BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy744
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|E Chain E, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
pdb|4EAG|C Chain C, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
pdb|4EAI|C Chain C, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|C Chain C, Co-Crystal Of Ampk Core With Amp Soaked With Atp
pdb|4EAK|C Chain C, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|C Chain C, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 330
Score = 334 bits (856), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 172/302 (56%), Positives = 214/302 (70%), Gaps = 28/302 (9%)
Query: 72 DGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQY 131
+ + ++ F K H+CYDLIPTS+KLVVFDT L VKKAFFALV NG+RAAPLWDS Q +
Sbjct: 22 ESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSF 81
Query: 132 VGMLTITDFIKILQMYYTSSSITMEELEEHKLET-------------------------- 165
VGMLTITDFI IL YY S+ + + ELEEHK+ET
Sbjct: 82 VGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAV 141
Query: 166 -NLIDYKIHRLPVID-EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYE 223
+LI KIHRLPVID E GN LYILTHKRIL+FL L+I + PKP F++K+L +L+IGTY
Sbjct: 142 SSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYA 201
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
N+ V T + AL F++ RVSALP+ D +G +VDI++KFDVINLAAEKTY NLDV++
Sbjct: 202 NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSV 261
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343
+A +H++ +FEGV KC L ETL ++ R+V AEVHRLVVVDE D V G++SLSDIL L
Sbjct: 262 TKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQAL 321
Query: 344 VL 345
VL
Sbjct: 322 VL 323
>pdb|2UV4|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
pdb|2UV5|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/143 (58%), Positives = 111/143 (77%)
Query: 203 DLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIF 262
+ PKP F++K+L +L+IGTY N+ V T + AL F++ RVSALP+ D +G +VDI+
Sbjct: 9 EFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY 68
Query: 263 AKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLV 322
+KFDVINLAAEKTY NLDV++ +A +H++ +FEGV KC L ETL T++ R+V AEVHRLV
Sbjct: 69 SKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLV 128
Query: 323 VVDEDDHVLGVLSLSDILVYLVL 345
VVDE+D V G++SLSDIL LVL
Sbjct: 129 VVDENDVVKGIVSLSDILQALVL 151
>pdb|2UV6|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 167 bits (424), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 82/143 (57%), Positives = 111/143 (77%)
Query: 203 DLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIF 262
+ PKP F++K+L +L+IGTY N+ V T + AL F++ RVSALP+ D +G +VDI+
Sbjct: 9 EFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY 68
Query: 263 AKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLV 322
+KFDVINLAAEKTY NLDV++ +A +H++ +FEGV KC L ETL T++ R+V AEVH+LV
Sbjct: 69 SKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHQLV 128
Query: 323 VVDEDDHVLGVLSLSDILVYLVL 345
VVDE+D V G++SLSDIL LVL
Sbjct: 129 VVDENDVVKGIVSLSDILQALVL 151
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 168/299 (56%), Gaps = 36/299 (12%)
Query: 80 KFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITD 139
KF YD++P S +L+V DT LLVKK+ L+ N I +APLWDS ++ G+LT TD
Sbjct: 25 KFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTD 84
Query: 140 FIKILQMYYTS-------------------SSITMEELEEHKLETN---------LIDYK 171
FI ++Q Y+++ ++ +++L+ + + +++ +
Sbjct: 85 FINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESR 144
Query: 172 IHRLPVIDEMGN-----VLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVE 226
R+P+ID+ V+ +LT RIL+F+ L + + FL + DL I T +N++
Sbjct: 145 SGRIPLIDQDEETHREIVVSVLTQYRILKFVAL---NCRETHFLKIPIGDLNIITQDNMK 201
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286
+ T +I ++ + RVS++P+ D G+L++++ +DV+ L Y +L +++ EA
Sbjct: 202 SCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEA 261
Query: 287 NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345
++D FEGV C ++ L T+M+ I +A VHR VVD+ ++GVL+LSDIL Y++L
Sbjct: 262 LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL 320
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYIN 202
N+ ++HR V+D++G ++ +LT IL+++ L N
Sbjct: 287 NIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLGSN 323
>pdb|2UV7|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/143 (57%), Positives = 110/143 (76%)
Query: 203 DLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIF 262
+ PKP F++K+L +L+IGTY N+ V T + AL F++ RVSALP+ D +G +VDI+
Sbjct: 9 EFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY 68
Query: 263 AKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLV 322
+KFDVINLAAEKTY NLDV++ +A +H++ +FEGV KC L ETL T++ R+V AEVH LV
Sbjct: 69 SKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHGLV 128
Query: 323 VVDEDDHVLGVLSLSDILVYLVL 345
VVDE+D V G++SLSDIL LVL
Sbjct: 129 VVDENDVVKGIVSLSDILQALVL 151
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 168/299 (56%), Gaps = 36/299 (12%)
Query: 80 KFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITD 139
KF YD++P S +L+V DT LLVKK+ L+ N I +APLWDS ++ G+LT TD
Sbjct: 18 KFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTD 77
Query: 140 FIKILQMYYTS-------------------SSITMEELEEHKLETN---------LIDYK 171
FI ++Q Y+++ ++ +++L+ + + +++ +
Sbjct: 78 FINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESR 137
Query: 172 IHRLPVIDEMGN-----VLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVE 226
R+P+ID+ V+ +LT RIL+F+ L + + FL + DL I T +N++
Sbjct: 138 SGRIPLIDQDEETHREIVVSVLTQYRILKFVAL---NCRETHFLKIPIGDLNIITQDNMK 194
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286
+ T +I ++ + RVS++P+ D G+L++++ +DV+ L Y +L +++ EA
Sbjct: 195 SCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEA 254
Query: 287 NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345
++D FEGV C ++ L T+M+ I +A VHR VVD+ ++GVL+LSDIL Y++L
Sbjct: 255 LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL 313
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 176/321 (54%), Gaps = 40/321 (12%)
Query: 81 FFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDF 140
F + YD++PTS +L+VFD L VK + L N I +APLWDS ++ G+LT+ DF
Sbjct: 18 FIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADF 77
Query: 141 IKILQMYYTSSSI--TMEELEEHKL---------------ET-------NLIDY------ 170
+ +++ YY SSS + E+++ +L ET +L+D
Sbjct: 78 VNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSK 137
Query: 171 -KIHRLPVID---EMGN--VLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYEN 224
+ R+P+ID E G+ ++ +LT RIL+F+ + + + + L L + IGT+ N
Sbjct: 138 SRARRIPLIDVDGETGSEMIVSVLTQYRILKFISM---NCKETAMLRVPLNQMTIGTWSN 194
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK 284
+ T + ET + ++ E+ +SA+P+ +SEG L++++ DV++L + Y+NLD+++
Sbjct: 195 LATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVG 254
Query: 285 EANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344
EA + F+GV C + L + + I + VHRL VVDE+ + G+LSL+DIL Y++
Sbjct: 255 EALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYII 314
Query: 345 LKPSDDDIGVDETSSDSEVPV 365
+ GV E + + E V
Sbjct: 315 YDKTTTP-GVPEQTDNFESAV 334
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/321 (32%), Positives = 176/321 (54%), Gaps = 40/321 (12%)
Query: 81 FFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDF 140
F + YD++PTS +L+VFD L VK + L N I +APLWDS ++ G+LT+ DF
Sbjct: 17 FIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADF 76
Query: 141 IKILQMYYTSSSI--TMEELEEHKL---------------ET-------NLIDY------ 170
+ +++ YY SSS + E+++ +L ET +L+D
Sbjct: 77 VNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSK 136
Query: 171 -KIHRLPVID---EMGN--VLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYEN 224
+ R+P+ID E G+ ++ +LT RIL+F+ + + + + L L + IGT+ N
Sbjct: 137 SRARRIPLIDVDGETGSEMIVSVLTQYRILKFISM---NCKETAMLRVPLNQMTIGTWSN 193
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK 284
+ T + ET + ++ E+ +SA+P+ +SEG L++++ DV++L + Y+NLD+++
Sbjct: 194 LATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVG 253
Query: 285 EANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344
EA + F+GV C + L + + I + VHRL VVDE+ + G+LSL+DIL Y++
Sbjct: 254 EALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYII 313
Query: 345 LKPSDDDIGVDETSSDSEVPV 365
+ GV E + + E V
Sbjct: 314 YDKTTTP-GVPEQTDNFESAV 333
>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 87/140 (62%)
Query: 209 FLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVI 268
FL + DL I T +N+++ T +I ++ + RVS++P+ D G+L++++ +DV+
Sbjct: 5 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL 64
Query: 269 NLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDD 328
L Y +L +++ EA ++D FEGV C ++ L T+M+ I +A VHR VVD+
Sbjct: 65 GLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG 124
Query: 329 HVLGVLSLSDILVYLVLKPS 348
++GVL+LSDIL Y++L +
Sbjct: 125 RLVGVLTLSDILKYILLGSN 144
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYIN 202
N+ ++HR V+D++G ++ +LT IL+++ L N
Sbjct: 108 NIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLGSN 144
>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
pdb|2NYE|B Chain B, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 84/137 (61%)
Query: 209 FLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVI 268
FL + DL I T +N ++ T +I ++ + RVS++P+ D G+L++++ +DV+
Sbjct: 5 FLKIPIGDLNIITQDNXKSCQXTTPVIDVIQXLTQGRVSSVPIIDENGYLINVYEAYDVL 64
Query: 269 NLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDD 328
L Y +L +++ EA ++D FEGV C ++ L T+ + I +A VHR VVD+
Sbjct: 65 GLIKGGIYNDLSLSVGEALXRRSDDFEGVYTCTKNDKLSTIXDNIRKARVHRFFVVDDVG 124
Query: 329 HVLGVLSLSDILVYLVL 345
++GVL+LSDIL Y++L
Sbjct: 125 RLVGVLTLSDILKYILL 141
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYIN 202
N+ ++HR V+D++G ++ +LT IL+++ L N
Sbjct: 108 NIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLGSN 144
>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
pdb|3SL7|B Chain B, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From
Arabidopsis Thaliana
Length = 180
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 24/140 (17%)
Query: 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINL----AAEKTYTN 278
+N+ V TS+ AL +E++V+ LP+ D LV + + +D++ L + TN
Sbjct: 14 QNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTN 73
Query: 279 L----DVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVR--------------AEVHR 320
L D T K NE + + K + D L T +VR + R
Sbjct: 74 LFPDVDSTWKTFNELQKLISKTYGKVVGD--LXTPSPLVVRDSTNLEDAARLLLETKFRR 131
Query: 321 LVVVDEDDHVLGVLSLSDIL 340
L VVD D ++G+L+ +++
Sbjct: 132 LPVVDADGKLIGILTRGNVV 151
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILR 195
L++ K RLPV+D G ++ ILT ++R
Sbjct: 124 LLETKFRRLPVVDADGKLIGILTRGNVVR 152
>pdb|3FHM|A Chain A, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|B Chain B, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|C Chain C, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
pdb|3FHM|D Chain D, Crystal Structure Of The Cbs-Domain Containing Protein
Atu1752 From Agrobacterium Tumefaciens
Length = 165
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
+V TV + SI A ++ A+ +TD++G ++ IF + D++ A + +L ++
Sbjct: 36 DVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSV 95
Query: 284 KEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340
A + V +C + T +ME I+ R V V+E+ + G++S+ D++
Sbjct: 96 SVA------MTKNVVRCQHNSTTDQLME-IMTGGRFRHVPVEENGRLAGIISIGDVV 145
>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|B Chain B, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|C Chain C, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
pdb|2P9M|D Chain D, Crystal Structure Of Conserved Hypothetical Protein Mj0922
From Methanocaldococcus Jannaschii Dsm 2661
Length = 138
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 14/104 (13%)
Query: 170 YKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVA 229
YKI LPVID+ V+ I+T I L + L T+ D+ ++V T+
Sbjct: 37 YKISSLPVIDDENKVIGIVTTTDIGYNL------IRDKYTLETTIGDV---XTKDVITIH 87
Query: 230 EETSIIHALRKF-----LERRVSALPMTDSEGHLVDIFAKFDVI 268
E+ SI+ A++K E ++ LP+ D LV I + D+I
Sbjct: 88 EDASILEAIKKXDISGKKEEIINQLPVVDKNNKLVGIISDGDII 131
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 20/138 (14%)
Query: 213 TLRDLKIG--TYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDV-IN 269
TL+++K+ +NV T ++ A K L+ ++S+LP+ D E ++ I D+ N
Sbjct: 4 TLKNIKVKDVXTKNVITAKRHEGVVEAFEKXLKYKISSLPVIDDENKVIGIVTTTDIGYN 63
Query: 270 LAAEKTYTNLDVTLKEAN-------EHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLV 322
L +K YT L+ T+ + E ++K + E I +++L
Sbjct: 64 LIRDK-YT-LETTIGDVXTKDVITIHEDASILEAIKKX----DISGKKEEI----INQLP 113
Query: 323 VVDEDDHVLGVLSLSDIL 340
VVD+++ ++G++S DI+
Sbjct: 114 VVDKNNKLVGIISDGDII 131
>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop
Deletion) From Arabidopsis Thaliana
Length = 152
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 64/135 (47%), Gaps = 7/135 (5%)
Query: 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINL----AAEKTYTN 278
E++ V T++ AL +E R++ P+ D + LV + + +D++ L + KT+
Sbjct: 15 EDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNA 74
Query: 279 LDVTLKEANEHKTDWFEGVEKCLLDE--TLFTVMERIVRAEVHRLVVVDEDDHVLGVLSL 336
+ L + N +++E L + ++ + RL VVD D ++G+++
Sbjct: 75 VQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITR 134
Query: 337 SDIL-VYLVLKPSDD 350
+++ L +K S D
Sbjct: 135 GNVVRAALQIKRSGD 149
>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
pdb|2CU0|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Pyrococcus Horikoshii Ot3
Length = 486
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 109 AFFALVYNGIRAAPLWDSVHQQYVGMLTITDFI----KILQMYYTSSSITM-EELEEHKL 163
A F + +GI P+ + ++ VG++T D K+++ T IT+ E +E +
Sbjct: 115 ALFLMEKHGIDGLPVVED--EKVVGIITKKDIAAREGKLVKELMTKEVITVPESIEVEEA 172
Query: 164 ETNLIDYKIHRLPVIDEMGNVLYILT 189
+I+ +I RLPV+DE G ++ ++T
Sbjct: 173 LKIMIENRIDRLPVVDERGKLVGLIT 198
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 22/157 (14%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVE 226
+ +YKI LPV+DE G ++ +LT+ R +RF L+K ++DL + E +
Sbjct: 121 MAEYKIGGLPVVDEEGRLVGLLTN-RDVRF----------EKNLSKKIKDL-MTPREKLI 168
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286
+ S+ A + R+ LP+ + LV + D++++ A
Sbjct: 169 VAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHPN---------AA 219
Query: 287 NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVV 323
+ K G ET+ V E++V+A V +V+
Sbjct: 220 RDEKGRLLVGAAVGTSPETMERV-EKLVKAGVDVIVI 255
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286
TV + ++ A+ E ++ LP+ D EG LV + DV + NL +K
Sbjct: 107 TVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV------RFEKNLSKKIK-- 158
Query: 287 NEHKTDWFEGVEKCLL---DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340
D EK ++ D +L E + + + +L +V +D+ ++G++++ DI+
Sbjct: 159 -----DLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIM 210
>pdb|3KPB|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPB|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|B Chain B, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|C Chain C, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine.
pdb|3KPD|D Chain D, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 122
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVE 226
LI + I+ LP++DE G ++ I+T I + L + KT+ ++ NV
Sbjct: 27 LIKHNINHLPIVDEHGKLVGIITSWDIAKAL----------AQNKKTIEEI---MTRNVI 73
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274
T E+ + H K + +S +P+ D +V I D+ L K
Sbjct: 74 TAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGGK 121
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286
T SI+ A + ++ ++ LP+ D G LV I +D+ A+ T ++ +
Sbjct: 13 TAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIEEIMTRN- 71
Query: 287 NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDI 339
V DE + V ++ + + + VVD+ V+G+++ DI
Sbjct: 72 ----------VITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDI 114
>pdb|3KPC|A Chain A, Crystal Structure Of The Cbs Domain Pair Of Protein Mj0100
In Complex With 5 -Methylthioadenosine And S-Adenosyl-L-
Methionine
Length = 124
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVE 226
LI + I+ LP++DE G ++ I+T I + L + KT+ ++ NV
Sbjct: 29 LIKHNINHLPIVDEHGKLVGIITSWDIAKAL----------AQNKKTIEEI---MTRNVI 75
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274
T E+ + H K + +S +P+ D +V I D+ L K
Sbjct: 76 TAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGGK 123
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286
T SI+ A + ++ ++ LP+ D G LV I +D+ A+ T ++ +
Sbjct: 15 TAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIEEIMTRN- 73
Query: 287 NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDI 339
V DE + V ++ + + + VVD+ V+G+++ DI
Sbjct: 74 ----------VITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDI 116
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 228 VAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273
V E+T++ A + LE + LP+ DS+G LV I + +V+ A +
Sbjct: 112 VEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ 157
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 64/149 (42%), Gaps = 21/149 (14%)
Query: 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVT 282
E++ V T++ AL +E R++ P+ D + LV + + +D++ L + + +
Sbjct: 15 EDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSISGSGRTENS 74
Query: 283 LKEANEHKTDWFEGVEKCL-----------LDETLFTVMER---------IVRAEVHRLV 322
+ + F V+K L + V E+ ++ + RL
Sbjct: 75 MFPEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLP 134
Query: 323 VVDEDDHVLGVLSLSDIL-VYLVLKPSDD 350
VVD D ++G+++ +++ L +K S D
Sbjct: 135 VVDSDGKLVGIITRGNVVRAALQIKRSGD 163
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 65/301 (21%), Positives = 123/301 (40%), Gaps = 58/301 (19%)
Query: 77 IFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLT 136
+FV+ K I + K+V ++KA + N R P+ ++ + + VG++T
Sbjct: 1 MFVRVMK-------IAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIIT 53
Query: 137 ---ITDFIK-------ILQMYYTSSSITMEELEEHKLETNLIDYK--------------- 171
I DF+ I + + + + E +E N+I K
Sbjct: 54 SMDIVDFMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTK 113
Query: 172 -IHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGT-YENVETVA 229
+ P++++ ++ ++T + ++R L I++ + RD+ + T E ++ VA
Sbjct: 114 NVGGAPIVNDENQLISLITERDVIRALLDKIDE--NEVIDDYITRDVIVATPGERLKDVA 171
Query: 230 EETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAE-------KTYTNLDVT 282
T + + R+ LP+ SEG LV I D I L +T ++T
Sbjct: 172 R-TMVRNGFRR--------LPVV-SEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREIT 221
Query: 283 LKEANE-HKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341
E K D E + L + E +V ++ L VVDE+ + G+++ D+L
Sbjct: 222 NVRMEEIMKRDVITAKE----GDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLK 277
Query: 342 Y 342
Y
Sbjct: 278 Y 278
>pdb|2YZQ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Pyrococcus Horikoshii
Length = 282
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 18/138 (13%)
Query: 146 MYYTSSSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLP 205
M +IT+ + LE YK+ PV+++ G ++ I++ KRIL
Sbjct: 7 MTQNPVTITLPATRNYALEL-FKKYKVRSFPVVNKEGKLVGIISVKRIL----------- 54
Query: 206 KPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKF 265
+N L + +V V E ++ A + LE + + DS+G V I
Sbjct: 55 ----VNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVG 110
Query: 266 DVIN--LAAEKTYTNLDV 281
D+I A + Y +++
Sbjct: 111 DIIRRYFAKSEKYKGVEI 128
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYEN-- 224
+++Y R+ V+D G + ILT I+R F ++ + ++I Y
Sbjct: 86 MLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAK----------SEKYKGVEIEPYYQRY 135
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVIN---LAAEKTYTNLDV 281
V V E T + AL+ L ALP+ DSEG+LV I + D++ + T L
Sbjct: 136 VSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAA 195
Query: 282 TLKEA---NEHKTDWFEGVEKCLLDETLFTVMER 312
+ +E H T FE E L ++ + +M R
Sbjct: 196 SSEEEWILESHPTLLFEKFELQLPNKPVAEIMTR 229
>pdb|1PBJ|A Chain A, Cbs Domain Protein
Length = 125
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 305 TLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340
T+ E+ V+ V RL+V +EDD ++GV+S +DIL
Sbjct: 83 TIKEAAEKXVKNVVWRLLV-EEDDEIIGVISATDIL 117
>pdb|4AF0|A Chain A, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 243 ERRVSALPMTDSEGHLVDIFAKFDVI 268
E + LP+ DS GHLV + A+ D++
Sbjct: 228 ETKKGKLPIVDSNGHLVSLVARSDLL 253
>pdb|4AF0|B Chain B, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 243 ERRVSALPMTDSEGHLVDIFAKFDVI 268
E + LP+ DS GHLV + A+ D++
Sbjct: 228 ETKKGKLPIVDSNGHLVSLVARSDLL 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,211,605
Number of Sequences: 62578
Number of extensions: 466596
Number of successful extensions: 1155
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1041
Number of HSP's gapped (non-prelim): 94
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)