities=18% Similarity=0.049 Sum_probs=31.2
Q ss_pred CCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 15 NSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 15 rstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
++.|.|+|+|...-.|.+|+..++...| .-+++.|.+...
T Consensus 49 ~~kg~afV~f~~~~~a~~a~~~l~g~~~----~g~~l~v~~a~~ 88 (99)
T 2cpj_A 49 KDKGFGFIRLETRTLAEIAKVELDNMPL----RGKQLRVRFACH 88 (99)
T ss_dssp TTTTEEEEECSSSHHHHHHHHHHTTCCB----TTBCCEEEESSC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCEe----CCceEEEEEcCC
Confidence 4479999999999999999997765443 247888877644
No 167
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.01 E-value=0.16 Score=40.44 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=35.1
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccC-CceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQD-GVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~e-g~FlLTtsprPviVEp~e 57 (279)
.|..+.|+.| .|.|+|+|....+|.+|+..+.. |..| .-+||.|....
T Consensus 57 ~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l---~Gr~l~V~~a~ 105 (119)
T 2ad9_A 57 KVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVL---RGQPIYIQFSN 105 (119)
T ss_dssp CCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCB---TTBCCEEEECS
T ss_pred CEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceE---CCeEEEEEEcc
Confidence 3566665544 58999999999999999998764 3333 35788887654
No 168
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.95 E-value=0.41 Score=34.15 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=31.3
Q ss_pred CCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccc
Q psy7437 17 KNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVD 60 (279)
Q Consensus 17 tGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~D 60 (279)
.|.|+|+|.....|.+||..++...| .-+++.|++.....
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKL----HGVNINVEASKNKS 81 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBC----SSCBCEEECSSCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCcc----CCcEEEEEECCCCC
Confidence 58999999999999999998765332 36888888875533
No 169
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.76 E-value=0.18 Score=38.47 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=29.8
Q ss_pred CCceeeeccCCHHHHHHHHHcc-CCceeecCCCCceEeecCc
Q psy7437 17 KNEGIIEFTRKPAAAQALKRCQ-DGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 17 tGeGiVEFa~Kp~A~kAL~rc~-eg~FlLTtsprPviVEp~e 57 (279)
.|.|+|+|+...+|.+|+..+. .+..| .-+|+.|....
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~---~Gr~l~V~~a~ 89 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHL---RNQPIYIQYSN 89 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEE---TTEECEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceE---CCcEEEEEEcC
Confidence 5899999999999999999875 34444 35788887654
No 170
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=90.33 E-value=0.2 Score=44.55 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=39.9
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecC--------CCCceEeecCcc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQ--------SLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTt--------sprPviVEp~e~ 58 (279)
+|+...|+ ++.|.|+|.|....+|.+|+..+....|++.+ .-++|.|.+...
T Consensus 169 ~I~~v~v~-----~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 169 DIDRIRYV-----ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp CEEEEEEE-----GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred CEEEEEEE-----CCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccC
Confidence 46666555 35799999999999999999999887776644 457888887643
No 171
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=90.17 E-value=0.26 Score=36.32 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=29.3
Q ss_pred CCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 16 SKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 16 stGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
+.|.|+|+|....+|.+||..++...| ..+++.|+..
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~----~g~~l~V~~a 92 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMN----FGKKLILEVS 92 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEE----TTEECEEEEC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEE----CCEEEEEEec
Confidence 479999999999999999998765433 2577777764
No 172
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.03 E-value=0.46 Score=33.88 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=30.2
Q ss_pred CCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 17 KNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 17 tGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.|.|+|+|.....|.+||..++...| ..+++.|.+...
T Consensus 43 ~~~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a~~ 80 (90)
T 2dnp_A 43 KDYAFVHMEKEADAKAAIAQLNGKEV----KGKRINVELSTK 80 (90)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCEE----TTEECEEEESCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEE----CCcEEEEEECCC
Confidence 45999999999999999998765333 368888887654
No 173
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=89.92 E-value=0.27 Score=36.51 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=30.5
Q ss_pred CCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 16 SKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 16 stGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+.|.|+|+|.....|.+||..+....| .-++|.|++..
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~V~~a~ 98 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVL----AGQTLDINMAG 98 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEE----TTEECCEEESC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEE----CCeEEEEEECC
Confidence 689999999999999999987765443 35788887754
No 174
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=89.50 E-value=0.53 Score=39.85 Aligned_cols=52 Identities=8% Similarity=0.195 Sum_probs=37.5
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
+|.+.+|+ ++ ++.|.|+|+|.....|.+|++.+....|+ ...+++.|+.-..
T Consensus 72 ~V~~V~i~-~k--~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~--g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 72 TVLKIITF-TK--NNQFQALLQYADPVSAQHAKLSLDGQNIY--NACCTLRIDFSKL 123 (164)
T ss_dssp CEEEEEEE-ES--SSCEEEEEEESCHHHHHHHHHHSTTBCSS--SSCSCEEEEECSS
T ss_pred CEEEEEEE-eC--CCCCEEEEEECCHHHHHHHHHHhCCCEec--CCCcEEEEEEecC
Confidence 35665554 33 35689999999999999999988765554 3347888876654
No 175
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.49 E-value=0.39 Score=34.69 Aligned_cols=40 Identities=13% Similarity=-0.004 Sum_probs=30.2
Q ss_pred CCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 17 KNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 17 tGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.|.|+|+|+....|.+|+..++...|. ..-+++.|.....
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~--~~g~~l~V~~a~~ 92 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLG--GPDRRLRVDFAKS 92 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCS--SSSCBCEEEECCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeC--CCCcEEEEEECCC
Confidence 679999999999999999977654331 2257888876543
No 176
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=89.46 E-value=0.28 Score=38.23 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=30.6
Q ss_pred CCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 15 NSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 15 rstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
.|.|.|+|||+....|.+|++..+ ||=| .-||+.|...
T Consensus 41 ~~kGfaFVey~~~~eA~~Ai~~Ln-~~~l---~gr~I~V~~A 78 (89)
T 2wbr_A 41 LNQGIALCKYTTREEANKAQMALN-NCVL---ANTTIFAESP 78 (89)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHT-TEEE---TTEEEEEECC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhc-CCEE---CCcEEEEEEC
Confidence 389999999999999999999776 5555 3567777655
No 177
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.45 E-value=0.26 Score=37.59 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=29.6
Q ss_pred CCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 17 KNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 17 tGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.|.|+|+|.....|.+|+..+...... -.-+|+.|.....
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~--i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 51 KRQALVEFENIDSAKECVTFAADVPVY--IAGQQAFFNYSTS 90 (104)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCB--SSSSBCEEEECSS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCce--ECCEEEEEEEccC
Confidence 589999999999999999977533211 2367888877643
No 178
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.45 E-value=0.26 Score=37.98 Aligned_cols=46 Identities=26% Similarity=0.261 Sum_probs=32.6
Q ss_pred cceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCC-ceeecCCCCceEeecC
Q psy7437 3 IERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDG-VFFLTQSLKPVIVEPL 56 (279)
Q Consensus 3 VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg-~FlLTtsprPviVEp~ 56 (279)
|..+.|+. ++ |.|+|+|+....|.+|+..++.. .-| .-||+.|..-
T Consensus 43 V~~v~i~~-~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~---~Gr~l~V~~a 89 (102)
T 1x4d_A 43 ISNHLILN-KI----NEAFIEMATTEDAQAAVDYYTTTPALV---FGKPVRVHLS 89 (102)
T ss_dssp EEEEEECS-SS----SCEEEEESSHHHHHHHHHHHHHSCCEE---TTEECEEEEE
T ss_pred EEEEEEEc-CC----CEEEEEECCHHHHHHHHHHHcCCCceE---CCcEEEEEEC
Confidence 44554443 33 78999999999999999987643 222 3678888654
No 179
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=89.26 E-value=0.3 Score=37.59 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=30.3
Q ss_pred CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 14 GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 14 GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
|++.|.|+|+|+....|.+|| . -.|..| ..+|+.|.+-.
T Consensus 48 ~~~~g~afV~f~~~~~A~~A~-~-~~~~~~---~g~~i~v~~~~ 86 (172)
T 2g4b_A 48 NQDKNFAFLEFRSVDETTQAM-A-FDGIIF---QGQSLKIRRPH 86 (172)
T ss_dssp ETTTTEEEEEESSHHHHHHHG-G-GTTCEE---TTEECEEECCS
T ss_pred cCCCCEEEEEeCCHHHHHHHH-H-hCCcEe---cCceeeecCCc
Confidence 788999999999999999999 4 455554 45677776543
No 180
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=89.10 E-value=0.4 Score=39.93 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=35.6
Q ss_pred cceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 3 IERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 3 VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
|....|+.|. .|.|+|+|.....|.+||..++...| .-+++.|.+...
T Consensus 62 i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~----~g~~l~v~~a~~ 109 (229)
T 2adc_A 62 VQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKL----HGKPIRITLSKH 109 (229)
T ss_dssp EEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBC----SSSBCEEECCSC
T ss_pred eEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeE----CCeEEEEEEecC
Confidence 5555555554 67899999999999999997765443 358888877653
No 181
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=89.03 E-value=0.32 Score=34.02 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=25.8
Q ss_pred CCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEee
Q psy7437 15 NSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVE 54 (279)
Q Consensus 15 rstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVE 54 (279)
++.|.|+|+|+..-+|.+|| .++ |..| .-+++.|+
T Consensus 51 ~~kg~afV~f~~~~~a~~A~-~l~-g~~~---~g~~l~V~ 85 (87)
T 2hzc_A 51 QDKNFAFLEFRSVDETTQAM-AFD-GIIF---QGQSLKIR 85 (87)
T ss_dssp SSSSEEEEEESSHHHHHHHG-GGT-TCEE---TTEECEEE
T ss_pred CCCcEEEEEcCCHHHHHHHH-hcC-CCEE---CCeEEEEe
Confidence 45799999999999999999 554 4443 24555553
No 182
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=88.97 E-value=0.46 Score=34.83 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=31.1
Q ss_pred CCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 17 KNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 17 tGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
.|.|+|+|....+|.+||..++... | .-+++.|.+....
T Consensus 45 ~~~afV~f~~~~~a~~A~~~l~g~~-~---~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 45 KDYAFIHFDERDGAVKAMEEMNGKD-L---EGENIEIVFAKPP 83 (103)
T ss_dssp SSCEEEEESSHHHHHHHHHHHTTEE-E---TTEEEEEEECCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHCCCc-c---CCCEEEEEEcCCC
Confidence 5699999999999999999876543 3 2688999887553
No 183
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.95 E-value=0.34 Score=38.41 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=29.8
Q ss_pred CceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 18 NEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 18 GeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
|-|+|.|....+|.+|++....-.|+ -||+.|.-.
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~----gr~i~v~~A 81 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVF----GNRIIVSFT 81 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSS----SSCCEEESS
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccC----CceEEEEec
Confidence 99999999999999999998776666 788877543
No 184
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=88.60 E-value=0.3 Score=40.91 Aligned_cols=48 Identities=15% Similarity=0.231 Sum_probs=35.1
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
.|.++.|+.| +.|.|+|+|....+|.+||...+...|. -+|+.|.+-.
T Consensus 31 ~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~----g~~l~v~~s~ 78 (205)
T 3tyt_A 31 NVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMF----GQKMNVCVSK 78 (205)
T ss_dssp CEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEET----TEECEEEECS
T ss_pred CeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEEC----CceEEEEEcc
Confidence 3555555544 3699999999999999999988754432 4777777653
No 185
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.49 E-value=0.41 Score=34.22 Aligned_cols=41 Identities=12% Similarity=0.030 Sum_probs=32.4
Q ss_pred CCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 15 NSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 15 rstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.+.|.|+|+|...-.|.+||..++....| .-+++.|.+...
T Consensus 42 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~---~g~~l~v~~a~~ 82 (93)
T 2cqh_A 42 LKSGYAFVDYPDQNWAIRAIETLSGKVEL---HGKIMEVDYSVS 82 (93)
T ss_dssp EETTEEEECCSCHHHHHHHHHHHTTTCEE---TTEECEEEECCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHccCCeeE---CCEEEEEEEccC
Confidence 46899999999999999999977662333 358888887654
No 186
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=88.35 E-value=0.62 Score=37.22 Aligned_cols=49 Identities=16% Similarity=0.250 Sum_probs=34.5
Q ss_pred CcceeEEEeCCCCCCCCc-eeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDRGNSKNE-GIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdRGrstGe-GiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
.|.+++| ++ + +|. |+|+|+....|.+|++......|. ...+|+.|.-..
T Consensus 51 ~V~~v~i-~~-~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~--g~~~~l~V~~Ak 100 (124)
T 2e5i_A 51 KVQRIVI-FK-R---NGIQAMVEFESVLCAQKAKAALNGADIY--AGCCTLKIEYAR 100 (124)
T ss_dssp CEEEEEE-EE-S---SSEEEEEEESSHHHHHHHHHHHTTCCCB--TTBSEEEEECCS
T ss_pred CEEEEEE-Ee-C---CCCEEEEEECCHHHHHHHHHHhCCCEec--CCCeEEEEEEec
Confidence 3556555 44 2 395 999999999999999987665554 334677776543
No 187
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.79 E-value=0.38 Score=34.18 Aligned_cols=48 Identities=8% Similarity=0.015 Sum_probs=31.4
Q ss_pred cceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccc
Q psy7437 3 IERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVD 60 (279)
Q Consensus 3 VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~D 60 (279)
|..+.|+.| +.|.|+|+|....+|.+|+. . . +.-..++|.|.......
T Consensus 32 i~~v~i~~~----~~g~afV~f~~~~~a~~~~~---~-~--~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 32 VMDVFIPKP----FRAFAFVTFADDQIAQSLCG---E-D--LIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCEEECCSS----CCSCCEEECSCHHHHHHTTT---C-E--EEETTEEEEEECCCCCC
T ss_pred eeEEEEecC----CCCEEEEEECCHHHHHHHhc---C-C--ceeCCEEEEEEecCCCC
Confidence 444444443 78999999999999876532 2 2 22345788887765443
No 188
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=87.67 E-value=0.29 Score=35.70 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=30.1
Q ss_pred CcceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|..+.|+.| |.|.|+|+|+...+|.++. |. -+.-..++|.|....
T Consensus 37 ~i~~v~i~~~----srGfaFV~F~~~~~A~~~~-----~~-~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 37 EVVDVFIPKP----FRAFAFVTFADDKVAQSLC-----GE-DLIIKGISVHISNAE 82 (89)
T ss_dssp CEEEEECCSS----CCSEEEEEESCHHHHHHHT-----TC-EEEETTEEEEEEECC
T ss_pred CEEEEEEeeC----CCCEEEEEECCHHHHHHHc-----CC-CcccCCEEEEEEEcC
Confidence 3555555554 7899999999988887432 22 223356777777654
No 189
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.43 E-value=0.55 Score=34.05 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=32.1
Q ss_pred CCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCccc
Q psy7437 15 NSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLV 59 (279)
Q Consensus 15 rstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~ 59 (279)
.+.|.|+|+|....+|.+||..++... | ..+++.|......
T Consensus 49 ~~~g~afV~f~~~~~A~~A~~~l~g~~-~---~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 49 KIRDYAFVHFSNREDAVEAMKALNGKV-L---DGSPIEVTLAKPV 89 (99)
T ss_dssp ECSSEEEEEESSHHHHHHHHHHHSSEE-E---TTEEEEEECCCCC
T ss_pred EeCCeEEEEeCCHHHHHHHHHHhCCCE-e---CCcEEEEEECCCC
Confidence 357899999999999999999776543 3 2688998877543
No 190
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.77 E-value=0.73 Score=37.25 Aligned_cols=43 Identities=33% Similarity=0.373 Sum_probs=34.6
Q ss_pred CCCCCCCceeeeccC-CHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 12 DRGNSKNEGIIEFTR-KPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 12 dRGrstGeGiVEFa~-Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.+|..| |+|+|.. -++|.+|++..++|-.-|-. ..|.|++++-
T Consensus 52 ~~g~~t--gfVrf~~~~~~A~~av~~ln~~~~~i~g--~~~~~evL~G 95 (121)
T 1owx_A 52 VRGAKE--GIILFKEKAKEALGKAKDANNGNLQLRN--KEVTWEVLEG 95 (121)
T ss_dssp CTTCSE--EEEEESSCHHHHHHHHHHTTTSCBCTTS--SSEEEEECCH
T ss_pred ecCCCE--EEEEECCChHHHHHHHHHhhcCCcEEeC--cEEEEEECCC
Confidence 346665 9999999 58999999998888877655 6789999965
No 191
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=86.49 E-value=0.3 Score=38.16 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=24.8
Q ss_pred EEeCCCCCCCCceeeeccCCHHHHHHHHHcc
Q psy7437 8 VLVDDRGNSKNEGIIEFTRKPAAAQALKRCQ 38 (279)
Q Consensus 8 ViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~ 38 (279)
||.|-. ++.|.|+|+|.....|.+||...+
T Consensus 5 l~ln~~-~~~G~~fV~f~~~~~A~~al~~~~ 34 (158)
T 2kn4_A 5 LILNGK-TLKGETTTEAVDAATAEKVFKQYA 34 (158)
T ss_dssp EEEECS-SCEEEEEEECSSHHHHHHHHHHHH
T ss_pred EEecCc-cccchhHHHHHHHHhHHHHHHhhc
Confidence 445544 899999999999999999997654
No 192
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=84.42 E-value=0.91 Score=36.87 Aligned_cols=50 Identities=4% Similarity=0.135 Sum_probs=35.6
Q ss_pred CcceeEEEeCCCCCCCCc-eeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCc
Q psy7437 2 NIERAVVLVDDRGNSKNE-GIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLD 57 (279)
Q Consensus 2 ~VERAVViVDdRGrstGe-GiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e 57 (279)
+|.+++++.+ +.|. |+|+|.....|.+|++..+...|. ...+++-|+--.
T Consensus 54 ~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~--g~~~~LrI~~ak 104 (130)
T 3zzy_A 54 TVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIY--NACCTLRIDFSK 104 (130)
T ss_dssp CEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEE--TTEEEEEEEECS
T ss_pred CEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeec--CCCcEEEEEecC
Confidence 4566655432 3465 999999999999999988776665 345677776543
No 193
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.65 E-value=1.2 Score=31.90 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=30.7
Q ss_pred EeCCC-CCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 9 LVDDR-GNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 9 iVDdR-GrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
++|.. |+ .|+|+|....+|.+||. + .|..| .-++|.|.+...
T Consensus 39 ~~~~~~g~---~afV~f~~~~~a~~ai~-l-~g~~~---~g~~l~V~~a~~ 81 (94)
T 2e5g_A 39 VMDKDKGV---FAIVEMGDVGAREAVLS-Q-SQHSL---GGHRLRVRPREQ 81 (94)
T ss_dssp EECSSSCC---EEEEEESSHHHHHHHHT-C-SCCEE---TTEECCCBCSCC
T ss_pred EEcCCCCc---EEEEEECCHHHHHHHHh-c-CCeEE---CCEEEEEEECCc
Confidence 55543 44 99999999999999999 5 45444 367888876543
No 194
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.57 E-value=1.7 Score=30.89 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=29.9
Q ss_pred CCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcc
Q psy7437 17 KNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDL 58 (279)
Q Consensus 17 tGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~ 58 (279)
.|.|+|+|.....|.+|+..++...| .-+++.|.+...
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~V~~a~~ 81 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNTEF----QGKRMHVQLSTS 81 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTEEE----TTEEEEEEESSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCee----CCcEEEEEEccC
Confidence 44999999999999999997765443 358888887644
No 195
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=70.87 E-value=2.9 Score=38.92 Aligned_cols=27 Identities=7% Similarity=0.063 Sum_probs=22.9
Q ss_pred CCCceeeeccCCHHHHHHHHHccCCce
Q psy7437 16 SKNEGIIEFTRKPAAAQALKRCQDGVF 42 (279)
Q Consensus 16 stGeGiVEFa~Kp~A~kAL~rc~eg~F 42 (279)
+.|.|+|+|+.+..|.+|++..+..-+
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 348999999999999999998876544
No 196
>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}
Probab=58.38 E-value=9.1 Score=30.21 Aligned_cols=43 Identities=35% Similarity=0.552 Sum_probs=32.5
Q ss_pred eeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 5 RAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 5 RAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
..||-|+|||--.+-.|++.+ ++|.++|.....| --||-|+.+
T Consensus 52 sVvVrVnDRGP~~~griIDLS--~aAa~~Lg~~~~G-------~~~V~ve~~ 94 (95)
T 4avr_A 52 SVVVRINDRGPFRRGRIIDVS--RKAAEGLGMIRSG-------VAPVRIESL 94 (95)
T ss_dssp EEEEEEEECCCCSTTEEEEEC--HHHHHHHTCTTTS-------CEEEEEEEC
T ss_pred EEEEEEccCCCCCCCCEEEeC--HHHHHHhCCcCCC-------EEEEEEEEe
Confidence 358999999999999999998 5677777755555 446666655
No 197
>1xr0_B FGFR signalling adaptor SNT-1; phosphotyrosine binding domain, PTB, TRK, NPXPY motif,, signaling protein/growth factor receptor complex; NMR {Homo sapiens} SCOP: b.55.1.2
Probab=43.09 E-value=29 Score=28.78 Aligned_cols=79 Identities=28% Similarity=0.406 Sum_probs=50.2
Q ss_pred EEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecCcccccccCchhhhhcccCchhhhhhccCCC
Q psy7437 7 VVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPLDLVDDEEGLSERTVSKKSSDYFKQRSIGPR 86 (279)
Q Consensus 7 VViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~e~~DdeDGLpEK~l~~k~~~f~kERE~gPR 86 (279)
|++||+.|+-.|.|+.+.. +.++.|.++.+|.+.=|+...=- =|.. ...| --|.|.|
T Consensus 16 V~~~~~~~~e~g~~~L~lt-------------~~~L~L~~~~~~~~~Wp~~~LRr-YG~d-------~~~F--sFEaGRR 72 (129)
T 1xr0_B 16 VINVDDDGNELGSGIMELT-------------DTELILYTRKRDSVKWHYLCLRR-YGYD-------SNLF--SFESGRR 72 (129)
T ss_dssp EEEECSSCCCCCCEEEEEC-------------SSCEEEEETTTEEEEECSTTEEE-EEEC-------SSEE--EEEECSC
T ss_pred EEEeCCCCCcceeEEEEEe-------------cCEEEEEeCCCCeeEcchHHhhh-cCcc-------CCEE--EEEcCCC
Confidence 8899999999999998654 56677777777777777753211 1111 1122 2366777
Q ss_pred CCC-CCCchhhhhhhHHHHHHHHH
Q psy7437 87 FAT-IGSFEFEYGTRWKQLYELYK 109 (279)
Q Consensus 87 fa~-~gsFE~EygqRWK~L~e~eK 109 (279)
=.. +|.|-|.. .+..+|+.+..
T Consensus 73 C~tGeGiF~F~t-~~~~~If~~l~ 95 (129)
T 1xr0_B 73 CQTGQGIFAFKC-ARAEELFNMLQ 95 (129)
T ss_dssp STTCSEEEEEEC-SCHHHHHHHHH
T ss_pred CCCCCcEEEEEc-CCHHHHHHHHH
Confidence 664 78887754 34556665554
No 198
>1l1c_A Transcription antiterminator LICT; protein RNA complex, antiterminator complex, RNA hairpin, transcription/RNA complex; NMR {Bacillus subtilis} SCOP: b.35.2.1
Probab=37.31 E-value=13 Score=26.48 Aligned_cols=39 Identities=21% Similarity=0.418 Sum_probs=26.0
Q ss_pred eEEEeCCCCCC---CCceeeeccCCHHHHHHHHHccCCceeecC
Q psy7437 6 AVVLVDDRGNS---KNEGIIEFTRKPAAAQALKRCQDGVFFLTQ 46 (279)
Q Consensus 6 AVViVDdRGrs---tGeGiVEFa~Kp~A~kAL~rc~eg~FlLTt 46 (279)
||+++|+.|+- +|+|| -|.+||...-... --++.|.|..
T Consensus 11 vvl~~~~~~~E~Iv~GkGI-GF~kk~Gd~id~~-~ieK~F~l~~ 52 (55)
T 1l1c_A 11 VISVVNEQGKELVVMGRGL-AFQKKSGDDVDEA-RIEKVFTLDN 52 (55)
T ss_dssp EEEEECTTSCEEEEECSSS-STTCCTTSCCCGG-GCSEEEEEEC
T ss_pred EEEEEcCCCCEEEEEeccc-eeCCcCCCccChH-HccEEEEecC
Confidence 45557877774 59999 8999998543332 2467777643
No 199
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=37.27 E-value=89 Score=25.32 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy7437 98 GTRWKQLYELYKQKEEALQKELKLEEEKLEAQMEFARYENETEI 141 (279)
Q Consensus 98 gqRWK~L~e~eKqqrE~l~reikee~EKLEaEME~a~~ehq~~l 141 (279)
-.-|+.|-.+..+-.++|.+.+.+.. .||..+...+.+|.+.+
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~-~Le~~w~~k~E~~k~qV 47 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQ-ELEDFIKQSSEDSSHQI 47 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 35799999999999999999988854 48888887777776654
No 200
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.21 E-value=9.6 Score=29.74 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=24.9
Q ss_pred CceeeeccCCHHHHHHHHHccCCceeecCCCCceEeecC
Q psy7437 18 NEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVEPL 56 (279)
Q Consensus 18 GeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVEp~ 56 (279)
+.|+|+|...-+|.+||. -+|.-+. -|.+.|...
T Consensus 50 d~~fVtF~d~~sAlaAi~--mnG~~v~---Gr~LkV~lk 83 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS--LNGKELL---NRTITIALK 83 (91)
T ss_dssp SSEEEEESSHHHHHHGGG--GTTCEET---TEEEEEEEC
T ss_pred CCEEEEECChHHHHHHHh--cCCeEeC---CeEEEEEeC
Confidence 459999999999999998 5676653 455555443
No 201
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=34.18 E-value=18 Score=27.96 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.6
Q ss_pred CCCCCceeeeccCCHHHHHHHHHc
Q psy7437 14 GNSKNEGIIEFTRKPAAAQALKRC 37 (279)
Q Consensus 14 GrstGeGiVEFa~Kp~A~kAL~rc 37 (279)
.+..|.+||||+....|.+||...
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~ 33 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQY 33 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHH
T ss_pred ccccccceeeecCHHHHHHHHHHH
Confidence 367899999999999999999877
No 202
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.65 E-value=38 Score=26.62 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=22.9
Q ss_pred eeeeccCCHHHHHHHHHccCCceeecCCCCceEee
Q psy7437 20 GIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVIVE 54 (279)
Q Consensus 20 GiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPviVE 54 (279)
|+|+|...-+|.+||. -+|..+. -|++.|.
T Consensus 61 ~fVtF~d~~sAl~AI~--ldG~~v~---Gr~L~V~ 90 (95)
T 1ufw_A 61 MLVTFADSHSALSVLD--VDGMKVK---GRAVKIS 90 (95)
T ss_dssp EEEECSCSHHHHHHHH--GGGSEET---TEEEEEE
T ss_pred EEEEEcChHHHHHHHh--cCCeeeC---CeEEEEe
Confidence 9999999999999998 5666663 3444444
No 203
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=29.29 E-value=3.4e+02 Score=26.89 Aligned_cols=72 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7437 102 KQLYELYKQKEEALQKELKLEEEKLEAQMEFARYENETEILRERECRFVEEALQKELKLEEEKLEAQMEFARYE 175 (279)
Q Consensus 102 K~L~e~eKqqrE~l~reikee~EKLEaEME~a~~ehq~~lLre~l~r~~~e~~~~~~~~~~~kle~qmE~a~~e 175 (279)
+++..+.++|.......++.-.+|+|.|++....+++..|=.. +.-++.+.++--+.+-..|..|+..++..
T Consensus 511 ~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 511 RKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALK--LQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 204
>3rio_A PTSGHI operon antiterminator; twisted beta sheet, four helix bundle, transcriptional antitermination, transcription; 1.99A {Bacillus subtilis}
Probab=27.41 E-value=14 Score=30.68 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=23.2
Q ss_pred EEEeCCCCC---CCCceeeeccCCHHHHHHHHHccCCceeecCC
Q psy7437 7 VVLVDDRGN---SKNEGIIEFTRKPAAAQALKRCQDGVFFLTQS 47 (279)
Q Consensus 7 VViVDdRGr---stGeGiVEFa~Kp~A~kAL~rc~eg~FlLTts 47 (279)
|++.|+.|+ -+|+|| -|.+||+-.-.-. --++.|+|..+
T Consensus 26 v~~~~~~~~E~i~~G~Gi-gf~kk~g~~i~~~-~iek~f~l~~~ 67 (180)
T 3rio_A 26 LIASHHKYSEVVLIGKGI-GFGKKQDDVIEDK-GYDKMFILKDE 67 (180)
T ss_dssp EEEECGGGCEEEEECTTT-TTTCCTTCEEECC-SSSCCEEECSH
T ss_pred EEEEcCCCCEEEEEeecc-eECCCCCeeeCcc-cceEEEEcCCh
Confidence 444466675 479999 8999997421111 12566766543
No 205
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1
Probab=27.09 E-value=16 Score=23.72 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=9.6
Q ss_pred CCCcceeecccc
Q psy7437 265 TEGPFICECNNK 276 (279)
Q Consensus 265 ~~~~~~~~~~~~ 276 (279)
+.|+|.|.|..-
T Consensus 29 ~~Gsy~C~C~~G 40 (53)
T 1apq_A 29 YVGGYFCSCRPG 40 (53)
T ss_dssp ETTEEEEECSTT
T ss_pred CCCCeEEECCCC
Confidence 458999999764
No 206
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=26.71 E-value=7 Score=34.95 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=35.2
Q ss_pred eEEEeCCCCCCC---CceeeeccCCHHHHHHHHHccCCceeecCCCC-------------ceEeecCcccc
Q psy7437 6 AVVLVDDRGNSK---NEGIIEFTRKPAAAQALKRCQDGVFFLTQSLK-------------PVIVEPLDLVD 60 (279)
Q Consensus 6 AVViVDdRGrst---GeGiVEFa~Kp~A~kAL~rc~eg~FlLTtspr-------------PviVEp~e~~D 60 (279)
.+||||.|-... |..|+++=.+-...--.+...-|=|+++++++ ++|||=....|
T Consensus 25 ~~ivvD~RE~~~~~~~~~~~~~L~~~gv~~~~~~L~vGDyi~i~~~~~~~~~~~~~e~vl~~iVERKs~~D 95 (307)
T 2zix_A 25 VLLCVDIGETRGGGHRPELLRELQRLHVTHTVRKLHVGDFVWVAQETNPRDPANPGELVLDHIVERKRLDD 95 (307)
T ss_dssp CCCBCCSSSCCC---CCTTSTTTGGGCCCCCCCCCCSSSBBCCCCCCC----CCCCCCCCSEEECCCCTTT
T ss_pred EEEEEECcccccCcchHHHHHHHHHCCCCeEEEeCCCCCEEEEEecCCCCcccccceeeeeeeeeeeeHHH
Confidence 478999994433 23455443333333334556678899888887 69999886644
No 207
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=23.31 E-value=82 Score=26.53 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=34.3
Q ss_pred EEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCC-CCceEeecCcccccccC
Q psy7437 8 VLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQS-LKPVIVEPLDLVDDEEG 64 (279)
Q Consensus 8 ViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTts-prPviVEp~e~~DdeDG 64 (279)
.+-+...+-.|.|||-.. |+++.+|.-..-...+|+.. ...++|-|....|..+|
T Consensus 10 ~V~~a~~~D~gr~ivrl~--p~~m~~Lgl~~GD~V~I~G~r~t~a~v~~~~~ed~~~g 65 (185)
T 1cz4_A 10 RVAEANSTDPGMSRVRLD--ESSRRLLDAEIGDVVEIEKVRKTVGRVYRARPEDENKG 65 (185)
T ss_dssp EEECCSSCCCCSSEEEEC--HHHHHTTCCCTTCEEEEESSSEEEEEEEECSSTTTTTS
T ss_pred EEecCcccccCCCEEEEC--HHHHHHcCCCCCCEEEEEcCCeEEEEEEEcCcCcCCCC
Confidence 344445677899999986 89999999555555555543 33445555544444444
No 208
>1auu_A SACY; antitermination, RNA binding domain, transcription regulation; NMR {Bacillus subtilis} SCOP: b.35.2.1
Probab=22.21 E-value=30 Score=24.54 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=23.9
Q ss_pred eEEEeCCCCCC---CCceeeeccCCHHHHHHHHHccCCceeecC
Q psy7437 6 AVVLVDDRGNS---KNEGIIEFTRKPAAAQALKRCQDGVFFLTQ 46 (279)
Q Consensus 6 AVViVDdRGrs---tGeGiVEFa~Kp~A~kAL~rc~eg~FlLTt 46 (279)
||+++| .|+- +|+|| -|.+||...-... --++.|.|..
T Consensus 11 vvl~~d-~~~E~Iv~GkGI-GF~kk~Gd~id~~-~ieK~F~l~~ 51 (55)
T 1auu_A 11 AIVVKD-QNEEKILLGAGI-AFNKKKNDIVDPS-KIEKTFIRKD 51 (55)
T ss_dssp EEEEEC-SSSEEEEECTTS-STTCCTTSCCCTT-TCCEEEEECC
T ss_pred EEEEec-CCcEEEEEeccc-eeCCcCCCccChH-HccEEEEccc
Confidence 344467 6664 59998 8999998543222 2356777644
No 209
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=21.49 E-value=45 Score=27.70 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=26.5
Q ss_pred ceeEEEeCCCCCCCCceeeeccCCHHHHHHHHHccCCceeecCCCCceE
Q psy7437 4 ERAVVLVDDRGNSKNEGIIEFTRKPAAAQALKRCQDGVFFLTQSLKPVI 52 (279)
Q Consensus 4 ERAVViVDdRGrstGeGiVEFa~Kp~A~kAL~rc~eg~FlLTtsprPvi 52 (279)
+-|+||+|+.|.|.|--|. =|.|..+= + -|.=..|+-|-|
T Consensus 92 dNA~Vlin~~g~p~GTrI~----GPVarElr----~-~~~KI~SlA~~v 131 (132)
T 1vq8_K 92 DNAAVIVDENEDPRGTELK----GPIAREVA----Q-RFGSVASAATMI 131 (132)
T ss_dssp SCEEEEECTTSCBSSSCBC----SEECHHHH----H-HSHHHHTTCSEE
T ss_pred CceEEEECCCCCEeEEEEE----cCcCHHHH----h-cccHhhhccccc
Confidence 3589999999999999993 35555532 2 354445555544
No 210
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=21.45 E-value=45 Score=27.26 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=16.2
Q ss_pred ceeEEEeCCCCCCCCcee
Q psy7437 4 ERAVVLVDDRGNSKNEGI 21 (279)
Q Consensus 4 ERAVViVDdRGrstGeGi 21 (279)
+-|+||+|+.|.|.|--|
T Consensus 81 dNa~Vlin~~g~p~GTrI 98 (122)
T 1whi_A 81 ENACVIIRDDKSPRGTRI 98 (122)
T ss_dssp SCEEEEECTTSCBSSSCB
T ss_pred CceEEEECCCCCEeeeEE
Confidence 358999999999999988
No 211
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=21.37 E-value=1.2e+02 Score=24.81 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy7437 103 QLYELYKQKEEALQKELKLEEEKLEAQMEFARYENETEIL 142 (279)
Q Consensus 103 ~L~e~eKqqrE~l~reikee~EKLEaEME~a~~ehq~~lL 142 (279)
.|....+++.+.++...+.....|+++|-.|+.+..+-|.
T Consensus 20 ~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~ 59 (118)
T 2y39_A 20 PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIA 59 (118)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678899999999999999999999999988887765
No 212
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.66 E-value=45 Score=27.27 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=16.1
Q ss_pred ceeEEEeCCCCCCCCcee
Q psy7437 4 ERAVVLVDDRGNSKNEGI 21 (279)
Q Consensus 4 ERAVViVDdRGrstGeGi 21 (279)
+-|+||+|+.|.|.|--|
T Consensus 81 dNa~Vlin~~g~p~GTrI 98 (121)
T 3bbo_M 81 DNAAVIIDQEGNPKGTRI 98 (121)
T ss_dssp SCEEEECCTTSSCSSSCC
T ss_pred CceEEEECCCCCEeEeEE
Confidence 358999999999999888
No 213
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=20.14 E-value=59 Score=27.50 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=29.7
Q ss_pred cceeEEEeCCCC-CCCC-ceeeeccCCHHHHHHHHHccCC
Q psy7437 3 IERAVVLVDDRG-NSKN-EGIIEFTRKPAAAQALKRCQDG 40 (279)
Q Consensus 3 VERAVViVDdRG-rstG-eGiVEFa~Kp~A~kAL~rc~eg 40 (279)
...|+.||+.+. -+.| .++|-|+.|..|.+-....+..
T Consensus 94 A~~A~YVvgS~~~gpMG~~~l~pFa~k~dAe~Fa~~~GG~ 133 (175)
T 2hpu_A 94 ADKAFYVVGSARRGGMGAPEAVPFSSRDEAAAFVLAEGGQ 133 (175)
T ss_dssp GGGSEEEEESSSSCSSSCCCEEEESCHHHHHHHHHHTEEE
T ss_pred CCeeEEEeCCCCCCCCCCCcccCcCCHHHHHHHHHHcCCE
Confidence 467877776653 5678 8899999999999988887643
Done!