RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7437
         (279 letters)



>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
           {Burkholderia glumae [TaxId: 337]}
          Length = 280

 Score = 30.0 bits (67), Expect = 0.28
 Identities = 13/137 (9%), Positives = 38/137 (27%), Gaps = 4/137 (2%)

Query: 111 KEEALQKELKLEEEKLEAQMEFARYENETEILRERECRFVEEALQKELKLEEEKLEAQME 170
            +E  ++   LE  ++      +  +    +         +E  Q+     ++    ++ 
Sbjct: 130 GDEQRRQRHDLERIRIANDTTLSPEQKAARLAALDAQLTPDERAQQAALHAQQDAVTKIA 189

Query: 171 FARYENETEILREQLRQREADRERQKQEWELKERHAEEQRRCDEEAMRRQTEEIHLRM-- 228
             +    T         +    E   +  ++++     Q R    A  R           
Sbjct: 190 DLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQ 249

Query: 229 --QQQDEELRRRHQENS 243
               +  +LR++     
Sbjct: 250 DRDARIAQLRQQTFTAP 266



 Score = 25.8 bits (56), Expect = 6.0
 Identities = 9/118 (7%), Positives = 31/118 (26%)

Query: 106 ELYKQKEEALQKELKLEEEKLEAQMEFARYENETEILRERECRFVEEALQKELKLEEEKL 165
            L     +    E   +      Q    +  +  +     +    + A     +      
Sbjct: 159 RLAALDAQLTPDERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAA 218

Query: 166 EAQMEFARYENETEILREQLRQREADRERQKQEWELKERHAEEQRRCDEEAMRRQTEE 223
           + Q +   ++   +    +  +  A     +       +  ++      EA+R  + +
Sbjct: 219 QMQQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEAIRAASLD 276


>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid
           beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 192

 Score = 29.0 bits (65), Expect = 0.42
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 170 EFARYENETEILREQLRQREADRERQKQEWELKERHAEEQRRCDEEAMRRQTEEIHLRMQ 229
           E A ++   E L  + R+R +   +  +EWE  ER A+   + D++A+ +  +E    ++
Sbjct: 14  EHAHFQKAKERLEAKHRERMS---QVMREWEEAERQAKNLPKADKKAVIQHFQEKVESLE 70

Query: 230 QQDEELRRR 238
           Q+    R++
Sbjct: 71  QEAANERQQ 79


>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
           protein 1 (GBP1), C-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 300

 Score = 26.6 bits (58), Expect = 3.9
 Identities = 19/114 (16%), Positives = 40/114 (35%)

Query: 122 EEEKLEAQMEFARYENETEILRERECRFVEEALQKELKLEEEKLEAQMEFARYENETEIL 181
                  Q +    E E EI  ER      +A  K L   + K E  ME      +  + 
Sbjct: 187 SMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLK 246

Query: 182 REQLRQREADRERQKQEWELKERHAEEQRRCDEEAMRRQTEEIHLRMQQQDEEL 235
           +   +      +  K++        +EQ +  +E  ++++  +   +Q    ++
Sbjct: 247 QLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 300


>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
          Length = 493

 Score = 25.7 bits (56), Expect = 6.6
 Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 4/104 (3%)

Query: 109 KQKEEALQKELKLEEEKLEAQMEFARYENETEILRERECRFV-EEALQKELKLEEEKLEA 167
                A+ +    +  + E         +    L E++ + + +  LQK   LE EKL  
Sbjct: 388 LGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLD 447

Query: 168 QMEFARYENETEILREQLRQREADRERQKQEW-ELKERHAEEQR 210
             E+    ++   L   L   +   E  ++E   ++E+  +++R
Sbjct: 448 --EYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRR 489


>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
           {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 368

 Score = 25.6 bits (55), Expect = 7.1
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 160 LEEEKLEAQMEFARYENETEILREQLRQREADRER 194
           L +   E      +   E E  +EQL Q   +R+ 
Sbjct: 1   LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKE 35


>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 187

 Score = 25.2 bits (54), Expect = 8.2
 Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 3/88 (3%)

Query: 175 ENETEILREQLRQREADRERQKQEWELKERHAEEQRRCDEEAMRRQTEEIHLRMQQQDEE 234
           E +  +L   L  R ++    K +        +      + A+R   EE+ L        
Sbjct: 42  EADPRVL---LTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLL 98

Query: 235 LRRRHQENSIFMQVIVWLGDLKQGVYQL 262
                    +   V   LG +       
Sbjct: 99  GELDDVFTPVGFHVTPVLGRIAPEALDT 126


>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria
           monocytogenes [TaxId: 1639]}
          Length = 328

 Score = 25.3 bits (54), Expect = 9.3
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 9/76 (11%)

Query: 102 KQLYELYKQKEEALQKELKLEEEKLEAQMEFARYENETEILRERECRFVEEALQKELKLE 161
           ++L+++       LQ EL++    LEA  E      + E+L++ E       L  E +L+
Sbjct: 6   QELFQVLDNTAIILQNELEI--SYLEAVYETGENLFQKEVLQKEE-------LSSEKQLK 56

Query: 162 EEKLEAQMEFARYENE 177
            +     +E   + NE
Sbjct: 57  LQASYESIELENFSNE 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,052,068
Number of extensions: 52533
Number of successful extensions: 360
Number of sequences better than 10.0: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 76
Length of query: 279
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,254,276
Effective search space: 244583820
Effective search space used: 244583820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.0 bits)