Query psy744
Match_columns 405
No_of_seqs 565 out of 3662
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 18:21:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy744.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/744hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764|consensus 100.0 1.5E-34 3.3E-39 281.8 29.1 301 52-352 33-367 (381)
2 COG3448 CBS-domain-containing 99.9 3.1E-23 6.6E-28 187.3 10.8 165 45-274 210-374 (382)
3 COG2524 Predicted transcriptio 99.8 2.2E-18 4.7E-23 153.5 13.2 121 211-344 171-291 (294)
4 cd04641 CBS_pair_28 The CBS do 99.7 1.1E-16 2.4E-21 131.9 14.8 119 224-342 2-120 (120)
5 COG3448 CBS-domain-containing 99.7 5.3E-17 1.1E-21 147.2 12.2 177 129-346 198-374 (382)
6 COG2524 Predicted transcriptio 99.7 6.6E-16 1.4E-20 137.8 12.1 122 84-273 171-292 (294)
7 cd04619 CBS_pair_6 The CBS dom 99.7 3.1E-15 6.7E-20 122.0 14.7 112 224-341 2-113 (114)
8 cd04618 CBS_pair_5 The CBS dom 99.7 1.1E-15 2.4E-20 121.6 11.6 94 224-341 2-97 (98)
9 cd04603 CBS_pair_KefB_assoc Th 99.6 4.7E-15 1E-19 120.4 13.3 109 224-341 2-110 (111)
10 COG3620 Predicted transcriptio 99.6 8E-15 1.7E-19 121.5 13.3 122 211-345 64-185 (187)
11 cd04630 CBS_pair_17 The CBS do 99.6 1.3E-14 2.8E-19 118.3 14.4 111 224-341 2-113 (114)
12 PRK15094 magnesium/cobalt effl 99.6 1.4E-14 3E-19 137.6 15.4 167 211-397 66-233 (292)
13 PRK14869 putative manganese-de 99.6 4.5E-14 9.8E-19 146.3 19.3 218 85-344 68-304 (546)
14 cd04617 CBS_pair_4 The CBS dom 99.6 2.7E-14 5.9E-19 117.2 14.1 113 224-341 2-117 (118)
15 cd04614 CBS_pair_1 The CBS dom 99.6 1.5E-14 3.3E-19 114.5 11.9 94 224-341 2-95 (96)
16 cd04623 CBS_pair_10 The CBS do 99.6 4.6E-14 1E-18 114.2 14.7 111 224-341 2-112 (113)
17 cd04627 CBS_pair_14 The CBS do 99.6 4E-14 8.6E-19 117.0 14.4 117 224-340 2-121 (123)
18 cd04608 CBS_pair_PALP_assoc Th 99.6 1.2E-14 2.6E-19 120.8 11.0 114 223-343 2-124 (124)
19 cd04643 CBS_pair_30 The CBS do 99.6 3.6E-14 7.7E-19 115.7 13.4 111 224-342 2-116 (116)
20 cd04593 CBS_pair_EriC_assoc_ba 99.6 5.7E-14 1.2E-18 114.5 14.2 112 224-342 2-115 (115)
21 cd04607 CBS_pair_NTP_transfera 99.6 6.7E-14 1.4E-18 113.7 14.5 110 224-341 3-112 (113)
22 cd04600 CBS_pair_HPP_assoc Thi 99.6 4.9E-14 1.1E-18 116.4 13.7 113 223-341 2-123 (124)
23 cd04801 CBS_pair_M50_like This 99.6 3.5E-14 7.5E-19 115.6 12.6 111 224-341 2-113 (114)
24 cd04605 CBS_pair_MET2_assoc Th 99.6 1.2E-13 2.6E-18 111.5 15.3 108 223-341 2-109 (110)
25 cd04642 CBS_pair_29 The CBS do 99.6 5E-14 1.1E-18 117.0 13.0 117 224-341 2-125 (126)
26 cd04639 CBS_pair_26 The CBS do 99.6 6.4E-14 1.4E-18 113.3 13.3 109 224-341 2-110 (111)
27 TIGR03520 GldE gliding motilit 99.6 6.1E-14 1.3E-18 139.4 15.7 162 210-393 189-351 (408)
28 cd04590 CBS_pair_CorC_HlyC_ass 99.6 1.1E-13 2.3E-18 112.0 14.1 108 224-341 2-110 (111)
29 PRK11543 gutQ D-arabinose 5-ph 99.6 5.7E-14 1.2E-18 136.0 14.4 121 211-342 196-318 (321)
30 cd04624 CBS_pair_11 The CBS do 99.6 1.6E-13 3.6E-18 111.1 14.9 110 224-341 2-111 (112)
31 cd04631 CBS_pair_18 The CBS do 99.6 9.4E-14 2E-18 114.8 13.5 113 224-342 2-125 (125)
32 cd04803 CBS_pair_15 The CBS do 99.5 1.1E-13 2.4E-18 113.8 13.8 113 224-342 2-122 (122)
33 cd04621 CBS_pair_8 The CBS dom 99.5 1.2E-13 2.6E-18 116.5 14.1 111 224-341 2-134 (135)
34 COG4536 CorB Putative Mg2+ and 99.5 5.8E-14 1.3E-18 131.8 12.6 170 210-398 198-368 (423)
35 cd04626 CBS_pair_13 The CBS do 99.5 1.7E-13 3.6E-18 110.9 13.8 109 224-341 2-110 (111)
36 PRK10892 D-arabinose 5-phospha 99.5 9.6E-14 2.1E-18 134.7 14.5 123 211-342 201-323 (326)
37 cd04582 CBS_pair_ABC_OpuCA_ass 99.5 1.7E-13 3.7E-18 109.8 13.6 104 224-341 2-105 (106)
38 cd04587 CBS_pair_CAP-ED_DUF294 99.5 1.7E-13 3.7E-18 111.1 13.4 111 224-341 2-112 (113)
39 cd04629 CBS_pair_16 The CBS do 99.5 1.3E-13 2.8E-18 112.0 12.3 111 224-341 2-113 (114)
40 cd04615 CBS_pair_2 The CBS dom 99.5 2.9E-13 6.3E-18 109.8 14.2 111 224-341 2-112 (113)
41 cd04596 CBS_pair_DRTGG_assoc T 99.5 1.2E-13 2.6E-18 111.3 11.8 106 223-341 2-107 (108)
42 cd04588 CBS_pair_CAP-ED_DUF294 99.5 4E-13 8.7E-18 108.4 14.8 108 224-341 2-109 (110)
43 cd04640 CBS_pair_27 The CBS do 99.5 2.3E-13 5E-18 113.1 13.4 112 224-341 2-125 (126)
44 cd04620 CBS_pair_7 The CBS dom 99.5 3E-13 6.6E-18 110.1 13.9 110 224-341 2-114 (115)
45 cd04613 CBS_pair_SpoIVFB_EriC_ 99.5 2.6E-13 5.6E-18 110.0 13.4 111 224-341 2-113 (114)
46 cd04618 CBS_pair_5 The CBS dom 99.5 1.8E-13 3.9E-18 108.8 12.1 95 96-269 2-97 (98)
47 cd04632 CBS_pair_19 The CBS do 99.5 3E-13 6.5E-18 112.5 13.9 113 224-342 2-128 (128)
48 cd04604 CBS_pair_KpsF_GutQ_ass 99.5 3.3E-13 7.1E-18 109.5 13.4 111 224-341 3-113 (114)
49 cd04583 CBS_pair_ABC_OpuCA_ass 99.5 5.2E-13 1.1E-17 107.4 14.4 107 223-341 2-108 (109)
50 cd04612 CBS_pair_SpoIVFB_EriC_ 99.5 4.1E-13 9E-18 108.3 13.9 109 224-341 2-110 (111)
51 cd04636 CBS_pair_23 The CBS do 99.5 3.2E-13 6.9E-18 113.1 13.4 112 224-342 2-132 (132)
52 cd04586 CBS_pair_BON_assoc Thi 99.5 2.1E-13 4.5E-18 114.7 12.3 112 223-341 2-134 (135)
53 cd04635 CBS_pair_22 The CBS do 99.5 2.9E-13 6.3E-18 111.4 12.8 112 224-341 2-121 (122)
54 cd04625 CBS_pair_12 The CBS do 99.5 5.8E-13 1.3E-17 107.8 14.3 110 224-341 2-111 (112)
55 PRK11573 hypothetical protein; 99.5 4.3E-13 9.2E-18 133.5 16.2 171 209-397 184-355 (413)
56 cd04611 CBS_pair_PAS_GGDEF_DUF 99.5 6.7E-13 1.5E-17 107.1 14.4 109 224-341 2-110 (111)
57 cd04589 CBS_pair_CAP-ED_DUF294 99.5 6.2E-13 1.3E-17 107.6 14.2 110 224-342 2-111 (111)
58 cd04622 CBS_pair_9 The CBS dom 99.5 5.9E-13 1.3E-17 107.9 14.1 111 224-341 2-112 (113)
59 COG2905 Predicted signal-trans 99.5 1.7E-13 3.8E-18 134.8 12.7 128 207-345 144-271 (610)
60 cd04595 CBS_pair_DHH_polyA_Pol 99.5 6.7E-13 1.5E-17 107.2 14.2 108 223-341 2-109 (110)
61 cd04637 CBS_pair_24 The CBS do 99.5 6.4E-13 1.4E-17 109.4 13.8 112 224-342 2-122 (122)
62 cd04585 CBS_pair_ACT_assoc2 Th 99.5 7.6E-13 1.7E-17 108.5 13.7 111 224-341 2-121 (122)
63 cd04800 CBS_pair_CAP-ED_DUF294 99.5 1.1E-12 2.4E-17 106.0 14.1 109 224-341 2-110 (111)
64 cd04802 CBS_pair_3 The CBS dom 99.5 1.3E-12 2.8E-17 105.8 14.6 110 224-341 2-111 (112)
65 PRK07807 inosine 5-monophospha 99.5 5.8E-13 1.3E-17 134.1 14.8 119 213-347 90-208 (479)
66 cd04606 CBS_pair_Mg_transporte 99.5 7.3E-13 1.6E-17 106.9 12.5 103 228-343 2-109 (109)
67 cd04633 CBS_pair_20 The CBS do 99.5 8.2E-13 1.8E-17 108.5 12.6 111 224-342 2-121 (121)
68 cd04609 CBS_pair_PALP_assoc2 T 99.5 1.1E-12 2.3E-17 105.6 12.9 109 224-342 2-110 (110)
69 cd04641 CBS_pair_28 The CBS do 99.5 2E-12 4.4E-17 106.3 14.6 117 96-269 2-119 (120)
70 TIGR03520 GldE gliding motilit 99.5 1.1E-12 2.5E-17 130.4 15.0 172 72-314 176-349 (408)
71 PRK01862 putative voltage-gate 99.5 1E-12 2.2E-17 137.0 15.0 127 209-345 444-572 (574)
72 cd04601 CBS_pair_IMPDH This cd 99.5 1.2E-12 2.7E-17 105.3 12.4 107 223-341 2-109 (110)
73 cd04610 CBS_pair_ParBc_assoc T 99.4 1.7E-12 3.7E-17 104.1 13.0 105 223-341 2-106 (107)
74 cd04602 CBS_pair_IMPDH_2 This 99.4 1.8E-12 4E-17 105.5 13.2 107 223-341 2-113 (114)
75 PRK07107 inosine 5-monophospha 99.4 8E-13 1.7E-17 133.8 13.3 122 213-343 95-219 (502)
76 COG3620 Predicted transcriptio 99.4 1.4E-12 3E-17 108.4 10.9 122 84-273 64-185 (187)
77 cd04599 CBS_pair_GGDEF_assoc2 99.4 2E-12 4.4E-17 103.2 11.8 103 224-341 2-104 (105)
78 PRK15094 magnesium/cobalt effl 99.4 6.1E-12 1.3E-16 119.6 16.8 194 73-346 53-249 (292)
79 cd02205 CBS_pair The CBS domai 99.4 6.4E-12 1.4E-16 100.7 14.3 111 224-341 2-112 (113)
80 TIGR00400 mgtE Mg2+ transporte 99.4 5.5E-13 1.2E-17 134.5 9.9 179 77-344 121-306 (449)
81 cd04619 CBS_pair_6 The CBS dom 99.4 5.9E-12 1.3E-16 102.5 14.2 112 96-269 2-113 (114)
82 cd04603 CBS_pair_KefB_assoc Th 99.4 3.6E-12 7.8E-17 103.4 12.6 109 96-269 2-110 (111)
83 cd04591 CBS_pair_EriC_assoc_eu 99.4 3.4E-12 7.4E-17 102.6 12.3 100 224-342 3-105 (105)
84 cd04584 CBS_pair_ACT_assoc Thi 99.4 5.1E-12 1.1E-16 103.6 13.6 111 224-341 2-120 (121)
85 cd04594 CBS_pair_EriC_assoc_ar 99.4 4E-12 8.7E-17 101.8 12.4 100 226-341 4-103 (104)
86 PLN02274 inosine-5'-monophosph 99.4 4.6E-12 1E-16 128.5 14.6 112 222-345 107-223 (505)
87 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 7.6E-12 1.6E-16 125.9 15.8 118 213-347 89-206 (475)
88 cd04642 CBS_pair_29 The CBS do 99.4 7.9E-12 1.7E-16 103.7 13.1 124 96-269 2-125 (126)
89 PTZ00314 inosine-5'-monophosph 99.4 6.4E-12 1.4E-16 127.4 14.5 111 222-344 103-218 (495)
90 cd04634 CBS_pair_21 The CBS do 99.4 1.2E-11 2.7E-16 105.2 13.9 110 224-341 2-142 (143)
91 cd04617 CBS_pair_4 The CBS dom 99.4 1.2E-11 2.7E-16 101.3 13.4 113 96-269 2-117 (118)
92 TIGR00400 mgtE Mg2+ transporte 99.4 4.1E-12 8.9E-17 128.2 12.6 121 211-347 130-255 (449)
93 TIGR01302 IMP_dehydrog inosine 99.4 7.3E-12 1.6E-16 126.2 14.2 111 222-344 87-201 (450)
94 COG0517 FOG: CBS domain [Gener 99.4 2E-11 4.3E-16 99.4 14.1 109 223-340 7-117 (117)
95 TIGR00393 kpsF KpsF/GutQ famil 99.4 6.6E-12 1.4E-16 118.4 12.9 113 212-335 155-268 (268)
96 COG4109 Predicted transcriptio 99.4 4.1E-12 8.8E-17 118.3 10.8 121 213-347 189-309 (432)
97 cd04630 CBS_pair_17 The CBS do 99.4 1.9E-11 4.1E-16 99.4 13.3 112 96-269 2-113 (114)
98 cd04598 CBS_pair_GGDEF_assoc T 99.4 1.5E-11 3.3E-16 100.6 12.8 111 224-341 2-118 (119)
99 PRK05567 inosine 5'-monophosph 99.3 1.4E-11 3.1E-16 125.3 14.6 117 213-344 88-205 (486)
100 cd04627 CBS_pair_14 The CBS do 99.3 3E-11 6.5E-16 99.7 14.0 120 96-268 2-121 (123)
101 cd04638 CBS_pair_25 The CBS do 99.3 2.2E-11 4.7E-16 97.6 12.5 104 224-341 2-105 (106)
102 COG1253 TlyC Hemolysins and re 99.3 2.6E-11 5.6E-16 121.7 15.7 131 210-351 204-335 (429)
103 cd04600 CBS_pair_HPP_assoc Thi 99.3 2.5E-11 5.4E-16 100.0 12.8 123 94-269 1-123 (124)
104 KOG1764|consensus 99.3 7E-11 1.5E-15 115.9 17.3 178 95-274 162-361 (381)
105 cd04607 CBS_pair_NTP_transfera 99.3 4.1E-11 8.9E-16 97.2 13.0 110 96-269 3-112 (113)
106 PRK11543 gutQ D-arabinose 5-ph 99.3 2E-11 4.3E-16 118.3 13.0 123 84-270 196-318 (321)
107 cd04623 CBS_pair_10 The CBS do 99.3 4.6E-11 1E-15 96.5 12.9 111 96-269 2-112 (113)
108 cd04608 CBS_pair_PALP_assoc Th 99.3 1.9E-11 4.2E-16 101.4 10.9 112 96-270 3-123 (124)
109 cd04605 CBS_pair_MET2_assoc Th 99.3 6.6E-11 1.4E-15 95.3 13.6 108 95-269 2-109 (110)
110 PRK07807 inosine 5-monophospha 99.3 1E-10 2.2E-15 118.0 17.5 126 78-274 82-207 (479)
111 cd04593 CBS_pair_EriC_assoc_ba 99.3 6.5E-11 1.4E-15 96.3 13.3 111 96-269 2-114 (115)
112 TIGR01137 cysta_beta cystathio 99.3 3.9E-11 8.4E-16 121.8 14.6 120 211-343 334-453 (454)
113 PRK05567 inosine 5'-monophosph 99.3 5.4E-11 1.2E-15 121.1 15.5 177 87-343 89-266 (486)
114 PRK10892 D-arabinose 5-phospha 99.3 3.9E-11 8.5E-16 116.4 13.7 123 84-270 201-323 (326)
115 cd04590 CBS_pair_CorC_HlyC_ass 99.3 1.2E-10 2.7E-15 93.9 14.0 109 96-269 2-110 (111)
116 cd04643 CBS_pair_30 The CBS do 99.3 6.7E-11 1.4E-15 96.2 12.4 114 96-269 2-115 (116)
117 cd04615 CBS_pair_2 The CBS dom 99.3 1.4E-10 3E-15 93.9 14.1 110 97-269 3-112 (113)
118 cd04592 CBS_pair_EriC_assoc_eu 99.3 7.3E-11 1.6E-15 99.3 12.4 104 224-327 2-118 (133)
119 cd04586 CBS_pair_BON_assoc Thi 99.3 5.9E-11 1.3E-15 99.7 11.7 133 94-269 1-134 (135)
120 cd04801 CBS_pair_M50_like This 99.3 7E-11 1.5E-15 96.0 11.6 111 96-269 2-113 (114)
121 cd04631 CBS_pair_18 The CBS do 99.3 1.3E-10 2.9E-15 95.8 13.3 123 96-269 2-124 (125)
122 cd04614 CBS_pair_1 The CBS dom 99.3 4.1E-11 8.9E-16 94.7 9.6 94 96-195 2-95 (96)
123 cd04803 CBS_pair_15 The CBS do 99.3 1.7E-10 3.7E-15 94.7 13.7 120 96-269 2-121 (122)
124 cd04620 CBS_pair_7 The CBS dom 99.2 1.6E-10 3.5E-15 93.9 13.2 110 96-269 2-114 (115)
125 cd04596 CBS_pair_DRTGG_assoc T 99.2 9.3E-11 2E-15 94.3 11.5 105 96-269 3-107 (108)
126 cd04639 CBS_pair_26 The CBS do 99.2 1.3E-10 2.8E-15 93.8 12.3 109 96-269 2-110 (111)
127 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 1.2E-10 2.7E-15 94.1 12.2 111 96-269 2-113 (114)
128 cd04583 CBS_pair_ABC_OpuCA_ass 99.2 1.7E-10 3.8E-15 92.5 12.9 106 96-269 3-108 (109)
129 PRK01862 putative voltage-gate 99.2 9.2E-11 2E-15 122.3 14.3 131 78-273 440-572 (574)
130 cd04624 CBS_pair_11 The CBS do 99.2 2E-10 4.4E-15 92.8 13.3 110 96-269 2-111 (112)
131 cd04582 CBS_pair_ABC_OpuCA_ass 99.2 1.5E-10 3.3E-15 92.5 12.3 104 96-269 2-105 (106)
132 cd04587 CBS_pair_CAP-ED_DUF294 99.2 2.4E-10 5.2E-15 92.4 13.2 111 96-269 2-112 (113)
133 cd04621 CBS_pair_8 The CBS dom 99.2 2.4E-10 5.2E-15 96.3 13.3 129 96-269 2-134 (135)
134 cd04629 CBS_pair_16 The CBS do 99.2 2.1E-10 4.5E-15 92.9 12.5 112 96-269 2-113 (114)
135 cd04626 CBS_pair_13 The CBS do 99.2 2E-10 4.3E-15 92.8 12.3 109 96-269 2-110 (111)
136 cd04637 CBS_pair_24 The CBS do 99.2 4.4E-10 9.5E-15 92.3 14.5 120 96-269 2-121 (122)
137 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 2.8E-10 6E-15 92.1 13.1 111 96-269 3-113 (114)
138 cd04635 CBS_pair_22 The CBS do 99.2 1.4E-10 3E-15 95.3 11.4 120 96-269 2-121 (122)
139 cd04632 CBS_pair_19 The CBS do 99.2 2.9E-10 6.2E-15 94.4 13.4 124 96-269 2-127 (128)
140 cd04611 CBS_pair_PAS_GGDEF_DUF 99.2 4.7E-10 1E-14 90.3 14.3 109 96-269 2-110 (111)
141 cd04588 CBS_pair_CAP-ED_DUF294 99.2 5.5E-10 1.2E-14 89.9 14.6 108 96-269 2-109 (110)
142 TIGR01303 IMP_DH_rel_1 IMP deh 99.2 1E-09 2.3E-14 110.6 19.6 125 78-274 81-205 (475)
143 cd04800 CBS_pair_CAP-ED_DUF294 99.2 5.1E-10 1.1E-14 90.2 14.1 109 96-269 2-110 (111)
144 cd04640 CBS_pair_27 The CBS do 99.2 2E-10 4.4E-15 95.3 11.8 115 96-269 2-125 (126)
145 cd04595 CBS_pair_DHH_polyA_Pol 99.2 5.7E-10 1.2E-14 89.9 14.1 108 95-269 2-109 (110)
146 cd04585 CBS_pair_ACT_assoc2 Th 99.2 3.9E-10 8.3E-15 92.3 13.3 120 96-269 2-121 (122)
147 cd04636 CBS_pair_23 The CBS do 99.2 3.1E-10 6.8E-15 94.8 12.9 130 96-269 2-131 (132)
148 cd04622 CBS_pair_9 The CBS dom 99.2 4.7E-10 1E-14 90.7 13.2 111 96-269 2-112 (113)
149 cd04802 CBS_pair_3 The CBS dom 99.2 6.2E-10 1.3E-14 89.9 13.6 110 96-269 2-111 (112)
150 cd04589 CBS_pair_CAP-ED_DUF294 99.2 7.2E-10 1.6E-14 89.4 13.9 109 96-269 2-110 (111)
151 cd04625 CBS_pair_12 The CBS do 99.2 5.3E-10 1.2E-14 90.3 12.9 110 96-269 2-111 (112)
152 PRK11573 hypothetical protein; 99.2 5.3E-10 1.1E-14 111.4 15.3 174 73-313 173-349 (413)
153 cd04633 CBS_pair_20 The CBS do 99.2 5.2E-10 1.1E-14 91.7 12.6 119 96-269 2-120 (121)
154 cd04602 CBS_pair_IMPDH_2 This 99.2 5.1E-10 1.1E-14 91.0 12.2 107 96-269 3-113 (114)
155 COG0517 FOG: CBS domain [Gener 99.2 6.9E-10 1.5E-14 90.2 12.9 109 95-268 7-117 (117)
156 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 1.1E-09 2.4E-14 88.1 13.9 109 96-269 2-110 (111)
157 cd02205 CBS_pair The CBS domai 99.1 1.6E-09 3.4E-14 86.6 14.3 111 96-269 2-112 (113)
158 cd04599 CBS_pair_GGDEF_assoc2 99.1 7.9E-10 1.7E-14 88.1 12.4 102 96-268 2-103 (105)
159 cd04606 CBS_pair_Mg_transporte 99.1 5E-10 1.1E-14 90.2 11.1 102 100-270 2-108 (109)
160 COG2239 MgtE Mg/Co/Ni transpor 99.1 4.6E-10 9.9E-15 111.5 12.4 121 211-347 131-256 (451)
161 cd04601 CBS_pair_IMPDH This cd 99.1 5.1E-10 1.1E-14 89.9 10.6 106 96-269 3-109 (110)
162 cd04609 CBS_pair_PALP_assoc2 T 99.1 1.6E-09 3.6E-14 86.8 13.4 108 96-269 2-109 (110)
163 cd04610 CBS_pair_ParBc_assoc T 99.1 1.7E-09 3.6E-14 86.5 13.1 105 95-269 2-106 (107)
164 cd04584 CBS_pair_ACT_assoc Thi 99.1 1.2E-09 2.6E-14 89.4 12.4 119 96-269 2-120 (121)
165 TIGR01186 proV glycine betaine 99.1 3.8E-09 8.2E-14 103.4 18.0 160 171-346 196-360 (363)
166 PRK10070 glycine betaine trans 99.1 4.1E-09 8.9E-14 104.4 17.9 160 171-346 231-395 (400)
167 COG4535 CorC Putative Mg2+ and 99.1 1.8E-10 3.9E-15 101.9 7.3 130 211-351 66-196 (293)
168 PRK07107 inosine 5-monophospha 99.1 6.3E-10 1.4E-14 112.9 11.7 110 98-271 108-219 (502)
169 TIGR01137 cysta_beta cystathio 99.1 1.5E-09 3.3E-14 110.2 14.4 129 75-271 325-453 (454)
170 cd04594 CBS_pair_EriC_assoc_ar 99.1 1.7E-09 3.7E-14 86.4 11.6 100 98-269 4-103 (104)
171 cd04634 CBS_pair_21 The CBS do 99.1 3.4E-09 7.3E-14 90.1 13.6 141 96-269 2-142 (143)
172 TIGR01302 IMP_dehydrog inosine 99.1 1.5E-09 3.2E-14 109.6 13.1 119 86-272 81-201 (450)
173 PLN02274 inosine-5'-monophosph 99.1 1.5E-09 3.2E-14 110.3 13.1 115 94-273 107-223 (505)
174 COG2905 Predicted signal-trans 99.1 1.2E-09 2.5E-14 108.2 11.6 127 80-273 145-271 (610)
175 cd04591 CBS_pair_EriC_assoc_eu 99.1 3.3E-09 7.1E-14 85.2 12.3 100 96-269 3-104 (105)
176 TIGR00393 kpsF KpsF/GutQ famil 99.1 1.1E-09 2.4E-14 103.3 11.0 114 84-263 154-268 (268)
177 COG4109 Predicted transcriptio 99.0 2E-09 4.4E-14 100.6 10.3 93 166-273 215-307 (432)
178 PF00571 CBS: CBS domain CBS d 99.0 1.4E-09 3E-14 77.0 7.1 52 293-344 5-56 (57)
179 cd04598 CBS_pair_GGDEF_assoc T 99.0 6.9E-09 1.5E-13 84.7 11.4 113 96-269 2-118 (119)
180 PTZ00314 inosine-5'-monophosph 99.0 6.8E-09 1.5E-13 105.5 13.7 118 87-271 98-217 (495)
181 COG1253 TlyC Hemolysins and re 99.0 1.8E-08 4E-13 101.2 15.9 175 70-313 189-366 (429)
182 cd04592 CBS_pair_EriC_assoc_eu 98.9 1.4E-08 3E-13 85.4 12.0 117 96-255 2-118 (133)
183 cd04638 CBS_pair_25 The CBS do 98.9 1.6E-08 3.5E-13 80.8 11.8 104 96-269 2-105 (106)
184 PF00571 CBS: CBS domain CBS d 98.8 1.6E-08 3.5E-13 71.5 7.4 55 215-272 2-56 (57)
185 COG4536 CorB Putative Mg2+ and 98.8 6.4E-08 1.4E-12 91.6 13.0 130 83-275 198-327 (423)
186 KOG2550|consensus 98.8 9E-09 2E-13 98.0 6.6 119 213-343 106-227 (503)
187 COG4175 ProV ABC-type proline/ 98.7 5.5E-08 1.2E-12 90.6 9.4 147 173-345 233-384 (386)
188 COG2239 MgtE Mg/Co/Ni transpor 98.6 3.9E-07 8.5E-12 90.8 12.4 118 86-274 133-255 (451)
189 COG4535 CorC Putative Mg2+ and 98.5 2.1E-06 4.6E-11 76.5 11.2 161 84-313 66-227 (293)
190 PRK10070 glycine betaine trans 98.4 5.4E-06 1.2E-10 82.3 14.7 107 100-275 290-396 (400)
191 PRK14869 putative manganese-de 98.4 1.9E-07 4E-12 97.1 3.9 165 166-342 196-391 (546)
192 KOG0474|consensus 98.4 6E-07 1.3E-11 90.0 6.7 135 207-344 577-747 (762)
193 TIGR01186 proV glycine betaine 98.2 1.1E-05 2.4E-10 79.1 12.2 94 166-274 267-360 (363)
194 KOG0474|consensus 98.2 7.9E-06 1.7E-10 82.2 10.0 161 81-271 578-746 (762)
195 TIGR03415 ABC_choXWV_ATP choli 98.1 3.3E-05 7.2E-10 76.2 12.7 147 170-345 230-381 (382)
196 cd04597 CBS_pair_DRTGG_assoc2 98.1 9.7E-06 2.1E-10 65.9 6.3 49 293-341 64-112 (113)
197 smart00116 CBS Domain in cysta 98.0 2E-05 4.3E-10 52.4 6.3 47 297-343 2-48 (49)
198 cd04597 CBS_pair_DRTGG_assoc2 98.0 2.1E-05 4.5E-10 63.9 7.5 55 212-269 58-112 (113)
199 KOG2550|consensus 97.9 2.6E-05 5.6E-10 74.9 6.8 110 95-271 116-227 (503)
200 smart00116 CBS Domain in cysta 97.8 9.3E-05 2E-09 49.0 6.3 47 225-271 2-48 (49)
201 KOG0475|consensus 97.5 0.00057 1.2E-08 69.3 9.9 118 225-343 558-694 (696)
202 KOG0475|consensus 96.9 0.0074 1.6E-07 61.5 10.7 136 96-271 557-694 (696)
203 COG1125 OpuBA ABC-type proline 96.5 0.016 3.5E-07 53.2 9.0 97 172-269 203-307 (309)
204 COG1125 OpuBA ABC-type proline 95.4 0.068 1.5E-06 49.2 7.7 110 223-342 187-308 (309)
205 KOG0476|consensus 95.3 0.24 5.1E-06 51.9 12.2 60 85-146 588-648 (931)
206 TIGR03415 ABC_choXWV_ATP choli 95.2 0.071 1.5E-06 52.8 7.9 86 167-272 295-380 (382)
207 COG4175 ProV ABC-type proline/ 93.9 0.1 2.2E-06 49.5 5.3 84 166-273 301-384 (386)
208 KOG0476|consensus 92.7 1.8 4E-05 45.6 12.4 58 213-273 589-648 (931)
209 PRK11388 DNA-binding transcrip 76.8 4.9 0.00011 42.8 6.0 94 166-264 67-163 (638)
210 KOG2118|consensus 75.7 4.4 9.5E-05 41.7 5.0 124 211-344 203-328 (498)
211 PRK11388 DNA-binding transcrip 62.6 30 0.00065 36.9 8.2 92 235-335 62-162 (638)
212 PF05198 IF3_N: Translation in 50.1 32 0.0007 25.6 4.2 28 318-345 12-39 (76)
213 PRK10026 arsenate reductase; P 47.1 1.7E+02 0.0038 24.5 10.0 109 225-343 6-116 (141)
214 PF05198 IF3_N: Translation in 44.5 52 0.0011 24.5 4.6 30 246-275 12-41 (76)
215 KOG2118|consensus 38.1 66 0.0014 33.2 5.7 128 81-272 200-328 (498)
216 COG2216 KdpB High-affinity K+ 35.8 45 0.00098 34.2 3.9 39 303-342 412-450 (681)
217 PF14827 Cache_3: Sensory doma 31.2 49 0.0011 26.4 2.9 17 320-336 93-109 (116)
218 PF14827 Cache_3: Sensory doma 29.0 57 0.0012 26.1 2.9 17 248-264 93-109 (116)
219 COG2216 KdpB High-affinity K+ 26.5 1.2E+02 0.0026 31.3 5.1 41 233-274 414-454 (681)
220 cd03034 ArsC_ArsC Arsenate Red 25.5 3.4E+02 0.0074 21.5 7.7 81 227-318 5-87 (112)
221 PF14044 NETI: NETI protein 23.7 95 0.0021 21.6 2.7 21 299-319 3-23 (57)
222 PRK00028 infC translation init 23.5 1.1E+02 0.0023 26.9 3.8 17 233-249 36-52 (177)
223 COG0290 InfC Translation initi 23.4 1.6E+02 0.0035 25.6 4.6 32 245-276 17-48 (176)
224 PF13365 Trypsin_2: Trypsin-li 22.6 61 0.0013 25.3 2.0 18 316-333 103-120 (120)
225 PRK12559 transcriptional regul 22.4 4.4E+02 0.0095 21.6 7.2 98 227-333 6-105 (131)
226 TIGR00168 infC translation ini 22.4 1E+02 0.0023 26.6 3.4 16 233-248 24-39 (165)
227 CHL00199 infC translation init 22.4 1.2E+02 0.0025 26.8 3.7 25 248-272 26-50 (182)
228 PRK13344 spxA transcriptional 22.1 4.1E+02 0.0088 21.9 6.8 106 226-341 5-112 (132)
229 PHA00673 acetyltransferase dom 21.8 1.7E+02 0.0036 25.1 4.5 34 304-337 40-73 (154)
No 1
>KOG1764|consensus
Probab=100.00 E-value=1.5e-34 Score=281.75 Aligned_cols=301 Identities=53% Similarity=0.815 Sum_probs=262.5
Q ss_pred CCCcccCCcCcccchhhhhccchhHHHHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCee
Q psy744 52 RGLPVATSFLDKIDFADLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQY 131 (405)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~ 131 (405)
..+|....+....+............|.+|+..++||+++|++.++++++..+++.+|+..|..++++++|+||...+++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~ 112 (381)
T KOG1764|consen 33 SRRPEASPFLVSENEVETAESNAVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQF 112 (381)
T ss_pred hccccccccccccccccccccchhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCcccee
Confidence 33444444444445555556666778999999999999999999999999999999999999999999999999998999
Q ss_pred eeEEeHHHHHHHHHHhhCCCC--CCHHHHhhc------------------c------------HHHHHHhcCCCEEEEEe
Q psy744 132 VGMLTITDFIKILQMYYTSSS--ITMEELEEH------------------K------------LETNLIDYKIHRLPVID 179 (405)
Q Consensus 132 ~GilT~~Dil~~l~~~~~~~~--~~~~~l~~~------------------~------------i~~~l~~~~i~~lpVvd 179 (405)
+|++|+.||+..+..++..+. .....+... + ....+.+++++++||+|
T Consensus 113 ~g~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d 192 (381)
T KOG1764|consen 113 VGMLTITDFITVLLRYYKSKSSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID 192 (381)
T ss_pred EEEEEHHHHHHHHHHhhccCCcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeec
Confidence 999999999999887776411 111111100 0 01178999999999999
Q ss_pred -CCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcE
Q psy744 180 -EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHL 258 (405)
Q Consensus 180 -~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l 258 (405)
+.+++.+++|++.|+++++.+.+.++...++..++.++.++.+.++..+..++++.+|++.|.+++++++||||..|+.
T Consensus 193 ~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~ 272 (381)
T KOG1764|consen 193 PETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDENGKK 272 (381)
T ss_pred ccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcCCCce
Confidence 7889999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeHHHHHHHHHhccccchhhh-HHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHH
Q psy744 259 VDIFAKFDVINLAAEKTYTNLDVT-LKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLS 337 (405)
Q Consensus 259 vGivt~~Dl~~~~~~~~~~~l~~~-v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~ 337 (405)
+|+++..|+.....+..+..++.. +.+....+.....++++|.++++|.++++.|..+++|+++|||++|.++|+||.+
T Consensus 273 v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLs 352 (381)
T KOG1764|consen 273 VGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLS 352 (381)
T ss_pred ecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHH
Confidence 999999999999999988888888 8888877777778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCC
Q psy744 338 DILVYLVLKPSDDDI 352 (405)
Q Consensus 338 DIl~~l~~~~~~~~~ 352 (405)
||+.++...+.+...
T Consensus 353 Dil~~l~~~p~~~~~ 367 (381)
T KOG1764|consen 353 DILSYLVLTPSGGTP 367 (381)
T ss_pred HHHHHHHhCccCCCC
Confidence 999999988876543
No 2
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.89 E-value=3.1e-23 Score=187.34 Aligned_cols=165 Identities=25% Similarity=0.346 Sum_probs=143.8
Q ss_pred hhhhhcCCCCcccCCcCcccchhhhhccchhHHHHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeE
Q psy744 45 AVLFRDSRGLPVATSFLDKIDFADLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLW 124 (405)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~ 124 (405)
++|.+-+++++.+.+ ||+.+++++|+|+|+|.++..+|.|+| |++|+++.+++++.+|+++|.+|+++++||+
T Consensus 210 ~aL~~~~E~lDIdrd-----dLe~llr~~elqa~~R~~~~LtcadIM--SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~ 282 (382)
T COG3448 210 AALQRLGETLDIDRD-----DLERLLRETELQALRRRMGELTCADIM--SRDVVTVSTDTSIDHARKLLQEHRIKALPVL 282 (382)
T ss_pred HHHHhcCceecCCHH-----HHHHHHHHHHHHHHHHHhccccHHHhc--CccceecCCcCChHHHHHHHHHcCccccccc
Confidence 567777889998887 999999999999999999999999999 9999999999999999999999999999999
Q ss_pred eCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCC
Q psy744 125 DSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDL 204 (405)
Q Consensus 125 d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~ 204 (405)
|++ .+++|++|.+|+++.... .| ...+ +
T Consensus 283 d~~-~rl~GiVt~~dl~~~a~~---~p---~qrl------------------------------------r--------- 310 (382)
T COG3448 283 DEH-RRLVGIVTQRDLLKHARP---SP---FQRL------------------------------------R--------- 310 (382)
T ss_pred ccc-cceeeeeeHHHHhhccCc---ch---HHHh------------------------------------h---------
Confidence 998 899999999999954321 00 0000 0
Q ss_pred CCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 205 PKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 205 ~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
.+...+++.+| ..++.++.++++..+++..+.+.+.+++||+|++|+++||||+.|++.++...
T Consensus 311 ---~~~~~~vk~im---t~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 311 ---FLRPPTVKGIM---TTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRN 374 (382)
T ss_pred ---ccCCCcccccc---cCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHH
Confidence 11245788888 47999999999999999999999999999999999999999999999887754
No 3
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.78 E-value=2.2e-18 Score=153.48 Aligned_cols=121 Identities=22% Similarity=0.407 Sum_probs=112.2
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHK 290 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~ 290 (405)
+.+++++| .++++++.+++|+.++.++|.++++++.||+|++ +++|++|.+|+..++.++ .++..|+++
T Consensus 171 k~~V~~~~---s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g---~~~~kV~~~---- 239 (294)
T COG2524 171 KEKVKNLM---SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANG---NLDAKVSDY---- 239 (294)
T ss_pred cchhhhhc---cCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcC---CccccHHHH----
Confidence 55788888 5899999999999999999999999999999965 999999999999999987 456777777
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
|.++++++.+|+.+.+|+++|..+++.+|.|+|.+|+++|+||++|||+.++
T Consensus 240 --M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 240 --MRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred --hccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 6689999999999999999999999999999999999999999999999986
No 4
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.73 E-value=1.1e-16 Score=131.86 Aligned_cols=119 Identities=51% Similarity=0.830 Sum_probs=99.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+++++.+||+|++|+++|+++.+|++.....+.......++.+.+.....|..++.++.++
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 81 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPD 81 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcCC
Confidence 57889999999999999999999999999989999999999999987654422222223444333334466778999999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
+++.++++.|.+++.+.+||+|++|+++|+||++|++++
T Consensus 82 ~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~~ 120 (120)
T cd04641 82 DCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQF 120 (120)
T ss_pred CcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhcC
Confidence 999999999999999999999988999999999999863
No 5
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.72 E-value=5.3e-17 Score=147.17 Aligned_cols=177 Identities=25% Similarity=0.311 Sum_probs=137.4
Q ss_pred CeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCcc
Q psy744 129 QQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPS 208 (405)
Q Consensus 129 ~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~ 208 (405)
++-+| ++..|+-..+..+.+.-++..++++.. +.+ .+.- .+.. .
T Consensus 198 ~~rvg-fs~~Dld~aL~~~~E~lDIdrddLe~l-----lr~---------------------~elq-a~~R--------~ 241 (382)
T COG3448 198 SQRVG-FSSEDLDAALQRLGETLDIDRDDLERL-----LRE---------------------TELQ-ALRR--------R 241 (382)
T ss_pred hhccC-CCHHHHHHHHHhcCceecCCHHHHHHH-----HHH---------------------HHHH-HHHH--------H
Confidence 45677 899999999998888777777777631 110 0110 1111 1
Q ss_pred ccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhh
Q psy744 209 FLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANE 288 (405)
Q Consensus 209 ~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~ 288 (405)
....+..++| .++++++..++++.+|.++|.++++..+||+|++.+++|+|+++|+++......+..+..- .--.
T Consensus 242 ~~~LtcadIM---SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~--~~~~ 316 (382)
T COG3448 242 MGELTCADIM---SRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFL--RPPT 316 (382)
T ss_pred hccccHHHhc---CccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhhcc--CCCc
Confidence 1234677888 5999999999999999999999999999999999999999999999986554332222100 0002
Q ss_pred ccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 289 HKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 289 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
++..|+.++.++.++++..+++-.+.+.+.|++||+|++|+++||||.+|++.+++.+
T Consensus 317 vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 317 VKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRN 374 (382)
T ss_pred ccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHH
Confidence 3455888999999999999999999999999999999999999999999999999854
No 6
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.66 E-value=6.6e-16 Score=137.78 Aligned_cols=122 Identities=30% Similarity=0.409 Sum_probs=108.9
Q ss_pred hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccH
Q psy744 84 FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKL 163 (405)
Q Consensus 84 ~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i 163 (405)
..++.++| ++++++++++.|+++|.+.+.+++++++||+|.+ +++|++|.+|+...+... .
T Consensus 171 k~~V~~~~--s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d--k~vGiit~~dI~~aia~g--~------------- 231 (294)
T COG2524 171 KEKVKNLM--SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD--KIVGIITLSDIAKAIANG--N------------- 231 (294)
T ss_pred cchhhhhc--cCCceEecCCccHHHHHHHHHHcCccCCceecCC--ceEEEEEHHHHHHHHHcC--C-------------
Confidence 34667787 8999999999999999999999999999999994 999999999999777643 0
Q ss_pred HHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHh
Q psy744 164 ETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 164 ~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~ 243 (405)
.+.+++++| .++++++..|+.+.||+++|..
T Consensus 232 ----------------------------------------------~~~kV~~~M---~k~vitI~eDe~i~dAir~M~~ 262 (294)
T COG2524 232 ----------------------------------------------LDAKVSDYM---RKNVITINEDEDIYDAIRLMNK 262 (294)
T ss_pred ----------------------------------------------ccccHHHHh---ccCCceEcCchhHHHHHHHHHh
Confidence 144788888 4899999999999999999999
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
++++++.|+|.+|+++|++|..|+++.+..
T Consensus 263 ~nVGRLlV~ds~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 263 NNVGRLLVTDSNGKPVGIITRTDILTRIAG 292 (294)
T ss_pred cCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence 999999999999999999999999987653
No 7
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.66 E-value=3.1e-15 Score=122.05 Aligned_cols=112 Identities=20% Similarity=0.296 Sum_probs=96.3
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
.+.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++............++.++ |..++.++.++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~------~~~~~~~v~~~ 75 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENV------MTRAVVSCRPG 75 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHH------hcCCCeeECCC
Confidence 367889999999999999999999999999999999999999998866541112234456665 44688899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++..++||+|++|+++|+||.+|+++
T Consensus 76 ~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 76 DLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred CCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 99999999999999999999998899999999999975
No 8
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.66 E-value=1.1e-15 Score=121.64 Aligned_cols=94 Identities=20% Similarity=0.329 Sum_probs=86.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
.++++++++++.++.+.|.+++++++||+|++ |+++|++|..|+.+... +.++.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------~~~v~~ 57 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------LVSIHP 57 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------eEEeCC
Confidence 47899999999999999999999999999974 89999999999976321 578999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDED-DHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiIt~~DIl~ 341 (405)
++++.+|++.|.+++++++||+|++ |+++|+||.+||++
T Consensus 58 ~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 58 ERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred CCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 9999999999999999999999987 89999999999985
No 9
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.64 E-value=4.7e-15 Score=120.45 Aligned_cols=109 Identities=17% Similarity=0.267 Sum_probs=93.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+...+. + .+.++.++ |..++.++.++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~-~--~~~~v~~~------~~~~~~~v~~~ 72 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPND-Y--ETLKVCEV------YIVPVPIVYCD 72 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcccc-c--cccChhhe------eecCCcEECCC
Confidence 467889999999999999999999999999889999999999998743221 1 12345554 55678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.+|+++|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 73 ~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 73 SKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred CcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 99999999999999999999998899999999999985
No 10
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.62 E-value=8e-15 Score=121.52 Aligned_cols=122 Identities=20% Similarity=0.288 Sum_probs=103.6
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHK 290 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~ 290 (405)
.-+.+.+| .++++.+.+++++.+++++|.+++++.+||+++ ++++|-||..++.++..++..+-.+..++++
T Consensus 64 ~ita~~iM---~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e~i~~~~vr~v---- 135 (187)
T COG3620 64 RITAKTIM---HSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGMESIRSLRVREV---- 135 (187)
T ss_pred eEeHhhhc---cCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccccchhhhhHHHH----
Confidence 33667778 589999999999999999999999999999996 8999999999999998776433234556665
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
|..+++++++++++..+..++..++. +.|+ ++|+++||||+.||++.+.+
T Consensus 136 --M~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~-e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 136 --MGEPFPTVSPDESLNVISQLLEEHPA--VLVV-ENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred --hcCCCCcCCCCCCHHHHHHHHhhCCe--EEEE-eCCceEEEEeHHHHHHHHhc
Confidence 66899999999999999888887765 6677 48999999999999998863
No 11
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.62 E-value=1.3e-14 Score=118.27 Aligned_cols=111 Identities=21% Similarity=0.274 Sum_probs=95.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
++.++.+++++.++++.|.+.+++.+||+|++ |+++|+++..|+++.+..........++.++ |..++.++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~------~~~~~~~v~~ 75 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEI------MTKPLISVSP 75 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHH------hcCCCeeECC
Confidence 56889999999999999999999999999987 8999999999999866543222223456665 3467889999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+++.+.+||+|+ |+++|+||..||++
T Consensus 76 ~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 76 DMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred CCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 999999999999999999999996 99999999999985
No 12
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.61 E-value=1.4e-14 Score=137.64 Aligned_cols=167 Identities=15% Similarity=0.189 Sum_probs=127.6
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEH 289 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~ 289 (405)
..+++++|... .++++++.++++.++++.+.+.+++++||++++ ++++|+|+.+|++....... . ...+.++
T Consensus 66 ~~~V~diMtpr-~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~-~--~~~l~~l--- 138 (292)
T PRK15094 66 DQRVRDIMIPR-SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA-E--AFSMDKV--- 138 (292)
T ss_pred CCEEeEEccch-HHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccC-C--cCCHHHH---
Confidence 56899999522 369999999999999999999999999999876 78999999999987553221 1 1234454
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCCCCCccCCCCCCCCCCCCCC
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVPVDPDL 369 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (405)
| +++.++++++++.++++.|.+++.+.+||+|++|.++|+||++||++.+.++...+.... .......
T Consensus 139 ---~-r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~--------~~~~i~~ 206 (292)
T PRK15094 139 ---L-RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEE--------DDIDFRQ 206 (292)
T ss_pred ---c-CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccc--------cccccEE
Confidence 2 456689999999999999999999999999999999999999999999996543321110 0011122
Q ss_pred cCCcccccccCCccccccccCccccccc
Q psy744 370 ASSDDKVFEENEEPRDYVQNSCWGEVPV 397 (405)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (405)
..+....+.+...++++++..++. +|.
T Consensus 207 ~~~~~~~v~G~~~l~dl~~~l~~~-l~~ 233 (292)
T PRK15094 207 LSRHTWTVRALASIEDFNEAFGTH-FSD 233 (292)
T ss_pred eCCCeEEEEeccCHHHHHHHhCCC-CCC
Confidence 334456777888888888888774 454
No 13
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.60 E-value=4.5e-14 Score=146.28 Aligned_cols=218 Identities=19% Similarity=0.225 Sum_probs=149.7
Q ss_pred cccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhC-----CCCCCHHHHh
Q psy744 85 HKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYT-----SSSITMEELE 159 (405)
Q Consensus 85 ~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~-----~~~~~~~~l~ 159 (405)
.++.|+| ..+++++++++++.+|++.|.+++++.+||+|++ ++++|++|..|+.+.+..... ....+..++.
T Consensus 68 ~~V~dim--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~ 144 (546)
T PRK14869 68 PQVRDLE--IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLENII 144 (546)
T ss_pred CcHHHhc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHH
Confidence 5788998 6789999999999999999999999999999987 899999999999987664332 1112223322
Q ss_pred hccHHHHHHhcCCCEEEEEeCCCC-EEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHH
Q psy744 160 EHKLETNLIDYKIHRLPVIDEMGN-VLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHAL 238 (405)
Q Consensus 160 ~~~i~~~l~~~~i~~lpVvd~~~~-vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~ 238 (405)
+. +...++..+-. . -...++ ++|-.....+..++. ...++.+.... ++.
T Consensus 145 ~~-L~~~~l~~~~~-~--~~~~~~~~v~a~~~~~~~~~~~-----------------------~~~lvi~gdr~---d~~ 194 (546)
T PRK14869 145 RT-LDGEVLVGAEE-D--KVEEGKVVVAAMAPESLLERIE-----------------------EGDIVIVGDRE---DIQ 194 (546)
T ss_pred Hh-cCcEEEecCcc-c--ccccccEEEEEcCHHHHHHhcc-----------------------CCCEEEEcCcH---HHH
Confidence 10 00000000000 0 000111 233333333322111 12344443333 445
Q ss_pred HHHHhcCCCEEEEECCC------------CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCc-cCceEecCCCC
Q psy744 239 RKFLERRVSALPMTDSE------------GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWF-EGVEKCLLDET 305 (405)
Q Consensus 239 ~~m~~~~~~~lpVvd~~------------g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~-~~~~~v~~~~~ 305 (405)
..+.+.+++++.|+... +.+.+++|..|.......- ....++.++ |. +++.+++++++
T Consensus 195 ~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ii~t~~dt~~t~~~l---~~~~~V~~i------M~~~~~~~~~~~~~ 265 (546)
T PRK14869 195 LAAIEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTFTTARLI---NQSIPVSYI------MTTEDLVTFSKDDY 265 (546)
T ss_pred HHHHHcCCCEEEECCCCCCCHHHHHHHHhCCCeEEEecccHHHHHHHh---hcCCCHHHh------ccCCCcEEECCCCc
Confidence 56788899999887643 2588999999988776543 234566666 66 78999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 306 LFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 306 l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
+.++.+.|.+++.+.+||+|++|+++|+||..|+++...
T Consensus 266 ~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~ 304 (546)
T PRK14869 266 LEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVR 304 (546)
T ss_pred HHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhcccc
Confidence 999999999999999999999999999999999998654
No 14
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.59 E-value=2.7e-14 Score=117.19 Aligned_cols=113 Identities=19% Similarity=0.293 Sum_probs=94.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+++..++||+|++|+++|+++..|+++...... .....++.+++. ...++.++.++
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~-~~~~~~~~~~~~----~~~~~~~v~~~ 76 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA-DLQKVPVGVIMT----RMPNITTTTPE 76 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC-CccCCCHHHHhC----CCCCcEEECCC
Confidence 5678999999999999999999999999998899999999999998765331 111334555532 01267899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCC---CcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDED---DHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiIt~~DIl~ 341 (405)
+++.+++++|.+++.+++||+|++ |+++|+||.+||++
T Consensus 77 ~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 77 ESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 999999999999999999999976 69999999999875
No 15
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.59 E-value=1.5e-14 Score=114.47 Aligned_cols=94 Identities=29% Similarity=0.428 Sum_probs=86.4
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
+++++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+.. .+.++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~------------------------~~~~v~~~ 57 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS------------------------EVVTATKR 57 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC------------------------CcEEecCC
Confidence 578899999999999999999999999999889999999999997621 16789999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+++||+|++|+++|+||.+||++
T Consensus 58 ~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 58 TTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred CCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999999999997799999999999986
No 16
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=4.6e-14 Score=114.23 Aligned_cols=111 Identities=25% Similarity=0.403 Sum_probs=95.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.++.++.++++.|.+.+++.+||+|++++++|+++..|+++.+..........++.++ |..++.++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~ 75 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEI------MTRNVITVTPD 75 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHh------cCCCcEEECCC
Confidence 567889999999999999999999999999889999999999999876644222223355555 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+.+.+++||+++ |+++|+||..||++
T Consensus 76 ~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 76 DTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred CcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 99999999999999999999986 99999999999976
No 17
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.59 E-value=4e-14 Score=117.05 Aligned_cols=117 Identities=17% Similarity=0.246 Sum_probs=92.4
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhcccc--chhhhHHHhhhccccCccCceEe
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYT--NLDVTLKEANEHKTDWFEGVEKC 300 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~--~l~~~v~~~~~~~~~~~~~~~~v 300 (405)
++.++.+++++.++++.|.+.+++++||+|++ |+++|+++..|+++........ ..+............|..++.++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISI 81 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEe
Confidence 56789999999999999999899999999987 9999999999998866433110 00000000011112356788899
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHH
Q psy744 301 LLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340 (405)
Q Consensus 301 ~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl 340 (405)
.+++++.+|++.|.+++.+++||+|++|+++|+||.+||-
T Consensus 82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 82 NGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred CCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 9999999999999999999999999889999999999974
No 18
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.58 E-value=1.2e-14 Score=120.75 Aligned_cols=114 Identities=13% Similarity=0.247 Sum_probs=96.8
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
+++.++.++.++.++++.|.+++++.+||+|++|+++|+++..|++....++. ...+.++.++ |.+++.++.+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~-~~~~~~v~~i------m~~~~~~v~~ 74 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGK-VQPSDPVSKA------LYKQFKRVNK 74 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhc-cCCCCcHHHH------hhccceecCC
Confidence 46788999999999999999999999999998899999999999998766542 2335577777 5578999999
Q ss_pred CCCHHHHHHHHH---------HcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 303 DETLFTVMERIV---------RAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 303 ~~~l~~a~~~m~---------~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
++++.++.++|. +.+.+.+||+|++|+++|+||..||++++
T Consensus 75 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 75 NDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred CCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence 999999999653 33677889999889999999999999874
No 19
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=3.6e-14 Score=115.67 Aligned_cols=111 Identities=23% Similarity=0.327 Sum_probs=92.7
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccch----hhhHHHhhhccccCccCceE
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNL----DVTLKEANEHKTDWFEGVEK 299 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l----~~~v~~~~~~~~~~~~~~~~ 299 (405)
+++++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+++.......... ..++.++ |..++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~------~~~~~~~ 75 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDV------MNTDVPV 75 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHH------hcCCCce
Confidence 56889999999999999999999999999988999999999999987654321111 2345554 4567889
Q ss_pred ecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 300 CLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 300 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
+.+++++.++++.|.+.+ .+||+|++|+++|+||..|++++
T Consensus 76 v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 76 IIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred ecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence 999999999999998865 59999988999999999999863
No 20
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.58 E-value=5.7e-14 Score=114.52 Aligned_cols=112 Identities=20% Similarity=0.287 Sum_probs=95.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+...+... ....++.++ |..++.++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~-~~~~~~~~~------~~~~~~~v~~~ 74 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEA-GEPSAVDEV------ATPPLLTVHPD 74 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccc-cccccHHHh------ccCCceEECCC
Confidence 46788999999999999999999999999999999999999999987654321 112234444 45788999999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEeHHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDED--DHVLGVLSLSDILVY 342 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiIt~~DIl~~ 342 (405)
+++.++++.|.+++.+.+||+|++ |+++|+||.+||+++
T Consensus 75 ~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 75 EPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred CCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 999999999999999999999977 799999999999863
No 21
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.58 E-value=6.7e-14 Score=113.74 Aligned_cols=110 Identities=20% Similarity=0.298 Sum_probs=94.6
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
.+.++.++.++.++++.|.+.+...++|+|++|+++|+++..|+++...... ....++.++ |..++.++.++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~--~~~~~v~~~------~~~~~~~v~~~ 74 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGL--SLDDPVSEV------MNRNPITAKVG 74 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCC--CcCCCHHHh------hcCCCEEEcCC
Confidence 3567899999999999999999999999998999999999999987665432 123456665 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+++||+|++|+++|+||.+||+.
T Consensus 75 ~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 75 SSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 99999999999999999999998899999999999974
No 22
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=4.9e-14 Score=116.37 Aligned_cols=113 Identities=24% Similarity=0.353 Sum_probs=95.8
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcccc---------chhhhHHHhhhccccC
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT---------NLDVTLKEANEHKTDW 293 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~---------~l~~~v~~~~~~~~~~ 293 (405)
+++.++.++.++.++.+.|.+.+++++||+|++|+++|+++..|++......... ....++.++ |
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~------~ 75 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDI------M 75 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHh------c
Confidence 4678899999999999999999999999999889999999999998766433211 012234444 5
Q ss_pred ccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 294 FEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 294 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
...+.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 76 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 76 SPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred cCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 578899999999999999999999999999998899999999999986
No 23
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=3.5e-14 Score=115.62 Aligned_cols=111 Identities=19% Similarity=0.319 Sum_probs=91.8
Q ss_pred CeeEEcCCCCHHHHHHHHHhcC-CCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 224 NVETVAEETSIIHALRKFLERR-VSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
++.++++++++.++++.|.+++ .+.+||+|++|+++|+++..|+++...... ...++.+++.. ...+.++.+
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~---~~~~v~~~~~~----~~~~~~v~~ 74 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQW---AQTTVIQVMTP----AAKLVTVLS 74 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhc---cccchhhhhcc----cccceEECC
Confidence 5678999999999999997665 889999998899999999999988764331 13345555421 123568999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+++.+++||+|++|+++|+||..||++
T Consensus 75 ~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 75 EESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred CCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 999999999999999999999997799999999999875
No 24
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=1.2e-13 Score=111.49 Aligned_cols=108 Identities=26% Similarity=0.449 Sum_probs=94.4
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
+++.++.++.++.++++.|.+++++.+||+|++|+++|+++..|+++...... .++.++ |..++.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~-----~~~~~~------~~~~~~~v~~ 70 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK-----KSVEDI------MTRNVITATP 70 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc-----cCHHHh------cCCCCeEECC
Confidence 56788999999999999999999999999998899999999999987655431 124444 4467889999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+++.+.+||++++|+++|+||+.||++
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 71 DEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred CCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 999999999999999999999998899999999999975
No 25
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=5e-14 Score=117.00 Aligned_cols=117 Identities=24% Similarity=0.387 Sum_probs=94.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHH-------HhhhccccCccC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK-------EANEHKTDWFEG 296 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~-------~~~~~~~~~~~~ 296 (405)
++.++++++++.++++.|.+++++++||+|++|+++|+++..|+++...... ........ ........+..+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPD-DLLLYRTITFKELSEKFTDSDGVKSRP 80 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcc-hhhcccchhhhhhhhhcccccccccCC
Confidence 5678999999999999999999999999998899999999999988764331 11110000 000111235578
Q ss_pred ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 297 VEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 297 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+.++.+++++.++++.|.+++.+++||+|++|+++|+||..||++
T Consensus 81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 899999999999999999999999999998899999999999986
No 26
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=6.4e-14 Score=113.30 Aligned_cols=109 Identities=21% Similarity=0.327 Sum_probs=94.5
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+.+.+.... .+.++.++ |..++.++.++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~---~~~~v~~~------~~~~~~~i~~~ 72 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGG---PDAPVRGV------MRRDFPTVSPS 72 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcC---CCCcHHHH------hcCCCcEECCC
Confidence 5678899999999999999888999999998899999999999998765442 12345555 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++...+||+|++|+++|+||..||.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 73 ATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999999999997799999999999975
No 27
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.56 E-value=6.1e-14 Score=139.44 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=126.4
Q ss_pred cccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhh
Q psy744 210 LNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANE 288 (405)
Q Consensus 210 ~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~ 288 (405)
.+.+++++|... .++++++.++++.++++.+.+++++++||++++ ++++|+++.+|++...... ...+.++
T Consensus 189 ~~~~v~diMtpr-~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~-----~~~l~~~-- 260 (408)
T TIGR03520 189 GNTDTKQVMRPR-LDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK-----NFDWQSL-- 260 (408)
T ss_pred CCCEeeeeCCch-HhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC-----CCCHHHH--
Confidence 355889999532 579999999999999999999999999999864 6899999999998654321 1223443
Q ss_pred ccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCCCCCccCCCCCCCCCCCCC
Q psy744 289 HKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVPVDPD 368 (405)
Q Consensus 289 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (405)
.+++.++++++++.++++.|.+++.|.++|+|++|.++|+||.+||++.+.++...+... + ...-.
T Consensus 261 -----~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d~--~-------~~~i~ 326 (408)
T TIGR03520 261 -----LREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDD--E-------DLIYS 326 (408)
T ss_pred -----cCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCCc--C-------ccceE
Confidence 257889999999999999999999999999999999999999999999998654322110 0 11112
Q ss_pred CcCCcccccccCCccccccccCccc
Q psy744 369 LASSDDKVFEENEEPRDYVQNSCWG 393 (405)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (405)
...+....+++...++++++..++.
T Consensus 327 ~~~~~~~~v~G~~~l~~l~~~l~~~ 351 (408)
T TIGR03520 327 KIDDNNYVFEGKTSLKDFYKILKLE 351 (408)
T ss_pred EeCCCeEEEEeccCHHHHHHHhCCC
Confidence 2334556777788888888888775
No 28
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.56 E-value=1.1e-13 Score=111.98 Aligned_cols=108 Identities=19% Similarity=0.314 Sum_probs=93.3
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
++.+++++.++.++++.|.+.+++.+||++++ |+++|+++..|+++...... .. .++..+ ..++.++.+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~-~~--~~~~~~-------~~~~~~v~~ 71 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE-ED--LDLRDL-------LRPPLFVPE 71 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC-Cc--CCHHHH-------hcCCeecCC
Confidence 57889999999999999999999999999988 99999999999998775442 11 234432 246788999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+++.+.+||+|++|+++|+||+.|+++
T Consensus 72 ~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 72 STPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred CCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 999999999999999999999998899999999999975
No 29
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.55 E-value=5.7e-14 Score=136.01 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=104.6
Q ss_pred ccccccccccccCC--eeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhh
Q psy744 211 NKTLRDLKIGTYEN--VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANE 288 (405)
Q Consensus 211 ~~~v~~i~~~~~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~ 288 (405)
..+++++|. ++ +.++++++++.++++.|.+.+...+||+|++|+++|+|+..|+.+.+..+. ..+.++.++
T Consensus 196 ~~~V~~im~---~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~--~~~~~v~~i-- 268 (321)
T PRK11543 196 LNKVHHLMR---RDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGG--ALTTPVNEA-- 268 (321)
T ss_pred HhHHHHHhc---cCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCC--CcCCcHHHh--
Confidence 457888884 55 899999999999999999888899999999999999999999988665432 223446665
Q ss_pred ccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 289 HKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 289 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
|.+++.++.+++++.++++.|.+++..++||+|++|+++|+||..||+++
T Consensus 269 ----m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 269 ----MTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred ----cCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 55788899999999999999999999999999988999999999999964
No 30
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=1.6e-13 Score=111.07 Aligned_cols=110 Identities=23% Similarity=0.343 Sum_probs=95.5
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.++.++.++++.|.+.+++++||+|++|+++|+++..|+++.+.... ....++.++ |..++.++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~--~~~~~v~~~------~~~~~~~v~~~ 73 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGI--DLDTPVSEI------MTRDLVTVDPD 73 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccC--CCccCHHHh------ccCCCEEECCC
Confidence 4678899999999999999999999999998899999999999988766543 223445554 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++...+||+|++|+++|++|..|+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 74 EPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred CcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 99999999999999999999998899999999999975
No 31
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=9.4e-14 Score=114.81 Aligned_cols=113 Identities=23% Similarity=0.359 Sum_probs=95.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhcccc----------chhhhHHHhhhcccc
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYT----------NLDVTLKEANEHKTD 292 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~----------~l~~~v~~~~~~~~~ 292 (405)
++.++.++.++.++++.|.+.+...+||+|++ |+++|+++..|++..+.+.... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSI------ 75 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHH------
Confidence 56788999999999999999999999999987 9999999999999876543210 012344444
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
+..++.++++++++.++++.|.+.+.+.+||+|++|+++|+||..||+++
T Consensus 76 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 76 MTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred hcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence 44678999999999999999999999999999977999999999999863
No 32
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.55 E-value=1.1e-13 Score=113.83 Aligned_cols=113 Identities=27% Similarity=0.379 Sum_probs=95.4
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcccc--------chhhhHHHhhhccccCcc
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT--------NLDVTLKEANEHKTDWFE 295 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~--------~l~~~v~~~~~~~~~~~~ 295 (405)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+++........ ....++.++ +..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~ 75 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEV------MKT 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHh------hCC
Confidence 567899999999999999999999999999889999999999998876532111 012345554 446
Q ss_pred CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 296 GVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 296 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..||+++
T Consensus 76 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 76 DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLRL 122 (122)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhcC
Confidence 78899999999999999999999999999987999999999999863
No 33
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.55 E-value=1.2e-13 Score=116.48 Aligned_cols=111 Identities=20% Similarity=0.326 Sum_probs=94.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccc----------------------hhh
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTN----------------------LDV 281 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~----------------------l~~ 281 (405)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++......... .+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 4678999999999999999999999999999999999999999998765321111 123
Q ss_pred hHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 282 TLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 282 ~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++.++ |..++..+.+++++.++++.|.+++.+++||+++ |+++|+||..||++
T Consensus 82 ~v~~~------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 82 VAEDI------MTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cHHHh------cCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 45554 5567889999999999999999999999999985 99999999999986
No 34
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=99.54 E-value=5.8e-14 Score=131.84 Aligned_cols=170 Identities=18% Similarity=0.244 Sum_probs=138.5
Q ss_pred cccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhh
Q psy744 210 LNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANE 288 (405)
Q Consensus 210 ~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~ 288 (405)
.+.+|+++|+.+ .++..+..+++.+++.+.+....+.++|+..++ +.++|++..+|+++++.+... ..-.++++
T Consensus 198 e~~tV~DIMvpR-~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~----~~k~d~~~ 272 (423)
T COG4536 198 ENLTVSDIMVPR-NEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE----FTKEDILR 272 (423)
T ss_pred ccceeeeeeccc-cceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc----ccHhHHHH
Confidence 455899999865 789999999999999999999999999999654 569999999999999987742 12223322
Q ss_pred ccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCCCCCccCCCCCCCCCCCCC
Q psy744 289 HKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVPVDPD 368 (405)
Q Consensus 289 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (405)
....++++++++++.+.+..|.+++-|...||||+|.+.|+||.+||++.++++...+ .+.......
T Consensus 273 ----~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde---------~d~~~~ev~ 339 (423)
T COG4536 273 ----AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDE---------HDTLAKEVI 339 (423)
T ss_pred ----HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhcccccc---------Ccccchhhc
Confidence 2357899999999999999999999999999999999999999999999999544321 222233455
Q ss_pred CcCCcccccccCCccccccccCcccccccc
Q psy744 369 LASSDDKVFEENEEPRDYVQNSCWGEVPVS 398 (405)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (405)
..++..-+.+++..+||+|++.+|. +|=-
T Consensus 340 ~q~dgs~iidGs~~iRdlNr~l~W~-Lp~e 368 (423)
T COG4536 340 PQSDGSFIIDGSANVRDLNRALDWN-LPDE 368 (423)
T ss_pred ccCCCcEEEeCCCcHHHHHHhcCCC-CCCC
Confidence 6677888999999999999999995 5533
No 35
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=1.7e-13 Score=110.90 Aligned_cols=109 Identities=23% Similarity=0.359 Sum_probs=93.6
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.++.++.++++.|.+.+++.+||+|++|+++|+++..|++........ .+.++.++ |..++.++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~--~~~~v~~~------~~~~~~~v~~~ 73 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF--LEKKVFNI------VSQDVFYVNEE 73 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc--ccCcHHHH------hcCCcEEEcCC
Confidence 56789999999999999999999999999988999999999999876543211 13345554 45788899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+.+||+|+ |+++|+||..||++
T Consensus 74 ~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 74 DTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred CcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 99999999999999999999996 99999999999874
No 36
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.54 E-value=9.6e-14 Score=134.73 Aligned_cols=123 Identities=16% Similarity=0.218 Sum_probs=102.8
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHK 290 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~ 290 (405)
..+++++|.. .++++++.+++++.++++.|.+++.+.+||+|++|+++|+||..|+.+....+. ...+.++.++
T Consensus 201 ~~~V~dim~~-~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~-~~~~~~v~~i---- 274 (326)
T PRK10892 201 LLRVSDIMHT-GDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI-DLRQASIADV---- 274 (326)
T ss_pred cCcHHHHhCC-CCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC-CcccCCHHHh----
Confidence 3467888831 028899999999999999999988888888998999999999999987655331 1113456666
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
|.+++.++.+++++.+|++.|.+++++++||+| +|+++|+||..||+++
T Consensus 275 --m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 275 --MTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred --cCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 557889999999999999999999999999998 6899999999999974
No 37
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.54 E-value=1.7e-13 Score=109.79 Aligned_cols=104 Identities=18% Similarity=0.213 Sum_probs=90.3
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.++.++.++++.|.+.+.+.+||+|++|+++|+++..|+++... .++.++ |.+.+.++.++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~--------~~~~~~------~~~~~~~~~~~ 67 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG--------GCCGDH------AEPFKVTVSVD 67 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc--------cchhhh------cccCCEEECCC
Confidence 5678999999999999999999999999998899999999999986421 123333 44567789999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 68 DDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred CCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999999999998899999999999975
No 38
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.53 E-value=1.7e-13 Score=111.08 Aligned_cols=111 Identities=21% Similarity=0.297 Sum_probs=93.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.++.++.++++.|.+.+.+.+||+|+ |+++|+++..|++.............++.++ |..++.++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i------~~~~~~~v~~~ 74 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDPESTLVERV------MTPNPVCATSD 74 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHh------cCCCCeEEcCC
Confidence 5678999999999999999889999999997 9999999999998654433211112455555 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+++||+|++|+++|+||..||+.
T Consensus 75 ~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 75 TPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 99999999999999999999998899999999999975
No 39
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=1.3e-13 Score=111.95 Aligned_cols=111 Identities=24% Similarity=0.410 Sum_probs=94.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcccc-chhhhHHHhhhccccCccCceEecC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT-NLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~-~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
++.++.++.++.++++.|.+.+.+.+||+|++|+++|+++..|+++.+....+. ....++.++ |..++.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~------~~~~~~~v~~ 75 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDI------MTTEVLTVSP 75 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHH------hccCceEECC
Confidence 567899999999999999988888999999999999999999999866543211 123445555 4467889999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+++.+.+||+|+ |+++|+||..||++
T Consensus 76 ~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 76 DDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred CCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 999999999999999999999996 99999999999986
No 40
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.53 E-value=2.9e-13 Score=109.77 Aligned_cols=111 Identities=24% Similarity=0.331 Sum_probs=93.6
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++....... ....++.++ |..++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~-~~~~~i~~~------~~~~~~~v~~~ 74 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE-LKDAKVREV------MNSPVITIDAN 74 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh-hcCCcHHHh------ccCCceEECCC
Confidence 35788999999999999999999999999988999999999999875433211 112345554 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+.+||+|++|+++|+||..||++
T Consensus 75 ~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 75 DSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred CcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 99999999999999999999998899999999999974
No 41
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.52 E-value=1.2e-13 Score=111.31 Aligned_cols=106 Identities=20% Similarity=0.268 Sum_probs=92.9
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
.++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|++... ...++.++ |..++.++.+
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------~~~~v~~~------~~~~~~~v~~ 68 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD-------PDTTIEKV------MTKNPITVNP 68 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc-------ccccHHHH------hcCCCeEECC
Confidence 3678899999999999999999989999999999999999999997531 12345555 4467889999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 69 ~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 69 KTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred CCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 999999999999999999999998899999999999985
No 42
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.52 E-value=4e-13 Score=108.39 Aligned_cols=108 Identities=24% Similarity=0.373 Sum_probs=93.4
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+++++||+|+ |+++|+++..|+++....+. . ..++.++ +..++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~-~--~~~v~~~------~~~~~~~v~~~ 71 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGL-E--LAKVKDV------MTKDVITIDED 71 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccc-c--ccCHHHH------hcCCceEECCC
Confidence 5678999999999999999999999999998 99999999999998765431 1 1345554 34678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 72 EQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred CCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 99999999999999999999998899999999999975
No 43
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=2.3e-13 Score=113.06 Aligned_cols=112 Identities=21% Similarity=0.303 Sum_probs=89.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH-----HHhccccchhhhHHHhhhccccCccCce
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINL-----AAEKTYTNLDVTLKEANEHKTDWFEGVE 298 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~-----~~~~~~~~l~~~v~~~~~~~~~~~~~~~ 298 (405)
++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+.+. ...+.....+.++.++| .++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im------~~~~~ 75 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVM------TPKED 75 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhc------Cchhh
Confidence 46789999999999999998999999999988999999999999862 22210112234566654 33332
Q ss_pred E--e----cCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHH
Q psy744 299 K--C----LLDETLFTVMERIVRAEVHRLVVVDED-DHVLGVLSLSDILV 341 (405)
Q Consensus 299 ~--v----~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiIt~~DIl~ 341 (405)
. + .+++++.++++.|.+++.+.+||+|++ |+++|+||++||++
T Consensus 76 ~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 76 LKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred hccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 2 2 368999999999999999999999976 79999999999986
No 44
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.52 E-value=3e-13 Score=110.11 Aligned_cols=110 Identities=20% Similarity=0.343 Sum_probs=90.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcC-CCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 224 NVETVAEETSIIHALRKFLERR-VSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
++.++.++.++.++++.|.+.+ ...++|+| +|+++|+++..|+++...... ...+.++.++ |..++.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~-~~~~~~i~~~------~~~~~~~v~~ 73 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGK-DLSDLPIGEV------MTQPVVTLQE 73 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCC-CccccCHHHh------cCCCcEEEec
Confidence 4678899999999999998888 66777777 589999999999998665431 1112445555 4467788888
Q ss_pred C--CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 D--ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~--~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+ +++.++++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus 74 ~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 74 SEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 7 78999999999999999999998899999999999986
No 45
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.52 E-value=2.6e-13 Score=110.01 Aligned_cols=111 Identities=23% Similarity=0.326 Sum_probs=95.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+........ -..++.++ |..++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~-~~~~v~~~------~~~~~~~v~~~ 74 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLY-DLVVASDI------MTKPPVVVYPE 74 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccccc-ccEEHHHh------ccCCCcEEcCC
Confidence 577899999999999999999999999999889999999999998866543211 11455555 45778999999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDE-DDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+.+.+.+||+|+ +|+++|++|..||+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 75 DSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred CCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 99999999999999999999997 799999999999975
No 46
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.52 E-value=1.8e-13 Score=108.77 Aligned_cols=95 Identities=52% Similarity=0.774 Sum_probs=85.0
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++++++++.+|++.|.+++++++||+|++.++++|++|..|+++.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------ 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------ 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence 68999999999999999999999999999975478999999999873110
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
+.++.+++++.+|++.|.+++++++||+|++
T Consensus 52 -------------------------------------------------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 82 (98)
T cd04618 52 -------------------------------------------------LVSIHPERSLFDAALLLLKNKIHRLPVIDPS 82 (98)
T ss_pred -------------------------------------------------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECC
Confidence 5678999999999999999999999999987
Q ss_pred -CcEEEEEeHHHHHH
Q psy744 256 -GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 -g~lvGivt~~Dl~~ 269 (405)
|+++|++|.+|++.
T Consensus 83 ~~~~~giit~~d~~~ 97 (98)
T cd04618 83 TGTGLYILTSRRILK 97 (98)
T ss_pred CCCceEEeehhhhhc
Confidence 99999999999874
No 47
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=3e-13 Score=112.49 Aligned_cols=113 Identities=26% Similarity=0.435 Sum_probs=92.8
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccc------------cchhhhHHHhhhccc
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTY------------TNLDVTLKEANEHKT 291 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~------------~~l~~~v~~~~~~~~ 291 (405)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+...+..... .....++.++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 76 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDA----- 76 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHH-----
Confidence 56788999999999999999999999999998999999999999876432110 0112234444
Q ss_pred cCccCceEecCCCCHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEeHHHHHHH
Q psy744 292 DWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVD--EDDHVLGVLSLSDILVY 342 (405)
Q Consensus 292 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGiIt~~DIl~~ 342 (405)
|..+++++.+++++.++++.|.+.+.+.+||++ ++|+++|+||.+||+++
T Consensus 77 -~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~ 128 (128)
T cd04632 77 -MSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred -hcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence 557888999999999999999999999999984 46999999999999863
No 48
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.51 E-value=3.3e-13 Score=109.47 Aligned_cols=111 Identities=22% Similarity=0.307 Sum_probs=94.7
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.++.++.++++.|.+.+.+.+||+|++|+++|+++..++++.+.... .....++.++ |..++.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~-~~~~~~v~~~------~~~~~~~v~~~ 75 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL-DILTLPVADV------MTRNPKTIDPD 75 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC-ccccCCHHHh------hccCCeEECCC
Confidence 5677899999999999998888899999998899999999999998776432 1112346665 44677899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+.+||+|++|+++|+||..||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 76 ALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred CcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 99999999999999999999998899999999999986
No 49
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.51 E-value=5.2e-13 Score=107.35 Aligned_cols=107 Identities=21% Similarity=0.338 Sum_probs=92.9
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
.++.++.++.++.++++.|.+.++.++||+|++|+++|+++..|+++..... .++.++ |...+.++++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~------~~v~~~------~~~~~~~v~~ 69 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKEA------KSLEDI------MLEDVFTVQP 69 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhcC------CcHhHh------hcCCceEECC
Confidence 4677899999999999999999999999999889999999999998754322 234444 4467889999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+++.+++||+|++|+++|+||.+|+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 70 DASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred CCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 999999999999999999999998899999999999975
No 50
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.51 E-value=4.1e-13 Score=108.33 Aligned_cols=109 Identities=28% Similarity=0.398 Sum_probs=93.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+.+........ ...+.+. |..++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~--~~~~~~~------~~~~~~~v~~~ 72 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREA--TVLVGDV------MTRDPVTASPD 72 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCccc--ccCHHHh------ccCCCeEECCC
Confidence 5678999999999999999888999999998 9999999999998766543211 1123333 56788999999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+.+||+|++|+++|+||..||++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 73 ETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred CCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 99999999999999999999998899999999999986
No 51
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=3.2e-13 Score=113.09 Aligned_cols=112 Identities=24% Similarity=0.337 Sum_probs=93.6
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchh-------------------hhHH
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLD-------------------VTLK 284 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~-------------------~~v~ 284 (405)
++.++.+++++.++++.|.+.+++++||+|++|+++|+++..|+++........... .++.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence 567899999999999999988999999999989999999999999876543211000 1333
Q ss_pred HhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 285 EANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 285 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
++ |.+++..+.+++++.++++.|.+.+.+.+||+|+ |+++|+||..|++++
T Consensus 82 ~~------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 82 EI------MTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIRS 132 (132)
T ss_pred Hh------ccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhcC
Confidence 33 4577889999999999999999999999999997 999999999999863
No 52
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.51 E-value=2.1e-13 Score=114.68 Aligned_cols=112 Identities=29% Similarity=0.377 Sum_probs=93.6
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccc---------------------cchhh
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTY---------------------TNLDV 281 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~---------------------~~l~~ 281 (405)
+++.++.++.++.++++.|.+.++.++||+|++|+++|+++..|+.+....... .....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 467889999999999999999999999999988999999999999876543210 00112
Q ss_pred hHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 282 TLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 282 ~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++.++ |..++.++.+++++.++++.|.+.+.+++||+| +|+++|+||..|+++
T Consensus 82 ~v~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 82 KVADV------MTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred CHHHH------hCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 23333 556788999999999999999999999999999 899999999999985
No 53
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=2.9e-13 Score=111.37 Aligned_cols=112 Identities=22% Similarity=0.383 Sum_probs=93.1
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcc-cc-------chhhhHHHhhhccccCcc
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKT-YT-------NLDVTLKEANEHKTDWFE 295 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~-~~-------~l~~~v~~~~~~~~~~~~ 295 (405)
++.++.+++++.++++.|.+.+++++||+|++|+++|+++..|+++...... .. ....++.++ |..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 75 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKI------MST 75 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHH------hcC
Confidence 5678999999999999999999999999998899999999999987532110 00 012234444 446
Q ss_pred CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 296 GVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 296 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++.++.+++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 76 ~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 76 PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 7889999999999999999999999999998899999999999986
No 54
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=5.8e-13 Score=107.81 Aligned_cols=110 Identities=25% Similarity=0.318 Sum_probs=90.7
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+...++|.+ +|+++|+++..|+++............++.++ |..++.++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~------~~~~~~~v~~~ 74 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGAGVLDTTVRAI------MNPEPIVASPD 74 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHH------hCCCCeEECCC
Confidence 467899999999999999888887777776 59999999999999876542111123456665 44667899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++..++||+| +|+++|+||.+||++
T Consensus 75 ~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 75 DSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred CCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 9999999999999999999998 699999999999986
No 55
>PRK11573 hypothetical protein; Provisional
Probab=99.50 E-value=4.3e-13 Score=133.45 Aligned_cols=171 Identities=13% Similarity=0.168 Sum_probs=131.2
Q ss_pred ccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhh
Q psy744 209 FLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEAN 287 (405)
Q Consensus 209 ~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~ 287 (405)
+.+.+++++|... .++++++.+.++.++++.+.+++++++||++++ +.++|++..+|++.....+. .. ....+.
T Consensus 184 l~~~~v~eiMtPr-~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~--~~--~~~~l~ 258 (413)
T PRK11573 184 LEKVTVDDIMVPR-NEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK--EF--TKENML 258 (413)
T ss_pred cCCCChhhcCCcc-ceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC--cC--CHHHHH
Confidence 3456899999765 789999999999999999999999999999764 78999999999997654321 11 112221
Q ss_pred hccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCCCCCccCCCCCCCCCCCC
Q psy744 288 EHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVPVDP 367 (405)
Q Consensus 288 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~~~~~~~~~~~~~~~~~~~~~ 367 (405)
+ ..+++.+++++.++.++++.|.+++.|-..|+||+|...|+||..||++.++++-..+... ......
T Consensus 259 ~----~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~d~--------~~~~~i 326 (413)
T PRK11573 259 R----AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMSP--------TLAEEV 326 (413)
T ss_pred h----hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcccCc--------ccccce
Confidence 1 3368899999999999999999999999999999999999999999999999765433211 001112
Q ss_pred CCcCCcccccccCCccccccccCccccccc
Q psy744 368 DLASSDDKVFEENEEPRDYVQNSCWGEVPV 397 (405)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (405)
....+..-.+++..+++++++..++. +|-
T Consensus 327 ~~~~~~~~~v~G~~~l~d~~~~l~~~-l~~ 355 (413)
T PRK11573 327 TPQNDGSVIIDGTANVREINKAFNWH-LPE 355 (413)
T ss_pred EEecCCEEEEEeeeEHHHHHHHhCCC-CCC
Confidence 22334456778888899998888774 563
No 56
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.50 E-value=6.7e-13 Score=107.09 Aligned_cols=109 Identities=28% Similarity=0.435 Sum_probs=93.8
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.++.++.++++.|.+.+...+||+|+ |+++|+++..|+++...... . ...++.++ |..++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~-~-~~~~v~~~------~~~~~~~~~~~ 72 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGP-D-LQTPVGEV------MSSPLLTVPAD 72 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCC-C-CCcCHHHh------cCCCceEECCC
Confidence 4678899999999999999888999999987 89999999999998775432 1 23455555 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+.+.+.+||+|++|+++|+||.+||++
T Consensus 73 ~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 73 TSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 99999999999999999999998899999999999975
No 57
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.50 E-value=6.2e-13 Score=107.55 Aligned_cols=110 Identities=25% Similarity=0.286 Sum_probs=93.3
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
+++++.++.++.++++.|.+.+...++|+|+ |+++|+++..|+++....... ..+.++.++ |..++..++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~-~~~~~i~~~------~~~~~~~v~~~ 73 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGL-PSSTPVGEI------ATFPLITVDPD 73 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCC-CCCCCHHHH------hCCCcEEECCC
Confidence 4678899999999999999999999999998 899999999999987654321 224456665 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
+++.++++.|.+++.+.+||+| +|+++|+||..|++++
T Consensus 74 ~~l~~~~~~~~~~~~~~~~Vv~-~~~~~G~it~~dl~~~ 111 (111)
T cd04589 74 DFLFNALLLMTRHRIHRVVVRE-GGEVVGVLEQTDLLSF 111 (111)
T ss_pred CcHHHHHHHHHHhCccEEEEee-CCEEEEEEEhHHhhcC
Confidence 9999999999999999999998 5999999999999863
No 58
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.50 E-value=5.9e-13 Score=107.88 Aligned_cols=111 Identities=28% Similarity=0.381 Sum_probs=91.9
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+.+++||+|+ |+++|+++..|++.............++.++ |...+.++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~ 74 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDV------MTRGVVTVTED 74 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHh------ccCCccEECCC
Confidence 5678999999999999999999999999997 9999999999987432222111112235555 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+.+.+++||+|++|+++|+||..|+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 75 DDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999999999997899999999999975
No 59
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.50 E-value=1.7e-13 Score=134.81 Aligned_cols=128 Identities=26% Similarity=0.338 Sum_probs=112.9
Q ss_pred ccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHh
Q psy744 207 PSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286 (405)
Q Consensus 207 ~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~ 286 (405)
..+....+.+++ ..++++|++.+++.+|.+.|.+.|++.+.++++++...||||.+|+........ .+...+++++
T Consensus 144 ~e~~~trv~~~~---~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g-~~~~~~V~ev 219 (610)
T COG2905 144 SEFILTRVGEVK---TLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADG-RSKTQKVSEV 219 (610)
T ss_pred chHHHHHHHHHh---cCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcC-CCcccchhhh
Confidence 345555677777 488999999999999999999999999999999999999999999998887652 2456677776
Q ss_pred hhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 287 NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 287 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
|+.++++++.++.+.+|+-.|.+++++++||++ +|+++|+||..||++.+..
T Consensus 220 ------mT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 220 ------MTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred ------hccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence 678999999999999999999999999999997 8999999999999998864
No 60
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.50 E-value=6.7e-13 Score=107.15 Aligned_cols=108 Identities=27% Similarity=0.361 Sum_probs=93.6
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
+++.++..+.++.++.+.|.+.+++++||+|+ |+++|+++..|+.+..... + ...++.++ |..++.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~-~--~~~~~~~~------~~~~~~~v~~ 71 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHG-L--GHAPVKDY------MSTDVVTVPP 71 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcc-c--ccCcHHHH------hcCCCEEECC
Confidence 46788999999999999999889999999998 9999999999998766433 1 23456665 4467889999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+++.+.+||+| +|+++|+||..|+++
T Consensus 72 ~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 72 DTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred CCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 99999999999999999999998 899999999999975
No 61
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=6.4e-13 Score=109.39 Aligned_cols=112 Identities=17% Similarity=0.248 Sum_probs=93.5
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccc---------cchhhhHHHhhhccccCc
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTY---------TNLDVTLKEANEHKTDWF 294 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~---------~~l~~~v~~~~~~~~~~~ 294 (405)
++.++.++.++.++++.|.+.+++++||+|+ |+++|+++..|+.+.+..... .....++.++ |.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 74 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQI------MT 74 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHh------hc
Confidence 5678999999999999999999999999997 999999999999876543110 0012234443 55
Q ss_pred cCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 295 EGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 295 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
.+++++.+++++.++++.|.+++...+||+|++|+++|++|+.|++++
T Consensus 75 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~~ 122 (122)
T cd04637 75 RDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLKY 122 (122)
T ss_pred CCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhhC
Confidence 788899999999999999999999999999988999999999999864
No 62
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.48 E-value=7.6e-13 Score=108.47 Aligned_cols=111 Identities=24% Similarity=0.347 Sum_probs=92.9
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccch---------hhhHHHhhhccccCc
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNL---------DVTLKEANEHKTDWF 294 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l---------~~~v~~~~~~~~~~~ 294 (405)
++.++.++.++.++++.|.+.++..+||+|+ |+++|+++..|+............ ..++.++ |.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 74 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDI------MT 74 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHh------cc
Confidence 5678999999999999999999999999997 999999999999987643211000 1223333 55
Q ss_pred cCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 295 EGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 295 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..||++
T Consensus 75 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 75 RDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 67889999999999999999999999999997799999999999986
No 63
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.48 E-value=1.1e-12 Score=106.02 Aligned_cols=109 Identities=29% Similarity=0.386 Sum_probs=92.5
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++..+.++.++.+.|.+.+++.+||+|+ |+++|+++..|+++....... ....++.++ |..++.++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~-~~~~~i~~~------~~~~~~~v~~~ 73 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGL-DPDTPVSEV------MTAPPITIPPD 73 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCC-CccCCHHHH------hCCCCeEECCC
Confidence 5678999999999999999888999999997 999999999999875443311 122445555 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+++||+++ |+++|++|..||++
T Consensus 74 ~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 74 ATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred CcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 99999999999999999999986 99999999999985
No 64
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.48 E-value=1.3e-12 Score=105.76 Aligned_cols=110 Identities=22% Similarity=0.336 Sum_probs=92.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.++.++.++++.|.+.+.+.+||+|+ ++++|+++..|+++............++.++ |..++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~ 74 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKPREVPVGEV------MSTPLITIDPN 74 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCcccCCHHHh------cCCCcEEECCC
Confidence 5678899999999999999989999999996 4999999999999866433211223445555 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+.+||+|+ ++++|+||..|+++
T Consensus 75 ~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~di~~ 111 (112)
T cd04802 75 ASLNEAAKLMAKHGIKRLPVVDD-DELVGIVTTTDIVM 111 (112)
T ss_pred CCHHHHHHHHHHcCCCeeEEeeC-CEEEEEEEhhhhhc
Confidence 99999999999999999999985 49999999999975
No 65
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.48 E-value=5.8e-13 Score=134.06 Aligned_cols=119 Identities=20% Similarity=0.265 Sum_probs=103.4
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
++.++| .++++++.+++++.++++.|.+++++.+||+|++++++|+||.+|+... . ...++.++
T Consensus 90 Kv~~iM---i~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~---~----~~~~V~di------ 153 (479)
T PRK07807 90 KSRDLV---FDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV---D----RFTQVRDV------ 153 (479)
T ss_pred cccccc---ccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC---c----cCCCHHHh------
Confidence 455666 3789999999999999999999999999999999999999999998532 1 12346665
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
|..++.++++++++.+|++.|.+++.+.+||+|++|+++|+||.+||++.....+
T Consensus 154 Mt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~ 208 (479)
T PRK07807 154 MSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTP 208 (479)
T ss_pred ccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCc
Confidence 5678999999999999999999999999999998899999999999999887543
No 66
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=7.3e-13 Score=106.92 Aligned_cols=103 Identities=19% Similarity=0.290 Sum_probs=87.5
Q ss_pred EcCCCCHHHHHHHHHhcC-----CCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 228 VAEETSIIHALRKFLERR-----VSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 228 v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
+.+++++.++++.|.+++ +..+||+|++|+++|+++.+|+++.. .+.++.++ +..++.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~-------~~~~v~~~------~~~~~~~i~~ 68 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD-------PDTPVSDI------MDTDVISVSA 68 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC-------CcchHHHH------hCCCCeEEcC
Confidence 568899999999998777 46899999889999999999997521 13345554 4467889999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
++++.++++.|.+++.+.+||+|++|+++|+||..||++++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 69 DDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDVI 109 (109)
T ss_pred CCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhhC
Confidence 99999999999999999999999889999999999999764
No 67
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=8.2e-13 Score=108.50 Aligned_cols=111 Identities=24% Similarity=0.364 Sum_probs=92.3
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccc---------hhhhHHHhhhccccCc
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTN---------LDVTLKEANEHKTDWF 294 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~---------l~~~v~~~~~~~~~~~ 294 (405)
++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+++......... ...++.++ |.
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 74 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDI------MT 74 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHH------cc
Confidence 5678999999999999999999999999997 99999999999987655321100 12234443 45
Q ss_pred cCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 295 EGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 295 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
.++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+||..|++++
T Consensus 75 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 75 RPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILRY 121 (121)
T ss_pred CCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhcC
Confidence 67889999999999999999999999999996 999999999999863
No 68
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.46 E-value=1.1e-12 Score=105.59 Aligned_cols=109 Identities=26% Similarity=0.401 Sum_probs=90.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+.+...... .....++.++ |..++.+++++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~-~~~~~~~~~~------~~~~~~~v~~~ 73 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGK-AKFSLPVREV------MGEPLPTVDPD 73 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccc-cccCcCHHHH------hcCCCceeCCC
Confidence 4678899999999999999999999999997 99999999999998765432 1123445555 44677889999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
+++.++++.|.+ .. .+||++++|+++|+||.+||+++
T Consensus 74 ~~l~~~~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 74 APIEELSELLDR-GN-VAVVVDEGGKFVGIITRADLLKY 110 (110)
T ss_pred CcHHHHHHHHHh-CC-ceeEEecCCeEEEEEeHHHhhcC
Confidence 999999999988 33 47889888999999999999864
No 69
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=2e-12 Score=106.28 Aligned_cols=117 Identities=18% Similarity=0.232 Sum_probs=91.7
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhC-CCCCCHHHHhhccHHHHHHhcCCCE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYT-SSSITMEELEEHKLETNLIDYKIHR 174 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~-~~~~~~~~l~~~~i~~~l~~~~i~~ 174 (405)
++++++++.++.+|++.|.++++..+||+|++ ++++|++|..|++..+..... .......+
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~----------------- 63 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDEN-GKVVDVYSRFDVINLAKEGAYNNLDLTVGE----------------- 63 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-CeEEEEEeHHHHHHHHhcCccccccCCHHH-----------------
Confidence 57899999999999999999999999999986 899999999999965432110 00000000
Q ss_pred EEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC
Q psy744 175 LPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS 254 (405)
Q Consensus 175 lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 254 (405)
++ .....| ..++.++.+++++.++++.|.+++.+.+||+|+
T Consensus 64 ---------------------~~---------------~~~~~~---~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~ 104 (120)
T cd04641 64 ---------------------AL---------------ERRSQD---FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE 104 (120)
T ss_pred ---------------------HH---------------hhcccC---CCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC
Confidence 00 011222 256789999999999999999999999999998
Q ss_pred CCcEEEEEeHHHHHH
Q psy744 255 EGHLVDIFAKFDVIN 269 (405)
Q Consensus 255 ~g~lvGivt~~Dl~~ 269 (405)
+|+++|+||.+|+++
T Consensus 105 ~~~~~Givt~~di~~ 119 (120)
T cd04641 105 NKRVEGIISLSDILQ 119 (120)
T ss_pred CCCEEEEEEHHHhhc
Confidence 899999999999874
No 70
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.45 E-value=1.1e-12 Score=130.39 Aligned_cols=172 Identities=14% Similarity=0.146 Sum_probs=131.5
Q ss_pred cchhHHHHHHhh--hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhC
Q psy744 72 DGGNQIFVKFFK--FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYT 149 (405)
Q Consensus 72 ~~~~~~~~~~l~--~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~ 149 (405)
+.+.+.+++-|. .+++.|+|..-.++++++.+.++.++++.|.++++..+||++++.++++|+++.+|++.++..
T Consensus 176 ~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~--- 252 (408)
T TIGR03520 176 KEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK--- 252 (408)
T ss_pred hHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc---
Confidence 345566666544 669999997777899999999999999999999999999999866799999999999843210
Q ss_pred CCCCCHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEc
Q psy744 150 SSSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVA 229 (405)
Q Consensus 150 ~~~~~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~ 229 (405)
. ...+.+++ +++.+++
T Consensus 253 -~-----------------------------------------------------------~~~l~~~~----~~~~~Vp 268 (408)
T TIGR03520 253 -K-----------------------------------------------------------NFDWQSLL----REPYFVP 268 (408)
T ss_pred -C-----------------------------------------------------------CCCHHHHc----CCCeEeC
Confidence 0 00223333 5788999
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCCHHHH
Q psy744 230 EETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTV 309 (405)
Q Consensus 230 ~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a 309 (405)
+++++.++++.|.+++.+.++|+|+.|.++|+||.+|++..+.....+..+.. .+.+. ......+.++...++.++
T Consensus 269 e~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d~~-~~~i~---~~~~~~~~v~G~~~l~~l 344 (408)
T TIGR03520 269 ENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDE-DLIYS---KIDDNNYVFEGKTSLKDF 344 (408)
T ss_pred CCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCCcC-ccceE---EeCCCeEEEEeccCHHHH
Confidence 99999999999999999999999999999999999999999876543322211 11110 012455778888999888
Q ss_pred HHHHH
Q psy744 310 MERIV 314 (405)
Q Consensus 310 ~~~m~ 314 (405)
.+.|-
T Consensus 345 ~~~l~ 349 (408)
T TIGR03520 345 YKILK 349 (408)
T ss_pred HHHhC
Confidence 88873
No 71
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.45 E-value=1e-12 Score=136.96 Aligned_cols=127 Identities=21% Similarity=0.203 Sum_probs=106.1
Q ss_pred ccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhh
Q psy744 209 FLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANE 288 (405)
Q Consensus 209 ~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~ 288 (405)
+...+++++| .+++.++++++++.++.+.|.+++.+.+||+|++|+++|+++.+|+.+...... ...+.++.++
T Consensus 444 L~~~~V~dim---~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~-~~~~~~v~di-- 517 (574)
T PRK01862 444 LRTTQMRELI---QPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR-DTTDKTAADY-- 517 (574)
T ss_pred HhhCcHHHHh---cCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc-ccccchHHHh--
Confidence 3345788887 367889999999999999999999999999999999999999999988654331 1112345555
Q ss_pred ccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC--CcEEEEEeHHHHHHHHHh
Q psy744 289 HKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDED--DHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 289 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiIt~~DIl~~l~~ 345 (405)
|.+++.++++++++.++++.|.+++.+.+||+|++ |+++|+||++|+++++.+
T Consensus 518 ----m~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 518 ----AHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred ----ccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 55788899999999999999999999999999876 589999999999999863
No 72
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.45 E-value=1.2e-12 Score=105.33 Aligned_cols=107 Identities=24% Similarity=0.351 Sum_probs=90.3
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
+++.++..+.++.++++.|.+.+.+.+||+|++|+++|+++..|+++... ...++.+++ ...+..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~------~~~~v~~~~------~~~~~~~~~ 69 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD------LDKPVSEVM------TPENLLTTV 69 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc------CCCCHHHhc------ccCceEEec
Confidence 46788999999999999999999999999998899999999999864321 133455553 345566666
Q ss_pred -CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 -DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 -~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 70 EGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred CCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 999999999999999999999998899999999999985
No 73
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=1.7e-12 Score=104.08 Aligned_cols=105 Identities=20% Similarity=0.400 Sum_probs=90.7
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
+++.++..+.++.++++.|.+.+.+.+||+|+ ++++|+++..|++... ...++.++ |...+.++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~-------~~~~~~~~------~~~~~~~v~~ 67 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD-------PDETVEEI------MSKDLVVAVP 67 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC-------ccccHHHh------CCCCCeEECC
Confidence 46788999999999999998888889999997 9999999999997531 12345555 4467888999
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++++.++++.|.+++.+++||+|++|+++|+|+..||++
T Consensus 68 ~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 68 EMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred CCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 999999999999999999999998899999999999985
No 74
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.45 E-value=1.8e-12 Score=105.50 Aligned_cols=107 Identities=18% Similarity=0.260 Sum_probs=89.3
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceE
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDS---EGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEK 299 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~ 299 (405)
.++.++.+++++.++++.|.+.+...+||+|+ +|+++|+++..|++.... . ..++.++ |.....+
T Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~-----~~~v~~~------~~~~~~~ 69 (114)
T cd04602 2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-S-----ETPLSEV------MTPREVL 69 (114)
T ss_pred CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-c-----CCCHHHh------cCCCceE
Confidence 35678899999999999999889899999997 789999999999875321 1 1235555 4455566
Q ss_pred ecC--CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 300 CLL--DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 300 v~~--~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+.. ++++.++++.|.+++.+.+||+|++|+++|+||.+||++
T Consensus 70 ~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 70 VVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred EECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 655 999999999999999999999998899999999999875
No 75
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.44 E-value=8e-13 Score=133.81 Aligned_cols=122 Identities=17% Similarity=0.173 Sum_probs=101.3
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS---EGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEH 289 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~ 289 (405)
.++++|.+......++.+++++.++++.|.+++++.+||+|+ +|+++|+||..|+.... ...+.++.++|.
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-----~~~~~~V~dIMt- 168 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-----MSLDTKVKDFMT- 168 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc-----cCCCCCHHHHhC-
Confidence 455555433345579999999999999999999999999996 58999999999996421 133566777753
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
..++++++.+++++.+|+++|.++++..|||+|++|+++|+||.+||++..
T Consensus 169 ---~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 169 ---PFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred ---CCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 113788999999999999999999999999999889999999999999965
No 76
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.42 E-value=1.4e-12 Score=108.37 Aligned_cols=122 Identities=20% Similarity=0.264 Sum_probs=101.9
Q ss_pred hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccH
Q psy744 84 FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKL 163 (405)
Q Consensus 84 ~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i 163 (405)
..+|.++| +++++++.++.++.+|+++|.++|+.-+||+++ ++++|-+|..|+.+.+.... +
T Consensus 64 ~ita~~iM--~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~~-------e------- 125 (187)
T COG3620 64 RITAKTIM--HSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEGM-------E------- 125 (187)
T ss_pred eEeHhhhc--cCCeeEECchhhHHHHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhccc-------c-------
Confidence 45899999 899999999999999999999999999999999 79999999999997766432 1
Q ss_pred HHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHh
Q psy744 164 ETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 164 ~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~ 243 (405)
.....+++++| ...+.+|+++.++..+-+++.+
T Consensus 126 --------------------------------------------~i~~~~vr~vM---~e~fP~Vs~~~~l~vI~~LL~~ 158 (187)
T COG3620 126 --------------------------------------------SIRSLRVREVM---GEPFPTVSPDESLNVISQLLEE 158 (187)
T ss_pred --------------------------------------------chhhhhHHHHh---cCCCCcCCCCCCHHHHHHHHhh
Confidence 11144677788 4788999999999877777654
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
+ .++.|+ ++|+++||||..|+++.+.+
T Consensus 159 ~--~AVlV~-e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 159 H--PAVLVV-ENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred C--CeEEEE-eCCceEEEEeHHHHHHHHhc
Confidence 4 577788 58999999999999987654
No 77
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=2e-12 Score=103.22 Aligned_cols=103 Identities=21% Similarity=0.327 Sum_probs=89.0
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.+++++.++++.|.+.+...+||+| +|+++|+++..|+++... ..++.++ |..++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~-------~~~~~~~------~~~~~~~v~~~ 67 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP-------NRLVADA------MTREVVTISPE 67 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc-------cCCHHHH------ccCCCEEECCC
Confidence 567889999999999999988989999998 589999999999986431 2234554 44678899999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++...+||+|+ |+++|+||..|++.
T Consensus 68 ~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 68 ASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred CCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 99999999999999999999996 99999999999873
No 78
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.42 E-value=6.1e-12 Score=119.60 Aligned_cols=194 Identities=10% Similarity=0.153 Sum_probs=139.9
Q ss_pred chhHHHHHH--hhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCC
Q psy744 73 GGNQIFVKF--FKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTS 150 (405)
Q Consensus 73 ~~~~~~~~~--l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~ 150 (405)
.+.+.+++. |..+++.|+|..-.++++++.+.++.++++.+.+++...+||++.+.++++|+++..|++..+... .
T Consensus 53 ~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~--~ 130 (292)
T PRK15094 53 DTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSD--A 130 (292)
T ss_pred HHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhcc--C
Confidence 445566655 345699999966568999999999999999999999999999987657899999999998543210 0
Q ss_pred CCCCHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcC
Q psy744 151 SSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAE 230 (405)
Q Consensus 151 ~~~~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~ 230 (405)
. ...+.++| +++.++++
T Consensus 131 ~-----------------------------------------------------------~~~l~~l~----r~~~~V~e 147 (292)
T PRK15094 131 E-----------------------------------------------------------AFSMDKVL----RQAVVVPE 147 (292)
T ss_pred C-----------------------------------------------------------cCCHHHHc----CCCcCcCC
Confidence 0 01233444 45668999
Q ss_pred CCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHH-HhhhccccCccCceEecCCCCHHHH
Q psy744 231 ETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK-EANEHKTDWFEGVEKCLLDETLFTV 309 (405)
Q Consensus 231 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~-~~~~~~~~~~~~~~~v~~~~~l~~a 309 (405)
++++.++++.|.+++.+.+||+|+.|.++|+||..|++..+.....+..+.... .+.. .....+.++...+|.+.
T Consensus 148 ~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~----~~~~~~~v~G~~~l~dl 223 (292)
T PRK15094 148 SKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQ----LSRHTWTVRALASIEDF 223 (292)
T ss_pred CCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEE----eCCCeEEEEeccCHHHH
Confidence 999999999999999999999999999999999999999988764333221110 1111 22345778888888888
Q ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhC
Q psy744 310 MERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 310 ~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~ 346 (405)
.+.+ ++. +| .+ ++-|...++-...++
T Consensus 224 ~~~l---~~~-l~----~~---~~~Tl~G~i~~~l~~ 249 (292)
T PRK15094 224 NEAF---GTH-FS----DE---EVDTIGGLVMQAFGH 249 (292)
T ss_pred HHHh---CCC-CC----CC---CCccHHHHHHHHhCc
Confidence 8775 221 32 11 455666666555543
No 79
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.42 E-value=6.4e-12 Score=100.66 Aligned_cols=111 Identities=32% Similarity=0.466 Sum_probs=93.8
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++..+.++.++++.|.+.+...+||+|++++++|+++..|++.......... ...+.++ |..++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~ 74 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDP-LVTVGDV------MTRDVVTVSPD 74 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCc-cccHHHH------hcCCceecCCC
Confidence 4678899999999999999988999999998899999999999998776542211 1113333 44678889999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 75 TSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred cCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 99999999999999999999998899999999999975
No 80
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.42 E-value=5.5e-13 Score=134.50 Aligned_cols=179 Identities=17% Similarity=0.191 Sum_probs=139.9
Q ss_pred HHHHHhh--hcccccccCCCCCeEEEeCCccHHHHHHHHHH-----cCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhC
Q psy744 77 IFVKFFK--FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVY-----NGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYT 149 (405)
Q Consensus 77 ~~~~~l~--~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~-----~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~ 149 (405)
.+++.+. ..++.++| +.++++++.+.++.+|++.|.+ +++..++|+|++ ++++|+++.+|++..
T Consensus 121 ~i~~ll~~~e~tvg~iM--t~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~-~~l~GvV~l~dLl~a------ 191 (449)
T TIGR00400 121 AINLLLSYSDDSAGRIM--TIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES-KHLKGVLSIRDLILA------ 191 (449)
T ss_pred HHHHHhCCCcchHHHhC--cCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC-CeEEEEEEHHHHhcC------
Confidence 3444443 45889999 5789999999999999999986 566788888876 889999998888621
Q ss_pred CCCCCHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEc
Q psy744 150 SSSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVA 229 (405)
Q Consensus 150 ~~~~~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~ 229 (405)
.+ +.+++++| .+++.++.
T Consensus 192 ~~-----------------------------------------------------------~~~v~~im---~~~~~~v~ 209 (449)
T TIGR00400 192 KP-----------------------------------------------------------EEILSSIM---RSSVFSIV 209 (449)
T ss_pred CC-----------------------------------------------------------CCcHHHHh---CCCCeeEC
Confidence 00 12455566 25678899
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCCHHHH
Q psy744 230 EETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTV 309 (405)
Q Consensus 230 ~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a 309 (405)
+++++.++++.|.+++...+||+|++|+++|+||.+|+++.+.+.. .+++++ ....+..+++.+.++
T Consensus 210 ~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~-------~ed~~~------~~gv~~~~~~~l~~~ 276 (449)
T TIGR00400 210 GVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA-------TEDFYM------IAAVKPLDDSYFDTS 276 (449)
T ss_pred CCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh-------HHHHHH------hcCCCCCcchhhhch
Confidence 9999999999999999999999999999999999999999887652 134332 233345567888999
Q ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 310 MERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 310 ~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
+..|.+++..+|+|. .+.|++| ..++..+.
T Consensus 277 ~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~f~ 306 (449)
T TIGR00400 277 ILVMAKNRIIWLLVL----LVSSTFT-ATIISNYE 306 (449)
T ss_pred HHHHHHhccchHHHH----HHHHHHH-HHHHHHHH
Confidence 999999999999886 4778888 77776654
No 81
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=5.9e-12 Score=102.54 Aligned_cols=112 Identities=15% Similarity=0.207 Sum_probs=93.0
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.++.++.++.+|++.|.+++...+||+|++ ++++|++|..|+.+.+......
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~------------------------- 55 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGP------------------------- 55 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCC-------------------------
Confidence 47889999999999999999999999999987 8999999999998654321000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
....++.+++ ..++.++.+++++.++++.|.+++...+||+|++
T Consensus 56 ---------------------------------~~~~~v~~~~---~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 99 (114)
T cd04619 56 ---------------------------------GCTAPVENVM---TRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN 99 (114)
T ss_pred ---------------------------------cccCCHHHHh---cCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCC
Confidence 0022455555 3678899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+|+.+|+++
T Consensus 100 ~~~~Gvi~~~dl~~ 113 (114)
T cd04619 100 ARPLGVLNARDALK 113 (114)
T ss_pred CcEEEEEEhHhhcc
Confidence 99999999999864
No 82
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=3.6e-12 Score=103.36 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=90.3
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++.+.++.+|++.|.+++...+||+|++ ++++|++|..|+.+.....
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~---------------------------- 52 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPND---------------------------- 52 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhcccc----------------------------
Confidence 46789999999999999999999999999986 8999999999988421000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
+...++.++| ..++.++.+++++.++++.|.+++.+.+||+|++
T Consensus 53 ---------------------------------~~~~~v~~~~---~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~ 96 (111)
T cd04603 53 ---------------------------------YETLKVCEVY---IVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE 96 (111)
T ss_pred ---------------------------------ccccChhhee---ecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC
Confidence 0012355555 2567889999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+||.+|+++
T Consensus 97 ~~~~Giit~~di~~ 110 (111)
T cd04603 97 GKLVGTIYERELLR 110 (111)
T ss_pred CeEEEEEEhHHhhc
Confidence 99999999999975
No 83
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.41 E-value=3.4e-12 Score=102.65 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=88.8
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEe
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDS---EGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKC 300 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v 300 (405)
....+.++.++.++.+.|.+.+...+||+|+ +|+++|+++.+|+.+.... + |..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~------------~------m~~~~~~v 64 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN------------Y------IDPSPFTV 64 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH------------h------ccCCCceE
Confidence 4678899999999999999988889999998 6999999999999876543 1 55678899
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 301 LLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 301 ~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
++++++.++++.|.+++.+.+||++ +|+++|+||+.||+++
T Consensus 65 ~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 65 SPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLKA 105 (105)
T ss_pred CCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence 9999999999999999999999995 7999999999999863
No 84
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.41 E-value=5.1e-12 Score=103.63 Aligned_cols=111 Identities=25% Similarity=0.340 Sum_probs=92.3
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcccc--------chhhhHHHhhhccccCcc
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT--------NLDVTLKEANEHKTDWFE 295 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~--------~l~~~v~~~~~~~~~~~~ 295 (405)
++.++++++++.++++.|.+.+++++||+|++|+++|+++..|+.+........ ....++.++ |..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~ 75 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEI------MTK 75 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHH------hhC
Confidence 467889999999999999999999999999889999999999998765322100 112334454 446
Q ss_pred CceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 296 GVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 296 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
++.++.+++++.++++.|.+++...+||+|+ |+++|++|..||++
T Consensus 76 ~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 76 DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 7889999999999999999999999999986 99999999999985
No 85
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.41 E-value=4e-12 Score=101.76 Aligned_cols=100 Identities=21% Similarity=0.262 Sum_probs=86.7
Q ss_pred eEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCC
Q psy744 226 ETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDET 305 (405)
Q Consensus 226 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~ 305 (405)
+++.++.++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+... .++.++ |...+.++.++++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~--------~~~~~~------~~~~~~~v~~~~~ 68 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENATY--------GDVVDY------IVRGIPYVRLTST 68 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhcc--------cchhhh------hhcCCcEEcCCCC
Confidence 57889999999999999999999999998 99999999999986321 123333 4467889999999
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 306 LFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 306 l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+.++++.|.+++.+.+||+| +|+++|+||..|+++
T Consensus 69 l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 69 AEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred HHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 99999999999999999998 699999999999975
No 86
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.39 E-value=4.6e-12 Score=128.54 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=98.7
Q ss_pred cCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccC--
Q psy744 222 YENVETVAEETSIIHALRKFLERRVSALPMTDS---EGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEG-- 296 (405)
Q Consensus 222 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~-- 296 (405)
.++++++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+|+.... ..+.++.++| .++
T Consensus 107 i~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~------~~~~~V~eIM------t~~~~ 174 (505)
T PLN02274 107 VSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN------DRETKLSEVM------TSDDD 174 (505)
T ss_pred cCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc------ccCCcHHHHh------ccCCC
Confidence 378999999999999999999999999999987 48999999999996532 1245677764 344
Q ss_pred ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 297 VEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 297 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
+.++.+++++.++++.|.+++...+||+|++|+++|+||++||++.+..
T Consensus 175 lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 175 LVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 7899999999999999999999999999989999999999999999874
No 87
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.39 E-value=7.6e-12 Score=125.90 Aligned_cols=118 Identities=16% Similarity=0.188 Sum_probs=100.6
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
++.++| .++++++.+++++.++++.|.+.+++.+||+|+ ++++|+||.+|+... ....++.++
T Consensus 89 Kv~eim---~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-gklvGIVT~rDL~~~-------~~~~~V~dI------ 151 (475)
T TIGR01303 89 KSRDLV---LDTPITLAPHDTVSDAMALIHKRAHGAAVVILE-DRPVGLVTDSDLLGV-------DRFTQVRDI------ 151 (475)
T ss_pred chhhcc---ccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-CEEEEEEEHHHhhcC-------CCCCCHHHH------
Confidence 444555 378899999999999999999999999999984 799999999998532 112346665
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
|..+++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++.....+
T Consensus 152 Mt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~ 206 (475)
T TIGR01303 152 MSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTP 206 (475)
T ss_pred ccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCc
Confidence 5678999999999999999999999999999998899999999999999887553
No 88
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=7.9e-12 Score=103.72 Aligned_cols=124 Identities=18% Similarity=0.222 Sum_probs=92.1
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++++++++.+|++.|.++++..+||+|++ ++++|+++..|+++...............
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~------------------ 62 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTIT------------------ 62 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchh------------------
Confidence 67899999999999999999999999999987 89999999999987553211000000000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
.. .+.. . .....+.+ ..++.++.+++++.++++.|.+++.+.+||+|++
T Consensus 63 -----------~~---~~~~----~----------~~~~~~~~---~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~ 111 (126)
T cd04642 63 -----------FK---ELSE----K----------FTDSDGVK---SRPLITCTPSSTLKEVITKLVANKVHRVWVVDEE 111 (126)
T ss_pred -----------hh---hhhh----h----------cccccccc---cCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCC
Confidence 00 0000 0 00111222 3678899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+||..|+++
T Consensus 112 ~~~~Giit~~dil~ 125 (126)
T cd04642 112 GKPIGVITLTDIIS 125 (126)
T ss_pred CCEEEEEEHHHHhc
Confidence 99999999999875
No 89
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.38 E-value=6.4e-12 Score=127.43 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=97.3
Q ss_pred cCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC---CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCcc--C
Q psy744 222 YENVETVAEETSIIHALRKFLERRVSALPMTDSE---GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFE--G 296 (405)
Q Consensus 222 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~--~ 296 (405)
..+++++.+++++.+++++|.+++++.+||+|++ ++++|+|+.+|+.... ..+.++.++| .+ +
T Consensus 103 i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~------~~~~~V~diM------t~~~~ 170 (495)
T PTZ00314 103 IMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK------DKSTPVSEVM------TPREK 170 (495)
T ss_pred ccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc------cCCCCHHHhh------CCcCC
Confidence 4788999999999999999999999999999974 8999999999997321 1245577764 34 7
Q ss_pred ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 297 VEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 297 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
+.++.+++++.+++++|.+++.+.+||+|++|+++|+||++||++...
T Consensus 171 lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 171 LVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 889999999999999999999999999999999999999999998865
No 90
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.2e-11 Score=105.16 Aligned_cols=110 Identities=25% Similarity=0.386 Sum_probs=91.7
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccc-cc------------------------
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTY-TN------------------------ 278 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~-~~------------------------ 278 (405)
+++++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+++.+..... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 5678999999999999999999999999997 999999999999887653320 00
Q ss_pred ------hhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 279 ------LDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 279 ------l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
...++.+ .|..++.++.+++++.++++.|.+++.+++||+++ |+++|+||..|+++
T Consensus 81 ~~~~~~~~~~v~~------~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRD------IMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHH------HcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 0112333 35578899999999999999999999999999986 99999999999974
No 91
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=1.2e-11 Score=101.27 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=91.3
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.++++..+||+|.+ ++++|++|..|+++........
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~------------------------- 55 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADL------------------------- 55 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCc-------------------------
Confidence 56889999999999999999999999999987 8899999999998654311000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...++.++|.. ..++.++.+++++.+++++|.+++++.+||+|++
T Consensus 56 ----------------------------------~~~~~~~~~~~-~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~ 100 (118)
T cd04617 56 ----------------------------------QKVPVGVIMTR-MPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKV 100 (118)
T ss_pred ----------------------------------cCCCHHHHhCC-CCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCC
Confidence 01234444420 1367899999999999999999999999999976
Q ss_pred ---CcEEEEEeHHHHHH
Q psy744 256 ---GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 ---g~lvGivt~~Dl~~ 269 (405)
|+++|+||..|+++
T Consensus 101 ~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 101 DEGLEVIGRITKTNITK 117 (118)
T ss_pred CccceEEEEEEhhheec
Confidence 69999999999864
No 92
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.37 E-value=4.1e-12 Score=128.20 Aligned_cols=121 Identities=16% Similarity=0.179 Sum_probs=103.5
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHh-----cCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHH
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLE-----RRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKE 285 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~-----~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~ 285 (405)
..+++++|. +++++++++.++.++++.|.+ .+...+||+|++++++|+++.+|++... .+.++++
T Consensus 130 e~tvg~iMt---~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~-------~~~~v~~ 199 (449)
T TIGR00400 130 DDSAGRIMT---IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK-------PEEILSS 199 (449)
T ss_pred cchHHHhCc---CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC-------CCCcHHH
Confidence 458899994 789999999999999999975 4556789999899999999999997531 1234666
Q ss_pred hhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 286 ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 286 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
+ |.+++.++.+++++.++++.|.+++...+||||++|+++|+||.+|+++.+..+.
T Consensus 200 i------m~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~ 255 (449)
T TIGR00400 200 I------MRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA 255 (449)
T ss_pred H------hCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh
Confidence 5 4467889999999999999999999999999999999999999999999997543
No 93
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.37 E-value=7.3e-12 Score=126.19 Aligned_cols=111 Identities=21% Similarity=0.318 Sum_probs=98.0
Q ss_pred cCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC---CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCc-cCc
Q psy744 222 YENVETVAEETSIIHALRKFLERRVSALPMTDSE---GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWF-EGV 297 (405)
Q Consensus 222 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~-~~~ 297 (405)
.++++++.++.++.++++.|.+++++++||+|++ ++++|+|+.+|++.... ...++.++ |. .++
T Consensus 87 ~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~------~~~~V~dv------m~~~~~ 154 (450)
T TIGR01302 87 ISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD------KGKPVSEV------MTREEV 154 (450)
T ss_pred ecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc------CCCCHHHh------hCCCCC
Confidence 3788999999999999999999999999999987 79999999999975321 13456665 44 488
Q ss_pred eEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 298 EKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 298 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
+++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++.+.
T Consensus 155 ~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 155 ITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 99999999999999999999999999999999999999999999874
No 94
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.36 E-value=2e-11 Score=99.40 Aligned_cols=109 Identities=35% Similarity=0.468 Sum_probs=94.4
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecC
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL 302 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~ 302 (405)
.+++++.++.++.++...|.++++..+||++. ++++|++|.+|+.++........ .++.++ |..++.++.+
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~~--~~v~~v------~~~~~~~~~~ 77 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRL--LPVKEV------MTKPVVTVDP 77 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCcc--ccHHHh------ccCCcEEECC
Confidence 67899999999999999999999999999984 48999999999999987663221 134554 5568899999
Q ss_pred CCCHHHHHHHHHH-cCCCEEEEEcCCC-cEEEEEeHHHHH
Q psy744 303 DETLFTVMERIVR-AEVHRLVVVDEDD-HVLGVLSLSDIL 340 (405)
Q Consensus 303 ~~~l~~a~~~m~~-~~~~~lpVvd~~g-~lvGiIt~~DIl 340 (405)
++++.++++.|.+ ++++.+||+|+++ +++|++|.+|++
T Consensus 78 ~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 78 DTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred CCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 9999999999999 7999999999885 999999999974
No 95
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.36 E-value=6.6e-12 Score=118.43 Aligned_cols=113 Identities=27% Similarity=0.386 Sum_probs=96.8
Q ss_pred cccccccccccCC-eeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcc
Q psy744 212 KTLRDLKIGTYEN-VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHK 290 (405)
Q Consensus 212 ~~v~~i~~~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~ 290 (405)
.+++++|. ++ +.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+++....+. ..+.++.++
T Consensus 155 ~~v~~im~---~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~--~~~~~v~~i---- 225 (268)
T TIGR00393 155 VKVKDLMQ---TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGG--SLKSEVRDF---- 225 (268)
T ss_pred hhHHHHhC---CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCC--cccCcHHHh----
Confidence 36778773 55 889999999999999999999999999998899999999999988654321 234556666
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEe
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLS 335 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt 335 (405)
|.+++.++.+++++.+|++.|.+++..++||+|++|+++|+|+
T Consensus 226 --m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 226 --MTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred --CCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 4577889999999999999999999999999998899999985
No 96
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.36 E-value=4.1e-12 Score=118.34 Aligned_cols=121 Identities=17% Similarity=0.265 Sum_probs=106.1
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
.+.++|..- .+..++.+++++.+..++..+.+++++||+|...+++|+||.+|+..... +.++..+
T Consensus 189 ~Vedi~~P~-~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~-------~t~ieKV------ 254 (432)
T COG4109 189 TVEDIMTPL-EDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKP-------STTIEKV------ 254 (432)
T ss_pred eHHHhcccc-ccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCC-------CccHHHH------
Confidence 677777422 67788999999999999999999999999999999999999999976533 3345554
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
|++++.++.+.+++..+.++|.-.++..+||+|++.+++|+||++|+++.+..-.
T Consensus 255 Mtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q 309 (432)
T COG4109 255 MTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQ 309 (432)
T ss_pred hccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhc
Confidence 7799999999999999999999999999999999999999999999999987543
No 97
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.9e-11 Score=99.41 Aligned_cols=112 Identities=14% Similarity=0.200 Sum_probs=91.7
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.++.++.++.+|++.|.+++...+||+|+..++++|++|..|+++.+......+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~------------------------ 57 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDP------------------------ 57 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCC------------------------
Confidence 56889999999999999999999999999874368999999999987654310000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...++.++| ..++.++++++++.++++.|.+.+...+||+|+
T Consensus 58 ----------------------------------~~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~- 99 (114)
T cd04630 58 ----------------------------------DRVNVYEIM---TKPLISVSPDMDIKYCARLMERTNIRRAPVVEN- 99 (114)
T ss_pred ----------------------------------CccCHHHHh---cCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-
Confidence 012455555 257889999999999999999999999999997
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+|+..|+++
T Consensus 100 ~~~~Gvi~~~dl~~ 113 (114)
T cd04630 100 NELIGIISLTDIFL 113 (114)
T ss_pred CEEEEEEEHHHhhc
Confidence 99999999999875
No 98
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=1.5e-11 Score=100.58 Aligned_cols=111 Identities=20% Similarity=0.217 Sum_probs=89.2
Q ss_pred CeeEEcCCCCHHHHHHHHHhcC-CCEEEEECCCCcEEEEEeHHHHHHHHHhccccc--hhhhHHHhhhccccCccCceEe
Q psy744 224 NVETVAEETSIIHALRKFLERR-VSALPMTDSEGHLVDIFAKFDVINLAAEKTYTN--LDVTLKEANEHKTDWFEGVEKC 300 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~--l~~~v~~~~~~~~~~~~~~~~v 300 (405)
++.++.+++++.++++.|...+ ++.+||+|+ |+++|+++..|+++......... .+.++.++ |..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~------~~~~~~~v 74 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEV------MDPDPLIV 74 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHh------cCCCcEEe
Confidence 4667899999999999998877 889999998 99999999999987654310000 12345554 55788899
Q ss_pred cCCCCHHHHHHHHHHcCCC---EEEEEcCCCcEEEEEeHHHHHH
Q psy744 301 LLDETLFTVMERIVRAEVH---RLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 301 ~~~~~l~~a~~~m~~~~~~---~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
.+++++.++++.|.+++.. ..+|++++|+++|+||..|+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 75 EADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 9999999999999998864 4468888899999999999975
No 99
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.34 E-value=1.4e-11 Score=125.34 Aligned_cols=117 Identities=23% Similarity=0.279 Sum_probs=101.5
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcccc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTD 292 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~ 292 (405)
.++++| ..+++++.+++++.++++.|.+++++.+||+|++++++|+|+.+|+.... ....++.++
T Consensus 88 ~~~dim---~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~------~~~~~V~di------ 152 (486)
T PRK05567 88 RSESGV---VTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFET------DLSQPVSEV------ 152 (486)
T ss_pred hhhhcc---cCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcc------cCCCcHHHH------
Confidence 345555 37899999999999999999999999999999999999999999996432 123356665
Q ss_pred Cc-cCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 293 WF-EGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 293 ~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
|. ++++++.+++++.++++.|.+++++.+||+|++|+++|+||.+||++.+.
T Consensus 153 m~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 153 MTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE 205 (486)
T ss_pred cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence 44 67899999999999999999999999999999999999999999999875
No 100
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=3e-11 Score=99.70 Aligned_cols=120 Identities=15% Similarity=0.182 Sum_probs=91.2
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++.+.++.+|++.|.++++..+||+|+++++++|+++..|+++.+........ ..+..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~--~~~~~---------------- 63 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFP--GLDPL---------------- 63 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhcc--chhhh----------------
Confidence 467889999999999999999999999999854789999999999976543211000 00000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
.+ .......++ ..++.++.+++++.+|++.|.+++.+++||+|++
T Consensus 64 ------------------~~--------------~~~~~~~~~---~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 108 (123)
T cd04627 64 ------------------YP--------------IPLRDLTIG---TSDVISINGDQPLIDALHLMHNEGISSVAVVDNQ 108 (123)
T ss_pred ------------------hh--------------hhhhhcccC---cCCceEeCCCCCHHHHHHHHHHcCCceEEEECCC
Confidence 00 000111223 2678899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHH
Q psy744 256 GHLVDIFAKFDVI 268 (405)
Q Consensus 256 g~lvGivt~~Dl~ 268 (405)
|+++|+||..|+.
T Consensus 109 ~~~vGiit~~di~ 121 (123)
T cd04627 109 GNLIGNISVTDVR 121 (123)
T ss_pred CcEEEEEeHHHhh
Confidence 9999999999985
No 101
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=2.2e-11 Score=97.61 Aligned_cols=104 Identities=23% Similarity=0.339 Sum_probs=88.5
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCC
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLD 303 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 303 (405)
++.++.++.++.++++.|.+.+++.+||++++++++|+++..+++.... +.++.++ |..++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~-------~~~~~~~------~~~~~~~v~~~ 68 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE-------EEQLALL------MTRDPPTVSPD 68 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc-------cchHHHH------hcCCCceECCC
Confidence 4678889999999999999889999999998899999999999975311 1223343 44678889999
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
+++.++++.|.+++.+.+||+| +|+++|+||..|+++
T Consensus 69 ~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~ 105 (106)
T cd04638 69 DDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR 105 (106)
T ss_pred CCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence 9999999999999999999998 589999999999875
No 102
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.33 E-value=2.6e-11 Score=121.72 Aligned_cols=131 Identities=19% Similarity=0.258 Sum_probs=111.3
Q ss_pred cccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEEC-CCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhh
Q psy744 210 LNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTD-SEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANE 288 (405)
Q Consensus 210 ~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~ 288 (405)
.+.+++++|... .++..++.+.++.++.+.+.+.+++++||++ +.+.++|++..+|++.....+.. .. ....
T Consensus 204 ~~~~v~eiMtPR-~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~~--~~~~--- 276 (429)
T COG1253 204 DDRTVREIMTPR-TDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-DL--DLRV--- 276 (429)
T ss_pred CCcEeeeEeeec-ccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-cc--chhh---
Confidence 366899999764 7899999999999999999999999999999 45789999999999998876631 01 1111
Q ss_pred ccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCCC
Q psy744 289 HKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDD 351 (405)
Q Consensus 289 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~~~~~ 351 (405)
..++++.+++++++.++++.|.+.+.|...|+||+|.+.|+||..||++.++++-..++
T Consensus 277 ----~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~ 335 (429)
T COG1253 277 ----LVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEH 335 (429)
T ss_pred ----cccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcc
Confidence 12488999999999999999999999999999999999999999999999997665443
No 103
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=2.5e-11 Score=100.05 Aligned_cols=123 Identities=22% Similarity=0.253 Sum_probs=96.1
Q ss_pred CCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCC
Q psy744 94 SAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIH 173 (405)
Q Consensus 94 s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~ 173 (405)
++++++++.+.++.+|++.|.++++..+||+|++ ++++|+++..|++..+....... ...
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~-----~~~-------------- 60 (124)
T cd04600 1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRP-----LRG-------------- 60 (124)
T ss_pred CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccch-----hhh--------------
Confidence 4678899999999999999999999999999987 89999999999986543210000 000
Q ss_pred EEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEEC
Q psy744 174 RLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTD 253 (405)
Q Consensus 174 ~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 253 (405)
++ . ......++.++| .+++.++.+++++.++++.|.+.+.+.+||+|
T Consensus 61 ----------------------~~----~----~~~~~~~i~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~ 107 (124)
T cd04600 61 ----------------------RL----R----GRDKPETVGDIM---SPPVVTVRPDTPIAELVPLLADGGHHHVPVVD 107 (124)
T ss_pred ----------------------hh----h----cccccccHHHhc---cCCCeeeCCCCcHHHHHHHHHhcCCCceeEEc
Confidence 00 0 000122456666 36789999999999999999999999999999
Q ss_pred CCCcEEEEEeHHHHHH
Q psy744 254 SEGHLVDIFAKFDVIN 269 (405)
Q Consensus 254 ~~g~lvGivt~~Dl~~ 269 (405)
++|+++|+++..|+++
T Consensus 108 ~~g~~~Gvit~~di~~ 123 (124)
T cd04600 108 EDRRLVGIVTQTDLIA 123 (124)
T ss_pred CCCCEEEEEEhHHhhc
Confidence 8899999999999875
No 104
>KOG1764|consensus
Probab=99.32 E-value=7e-11 Score=115.89 Aligned_cols=178 Identities=20% Similarity=0.272 Sum_probs=135.1
Q ss_pred CCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCC------CCHHHHhh--------
Q psy744 95 AKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSS------ITMEELEE-------- 160 (405)
Q Consensus 95 ~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~------~~~~~l~~-------- 160 (405)
...+.+.+..++.+|...+.+++++.+||.|.+.+.+.+++|..-+++++..+..... .++.++..
T Consensus 162 ~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~ 241 (381)
T KOG1764|consen 162 PPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIAS 241 (381)
T ss_pred CCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhhee
Confidence 3349999999999999999999999999999777899999999999999876544322 12222111
Q ss_pred ----ccH---HHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHh-hCCCCCccccccccccccccccCCeeEEcCCC
Q psy744 161 ----HKL---ETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLY-INDLPKPSFLNKTLRDLKIGTYENVETVAEET 232 (405)
Q Consensus 161 ----~~i---~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~-~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~ 232 (405)
.++ ...|..+++..+||++..|+.+|+++..|+....... ++...... ........+. ...+++++.++.
T Consensus 242 i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~-l~~~~~~~~~-~~~~vvtc~~~s 319 (381)
T KOG1764|consen 242 ISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSC-LSEALSHRPI-RFEGVVTCRPTS 319 (381)
T ss_pred ecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhH-HHHHhhhccc-ccCccEEEeecc
Confidence 011 1289999999999999989999999999999755421 11111110 0111111111 126689999999
Q ss_pred CHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 233 SIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 233 ~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
++.+++..|..+++++++|||++|.++|+||..|++..+...
T Consensus 320 sL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 320 TLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred hHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 999999999999999999999999999999999999988765
No 105
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=4.1e-11 Score=97.18 Aligned_cols=110 Identities=21% Similarity=0.236 Sum_probs=90.4
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+.++++.+.++.+|++.|.+++.+.+||+|++ ++++|++|..|+++.+.... .+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~-~~------------------------ 56 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGL-SL------------------------ 56 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCC-Cc------------------------
Confidence 35778999999999999999999999999987 89999999999986543210 00
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..++.+++ ...+.++.+++++.++++.|.+.+.+.+||+|++
T Consensus 57 -----------------------------------~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~ 98 (113)
T cd04607 57 -----------------------------------DDPVSEVM---NRNPITAKVGSSREEILALMRERSIRHLPILDEE 98 (113)
T ss_pred -----------------------------------CCCHHHhh---cCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCC
Confidence 11344444 2567789999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+||.+|++.
T Consensus 99 ~~~~Gvit~~di~~ 112 (113)
T cd04607 99 GRVVGLATLDDLLS 112 (113)
T ss_pred CCEEEEEEhHHhcc
Confidence 99999999999863
No 106
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.31 E-value=2e-11 Score=118.26 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=102.3
Q ss_pred hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccH
Q psy744 84 FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKL 163 (405)
Q Consensus 84 ~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i 163 (405)
..++.|+|.....+++++++.++.+|++.|.+++...+||+|++ ++++|++|..|+.+.+.... .
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~-~------------- 260 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGG-A------------- 260 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCC-C-------------
Confidence 56788999443338999999999999999999999999999987 89999999999986443110 0
Q ss_pred HHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHh
Q psy744 164 ETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 164 ~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~ 243 (405)
...++.++| .+++.++.+++++.++++.|.+
T Consensus 261 ----------------------------------------------~~~~v~~im---~~~~~~v~~~~~l~~a~~~m~~ 291 (321)
T PRK11543 261 ----------------------------------------------LTTPVNEAM---TRGGTTLQAQSRAIDAKEILMK 291 (321)
T ss_pred ----------------------------------------------cCCcHHHhc---CCCCEEECCCCCHHHHHHHHHH
Confidence 022455666 3678899999999999999999
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHH
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVINL 270 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~~ 270 (405)
++...+||+|++|+++|+||..|++++
T Consensus 292 ~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 292 RKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred cCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 999999999988999999999999864
No 107
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=4.6e-11 Score=96.49 Aligned_cols=111 Identities=24% Similarity=0.356 Sum_probs=91.3
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.+++...+||+|++ ++++|+++..|+++.+.......
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~------------------------ 56 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASA------------------------ 56 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCc------------------------
Confidence 56789999999999999999999999999987 89999999999987654210000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...++.++| ..++.++.++.++.++++.|.+.+.+.+||+++
T Consensus 57 ----------------------------------~~~~~~~~~---~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~- 98 (113)
T cd04623 57 ----------------------------------LDTPVSEIM---TRNVITVTPDDTVDEAMALMTERRFRHLPVVDG- 98 (113)
T ss_pred ----------------------------------cccCHHHhc---CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-
Confidence 012345555 257889999999999999999999999999987
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+|+..|+++
T Consensus 99 ~~~~Gvit~~di~~ 112 (113)
T cd04623 99 GKLVGIVSIGDVVK 112 (113)
T ss_pred CEEEEEEEHHHhhc
Confidence 99999999999875
No 108
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.30 E-value=1.9e-11 Score=101.38 Aligned_cols=112 Identities=17% Similarity=0.221 Sum_probs=91.4
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++.++.++.+|++.|.++++..+||+|++ ++++|++|..|++..+......+
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~------------------------ 57 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQP------------------------ 57 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCC------------------------
Confidence 56889999999999999999999999999987 89999999999986554321111
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHH---------hcCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFL---------ERRV 246 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~---------~~~~ 246 (405)
..++.++| .+++.++.+++++.++.+++. +.+.
T Consensus 58 -----------------------------------~~~v~~im---~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~ 99 (124)
T cd04608 58 -----------------------------------SDPVSKAL---YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQIS 99 (124)
T ss_pred -----------------------------------CCcHHHHh---hccceecCCCCCHHHHHhhcccCCceEEEecccc
Confidence 23566777 377889999999999998653 3356
Q ss_pred CEEEEECCCCcEEEEEeHHHHHHH
Q psy744 247 SALPMTDSEGHLVDIFAKFDVINL 270 (405)
Q Consensus 247 ~~lpVvd~~g~lvGivt~~Dl~~~ 270 (405)
.++||+|++|+++|+||.+|++++
T Consensus 100 ~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 100 SAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred ccccccccccceEEEEehhHhhhh
Confidence 778899988999999999999875
No 109
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=6.6e-11 Score=95.32 Aligned_cols=108 Identities=26% Similarity=0.338 Sum_probs=90.0
Q ss_pred CCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCE
Q psy744 95 AKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHR 174 (405)
Q Consensus 95 ~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~ 174 (405)
++++++.++.++.+|++.|.+++...+||+|++ ++++|++|..|+++.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~-------------------------- 54 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDK-------------------------- 54 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCc--------------------------
Confidence 567889999999999999999999999999987 89999999999985443210
Q ss_pred EEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC
Q psy744 175 LPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS 254 (405)
Q Consensus 175 lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 254 (405)
..+.+++ ..++.++.+++++.++++.|.+.+...+||+++
T Consensus 55 -------------------------------------~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 94 (110)
T cd04605 55 -------------------------------------KSVEDIM---TRNVITATPDEPIDVAARKMERHNISALPVVDA 94 (110)
T ss_pred -------------------------------------cCHHHhc---CCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC
Confidence 0122333 256788999999999999999999999999998
Q ss_pred CCcEEEEEeHHHHHH
Q psy744 255 EGHLVDIFAKFDVIN 269 (405)
Q Consensus 255 ~g~lvGivt~~Dl~~ 269 (405)
+|+++|+++..|+++
T Consensus 95 ~~~~~G~v~~~di~~ 109 (110)
T cd04605 95 ENRVIGIITSEDISK 109 (110)
T ss_pred CCcEEEEEEHHHhhh
Confidence 899999999999864
No 110
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.29 E-value=1e-10 Score=118.00 Aligned_cols=126 Identities=20% Similarity=0.236 Sum_probs=105.8
Q ss_pred HHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHH
Q psy744 78 FVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEE 157 (405)
Q Consensus 78 ~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~ 157 (405)
..+.++..+..++| ..+++++.++.++.+|++.|.++++.++||+|++ ++++|++|..|+... .+
T Consensus 82 q~~~l~~VKv~~iM--i~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~------~~------ 146 (479)
T PRK07807 82 VAEVVAWVKSRDLV--FDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGV------DR------ 146 (479)
T ss_pred HHHHHhhccccccc--ccCCeEECCCCCHHHHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcC------cc------
Confidence 34455666778888 6789999999999999999999999999999976 899999999998410 00
Q ss_pred HhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHH
Q psy744 158 LEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHA 237 (405)
Q Consensus 158 l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a 237 (405)
..++.++| ..+++++++++++.+|
T Consensus 147 -----------------------------------------------------~~~V~diM---t~~~itV~~d~sL~eA 170 (479)
T PRK07807 147 -----------------------------------------------------FTQVRDVM---STDLVTLPAGTDPREA 170 (479)
T ss_pred -----------------------------------------------------CCCHHHhc---cCCceEECCCCcHHHH
Confidence 11455666 3688999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 238 LRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 238 ~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
++.|.++++..+||+|++|+++|+||.+||++.....
T Consensus 171 l~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 171 FDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred HHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence 9999999999999999889999999999999876543
No 111
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.29 E-value=6.5e-11 Score=96.30 Aligned_cols=111 Identities=19% Similarity=0.307 Sum_probs=91.1
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++++.++.+|++.|.+++...+||+|++ ++++|+++..|+.+.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~------------------------ 56 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGE------------------------ 56 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccc------------------------
Confidence 35688999999999999999999999999987 89999999999986543210000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..++.++| ..++.++.+++++.++++.|.+++...+||+|++
T Consensus 57 -----------------------------------~~~~~~~~---~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~ 98 (115)
T cd04593 57 -----------------------------------PSAVDEVA---TPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRG 98 (115)
T ss_pred -----------------------------------cccHHHhc---cCCceEECCCCCHHHHHHHHHHcCCceeeEEeCC
Confidence 11234444 2678899999999999999999999999999987
Q ss_pred --CcEEEEEeHHHHHH
Q psy744 256 --GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 --g~lvGivt~~Dl~~ 269 (405)
|+++|+||.+|+++
T Consensus 99 ~~~~~~Gvit~~di~~ 114 (115)
T cd04593 99 NPGQVLGLLTRENVLL 114 (115)
T ss_pred CCCeEEEEEEhHHhhc
Confidence 79999999999975
No 112
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.29 E-value=3.9e-11 Score=121.78 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=98.2
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhcc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHK 290 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~ 290 (405)
..+++++| .+++.++.+++++.++++.|.+++++.+||+|++|+++|+|+..|+++.+.... ...+.++.++
T Consensus 334 ~~~v~~im---~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~-~~~~~~v~~i---- 405 (454)
T TIGR01137 334 NATVKDLH---LPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK-ANPDDAVSKV---- 405 (454)
T ss_pred cCCHHHhC---cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccC-CCcCCCHHHh----
Confidence 44677777 378999999999999999999999999999998899999999999998665431 1223456665
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
|..++.++++++++.++++.|.+++ .+||+++|+++|+||++||+++|
T Consensus 406 --m~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 406 --MSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred --cCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 4467889999999999999998864 34455579999999999999986
No 113
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.29 E-value=5.4e-11 Score=121.14 Aligned_cols=177 Identities=21% Similarity=0.207 Sum_probs=128.2
Q ss_pred cccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHH
Q psy744 87 CYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETN 166 (405)
Q Consensus 87 ~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~ 166 (405)
..|+| ..++++++++.++.+|++.|.++++..+||+|++ ++++|++|..|+.... ..
T Consensus 89 ~~dim--~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~-g~lvGiVt~~DL~~~~-----~~--------------- 145 (486)
T PRK05567 89 SESGV--VTDPVTVTPDTTLAEALALMARYGISGVPVVDEN-GKLVGIITNRDVRFET-----DL--------------- 145 (486)
T ss_pred hhhcc--cCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC-CEEEEEEEHHHhhhcc-----cC---------------
Confidence 44666 5789999999999999999999999999999976 8999999999985210 00
Q ss_pred HHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCC
Q psy744 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRV 246 (405)
Q Consensus 167 l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~ 246 (405)
..++.++|. .++++++.+++++.++++.|.++++
T Consensus 146 --------------------------------------------~~~V~dim~--~~~~v~v~~~~sl~eal~~m~~~~~ 179 (486)
T PRK05567 146 --------------------------------------------SQPVSEVMT--KERLVTVPEGTTLEEALELLHEHRI 179 (486)
T ss_pred --------------------------------------------CCcHHHHcC--CCCCEEECCCCCHHHHHHHHHHcCC
Confidence 113444552 1578899999999999999999999
Q ss_pred CEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEc-
Q psy744 247 SALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVD- 325 (405)
Q Consensus 247 ~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd- 325 (405)
+.+||+|++|+++|+||.+|+++...... . .... .........+...+ .-.+..+.|.+.+++.+ |+|
T Consensus 180 ~~lpVVDe~g~lvGiIT~~DLl~~~~~p~---a--~~d~---~g~l~V~aai~~~~--~~~e~a~~L~~agvdvi-vvD~ 248 (486)
T PRK05567 180 EKLPVVDDNGRLKGLITVKDIEKAEEFPN---A--CKDE---QGRLRVGAAVGVGA--DNEERAEALVEAGVDVL-VVDT 248 (486)
T ss_pred CEEEEEcCCCcEEEEEEhHHhhhhhhCCC---c--cccc---CCCEEEEeecccCc--chHHHHHHHHHhCCCEE-EEEC
Confidence 99999999999999999999998764211 0 0000 00001112222333 22778888999999855 555
Q ss_pred CCCcEEEEEeHHHHHHHH
Q psy744 326 EDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 326 ~~g~lvGiIt~~DIl~~l 343 (405)
.+|+..|+++.-+.++.-
T Consensus 249 a~g~~~~vl~~i~~i~~~ 266 (486)
T PRK05567 249 AHGHSEGVLDRVREIKAK 266 (486)
T ss_pred CCCcchhHHHHHHHHHhh
Confidence 458887877666666543
No 114
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.29 E-value=3.9e-11 Score=116.44 Aligned_cols=123 Identities=14% Similarity=0.259 Sum_probs=100.7
Q ss_pred hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccH
Q psy744 84 FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKL 163 (405)
Q Consensus 84 ~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i 163 (405)
..++.|+|.+..+++++++++++.+|++.|.++++..+||+|++ ++++|++|..|+.+.+....
T Consensus 201 ~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~--------------- 264 (326)
T PRK10892 201 LLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGI--------------- 264 (326)
T ss_pred cCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCC---------------
Confidence 44678888433389999999999999999999999888888876 89999999999875332100
Q ss_pred HHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHh
Q psy744 164 ETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 164 ~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~ 243 (405)
.+...++.++| .+++.++.+++++.+|++.|.+
T Consensus 265 --------------------------------------------~~~~~~v~~im---~~~~~~v~~~~~l~~a~~~m~~ 297 (326)
T PRK10892 265 --------------------------------------------DLRQASIADVM---TPGGIRVRPGILAVDALNLMQS 297 (326)
T ss_pred --------------------------------------------CcccCCHHHhc---CCCCEEECCCCCHHHHHHHHHH
Confidence 00123577777 3688999999999999999999
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHH
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVINL 270 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~~ 270 (405)
++++.+||++ +|+++|+||..|++++
T Consensus 298 ~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 298 RHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred CCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 9999999998 5899999999999864
No 115
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.28 E-value=1.2e-10 Score=93.89 Aligned_cols=109 Identities=18% Similarity=0.269 Sum_probs=89.6
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++..+.++.+|++.|.+++...+||++++.++++|++|..|+++...... ..
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~--~~----------------------- 56 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE--ED----------------------- 56 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC--Cc-----------------------
Confidence 57889999999999999999999999999875478999999999986553210 00
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..+..++ .++.++.+++++.++++.|.+++.+.+||+|++
T Consensus 57 ------------------------------------~~~~~~~----~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~ 96 (111)
T cd04590 57 ------------------------------------LDLRDLL----RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEY 96 (111)
T ss_pred ------------------------------------CCHHHHh----cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECC
Confidence 0122222 356788999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|++|..|+++
T Consensus 97 ~~~~Gvit~~di~~ 110 (111)
T cd04590 97 GGTAGLVTLEDILE 110 (111)
T ss_pred CCEEEEeEHHHhhc
Confidence 99999999999864
No 116
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=6.7e-11 Score=96.17 Aligned_cols=114 Identities=19% Similarity=0.433 Sum_probs=90.2
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++.++++.+|++.|.++++..+||+|++ ++++|+++..|+++++.... ......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~---~~~~~~------------------ 59 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLE---NLDLER------------------ 59 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccC---chhHHH------------------
Confidence 57899999999999999999999999999986 89999999999987653210 000000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
+...++.++| ...+.++.+++++.++++.|.+.+ .+||+|++
T Consensus 60 ---------------------------------~~~~~v~~~~---~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~ 101 (116)
T cd04643 60 ---------------------------------LVDLKVIDVM---NTDVPVIIDDADIEEILHLLIDQP--FLPVVDDD 101 (116)
T ss_pred ---------------------------------HhCCcHHHHh---cCCCceecCCCCHHHHHHHHhcCC--ceeEEeCC
Confidence 0022455555 357889999999999999998754 59999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|++|..|+++
T Consensus 102 ~~~~Gvit~~dil~ 115 (116)
T cd04643 102 GIFIGIITRREILK 115 (116)
T ss_pred CeEEEEEEHHHhhc
Confidence 99999999999875
No 117
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.27 E-value=1.4e-10 Score=93.95 Aligned_cols=110 Identities=21% Similarity=0.275 Sum_probs=90.4
Q ss_pred eEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEEE
Q psy744 97 LVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRLP 176 (405)
Q Consensus 97 vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~lp 176 (405)
..++.++.++.+|++.|.+++...+||+|.+ ++++|++|..|+.+.+.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~--------------------------- 54 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEE--------------------------- 54 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhh---------------------------
Confidence 5788999999999999999999999999987 899999999999854322100
Q ss_pred EEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCC
Q psy744 177 VIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEG 256 (405)
Q Consensus 177 Vvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g 256 (405)
+...++.++| ..++.++.+++++.++++.|.+.+...+||+|++|
T Consensus 55 --------------------------------~~~~~i~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g 99 (113)
T cd04615 55 --------------------------------LKDAKVREVM---NSPVITIDANDSIAKARWLMSNNNISRLPVLDDKG 99 (113)
T ss_pred --------------------------------hcCCcHHHhc---cCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCC
Confidence 0012344444 25788899999999999999999999999999889
Q ss_pred cEEEEEeHHHHHH
Q psy744 257 HLVDIFAKFDVIN 269 (405)
Q Consensus 257 ~lvGivt~~Dl~~ 269 (405)
+++|+++..|+++
T Consensus 100 ~~~Gvvt~~dl~~ 112 (113)
T cd04615 100 KVGGIVTEDDILR 112 (113)
T ss_pred eEEEEEEHHHhhc
Confidence 9999999999864
No 118
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.27 E-value=7.3e-11 Score=99.27 Aligned_cols=104 Identities=20% Similarity=0.206 Sum_probs=81.8
Q ss_pred CeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchh----------hhHHHhhh---cc
Q psy744 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLD----------VTLKEANE---HK 290 (405)
Q Consensus 224 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~----------~~v~~~~~---~~ 290 (405)
++.++.+++++.+|++.|.+.+++.+||+|++|+++|+++..|+++........... ..+.+++. ..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 81 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISY 81 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhh
Confidence 578999999999999999999999999999999999999999999877643211100 11223321 01
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDED 327 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 327 (405)
+.|..+++++.+++++.+|++.|.+++++.+||+|++
T Consensus 82 ~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 82 GGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred cccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 1234678899999999999999999999999999854
No 119
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.26 E-value=5.9e-11 Score=99.69 Aligned_cols=133 Identities=20% Similarity=0.296 Sum_probs=96.8
Q ss_pred CCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCC
Q psy744 94 SAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIH 173 (405)
Q Consensus 94 s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~ 173 (405)
|+++.+++++.++.+|++.|.++++..+||+|++ ++++|+++..|+.+.+...+..+. ...+.. .
T Consensus 1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~--~~~~~~-------~----- 65 (135)
T cd04586 1 TTDVVTVSPETSVAEAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRR--ARWLDL-------L----- 65 (135)
T ss_pred CCCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchh--hhHHHH-------h-----
Confidence 4578899999999999999999999999999987 899999999999975543211000 000000 0
Q ss_pred EEEEEeCCCCEEEEEeHHHH-HHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEE
Q psy744 174 RLPVIDEMGNVLYILTHKRI-LRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMT 252 (405)
Q Consensus 174 ~lpVvd~~~~vvgilt~~dI-l~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 252 (405)
.. ..+. ..+.. ....++.++| ..++.++.+++++.++++.|.+.+.+.+||+
T Consensus 66 ------~~--------~~~~~~~~~~----------~~~~~v~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vv 118 (135)
T cd04586 66 ------AG--------AEELAAAFVR----------SHGRKVADVM---TRPVVTVGEDTPLAEVAELMEEHRIKRVPVV 118 (135)
T ss_pred ------cc--------hHHHHHHHHH----------hcCCCHHHHh---CCCceEeCCCCcHHHHHHHHHHcCCCccCEe
Confidence 00 0000 00000 0123566666 3678999999999999999999999999999
Q ss_pred CCCCcEEEEEeHHHHHH
Q psy744 253 DSEGHLVDIFAKFDVIN 269 (405)
Q Consensus 253 d~~g~lvGivt~~Dl~~ 269 (405)
| +|+++|++|..|+++
T Consensus 119 d-~g~~~Gvit~~di~~ 134 (135)
T cd04586 119 R-GGRLVGIVSRADLLR 134 (135)
T ss_pred c-CCEEEEEEEhHhhhc
Confidence 9 899999999999875
No 120
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.26 E-value=7e-11 Score=95.96 Aligned_cols=111 Identities=17% Similarity=0.316 Sum_probs=87.8
Q ss_pred CeEEEeCCccHHHHHHHHHHcC-CceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNG-IRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHR 174 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~-i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~ 174 (405)
++.+++++.++.+|++.|.+++ ...+||+|.+ ++++|+++..|++....... .
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~--~----------------------- 55 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQW--A----------------------- 55 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhc--c-----------------------
Confidence 5678899999999999998775 8899999987 89999999999886442110 0
Q ss_pred EEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC
Q psy744 175 LPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS 254 (405)
Q Consensus 175 lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 254 (405)
..++.++|.. ...+.++.+++++.++++.|.+++.+.+||+|+
T Consensus 56 ------------------------------------~~~v~~~~~~-~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~ 98 (114)
T cd04801 56 ------------------------------------QTTVIQVMTP-AAKLVTVLSEESLAEVLKLLEEQGLDELAVVED 98 (114)
T ss_pred ------------------------------------ccchhhhhcc-cccceEECCCCcHHHHHHHHHHCCCCeeEEEcC
Confidence 1123333310 123568899999999999999999999999998
Q ss_pred CCcEEEEEeHHHHHH
Q psy744 255 EGHLVDIFAKFDVIN 269 (405)
Q Consensus 255 ~g~lvGivt~~Dl~~ 269 (405)
+|+++|+++.+|+++
T Consensus 99 ~~~~~Gvl~~~di~~ 113 (114)
T cd04801 99 SGQVIGLITEADLLR 113 (114)
T ss_pred CCcEEEEEeccceec
Confidence 899999999999864
No 121
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=1.3e-10 Score=95.81 Aligned_cols=123 Identities=30% Similarity=0.408 Sum_probs=94.9
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.+++...+||+|.+.++++|+++..|++.++..........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~--------------------- 60 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIK--------------------- 60 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhcccc---------------------
Confidence 56889999999999999999999999999985589999999999997654211000000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
.. .+ ......++.+++ ..++.++.+++++.++++.|.+.+.+.+||+|++
T Consensus 61 -~~--~~------------------------~~~~~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~ 110 (125)
T cd04631 61 -TG--NG------------------------LEAINEPVRSIM---TRNVITITPDDSIKDAAELMLEKRVGGLPVVDDD 110 (125)
T ss_pred -cc--cc------------------------chhhhcCHHHHh---cCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCC
Confidence 00 00 000123455555 2678999999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+||..|+++
T Consensus 111 ~~~~Gvit~~di~~ 124 (125)
T cd04631 111 GKLVGIVTERDLLK 124 (125)
T ss_pred CcEEEEEEHHHhhc
Confidence 99999999999975
No 122
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.25 E-value=4.1e-11 Score=94.70 Aligned_cols=94 Identities=16% Similarity=0.283 Sum_probs=77.5
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++++++++.+|++.|.++++..+||+|++ ++++|++|..|+........-.+..++.+.. ..|.+++++++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~v~~~~~l~~a~-----~~m~~~~~~~l 75 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKSEVVTATKRTTVSECA-----QKMKRNRIEQI 75 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCCCcEEecCCCCHHHHH-----HHHHHhCCCee
Confidence 56889999999999999999999999999987 8999999999998654311223334444443 38999999999
Q ss_pred EEEeCCCCEEEEEeHHHHHH
Q psy744 176 PVIDEMGNVLYILTHKRILR 195 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~ 195 (405)
||++++|+++|++|.+|+++
T Consensus 76 pVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 76 PIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred eEECCCCcEEEEEEHHHhhc
Confidence 99998899999999999874
No 123
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=1.7e-10 Score=94.71 Aligned_cols=120 Identities=21% Similarity=0.314 Sum_probs=94.1
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.++++..+||+|++ ++++|+++..|+.+.+........ .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~------~---------------- 58 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNG------E---------------- 58 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhcccccccc------c----------------
Confidence 56889999999999999999999999999987 899999999999876542211000 0
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
+.. ......++.+++ ..++.++.+++++.++++.|.+.+.+.+||+|++
T Consensus 59 ------~~~----------------------~~~~~~~v~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~ 107 (122)
T cd04803 59 ------ESL----------------------TKERDVPVAEVM---KTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDK 107 (122)
T ss_pred ------ccc----------------------ccccCcCHHHhh---CCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC
Confidence 000 000122455555 3678899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|++|..|++.
T Consensus 108 ~~~~Gvit~~dl~~ 121 (122)
T cd04803 108 GTLVGIITRSDFLR 121 (122)
T ss_pred CCEEEEEEHHHhhc
Confidence 99999999999874
No 124
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.25 E-value=1.6e-10 Score=93.90 Aligned_cols=110 Identities=16% Similarity=0.283 Sum_probs=87.0
Q ss_pred CeEEEeCCccHHHHHHHHHHcC-CceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNG-IRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHR 174 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~-i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~ 174 (405)
++.+++.+.++.+|++.|.+++ ...+||.|. ++++|+++..|+++.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~------------------------ 55 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGKDL------------------------ 55 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCCCc------------------------
Confidence 4578899999999999999888 677787774 8999999999998654321000
Q ss_pred EEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCC--CCHHHHHHHHHhcCCCEEEEE
Q psy744 175 LPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEE--TSIIHALRKFLERRVSALPMT 252 (405)
Q Consensus 175 lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~--~~l~~a~~~m~~~~~~~lpVv 252 (405)
...++.++| ..++.++.++ +++.++++.|.+++...+||+
T Consensus 56 -----------------------------------~~~~i~~~~---~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVv 97 (115)
T cd04620 56 -----------------------------------SDLPIGEVM---TQPVVTLQESEIQDIFTALSLFRQHQIRHLPVL 97 (115)
T ss_pred -----------------------------------cccCHHHhc---CCCcEEEecccccCHHHHHHHHHHhCCceEEEE
Confidence 012344454 2567778776 789999999999999999999
Q ss_pred CCCCcEEEEEeHHHHHH
Q psy744 253 DSEGHLVDIFAKFDVIN 269 (405)
Q Consensus 253 d~~g~lvGivt~~Dl~~ 269 (405)
|++|+++|+||.+|+++
T Consensus 98 d~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 98 DDQGQLIGLVTAESIRQ 114 (115)
T ss_pred cCCCCEEEEEEhHHhhc
Confidence 98899999999999975
No 125
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=9.3e-11 Score=94.32 Aligned_cols=105 Identities=22% Similarity=0.235 Sum_probs=88.4
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.+++...+||+|.+ ++++|+++..|++... +
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~------~------------------------ 51 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD------P------------------------ 51 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc------c------------------------
Confidence 46789999999999999999999999999986 8999999999987310 0
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..++.+++ ..++.++.+++++.++++.|.+.+...+||+|++
T Consensus 52 -----------------------------------~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~ 93 (108)
T cd04596 52 -----------------------------------DTTIEKVM---TKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDN 93 (108)
T ss_pred -----------------------------------cccHHHHh---cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC
Confidence 11233444 2567889999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 94 ~~~~G~it~~di~~ 107 (108)
T cd04596 94 KKLLGIISRQDVLK 107 (108)
T ss_pred CCEEEEEEHHHhhc
Confidence 99999999999874
No 126
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.3e-10 Score=93.76 Aligned_cols=109 Identities=22% Similarity=0.268 Sum_probs=89.6
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+.++++++.++.+|++.|.+.+...+||+|.+ ++++|+++..|+.+.+.... .
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~--~------------------------ 54 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGG--P------------------------ 54 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcC--C------------------------
Confidence 45778999999999999999999999999986 88999999999986554210 0
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..++.+++ ..++.++.+++++.++++.|.+++...+||+|++
T Consensus 55 -----------------------------------~~~v~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~ 96 (111)
T cd04639 55 -----------------------------------DAPVRGVM---RRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS 96 (111)
T ss_pred -----------------------------------CCcHHHHh---cCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCC
Confidence 11233444 2577899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|++|..|+..
T Consensus 97 ~~~~G~it~~dl~~ 110 (111)
T cd04639 97 GRLVGLVTLENVGE 110 (111)
T ss_pred CCEEEEEEHHHhhc
Confidence 99999999999864
No 127
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.24 E-value=1.2e-10 Score=94.12 Aligned_cols=111 Identities=21% Similarity=0.289 Sum_probs=91.8
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++.++.++.+|++.|.++++..+||+|++ ++++|+++..|+.+++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~-------------------------- 54 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSL-------------------------- 54 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccc--------------------------
Confidence 56789999999999999999999999999987 899999999999865421100
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC-
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS- 254 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~- 254 (405)
....++.+++ ..++.++.+++++.++++.|...+.+.+||+|+
T Consensus 55 ---------------------------------~~~~~v~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~ 98 (114)
T cd04613 55 ---------------------------------YDLVVASDIM---TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDD 98 (114)
T ss_pred ---------------------------------cccEEHHHhc---cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCC
Confidence 0012445555 267889999999999999999999999999997
Q ss_pred CCcEEEEEeHHHHHH
Q psy744 255 EGHLVDIFAKFDVIN 269 (405)
Q Consensus 255 ~g~lvGivt~~Dl~~ 269 (405)
+|+++|+++..|++.
T Consensus 99 ~~~~~Gvvt~~di~~ 113 (114)
T cd04613 99 PGKLLGILSRSDLLS 113 (114)
T ss_pred CCEEEEEEEhHHhhc
Confidence 789999999999874
No 128
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.24 E-value=1.7e-10 Score=92.52 Aligned_cols=106 Identities=19% Similarity=0.326 Sum_probs=87.9
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++++.++.+|++.|.++++..+||+|++ ++++|+++..|+......
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~----------------------------- 52 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYKE----------------------------- 52 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhhc-----------------------------
Confidence 46778999999999999999999999999987 889999999998853311
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..++.++| ...+.++.+++++.++++.|.+.+..++||++++
T Consensus 53 -----------------------------------~~~v~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~ 94 (109)
T cd04583 53 -----------------------------------AKSLEDIM---LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDED 94 (109)
T ss_pred -----------------------------------CCcHhHhh---cCCceEECCCCcHHHHHHHHHHcCCceeeEECCC
Confidence 01223333 2567889999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++.+|+++
T Consensus 95 g~~~Gvit~~~l~~ 108 (109)
T cd04583 95 GKLVGLITRSSLVD 108 (109)
T ss_pred CeEEEEEehHHhhc
Confidence 99999999999864
No 129
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.24 E-value=9.2e-11 Score=122.30 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=107.4
Q ss_pred HHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHH
Q psy744 78 FVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEE 157 (405)
Q Consensus 78 ~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~ 157 (405)
-++.++..++.|+| .++..+++++.++.+|.+.|.+++.+.+||+|++ ++++|++|..|+.+.+......
T Consensus 440 ~~~~L~~~~V~dim--~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~------- 509 (574)
T PRK01862 440 ERERLRTTQMRELI--QPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDT------- 509 (574)
T ss_pred hhhHHhhCcHHHHh--cCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhccccc-------
Confidence 35567788999999 5567889999999999999999999999999987 8999999999998644221000
Q ss_pred HhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHH
Q psy744 158 LEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHA 237 (405)
Q Consensus 158 l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a 237 (405)
...++.++| .+++.++++++++.++
T Consensus 510 ----------------------------------------------------~~~~v~dim---~~~~~~v~~d~~L~~a 534 (574)
T PRK01862 510 ----------------------------------------------------TDKTAADYA---HTPFPLLTPDMPLGDA 534 (574)
T ss_pred ----------------------------------------------------ccchHHHhc---cCCCeeECCCCCHHHH
Confidence 012445555 3677899999999999
Q ss_pred HHHHHhcCCCEEEEECCC--CcEEEEEeHHHHHHHHHh
Q psy744 238 LRKFLERRVSALPMTDSE--GHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 238 ~~~m~~~~~~~lpVvd~~--g~lvGivt~~Dl~~~~~~ 273 (405)
++.|.+++.+.+||+|++ ++++|+||.+|+++.+.+
T Consensus 535 l~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 535 LEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred HHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 999999999999999876 589999999999988654
No 130
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=2e-10 Score=92.78 Aligned_cols=110 Identities=15% Similarity=0.273 Sum_probs=90.6
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++.+.++.+|++.|.+++...+||+|++ ++++|++|..|+++.+.... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~-~------------------------- 54 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGI-D------------------------- 54 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccC-C-------------------------
Confidence 46788999999999999999999999999987 89999999999986543210 0
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
....+.++| ..++.++.+++++.++++.|.+++...+||++++
T Consensus 55 ----------------------------------~~~~v~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~ 97 (112)
T cd04624 55 ----------------------------------LDTPVSEIM---TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKG 97 (112)
T ss_pred ----------------------------------CccCHHHhc---cCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCC
Confidence 011344444 2568899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 98 g~~~Gilt~~dl~~ 111 (112)
T cd04624 98 GELVGVISIRDLVR 111 (112)
T ss_pred CcEEEEEEHHHhcc
Confidence 99999999999864
No 131
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.23 E-value=1.5e-10 Score=92.50 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=85.6
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++++.++.+|++.|.+++...+||+|++ ++++|++|..|+++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~------------------------------ 50 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG------------------------------ 50 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc------------------------------
Confidence 45788899999999999999999999999876 89999999999884210
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
.++.+++ .+.+..+.+++++.++++.|.+++...+||+|++
T Consensus 51 ------------------------------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~ 91 (106)
T cd04582 51 ------------------------------------GCCGDHA---EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDED 91 (106)
T ss_pred ------------------------------------cchhhhc---ccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCC
Confidence 0122222 2456778999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++.+|++.
T Consensus 92 ~~~~Gvi~~~~l~~ 105 (106)
T cd04582 92 GRYVGEVTQRSIAD 105 (106)
T ss_pred CcEEEEEEHHHhhc
Confidence 99999999999864
No 132
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.23 E-value=2.4e-10 Score=92.39 Aligned_cols=111 Identities=15% Similarity=0.218 Sum_probs=90.3
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.++.++.++.+|++.|.+++...+||+|. ++++|+++..|++..+......+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~------------------------ 55 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDP------------------------ 55 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCc------------------------
Confidence 5678999999999999999999999999996 89999999999985332110000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...++.+++ ..++.++.+++++.++++.|.+++...+||++++
T Consensus 56 ----------------------------------~~~~v~~i~---~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~ 98 (113)
T cd04587 56 ----------------------------------ESTLVERVM---TPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKS 98 (113)
T ss_pred ----------------------------------CcCCHHHhc---CCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCC
Confidence 012455555 2567889999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+|+..|++.
T Consensus 99 ~~~~Gvvs~~dl~~ 112 (113)
T cd04587 99 GQVVGLLDVTKLTH 112 (113)
T ss_pred CCEEEEEEHHHhcc
Confidence 99999999999864
No 133
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.22 E-value=2.4e-10 Score=96.29 Aligned_cols=129 Identities=16% Similarity=0.217 Sum_probs=94.7
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCC--CCCHHHHhhccHHHHHHhcCCC
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSS--SITMEELEEHKLETNLIDYKIH 173 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~--~~~~~~l~~~~i~~~l~~~~i~ 173 (405)
+++++..+.++.+|++.|.+++...+||+|++ ++++|+++..|+++.+....... ..+ ..+. .
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~-~~~~-----~-------- 66 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKS-IKMK-----R-------- 66 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhh-hhhh-----h--------
Confidence 45778999999999999999999999999987 89999999999997654211000 000 0000 0
Q ss_pred EEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCC-C-ccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEE
Q psy744 174 RLPVIDEMGNVLYILTHKRILRFLFLYINDLP-K-PSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPM 251 (405)
Q Consensus 174 ~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~-~-~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpV 251 (405)
...... . ......++.++| ..++..+.+++++.++++.|.+.+.+.+||
T Consensus 67 --------------------------~~~~~~~~~~~~~~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~l~V 117 (135)
T cd04621 67 --------------------------KAGQKRYRYVKEVPLVAEDIM---TEEIITVSPNDDVVDAAKLMLEANISGLPV 117 (135)
T ss_pred --------------------------hcccccccccccccccHHHhc---CCCCeEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 000000 0 001133577777 367889999999999999999999999999
Q ss_pred ECCCCcEEEEEeHHHHHH
Q psy744 252 TDSEGHLVDIFAKFDVIN 269 (405)
Q Consensus 252 vd~~g~lvGivt~~Dl~~ 269 (405)
+++ |+++|+|+..|+++
T Consensus 118 v~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 118 VDN-DNIVGVITKTDICR 134 (135)
T ss_pred EeC-CEEEEEEEHHHHhh
Confidence 986 89999999999875
No 134
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=2.1e-10 Score=92.95 Aligned_cols=112 Identities=27% Similarity=0.340 Sum_probs=90.8
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++.+.++.+|++.|.+++...+||+|++ ++++|+++..|+++.+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~------------------------ 56 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHC------------------------ 56 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhcc------------------------
Confidence 46789999999999999999999999999987 89999999999986553210000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
....++.++| ..++.++.+++++.++++.|.+++.+.+||+|+
T Consensus 57 ---------------------------------~~~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~- 99 (114)
T cd04629 57 ---------------------------------DGVATVRDIM---TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD- 99 (114)
T ss_pred ---------------------------------CCCccHHHHh---ccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-
Confidence 0012344454 256788999999999999999999999999997
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|++|..|+++
T Consensus 100 ~~~~Gvit~~di~~ 113 (114)
T cd04629 100 GKLVGQISRRDVLR 113 (114)
T ss_pred CEEEEEEEHHHHhc
Confidence 89999999999975
No 135
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=2e-10 Score=92.76 Aligned_cols=109 Identities=21% Similarity=0.361 Sum_probs=89.6
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++.+.++.+|++.|.+++...+||+|++ ++++|+++..|+..+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~--------------------------- 53 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFES--------------------------- 53 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhcc---------------------------
Confidence 56789999999999999999999999999987 89999999999985432110
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
....++.++| .+++.++.+++++.++++.|.+++...+||+|+
T Consensus 54 ---------------------------------~~~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~- 96 (111)
T cd04626 54 ---------------------------------FLEKKVFNIV---SQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD- 96 (111)
T ss_pred ---------------------------------cccCcHHHHh---cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-
Confidence 0012344444 267889999999999999999999999999997
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+||..|++.
T Consensus 97 ~~~~G~it~~di~~ 110 (111)
T cd04626 97 NKLIGVVRTKDILD 110 (111)
T ss_pred CEEEEEEEhHHhcc
Confidence 89999999999864
No 136
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=4.4e-10 Score=92.34 Aligned_cols=120 Identities=19% Similarity=0.331 Sum_probs=93.7
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.++++..+||+|+ ++++|+++..|+.+.+............++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~---------------- 63 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLA---------------- 63 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHH----------------
Confidence 5688999999999999999999999999996 8999999999999766542211110000000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
....++.+++ ..+++.+.+++++.++++.|.+++...+||+|++
T Consensus 64 ---------------------------------~~~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~ 107 (122)
T cd04637 64 ---------------------------------TLNRRAHQIM---TRDPITVSPDTPVDEASKLLLENSISCLPVVDEN 107 (122)
T ss_pred ---------------------------------HHHhHHHHhh---cCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCC
Confidence 0012345555 2678899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 108 ~~~~Gvit~~dll~ 121 (122)
T cd04637 108 GQLIGIITWKDLLK 121 (122)
T ss_pred CCEEEEEEHHHhhh
Confidence 99999999999875
No 137
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.22 E-value=2.8e-10 Score=92.10 Aligned_cols=111 Identities=21% Similarity=0.324 Sum_probs=91.0
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.++.++.++.++.+.|.+.+...+||+|.+ ++++|+++..++.+.+.......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~------------------------ 57 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDIL------------------------ 57 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccc------------------------
Confidence 45678999999999999999899999999987 89999999999987654321000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..++.++| ..++.++.+++++.++++.|.+.+...+||++++
T Consensus 58 -----------------------------------~~~v~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~ 99 (114)
T cd04604 58 -----------------------------------TLPVADVM---TRNPKTIDPDALAAEALELMEENKITALPVVDDN 99 (114)
T ss_pred -----------------------------------cCCHHHhh---ccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCC
Confidence 11344454 2567789999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+|+..|+++
T Consensus 100 ~~~iG~it~~di~~ 113 (114)
T cd04604 100 GRPVGVLHIHDLLR 113 (114)
T ss_pred CCEEEEEEHHHhhc
Confidence 99999999999974
No 138
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=1.4e-10 Score=95.29 Aligned_cols=120 Identities=22% Similarity=0.327 Sum_probs=92.5
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++.++.++.+|++.|.++++..+||+|.+ ++++|+++..|+++..... ... ....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~--~~~---~~~~---------------- 59 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVR--TSV---EDQQ---------------- 59 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCC-CcEEEEEEcHHHHhhcccc--ccc---cchh----------------
Confidence 57889999999999999999999999999987 8999999999998542100 000 0000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
. .. .....++.+++ ..++.++.+++++.++++.|.+.+.+.+||+|++
T Consensus 60 -----------------~----~~--------~~~~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~ 107 (122)
T cd04635 60 -----------------R----TQ--------TKASPTVEKIM---STPVYSVTPDDSIATAVELMLEHDIGRLPVVNEK 107 (122)
T ss_pred -----------------h----hh--------hhccCcHHHHh---cCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC
Confidence 0 00 00122455555 3678899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 108 g~~~Gvit~~dl~~ 121 (122)
T cd04635 108 DQLVGIVDRHDVLK 121 (122)
T ss_pred CcEEEEEEhHHhhc
Confidence 99999999999875
No 139
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=2.9e-10 Score=94.41 Aligned_cols=124 Identities=21% Similarity=0.268 Sum_probs=93.2
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++.++.++.+|++.|.++++..+||+|++ ++++|++|..|+...+........ .....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~--~~~~~---------------- 62 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKAR--TGDRS---------------- 62 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcc--hhhhh----------------
Confidence 56789999999999999999999999999987 899999999999876532110000 00000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEEC--
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTD-- 253 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-- 253 (405)
.. .......++.++| ..+++++.+++++.++++.|.+.+...+||++
T Consensus 63 ---------------~~-------------~~~~~~~~~~~~~---~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~ 111 (128)
T cd04632 63 ---------------GE-------------KERMLDLPVYDAM---SSPVITASPNDSVRDAVDRMLENDDSSVVVVTPD 111 (128)
T ss_pred ---------------hh-------------hhhhccCcHHHHh---cCCCceECCCCcHHHHHHHHHhCCCCeEeEeccC
Confidence 00 0001123456666 36788999999999999999999999999984
Q ss_pred CCCcEEEEEeHHHHHH
Q psy744 254 SEGHLVDIFAKFDVIN 269 (405)
Q Consensus 254 ~~g~lvGivt~~Dl~~ 269 (405)
++|+++|+||.+|+++
T Consensus 112 ~~~~~~Gvit~~di~~ 127 (128)
T cd04632 112 DDTKVVGILTKKDVLR 127 (128)
T ss_pred CCCcEEEEEEhHhhhc
Confidence 4689999999999874
No 140
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.21 E-value=4.7e-10 Score=90.31 Aligned_cols=109 Identities=17% Similarity=0.277 Sum_probs=90.6
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++++.++.+|++.|.+++...+||+|+ ++++|+++..|+.++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~-------------------------- 53 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPD-------------------------- 53 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCC--------------------------
Confidence 4678999999999999999999999999987 899999999999865532100
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...++.++| ..++.++.+++++.++++.|.+.+.+.+||+|++
T Consensus 54 ----------------------------------~~~~v~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~ 96 (111)
T cd04611 54 ----------------------------------LQTPVGEVM---SSPLLTVPADTSLYDARQLMREHGIRHLVVVDDD 96 (111)
T ss_pred ----------------------------------CCcCHHHhc---CCCceEECCCCCHHHHHHHHHHcCCeEEEEECCC
Confidence 012344444 2578889999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++.+|+++
T Consensus 97 ~~~~Gvi~~~di~~ 110 (111)
T cd04611 97 GELLGLLSQTDLLQ 110 (111)
T ss_pred CcEEEEEEhHHhhc
Confidence 99999999999874
No 141
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.21 E-value=5.5e-10 Score=89.88 Aligned_cols=108 Identities=23% Similarity=0.387 Sum_probs=89.9
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++.+.++.+|++.|.+++++.+||+|+ ++++|+++..|+++...... +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~--~------------------------ 53 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGL--E------------------------ 53 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccc--c------------------------
Confidence 5688999999999999999999999999998 79999999999986533210 0
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..++.+++ ..++.++.++.++.++++.|.+.+...+||++++
T Consensus 54 -----------------------------------~~~v~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~ 95 (110)
T cd04588 54 -----------------------------------LAKVKDVM---TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE 95 (110)
T ss_pred -----------------------------------ccCHHHHh---cCCceEECCCCCHHHHHHHHHhcCCCEEEEECCC
Confidence 01233343 2578899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 96 ~~~~G~i~~~dl~~ 109 (110)
T cd04588 96 GRPVGIITRTDILR 109 (110)
T ss_pred CCEEEEEEhHHhhc
Confidence 99999999999874
No 142
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.21 E-value=1e-09 Score=110.56 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=103.8
Q ss_pred HHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHH
Q psy744 78 FVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEE 157 (405)
Q Consensus 78 ~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~ 157 (405)
..+.++..+.+++| ..+++++.++.++.+|++.|.++++..+||+|+ ++++|++|..|+... ..
T Consensus 81 qae~v~~VKv~eim--~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~------~~------ 144 (475)
T TIGR01303 81 VKQTVAFVKSRDLV--LDTPITLAPHDTVSDAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGV------DR------ 144 (475)
T ss_pred HHHHHhhcchhhcc--ccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcC------CC------
Confidence 34455666777887 567899999999999999999999999999986 689999999997410 00
Q ss_pred HhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHH
Q psy744 158 LEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHA 237 (405)
Q Consensus 158 l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a 237 (405)
..++.++| ..+++++.+++++.+|
T Consensus 145 -----------------------------------------------------~~~V~dIM---t~~litv~~~~sL~eA 168 (475)
T TIGR01303 145 -----------------------------------------------------FTQVRDIM---STDLVTAPADTEPRKA 168 (475)
T ss_pred -----------------------------------------------------CCCHHHHc---cCCceEeCCCCcHHHH
Confidence 12456666 3688999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 238 LRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 238 ~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+++|.++++..+||+|++|+++|+||.+||++.....
T Consensus 169 l~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 169 FDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT 205 (475)
T ss_pred HHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence 9999999999999999889999999999999866543
No 143
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.20 E-value=5.1e-10 Score=90.23 Aligned_cols=109 Identities=18% Similarity=0.274 Sum_probs=89.5
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++.+.++.+|.+.|.+++...+||+|+ ++++|+++..|++..+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~------------------------- 54 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLD------------------------- 54 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCC-------------------------
Confidence 5678999999999999999999999999997 8999999999998543311000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...++.+++ ..++.++.+++++.++++.|.+.+.+.+||+++
T Consensus 55 ----------------------------------~~~~i~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~- 96 (111)
T cd04800 55 ----------------------------------PDTPVSEVM---TAPPITIPPDATVFEALLLMLERGIHHLPVVDD- 96 (111)
T ss_pred ----------------------------------ccCCHHHHh---CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-
Confidence 011344444 257889999999999999999999999999987
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++.+|+++
T Consensus 97 ~~~~Giit~~di~~ 110 (111)
T cd04800 97 GRLVGVISATDLLR 110 (111)
T ss_pred CEEEEEEEHHHhhc
Confidence 89999999999975
No 144
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=2e-10 Score=95.25 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=86.6
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHH--hhCCCCCCHHHHhhccHHHHHHhcCCC
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQM--YYTSSSITMEELEEHKLETNLIDYKIH 173 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~--~~~~~~~~~~~l~~~~i~~~l~~~~i~ 173 (405)
+++++..+.++.+|++.|.+++.+.+||+|++ ++++|+++..|+...... .....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~---------------------- 58 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGG---------------------- 58 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcC----------------------
Confidence 46789999999999999999999999999987 899999999999852210 00000
Q ss_pred EEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCe--eEE----cCCCCHHHHHHHHHhcCCC
Q psy744 174 RLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENV--ETV----AEETSIIHALRKFLERRVS 247 (405)
Q Consensus 174 ~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~--~~v----~~~~~l~~a~~~m~~~~~~ 247 (405)
......+++++|. .+. ..+ .+++++.++++.|.+++.+
T Consensus 59 ---------------------------------~~~~~~~v~~im~---~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~ 102 (126)
T cd04640 59 ---------------------------------ISRSELTVADVMT---PKEDLKALDLEELENASVGDVVETLKASGRQ 102 (126)
T ss_pred ---------------------------------CCchheEHHHhcC---chhhhccccHHHhccCcHHHHHHHHHHCCCc
Confidence 0001224555552 222 222 3688999999999999999
Q ss_pred EEEEECCC-CcEEEEEeHHHHHH
Q psy744 248 ALPMTDSE-GHLVDIFAKFDVIN 269 (405)
Q Consensus 248 ~lpVvd~~-g~lvGivt~~Dl~~ 269 (405)
.+||+|++ |+++|+||..|+++
T Consensus 103 ~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 103 HALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred eEEEEECCCCEEEEEEeHHHHhh
Confidence 99999986 79999999999975
No 145
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=5.7e-10 Score=89.89 Aligned_cols=108 Identities=20% Similarity=0.347 Sum_probs=90.0
Q ss_pred CCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCE
Q psy744 95 AKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHR 174 (405)
Q Consensus 95 ~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~ 174 (405)
+++++++.+.++.+|.+.|.+++...+||+|. ++++|+++..|+.+.+.... +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~--~----------------------- 54 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGL--G----------------------- 54 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhccc--c-----------------------
Confidence 46789999999999999999999999999998 89999999999885442110 0
Q ss_pred EEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC
Q psy744 175 LPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS 254 (405)
Q Consensus 175 lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 254 (405)
..++.++| ..++.++.+++++.++++.|.+.+.+.+||++
T Consensus 55 ------------------------------------~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~- 94 (110)
T cd04595 55 ------------------------------------HAPVKDYM---STDVVTVPPDTPLSEVQELMVEHDIGRVPVVE- 94 (110)
T ss_pred ------------------------------------cCcHHHHh---cCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-
Confidence 12344444 25778999999999999999999999999999
Q ss_pred CCcEEEEEeHHHHHH
Q psy744 255 EGHLVDIFAKFDVIN 269 (405)
Q Consensus 255 ~g~lvGivt~~Dl~~ 269 (405)
+|+++|+||..|+++
T Consensus 95 ~~~~~Gvvt~~di~~ 109 (110)
T cd04595 95 DGRLVGIVTRTDLLR 109 (110)
T ss_pred CCEEEEEEEhHHhhc
Confidence 789999999999864
No 146
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.20 E-value=3.9e-10 Score=92.26 Aligned_cols=120 Identities=25% Similarity=0.330 Sum_probs=93.1
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++.+.++.+|++.|.++++..+||+|. ++++|+++..|+..+......... ..+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~--~~~~~---------------- 61 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLD--IWELY---------------- 61 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhccccccc--chhhh----------------
Confidence 5678999999999999999999999999998 899999999999876532110000 00000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
.. ....++.++| .+++.++.+++++.++++.|.+.+.+.+||+|++
T Consensus 62 -------------------~~------------~~~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~ 107 (122)
T cd04585 62 -------------------YL------------LSKIKVSDIM---TRDPITVSPDASVEEAAELMLERKISGLPVVDDQ 107 (122)
T ss_pred -------------------hh------------hcccCHHHhc---cCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCC
Confidence 00 0022455555 2578899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+||..|+++
T Consensus 108 ~~~~Gvvt~~di~~ 121 (122)
T cd04585 108 GRLVGIITESDLFR 121 (122)
T ss_pred CcEEEEEEHHHhhh
Confidence 99999999999975
No 147
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=3.1e-10 Score=94.83 Aligned_cols=130 Identities=22% Similarity=0.336 Sum_probs=95.0
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++.++.++.+|++.|.++++..+||+|++ ++++|+++..|++.++...........
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~-------------------- 60 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTL-------------------- 60 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccc--------------------
Confidence 46789999999999999999999999999987 899999999999976653211000000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
.....+.. .+..+.+ ...++.+++ .+++..+.+++++.++++.|.+.+.+.+||+|+
T Consensus 61 ------~~~~~~~~-~~~~~~~------------~~~~v~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~- 117 (132)
T cd04636 61 ------LYSVIFLD-ESKIKKL------------LGKKVEEIM---TKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD- 117 (132)
T ss_pred ------cccccccc-hHHHHHH------------cCCCHHHhc---cCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-
Confidence 00000000 1111111 122566666 367889999999999999999999999999998
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|++|..|+++
T Consensus 118 ~~~iGvit~~dl~~ 131 (132)
T cd04636 118 GKLVGIISRGDIIR 131 (132)
T ss_pred CEEEEEEEHHHhhc
Confidence 99999999999875
No 148
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.19 E-value=4.7e-10 Score=90.69 Aligned_cols=111 Identities=23% Similarity=0.288 Sum_probs=89.4
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.+++...+||+|+ ++++|+++..|++.........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~------------------------- 54 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRD------------------------- 54 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCC-------------------------
Confidence 5688999999999999999999999999997 8999999999987221100000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
....++.++| ...+.++.+++++.++++.|...+.+++||++++
T Consensus 55 ---------------------------------~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~ 98 (113)
T cd04622 55 ---------------------------------PDTTTVGDVM---TRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDD 98 (113)
T ss_pred ---------------------------------cccCCHHHhc---cCCccEECCCCCHHHHHHHHHHcCCCeeeEECCC
Confidence 0011345555 2578889999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 99 ~~~~G~it~~di~~ 112 (113)
T cd04622 99 GRLVGIVSLGDLAR 112 (113)
T ss_pred CcEEEEEEHHHhhc
Confidence 99999999999865
No 149
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.18 E-value=6.2e-10 Score=89.91 Aligned_cols=110 Identities=19% Similarity=0.269 Sum_probs=89.2
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++.++.++.+|++.|.+++...+||+|+ ++++|+++..|++..+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~------------------------ 55 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKP------------------------ 55 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCc------------------------
Confidence 5688999999999999999999999999997 49999999999997553210000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...++.+++ ..++..+.+++++.++++.|.+.+...+||+|++
T Consensus 56 ----------------------------------~~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~ 98 (112)
T cd04802 56 ----------------------------------REVPVGEVM---STPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD 98 (112)
T ss_pred ----------------------------------ccCCHHHhc---CCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC
Confidence 012344455 2578889999999999999999999999999865
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
+++|+|+..|+++
T Consensus 99 -~~~Gvi~~~di~~ 111 (112)
T cd04802 99 -ELVGIVTTTDIVM 111 (112)
T ss_pred -EEEEEEEhhhhhc
Confidence 9999999999864
No 150
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.18 E-value=7.2e-10 Score=89.44 Aligned_cols=109 Identities=16% Similarity=0.255 Sum_probs=89.2
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+.++++.+.++.+|.+.|.+++...+||+|+ ++++|+++..|+.+.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~------------------------- 54 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLP------------------------- 54 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCC-------------------------
Confidence 4678899999999999999999999999998 6899999999998654311000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...++.++| ..++..+++++++.++++.|.+++...+||+|+
T Consensus 55 ----------------------------------~~~~i~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~- 96 (111)
T cd04589 55 ----------------------------------SSTPVGEIA---TFPLITVDPDDFLFNALLLMTRHRIHRVVVREG- 96 (111)
T ss_pred ----------------------------------CCCCHHHHh---CCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-
Confidence 022344555 257889999999999999999999999999985
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 97 ~~~~G~it~~dl~~ 110 (111)
T cd04589 97 GEVVGVLEQTDLLS 110 (111)
T ss_pred CEEEEEEEhHHhhc
Confidence 89999999999875
No 151
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=5.3e-10 Score=90.28 Aligned_cols=110 Identities=19% Similarity=0.320 Sum_probs=87.1
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
.+.++.++.++.+|++.|.+++...++|.+. ++++|++|..|+++.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~------------------------- 54 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMER--GELVGLLTFREVLQAMAQHGAG------------------------- 54 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHHHHHHHhcCCc-------------------------
Confidence 3678899999999999999888877776654 8999999999998665321000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
+...++.++| ...+.++.+++++.++++.|.+++...+||+| +
T Consensus 55 ---------------------------------~~~~~v~~~~---~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~ 97 (112)
T cd04625 55 ---------------------------------VLDTTVRAIM---NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-G 97 (112)
T ss_pred ---------------------------------hhcCCHHHHh---CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-C
Confidence 0012344555 25678899999999999999999999999998 5
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|++|.+|+++
T Consensus 98 ~~~~Gvvt~~dl~~ 111 (112)
T cd04625 98 GTLLGVISFHDVAK 111 (112)
T ss_pred CEEEEEEEHHHhhc
Confidence 89999999999975
No 152
>PRK11573 hypothetical protein; Provisional
Probab=99.17 E-value=5.3e-10 Score=111.40 Aligned_cols=174 Identities=13% Similarity=0.136 Sum_probs=129.4
Q ss_pred chhHHHHHHh--hhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCC
Q psy744 73 GGNQIFVKFF--KFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTS 150 (405)
Q Consensus 73 ~~~~~~~~~l--~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~ 150 (405)
.+.+.+.+-| +.+++.|+|..-.++++++.+.++.++++.+.+++...+||++++..+++|++..+|++..+...
T Consensus 173 ~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~--- 249 (413)
T PRK11573 173 RNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK--- 249 (413)
T ss_pred HHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhcc---
Confidence 3455555544 35699999998899999999999999999999999999999988778999999999998543210
Q ss_pred CCCCHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcC
Q psy744 151 SSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAE 230 (405)
Q Consensus 151 ~~~~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~ 230 (405)
..... ..+.+++ +++..|++
T Consensus 250 ~~~~~--------------------------------------------------------~~l~~~~----r~~~~Vpe 269 (413)
T PRK11573 250 KEFTK--------------------------------------------------------ENMLRAA----DEIYFVPE 269 (413)
T ss_pred CcCCH--------------------------------------------------------HHHHhhc----cCCeEeCC
Confidence 00000 0122222 67889999
Q ss_pred CCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhH-HHhhhccccCccCceEecCCCCHHHH
Q psy744 231 ETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL-KEANEHKTDWFEGVEKCLLDETLFTV 309 (405)
Q Consensus 231 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v-~~~~~~~~~~~~~~~~v~~~~~l~~a 309 (405)
+.++.++++.|.+++.+-..|+|+.|...|+||..|++..+.++..+..+... ..+.+ .....+.++...++.++
T Consensus 270 ~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~d~~~~~~i~~----~~~~~~~v~G~~~l~d~ 345 (413)
T PRK11573 270 GTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTP----QNDGSVIIDGTANVREI 345 (413)
T ss_pred CCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcccCcccccceEE----ecCCEEEEEeeeEHHHH
Confidence 99999999999999999999999999999999999999998876433221110 00111 12345667777888777
Q ss_pred HHHH
Q psy744 310 MERI 313 (405)
Q Consensus 310 ~~~m 313 (405)
.+.+
T Consensus 346 ~~~l 349 (413)
T PRK11573 346 NKAF 349 (413)
T ss_pred HHHh
Confidence 7765
No 153
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=5.2e-10 Score=91.66 Aligned_cols=119 Identities=21% Similarity=0.304 Sum_probs=92.2
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.++++..+||+|. ++++|++|..|+...+.......... ..
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~--~~----------------- 60 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDR--HQ----------------- 60 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccch--hh-----------------
Confidence 5678999999999999999999999999997 89999999999987654221110000 00
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
. ..+...++.++| ..++.++.+++++.++++.|.+.+.+.+||+|+
T Consensus 61 ----------------------~--------~~~~~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~- 106 (121)
T cd04633 61 ----------------------E--------RRIRNLPVSDIM---TRPVITIEPDTSVSDVASLMLENNIGGLPVVDD- 106 (121)
T ss_pred ----------------------h--------hhhhccCHHHHc---cCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-
Confidence 0 000122455555 257889999999999999999999999999997
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 107 ~~~~Gvi~~~dl~~ 120 (121)
T cd04633 107 GKLVGIVTRTDILR 120 (121)
T ss_pred CEEEEEEEHHHhhc
Confidence 99999999999874
No 154
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.16 E-value=5.1e-10 Score=90.95 Aligned_cols=107 Identities=17% Similarity=0.236 Sum_probs=84.9
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCC--CCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCC
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV--HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIH 173 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~--~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~ 173 (405)
+++++..+.++.+|++.|.++++..+||+|.. .++++|+++..|+..... .
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-----~---------------------- 55 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-----S---------------------- 55 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-----c----------------------
Confidence 46788999999999999999999999999972 289999999888762100 0
Q ss_pred EEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcC--CCCHHHHHHHHHhcCCCEEEE
Q psy744 174 RLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAE--ETSIIHALRKFLERRVSALPM 251 (405)
Q Consensus 174 ~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~--~~~l~~a~~~m~~~~~~~lpV 251 (405)
...++++|. ....++.. ++++.++++.|.+++...+||
T Consensus 56 -------------------------------------~~~v~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pV 95 (114)
T cd04602 56 -------------------------------------ETPLSEVMT---PREVLVVAPTGITLEEANEILRESKKGKLPI 95 (114)
T ss_pred -------------------------------------CCCHHHhcC---CCceEEECCCCCCHHHHHHHHHhcCCCceeE
Confidence 012334442 34455545 999999999999999999999
Q ss_pred ECCCCcEEEEEeHHHHHH
Q psy744 252 TDSEGHLVDIFAKFDVIN 269 (405)
Q Consensus 252 vd~~g~lvGivt~~Dl~~ 269 (405)
+|++|+++|+||.+|+++
T Consensus 96 v~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 96 VNDDGELVALVTRSDLKK 113 (114)
T ss_pred ECCCCeEEEEEEHHHhhc
Confidence 998899999999999864
No 155
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.16 E-value=6.9e-10 Score=90.21 Aligned_cols=109 Identities=25% Similarity=0.434 Sum_probs=91.5
Q ss_pred CCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCE
Q psy744 95 AKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHR 174 (405)
Q Consensus 95 ~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~ 174 (405)
..++++.++.++.+|+..|.++++..+||.+. .+++|++|..|+.+.+........
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~---------------------- 62 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLL---------------------- 62 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccc----------------------
Confidence 67899999999999999999999999999998 489999999999977654311000
Q ss_pred EEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHh-cCCCEEEEEC
Q psy744 175 LPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLE-RRVSALPMTD 253 (405)
Q Consensus 175 lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~-~~~~~lpVvd 253 (405)
++.++| ..++.++.++.++.++.+.|.+ ++++.+||++
T Consensus 63 --------------------------------------~v~~v~---~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~ 101 (117)
T COG0517 63 --------------------------------------PVKEVM---TKPVVTVDPDTPLEEALELMVERHKIRRLPVVD 101 (117)
T ss_pred --------------------------------------cHHHhc---cCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 344445 2478899999999999999999 7999999999
Q ss_pred CCC-cEEEEEeHHHHH
Q psy744 254 SEG-HLVDIFAKFDVI 268 (405)
Q Consensus 254 ~~g-~lvGivt~~Dl~ 268 (405)
+++ +++|++|..|++
T Consensus 102 ~~~~~lvGivt~~di~ 117 (117)
T COG0517 102 DDGGKLVGIITLSDIL 117 (117)
T ss_pred CCCCeEEEEEEHHHcC
Confidence 886 999999999973
No 156
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.16 E-value=1.1e-09 Score=88.13 Aligned_cols=109 Identities=22% Similarity=0.382 Sum_probs=89.5
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+.++++++.++.+|++.|.+.+.+.+||+|+ ++++|+++..|+.+...... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~--~~----------------------- 54 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGR--EA----------------------- 54 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCc--cc-----------------------
Confidence 4678999999999999999999999999998 89999999999985442110 00
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...+.+++ ..++.++.+++++.++++.|.+.+.+.+||+|++
T Consensus 55 -----------------------------------~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~ 96 (111)
T cd04612 55 -----------------------------------TVLVGDVM---TRDPVTASPDETLRDALKRMAERDIGRLPVVDDS 96 (111)
T ss_pred -----------------------------------ccCHHHhc---cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCC
Confidence 00222333 2678899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 97 ~~~~G~it~~di~~ 110 (111)
T cd04612 97 GRLVGIVSRSDLLR 110 (111)
T ss_pred CCEEEEEEHHHhhh
Confidence 99999999999875
No 157
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.15 E-value=1.6e-09 Score=86.61 Aligned_cols=111 Identities=28% Similarity=0.410 Sum_probs=90.6
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++.+.++.++++.|.+++...+||+|++ ++++|+++..|++..+.........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~---------------------- 58 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLV---------------------- 58 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccc----------------------
Confidence 46789999999999999999999999999987 8999999999999766432110000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
.+.+++ ..++..+.+++++.++++.|.+.+.+.+||+|++
T Consensus 59 -------------------------------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~ 98 (113)
T cd02205 59 -------------------------------------TVGDVM---TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDE 98 (113)
T ss_pred -------------------------------------cHHHHh---cCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCC
Confidence 022222 2567788899999999999999999999999998
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 99 ~~~~G~i~~~dl~~ 112 (113)
T cd02205 99 GRLVGIVTRSDILR 112 (113)
T ss_pred CcEEEEEEHHHhhc
Confidence 99999999999864
No 158
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.15 E-value=7.9e-10 Score=88.10 Aligned_cols=102 Identities=24% Similarity=0.317 Sum_probs=85.2
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.+++...+||+|+ ++++|+++..|+.... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~Giv~~~~l~~~~------~------------------------ 49 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRAH------P------------------------ 49 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEehHHhhccc------c------------------------
Confidence 4677899999999999999999999999984 8999999999987421 0
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
...+.++| ..++.++.+++++.++++.|.+++...+||+|+
T Consensus 50 -----------------------------------~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~- 90 (105)
T cd04599 50 -----------------------------------NRLVADAM---TREVVTISPEASLLEAKRLMEEKKIERLPVLRE- 90 (105)
T ss_pred -----------------------------------cCCHHHHc---cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-
Confidence 01223333 256789999999999999999999999999997
Q ss_pred CcEEEEEeHHHHH
Q psy744 256 GHLVDIFAKFDVI 268 (405)
Q Consensus 256 g~lvGivt~~Dl~ 268 (405)
|+++|++|..|++
T Consensus 91 ~~~~G~it~~~l~ 103 (105)
T cd04599 91 RKLVGIITKGTIA 103 (105)
T ss_pred CEEEEEEEHHHhc
Confidence 9999999999986
No 159
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.14 E-value=5e-10 Score=90.18 Aligned_cols=102 Identities=25% Similarity=0.331 Sum_probs=80.7
Q ss_pred EeCCccHHHHHHHHHHcC-----CceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCE
Q psy744 100 FDTQLLVKKAFFALVYNG-----IRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHR 174 (405)
Q Consensus 100 v~~~~~v~~A~~~m~~~~-----i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~ 174 (405)
++++.++.+|++.|.+++ +..+||+|++ ++++|++|..|+++. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~------~~----------------------- 51 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLA------DP----------------------- 51 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcC------CC-----------------------
Confidence 567788888988888777 4678888876 788888888877621 00
Q ss_pred EEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC
Q psy744 175 LPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS 254 (405)
Q Consensus 175 lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 254 (405)
..++.+++ ..++..+.+++++.++++.|.+.+...+||+|+
T Consensus 52 ------------------------------------~~~v~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~ 92 (109)
T cd04606 52 ------------------------------------DTPVSDIM---DTDVISVSADDDQEEVARLFEKYDLLALPVVDE 92 (109)
T ss_pred ------------------------------------cchHHHHh---CCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC
Confidence 11233443 256789999999999999999999999999998
Q ss_pred CCcEEEEEeHHHHHHH
Q psy744 255 EGHLVDIFAKFDVINL 270 (405)
Q Consensus 255 ~g~lvGivt~~Dl~~~ 270 (405)
+|+++|+++..|+++.
T Consensus 93 ~~~~~Gvit~~dll~~ 108 (109)
T cd04606 93 EGRLVGIITVDDVIDV 108 (109)
T ss_pred CCcEEEEEEhHHhhhh
Confidence 8999999999999864
No 160
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.13 E-value=4.6e-10 Score=111.54 Aligned_cols=121 Identities=21% Similarity=0.333 Sum_probs=104.8
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHh-----cCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHH
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLE-----RRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKE 285 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~-----~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~ 285 (405)
..+++.+| ..+++++.++.|+.+++..+++ .....++|+|.+++++|+++.++++..-. +..+.+
T Consensus 131 e~taG~~M---t~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~-------~~~i~~ 200 (451)
T COG2239 131 EDTAGRIM---TTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEP-------DELLKD 200 (451)
T ss_pred hhhhhccc---eeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCc-------HhHHHH
Confidence 45778888 5899999999999999999984 34577999999999999999999985422 445666
Q ss_pred hhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCC
Q psy744 286 ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKP 347 (405)
Q Consensus 286 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~ 347 (405)
+ |.+.+.++.++++.+++.+.|.+++.-.+||||++|+++|+||..|++..+..+-
T Consensus 201 i------m~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa 256 (451)
T COG2239 201 L------MEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEA 256 (451)
T ss_pred H------hcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHH
Confidence 5 5577899999999999999999999999999999999999999999999997543
No 161
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.13 E-value=5.1e-10 Score=89.94 Aligned_cols=106 Identities=22% Similarity=0.283 Sum_probs=85.1
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+.++++.+.++.+|++.|.+++...+||+|++ ++++|+++..|+.... ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~-----~~------------------------ 52 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFET-----DL------------------------ 52 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeecc-----cC------------------------
Confidence 56788999999999999999999999999987 8999999988875210 00
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcC-CCCHHHHHHHHHhcCCCEEEEECC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAE-ETSIIHALRKFLERRVSALPMTDS 254 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~-~~~l~~a~~~m~~~~~~~lpVvd~ 254 (405)
..++.++|. ..+..+.+ ++++.++++.|.+.+.+.+||+|+
T Consensus 53 -----------------------------------~~~v~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~ 94 (110)
T cd04601 53 -----------------------------------DKPVSEVMT---PENLLTTVEGTSLEEALELLHEHKIEKLPVVDD 94 (110)
T ss_pred -----------------------------------CCCHHHhcc---cCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC
Confidence 113334441 34455556 999999999999999999999998
Q ss_pred CCcEEEEEeHHHHHH
Q psy744 255 EGHLVDIFAKFDVIN 269 (405)
Q Consensus 255 ~g~lvGivt~~Dl~~ 269 (405)
+|+++|+|+.+|+++
T Consensus 95 ~~~~~Gvi~~~dil~ 109 (110)
T cd04601 95 EGKLKGLITVKDIEK 109 (110)
T ss_pred CCCEEEEEEhhhhhc
Confidence 899999999999874
No 162
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.12 E-value=1.6e-09 Score=86.84 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=85.8
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++.+.++.+|++.|.++++..+||+|. ++++|++|..|+.+.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~------------------------ 55 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKF------------------------ 55 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhcccccc------------------------
Confidence 5678999999999999999999999999997 79999999999997654211000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..++.+++ .+++.++++++++.++++.|.+ . ..+||++++
T Consensus 56 -----------------------------------~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~ 95 (110)
T cd04609 56 -----------------------------------SLPVREVM---GEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEG 95 (110)
T ss_pred -----------------------------------CcCHHHHh---cCCCceeCCCCcHHHHHHHHHh-C-CceeEEecC
Confidence 11233344 2567889999999999999988 3 347899888
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++.+|+++
T Consensus 96 ~~~~Gvvt~~di~~ 109 (110)
T cd04609 96 GKFVGIITRADLLK 109 (110)
T ss_pred CeEEEEEeHHHhhc
Confidence 99999999999874
No 163
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.12 E-value=1.7e-09 Score=86.49 Aligned_cols=105 Identities=22% Similarity=0.386 Sum_probs=87.0
Q ss_pred CCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCE
Q psy744 95 AKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHR 174 (405)
Q Consensus 95 ~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~ 174 (405)
+++++++.+.++.+|++.|.+++...+||+|+ ++++|+++..|++.. ..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~------~~----------------------- 50 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGK------DP----------------------- 50 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhcc------Cc-----------------------
Confidence 46788999999999999999888888999986 799999999998731 00
Q ss_pred EEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC
Q psy744 175 LPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS 254 (405)
Q Consensus 175 lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 254 (405)
...+.+++ ...+.++.+++++.++++.|.+++...+||+++
T Consensus 51 ------------------------------------~~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 91 (107)
T cd04610 51 ------------------------------------DETVEEIM---SKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE 91 (107)
T ss_pred ------------------------------------cccHHHhC---CCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC
Confidence 11233444 256788999999999999999999999999998
Q ss_pred CCcEEEEEeHHHHHH
Q psy744 255 EGHLVDIFAKFDVIN 269 (405)
Q Consensus 255 ~g~lvGivt~~Dl~~ 269 (405)
+|+++|+++..|+++
T Consensus 92 ~g~~~Gvi~~~di~~ 106 (107)
T cd04610 92 NNNLVGIITNTDVIR 106 (107)
T ss_pred CCeEEEEEEHHHhhc
Confidence 899999999999874
No 164
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.11 E-value=1.2e-09 Score=89.40 Aligned_cols=119 Identities=24% Similarity=0.335 Sum_probs=92.0
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++.+++.+.++.+|++.|.+++.+.+||+|.+ ++++|+++..|+.+.......... .....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~--~~~~~---------------- 62 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLS--EHELY---------------- 62 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccch--hhhhh----------------
Confidence 46788999999999999999999999999987 899999999999865432110000 00000
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
.....++.++|. ..+.++.+++++.++++.|.+.+...+||+++
T Consensus 63 --------------------------------~~~~~~v~~~~~---~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~- 106 (121)
T cd04584 63 --------------------------------LLLKMPVKEIMT---KDVITVHPLDTVEEAALLMREHRIGCLPVVED- 106 (121)
T ss_pred --------------------------------hhcCcCHHHHhh---CCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-
Confidence 001224555552 57789999999999999999999999999986
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 107 ~~~~Gvv~~~di~~ 120 (121)
T cd04584 107 GRLVGIITETDLLR 120 (121)
T ss_pred CEEEEEEEHHHhhc
Confidence 89999999999875
No 165
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.11 E-value=3.8e-09 Score=103.40 Aligned_cols=160 Identities=16% Similarity=0.245 Sum_probs=117.4
Q ss_pred CCCEEEEEeCCCCEEEEEeHHHHHH-----HHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcC
Q psy744 171 KIHRLPVIDEMGNVLYILTHKRILR-----FLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERR 245 (405)
Q Consensus 171 ~i~~lpVvd~~~~vvgilt~~dIl~-----~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 245 (405)
-.+++.++ .+|+++...++.+++. ++..++....... ......++...........++.+..++++.|...+
T Consensus 196 ~~drI~vl-~~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (363)
T TIGR01186 196 IGDRIVIM-KAGEIVQVGTPDEILRNPANEYVEEFIGKVDLSQ--VFDAERIAQRMNTGPITKTADKGPRSALQLMRDER 272 (363)
T ss_pred hCCEEEEE-eCCEEEeeCCHHHHHhCcccHHHHHHhhccchhc--ccchhhHhhhccccceeecCCCCHHHHHHHHHhcC
Confidence 34788888 5789999999999875 3333332211000 01222222111133345667888999999999999
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEc
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVD 325 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 325 (405)
...+.|+|+++++.|+++..++........ .+.+. +.....++.++++|.+++..|.+++.. +||+|
T Consensus 273 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 339 (363)
T TIGR01186 273 VDSLYVVDRQNKLVGVVDVESIKQARKKAQ------GLQDV------LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVD 339 (363)
T ss_pred CceEEEEcCCCCEEEEEeHHHHHHHhhcCC------chhhh------hccCCceECCCCcHHHHHHHHHhCCCC-EEEEC
Confidence 999999999999999999999876654321 23332 345677899999999999999999998 99999
Q ss_pred CCCcEEEEEeHHHHHHHHHhC
Q psy744 326 EDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 326 ~~g~lvGiIt~~DIl~~l~~~ 346 (405)
++|+++|+||..++++++...
T Consensus 340 ~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 340 EDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred CCCcEEEEEEHHHHHHHHHhh
Confidence 999999999999999999754
No 166
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=4.1e-09 Score=104.41 Aligned_cols=160 Identities=15% Similarity=0.161 Sum_probs=116.4
Q ss_pred CCCEEEEEeCCCCEEEEEeHHHHHH-----HHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcC
Q psy744 171 KIHRLPVIDEMGNVLYILTHKRILR-----FLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERR 245 (405)
Q Consensus 171 ~i~~lpVvd~~~~vvgilt~~dIl~-----~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 245 (405)
-.+++.+++ +|+++..-+..+++. ++..++.......+ .++.++|.......+...++.+..++++.|...+
T Consensus 231 ~~Dri~vL~-~G~i~~~g~~~~l~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (400)
T PRK10070 231 IGDRIAIMQ-NGEVVQVGTPDEILNNPANDYVRTFFRGVDISQV--FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDED 307 (400)
T ss_pred hCCEEEEEE-CCEEEecCCHHHHHhCcccHHHHHHHhccccccc--cchhhhhhcCcccccccCCCCCHHHHHHHHHhcC
Confidence 356777884 688888888888764 33333332221111 1444555211111223446778999999999999
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEc
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVD 325 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 325 (405)
.+.++|+|++++++|+++..++.+...... .+.+. +.....++.++++|.+++..|.++... +||||
T Consensus 308 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 374 (400)
T PRK10070 308 REYGYVIERGNKFVGAVSIDSLKTALTQQQ------GLDAA------LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVD 374 (400)
T ss_pred CceEEEEcCCCcEEEEEeHHHHHhhhhcCC------chhhh------hccCCceeCCCCCHHHHHHHHHhCCCc-EEEEC
Confidence 999999999999999999999987654321 23333 335677899999999999999998775 99999
Q ss_pred CCCcEEEEEeHHHHHHHHHhC
Q psy744 326 EDDHVLGVLSLSDILVYLVLK 346 (405)
Q Consensus 326 ~~g~lvGiIt~~DIl~~l~~~ 346 (405)
++|+++|+||..++++.+...
T Consensus 375 ~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 375 EDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred CCCcEEEEEEHHHHHHHHHhc
Confidence 999999999999999999743
No 167
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=99.10 E-value=1.8e-10 Score=101.93 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=112.2
Q ss_pred ccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHHhccccchhhhHHHhhhc
Q psy744 211 NKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-GHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEH 289 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~ 289 (405)
...++++|+.+ ...+++..+.++.+.+..+.+..++++||+.++ ..+.|++..+||++.+..... ...+.+
T Consensus 66 dl~vrDiMIPR-SQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~---~F~i~~---- 137 (293)
T COG4535 66 DLRVRDIMIPR-SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE---PFDIKE---- 137 (293)
T ss_pred HhhHhhhcccH-HHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc---cccHHH----
Confidence 55899999865 788999999999999999999999999999754 579999999999998765421 122344
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhCCCCCC
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDD 351 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~~~~~~~~ 351 (405)
+.+|.+.++++-.+...++-|...+.|...|+|+.|.+-|.||..||+..+++..+.+.
T Consensus 138 ---lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~ 196 (293)
T COG4535 138 ---LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEY 196 (293)
T ss_pred ---hcccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhccccccc
Confidence 44788999999999999999999999999999999999999999999999998776544
No 168
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.09 E-value=6.3e-10 Score=112.88 Aligned_cols=110 Identities=17% Similarity=0.222 Sum_probs=92.0
Q ss_pred EEEeCCccHHHHHHHHHHcCCceeeeEeCC--CCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 98 VVFDTQLLVKKAFFALVYNGIRAAPLWDSV--HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 98 v~v~~~~~v~~A~~~m~~~~i~~~PV~d~~--~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
.+++++.++.+|++.|.++++..+||+|+. .++++|++|..|+.... .
T Consensus 108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~----~-------------------------- 157 (502)
T PRK07107 108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR----M-------------------------- 157 (502)
T ss_pred CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc----c--------------------------
Confidence 689999999999999999999999999972 37999999999985110 0
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..+.+++++|... .+++++.+++++.+|+++|.++++..+||+|++
T Consensus 158 ---------------------------------~~~~~V~dIMt~~-~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~ 203 (502)
T PRK07107 158 ---------------------------------SLDTKVKDFMTPF-EKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN 203 (502)
T ss_pred ---------------------------------CCCCCHHHHhCCC-CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC
Confidence 0133577777311 378899999999999999999999999999988
Q ss_pred CcEEEEEeHHHHHHHH
Q psy744 256 GHLVDIFAKFDVINLA 271 (405)
Q Consensus 256 g~lvGivt~~Dl~~~~ 271 (405)
|+++|+||.+|+++..
T Consensus 204 g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 204 GNLVYLVFRKDYDSHK 219 (502)
T ss_pred CeEEEEEEhHHHHhcc
Confidence 9999999999998854
No 169
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.09 E-value=1.5e-09 Score=110.17 Aligned_cols=129 Identities=13% Similarity=0.165 Sum_probs=103.0
Q ss_pred hHHHHHHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCC
Q psy744 75 NQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSIT 154 (405)
Q Consensus 75 ~~~~~~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~ 154 (405)
.....++|+..++.|+| +++++++.++.++.+|++.|.++++..+||+|++ ++++|++|..|+.+.+......
T Consensus 325 ~~~~~~~l~~~~v~~im--~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~---- 397 (454)
T TIGR01137 325 VLTVFDVLKNATVKDLH--LPAPVTVHPTETVGDAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKAN---- 397 (454)
T ss_pred cccHHHHhccCCHHHhC--cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCC----
Confidence 43466779999999999 6689999999999999999999999999999987 8999999999998654321000
Q ss_pred HHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCH
Q psy744 155 MEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSI 234 (405)
Q Consensus 155 ~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l 234 (405)
...++.++| ..++.++.+++++
T Consensus 398 -------------------------------------------------------~~~~v~~im---~~~~~~v~~~~~l 419 (454)
T TIGR01137 398 -------------------------------------------------------PDDAVSKVM---SKKFIQIGEGEKL 419 (454)
T ss_pred -------------------------------------------------------cCCCHHHhc---CCCCeEECCcCcH
Confidence 012455555 2667899999999
Q ss_pred HHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q psy744 235 IHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLA 271 (405)
Q Consensus 235 ~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~ 271 (405)
.++++.|.+++ .+||+++|+++|+||..|+++.+
T Consensus 420 ~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 420 SDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred HHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 99999998754 34555579999999999998764
No 170
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.08 E-value=1.7e-09 Score=86.35 Aligned_cols=100 Identities=14% Similarity=0.211 Sum_probs=83.2
Q ss_pred EEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEEEE
Q psy744 98 VVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRLPV 177 (405)
Q Consensus 98 v~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~lpV 177 (405)
+++.++.++.+|++.|.+++...+||+|. ++++|+++..|+.+...
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~-------------------------------- 49 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY-------------------------------- 49 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc--------------------------------
Confidence 67889999999999999999999999996 89999999999873210
Q ss_pred EeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCc
Q psy744 178 IDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGH 257 (405)
Q Consensus 178 vd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~ 257 (405)
.++.++| .....++.++.++.++++.|.+++...+||+| +|+
T Consensus 50 ----------------------------------~~~~~~~---~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~ 91 (104)
T cd04594 50 ----------------------------------GDVVDYI---VRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGK 91 (104)
T ss_pred ----------------------------------cchhhhh---hcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCE
Confidence 0122233 24578899999999999999999999999998 589
Q ss_pred EEEEEeHHHHHH
Q psy744 258 LVDIFAKFDVIN 269 (405)
Q Consensus 258 lvGivt~~Dl~~ 269 (405)
++|++|..|++.
T Consensus 92 ~iGvit~~dl~~ 103 (104)
T cd04594 92 FKGIVTLDSILD 103 (104)
T ss_pred EEEEEEHHHhhc
Confidence 999999999874
No 171
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.07 E-value=3.4e-09 Score=90.07 Aligned_cols=141 Identities=23% Similarity=0.306 Sum_probs=95.9
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++++.++.+|++.|.++++.++||+|+ ++++|++|..|+++++.........-.... .. .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~-------------~~-~ 65 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSP-------------LE-L 65 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCc-------------ce-e
Confidence 5788999999999999999999999999997 799999999999877653221000000000 00 0
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
. ...+.-++...+....... ....++.++| ..++.++.+++++.++++.|.+.+.+.+||+++
T Consensus 66 --~--~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~---~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~- 128 (143)
T cd04634 66 --I--ELPLREFINWEETKRALTD---------AGKMKVRDIM---TKKVITISPDASIEDAAELMVRHKIKRLPVVED- 128 (143)
T ss_pred --e--eccchheeehHHHHHHHHH---------HhcCCHHHHc---CCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-
Confidence 0 0000011111111111110 0123456666 367899999999999999999999999999987
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|++.
T Consensus 129 ~~~~Gvvt~~dl~~ 142 (143)
T cd04634 129 GRLVGIVTRGDIIE 142 (143)
T ss_pred CEEEEEEEHHHhhc
Confidence 89999999999864
No 172
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.07 E-value=1.5e-09 Score=109.58 Aligned_cols=119 Identities=23% Similarity=0.339 Sum_probs=97.7
Q ss_pred ccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCC--CeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccH
Q psy744 86 KCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVH--QQYVGMLTITDFIKILQMYYTSSSITMEELEEHKL 163 (405)
Q Consensus 86 ~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~--~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i 163 (405)
+..+.| ..++++++++.++.+|++.|.++++..+||+|++. ++++|++|..|+.... .+
T Consensus 81 ~~~~~~--~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~-----~~------------ 141 (450)
T TIGR01302 81 RAENGI--ISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK-----DK------------ 141 (450)
T ss_pred cccCce--ecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh-----cC------------
Confidence 344555 55889999999999999999999999999999853 5899999999986210 00
Q ss_pred HHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHh
Q psy744 164 ETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 164 ~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~ 243 (405)
..++.++|. ..+++++++++++.++++.|.+
T Consensus 142 -----------------------------------------------~~~V~dvm~--~~~~~~V~~~~sl~eal~~m~~ 172 (450)
T TIGR01302 142 -----------------------------------------------GKPVSEVMT--REEVITVPEGIDLEEALKVLHE 172 (450)
T ss_pred -----------------------------------------------CCCHHHhhC--CCCCEEECCCCcHHHHHHHHHH
Confidence 124455552 1378999999999999999999
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHHHH
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~~~~ 272 (405)
++.+.+||+|++|+++|+||.+|+++...
T Consensus 173 ~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 173 HRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred cCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 99999999999999999999999998753
No 173
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.06 E-value=1.5e-09 Score=110.34 Aligned_cols=115 Identities=15% Similarity=0.195 Sum_probs=95.7
Q ss_pred CCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCC--CCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcC
Q psy744 94 SAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV--HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYK 171 (405)
Q Consensus 94 s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~--~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~ 171 (405)
..+++++.++.++.+|+++|.++++..+||+|+. .++++|++|..|+.... .
T Consensus 107 i~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~-----~--------------------- 160 (505)
T PLN02274 107 VSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN-----D--------------------- 160 (505)
T ss_pred cCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc-----c---------------------
Confidence 5678999999999999999999999999999973 27899999999986210 0
Q ss_pred CCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEE
Q psy744 172 IHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPM 251 (405)
Q Consensus 172 i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpV 251 (405)
...++.++|... .+++++.+++++.++++.|.+++...+||
T Consensus 161 --------------------------------------~~~~V~eIMt~~-~~lvtv~~~~sL~eAl~~m~~~~~~~LPV 201 (505)
T PLN02274 161 --------------------------------------RETKLSEVMTSD-DDLVTAPAGIDLEEAEAVLKDSKKGKLPL 201 (505)
T ss_pred --------------------------------------cCCcHHHHhccC-CCcEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 023566666310 23789999999999999999999999999
Q ss_pred ECCCCcEEEEEeHHHHHHHHHh
Q psy744 252 TDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 252 vd~~g~lvGivt~~Dl~~~~~~ 273 (405)
+|++++++|+||.+|+++....
T Consensus 202 VD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 202 VNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred EcCCCeEEEEEEHHHHHHHhhC
Confidence 9999999999999999988754
No 174
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.06 E-value=1.2e-09 Score=108.17 Aligned_cols=127 Identities=17% Similarity=0.265 Sum_probs=107.1
Q ss_pred HHhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHh
Q psy744 80 KFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELE 159 (405)
Q Consensus 80 ~~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~ 159 (405)
+|+ .+++.+++ ..+.+++++++++.+|.+.|.++|+.++.+++.+ +...||+|.+|+...+.....
T Consensus 145 e~~-~trv~~~~--~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~---------- 210 (610)
T COG2905 145 EFI-LTRVGEVK--TLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGR---------- 210 (610)
T ss_pred hHH-HHHHHHHh--cCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCC----------
Confidence 344 34555666 6788999999999999999999999999999887 899999999999966543210
Q ss_pred hccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHH
Q psy744 160 EHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALR 239 (405)
Q Consensus 160 ~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~ 239 (405)
-...+++++| +.+++++..++.+-+|.-
T Consensus 211 -------------------------------------------------~~~~~V~evm---T~p~~svd~~~~~feAml 238 (610)
T COG2905 211 -------------------------------------------------SKTQKVSEVM---TSPVISVDRGDFLFEAML 238 (610)
T ss_pred -------------------------------------------------Ccccchhhhh---ccCceeecCcchHHHHHH
Confidence 0144788888 589999999999999999
Q ss_pred HHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 240 KFLERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 240 ~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
.|.+++++++||++ +|+++|++|..||++....
T Consensus 239 ~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 239 MMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred HHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence 99999999999997 6999999999999988753
No 175
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.06 E-value=3.3e-09 Score=85.16 Aligned_cols=100 Identities=22% Similarity=0.260 Sum_probs=84.9
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCC--CCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCC
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV--HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIH 173 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~--~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~ 173 (405)
.+..++++.++.++.+.|.+++...+||+|+. .++++|+++..|+......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence 46788999999999999999999999999983 2889999999988744321
Q ss_pred EEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEEC
Q psy744 174 RLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTD 253 (405)
Q Consensus 174 ~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 253 (405)
+| ..++.++.+++++.++++.|.+++.+.+||++
T Consensus 56 -------------------------------------------~m---~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~ 89 (105)
T cd04591 56 -------------------------------------------YI---DPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD 89 (105)
T ss_pred -------------------------------------------hc---cCCCceECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence 12 25677899999999999999999999999995
Q ss_pred CCCcEEEEEeHHHHHH
Q psy744 254 SEGHLVDIFAKFDVIN 269 (405)
Q Consensus 254 ~~g~lvGivt~~Dl~~ 269 (405)
+|+++|+++.+|+++
T Consensus 90 -~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 90 -EGRLVGIITRKDLLK 104 (105)
T ss_pred -CCeEEEEEEhhhhhc
Confidence 789999999999875
No 176
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.05 E-value=1.1e-09 Score=103.27 Aligned_cols=114 Identities=20% Similarity=0.283 Sum_probs=94.6
Q ss_pred hcccccccCCCCC-eEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhcc
Q psy744 84 FHKCYDLIPTSAK-LVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHK 162 (405)
Q Consensus 84 ~~~~~d~~p~s~~-vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~ 162 (405)
..++.|+| ..+ +.++.++.++.+|++.|.+.++..+||+|++ ++++|++|..|+.+.+... .
T Consensus 154 ~~~v~~im--~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~--~------------ 216 (268)
T TIGR00393 154 LVKVKDLM--QTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGG--G------------ 216 (268)
T ss_pred hhhHHHHh--CCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcC--C------------
Confidence 35788888 445 8899999999999999999999999999987 8999999999998643210 0
Q ss_pred HHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHH
Q psy744 163 LETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFL 242 (405)
Q Consensus 163 i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~ 242 (405)
....+++++| .+++.++.+++++.+|++.|.
T Consensus 217 ----------------------------------------------~~~~~v~~im---~~~~~~v~~~~~l~~a~~~m~ 247 (268)
T TIGR00393 217 ----------------------------------------------SLKSEVRDFM---TLGPKTFKLDALLLEALEFLE 247 (268)
T ss_pred ----------------------------------------------cccCcHHHhC---CCCCeEECCCCcHHHHHHHHH
Confidence 0023566666 367889999999999999999
Q ss_pred hcCCCEEEEECCCCcEEEEEe
Q psy744 243 ERRVSALPMTDSEGHLVDIFA 263 (405)
Q Consensus 243 ~~~~~~lpVvd~~g~lvGivt 263 (405)
+.+...+||+|++|+++|+|+
T Consensus 248 ~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 248 RRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred HcCCcEEEEECCCCeEEEEEC
Confidence 999999999998899999985
No 177
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.01 E-value=2e-09 Score=100.60 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=83.7
Q ss_pred HHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcC
Q psy744 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERR 245 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 245 (405)
+-.+.|..|+||+|...+++|++|.+|++..- -+.++..+| .+++.++.+.+++..+.+.|.-.+
T Consensus 215 l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~------------~~t~ieKVM---tknp~tv~~~tsVAsvaq~MiwE~ 279 (432)
T COG4109 215 LVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKK------------PSTTIEKVM---TKNPITVRAKTSVASVAQMMIWEG 279 (432)
T ss_pred HHHHcCCCccceecccceEEEEEEehhhhcCC------------CCccHHHHh---ccCCeeecccchHHHHHHHHHhcc
Confidence 66789999999999999999999999998411 255788888 588999999999999999999999
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
+.-+||+|++.+++|+||++|+++.+..
T Consensus 280 iem~PVv~~n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 280 IEMLPVVDSNNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred ceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence 9999999999999999999999998764
No 178
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.00 E-value=1.4e-09 Score=77.05 Aligned_cols=52 Identities=31% Similarity=0.405 Sum_probs=49.9
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
|.+++.++++++++.++++.|.+++.+++||+|++|+++|+||.+||++++.
T Consensus 5 m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 5 MTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp SBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred CcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 6789999999999999999999999999999999999999999999999985
No 179
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.98 E-value=6.9e-09 Score=84.68 Aligned_cols=113 Identities=15% Similarity=0.174 Sum_probs=87.9
Q ss_pred CeEEEeCCccHHHHHHHHHHcC-CceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNG-IRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHR 174 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~-i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~ 174 (405)
++.++.+++++.+|++.|...+ +..+||+|+ ++++|+++..|+++.+...+. ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~------~~~---------------- 57 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYG------RAL---------------- 57 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhh------HHH----------------
Confidence 4567899999999999999887 899999998 899999999999865442100 000
Q ss_pred EEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCC---EEEE
Q psy744 175 LPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVS---ALPM 251 (405)
Q Consensus 175 lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~---~lpV 251 (405)
+...++.++| ..++.++.+++++.++++.|.+.+.. ..||
T Consensus 58 ----------------------------------~~~~~v~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v 100 (119)
T cd04598 58 ----------------------------------YGKKPVSEVM---DPDPLIVEADTPLEEVSRLATGRDSQNLYDGFI 100 (119)
T ss_pred ----------------------------------HcCCcHHHhc---CCCcEEecCCCCHHHHHHHHHcCCcccccccEE
Confidence 0022455666 36788999999999999999988753 4478
Q ss_pred ECCCCcEEEEEeHHHHHH
Q psy744 252 TDSEGHLVDIFAKFDVIN 269 (405)
Q Consensus 252 vd~~g~lvGivt~~Dl~~ 269 (405)
++++|+++|+|+..|+++
T Consensus 101 v~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 101 VTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred EeeCCeEEEEEEHHHHhc
Confidence 888899999999999874
No 180
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.97 E-value=6.8e-09 Score=105.52 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=96.2
Q ss_pred cccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCC--CCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHH
Q psy744 87 CYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV--HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLE 164 (405)
Q Consensus 87 ~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~--~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~ 164 (405)
..+.+ ..++++++++.++.+|+++|.++++..+||+|+. .++++|++|..|+... . .
T Consensus 98 ~e~g~--i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~-~----~-------------- 156 (495)
T PTZ00314 98 FENGF--IMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFV-K----D-------------- 156 (495)
T ss_pred ccccc--ccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhc-c----c--------------
Confidence 33455 4577899999999999999999999999999974 2789999999998611 0 0
Q ss_pred HHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhc
Q psy744 165 TNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLER 244 (405)
Q Consensus 165 ~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~ 244 (405)
...+++++|.. ..+++++.++.++.+++++|.++
T Consensus 157 ---------------------------------------------~~~~V~diMt~-~~~lvtv~~~~sl~eAl~lm~e~ 190 (495)
T PTZ00314 157 ---------------------------------------------KSTPVSEVMTP-REKLVVGNTPISLEEANEVLRES 190 (495)
T ss_pred ---------------------------------------------CCCCHHHhhCC-cCCceEeCCCCCHHHHHHHHHHc
Confidence 02256666620 02789999999999999999999
Q ss_pred CCCEEEEECCCCcEEEEEeHHHHHHHH
Q psy744 245 RVSALPMTDSEGHLVDIFAKFDVINLA 271 (405)
Q Consensus 245 ~~~~lpVvd~~g~lvGivt~~Dl~~~~ 271 (405)
+...+||+|++++++|+||.+|+++..
T Consensus 191 ~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 191 RKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred CCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 999999999999999999999999764
No 181
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.96 E-value=1.8e-08 Score=101.21 Aligned_cols=175 Identities=15% Similarity=0.161 Sum_probs=130.2
Q ss_pred hccchhHHHHHHh--hhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHh
Q psy744 70 EKDGGNQIFVKFF--KFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMY 147 (405)
Q Consensus 70 ~~~~~~~~~~~~l--~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~ 147 (405)
+.+.+.+.+++-| ..+++.++|..-.+++.++.+.++.++++.+.+++....||+++....++|++..+|++......
T Consensus 189 ~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 189 LEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred cCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence 4555677776655 46799999999899999999999999999999999999999996668999999999999665432
Q ss_pred hCCCCCCHHHHhhccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeE
Q psy744 148 YTSSSITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVET 227 (405)
Q Consensus 148 ~~~~~~~~~~l~~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~ 227 (405)
.. . ...... .+++..
T Consensus 269 ~~--~-----------------------------------------------------------~~~~~~----~~~~~~ 283 (429)
T COG1253 269 QS--D-----------------------------------------------------------LDLRVL----VRPPLF 283 (429)
T ss_pred cc--c-----------------------------------------------------------cchhhc----ccCCeE
Confidence 00 0 000000 147899
Q ss_pred EcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhh-HHHhhhccccCccCceEecCCCCH
Q psy744 228 VAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVT-LKEANEHKTDWFEGVEKCLLDETL 306 (405)
Q Consensus 228 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~-v~~~~~~~~~~~~~~~~v~~~~~l 306 (405)
++++.++.++++.|++.+.+-..|+|+.|.+.|+||..|++..+.....+..+.. ..+.... .... +.++...++
T Consensus 284 Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~---~~~~-~~v~G~~~l 359 (429)
T COG1253 284 VPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQR---DDDG-WLVDGRVPL 359 (429)
T ss_pred ecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEe---cCCc-EEEeccccH
Confidence 9999999999999999999999999999999999999999999987644322210 0111110 1123 556677777
Q ss_pred HHHHHHH
Q psy744 307 FTVMERI 313 (405)
Q Consensus 307 ~~a~~~m 313 (405)
.+..+.+
T Consensus 360 ~e~~~~l 366 (429)
T COG1253 360 EELEELL 366 (429)
T ss_pred HHHHHHh
Confidence 6666654
No 182
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.94 E-value=1.4e-08 Score=85.37 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=80.1
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
+++++.++.++.+|++.|.++++..+||+|++ ++++|++|..|+++++............+... .
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~----~---------- 66 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQ----T---------- 66 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcc----c----------
Confidence 57889999999999999999999999999987 89999999999998765321111100000000 0
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
+.. .+ .++.. ...+.+.| ..+++++.+++++.+|++.|.+++++.+||+|++
T Consensus 67 ----~~~----~v--~~i~~---------------~~~~~~~~---~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 67 ----NTC----LV--SSVCT---------------KGISYGGQ---ECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred ----ccc----cH--HHHhh---------------hhhhhccc---CCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 000 00 00000 00112222 2568899999999999999999999999999854
No 183
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.93 E-value=1.6e-08 Score=80.82 Aligned_cols=104 Identities=19% Similarity=0.295 Sum_probs=83.8
Q ss_pred CeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEE
Q psy744 96 KLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRL 175 (405)
Q Consensus 96 ~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~l 175 (405)
++++++.+.++.+|++.|.++++..+||++++ ++++|+++..+++... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~------~~----------------------- 51 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNP------EE----------------------- 51 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhcc------cc-----------------------
Confidence 46788899999999999999888899999887 8899999988887310 00
Q ss_pred EEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC
Q psy744 176 PVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE 255 (405)
Q Consensus 176 pVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 255 (405)
..+.+++ ..++.++.+++++.++++.|.+.+...+||+|+
T Consensus 52 ------------------------------------~~~~~~~---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~- 91 (106)
T cd04638 52 ------------------------------------EQLALLM---TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD- 91 (106)
T ss_pred ------------------------------------chHHHHh---cCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-
Confidence 0122222 256788899999999999999999999999984
Q ss_pred CcEEEEEeHHHHHH
Q psy744 256 GHLVDIFAKFDVIN 269 (405)
Q Consensus 256 g~lvGivt~~Dl~~ 269 (405)
|+++|+++..|+++
T Consensus 92 ~~~~G~it~~d~~~ 105 (106)
T cd04638 92 GKLVGIVTVADIVR 105 (106)
T ss_pred CEEEEEEEHHHhhc
Confidence 79999999999864
No 184
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.82 E-value=1.6e-08 Score=71.47 Aligned_cols=55 Identities=27% Similarity=0.404 Sum_probs=50.4
Q ss_pred ccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHH
Q psy744 215 RDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 215 ~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~ 272 (405)
+++| .++++++.+++++.++++.|.+++++++||+|++|+++|++|.+|+++++.
T Consensus 2 ~~~m---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIM---TPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHS---BSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred eECC---cCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 4566 369999999999999999999999999999999999999999999998764
No 185
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.81 E-value=6.4e-08 Score=91.65 Aligned_cols=130 Identities=16% Similarity=0.221 Sum_probs=109.9
Q ss_pred hhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhcc
Q psy744 83 KFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHK 162 (405)
Q Consensus 83 ~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~ 162 (405)
...++.|+|-.-..+..++.+.+.++..+.+...-...+|+|.++..+++||+..+|+++++.+...
T Consensus 198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~------------- 264 (423)
T COG4536 198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE------------- 264 (423)
T ss_pred ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-------------
Confidence 3559999998889999999999999999999999999999998887889999999999988765311
Q ss_pred HHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHH
Q psy744 163 LETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFL 242 (405)
Q Consensus 163 i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~ 242 (405)
.+..|+.+. ..++..+++.+++.+-+..|.
T Consensus 265 -------------------------~~k~d~~~~-------------------------a~epyFVPe~Tpl~~QL~~F~ 294 (423)
T COG4536 265 -------------------------FTKEDILRA-------------------------ADEPYFVPEGTPLSDQLVAFQ 294 (423)
T ss_pred -------------------------ccHhHHHHH-------------------------hcCCeecCCCCcHHHHHHHHH
Confidence 011122221 157889999999999999999
Q ss_pred hcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcc
Q psy744 243 ERRVSALPMTDSEGHLVDIFAKFDVINLAAEKT 275 (405)
Q Consensus 243 ~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~ 275 (405)
+++-+-..|||+-|.+.|+||.+|++..+....
T Consensus 295 ~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdf 327 (423)
T COG4536 295 RNKKHIALVVDEYGDIQGLVTLEDILEEIVGDF 327 (423)
T ss_pred HhcceEEEEEeccCcEEeeeeHHHHHHHHhccc
Confidence 999888899999999999999999999887664
No 186
>KOG2550|consensus
Probab=98.79 E-value=9e-09 Score=97.98 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=98.1
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhc
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS---EGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEH 289 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~ 289 (405)
.++.+..+-..+++.+.|+.++.++++....+++..+||.+. .+|++|+||.+|+-.. ++ -...+.++
T Consensus 106 ~vK~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~--~~----~~~~~~~v--- 176 (503)
T KOG2550|consen 106 RVKNYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL--ED----NSLLVSDV--- 176 (503)
T ss_pred HHHHhhcccccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh--hc----ccchhhhh---
Confidence 344444333478899999999999999999999999999964 3689999999998765 21 13345554
Q ss_pred cccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 290 KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 290 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
|+...++...+.+|.++-+++.+++...|||||++|+++.+|+++||.+.-
T Consensus 177 ---mt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 177 ---MTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred ---cccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence 556668889999999999999999999999999999999999999998864
No 187
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.73 E-value=5.5e-08 Score=90.64 Aligned_cols=147 Identities=19% Similarity=0.266 Sum_probs=113.5
Q ss_pred CEEEEEeCCCCEEEEEeHHHHHH-----HHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCC
Q psy744 173 HRLPVIDEMGNVLYILTHKRILR-----FLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVS 247 (405)
Q Consensus 173 ~~lpVvd~~~~vvgilt~~dIl~-----~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~ 247 (405)
+||.++ ++|+++++-|+.+|+. |+..|+.+......+ +..++|.. ......-.+...-..++..+......
T Consensus 233 ~rIaim-kdG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~Vl--tA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~ 308 (386)
T COG4175 233 DRIAIM-KDGEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVL--TAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGRE 308 (386)
T ss_pred ceEEEe-cCCeEEEeCCHHHHHcCccHHHHHHHHhcCChhhee--eHHHhhcc-cccccccccccccchhhhhhhhccch
Confidence 578888 7999999999999995 777777765544433 56777742 12222223333445678888888877
Q ss_pred EEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCC
Q psy744 248 ALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDED 327 (405)
Q Consensus 248 ~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 327 (405)
.+.+++.+++.+|+++..++..+. +...+.++.+++++.+.+..+.+... .++|+|++
T Consensus 309 ~~~~~~~~~~~~g~v~~~~~~~~~---------------------~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~ 366 (386)
T COG4175 309 YGYAVDRGNKFVGVVSIDSLVKAA---------------------LIDDVLTVDADTPLSEILARIRQAPC-PVAVVDED 366 (386)
T ss_pred hhHHHhccCceeeEEeccchhccc---------------------ccccccccCccchHHHHHHHHhcCCC-ceeEEcCC
Confidence 788888888899999999887651 23567789999999999999988887 78999999
Q ss_pred CcEEEEEeHHHHHHHHHh
Q psy744 328 DHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 328 g~lvGiIt~~DIl~~l~~ 345 (405)
|+++|+|+...++.++..
T Consensus 367 ~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 367 GRYVGIISRGELLEALAR 384 (386)
T ss_pred CcEEEEecHHHHHHHHhc
Confidence 999999999999999974
No 188
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.61 E-value=3.9e-07 Score=90.81 Aligned_cols=118 Identities=19% Similarity=0.312 Sum_probs=92.3
Q ss_pred ccccccCCCCCeEEEeCCccHHHHHHHHHHcC-----CceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhh
Q psy744 86 KCYDLIPTSAKLVVFDTQLLVKKAFFALVYNG-----IRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEE 160 (405)
Q Consensus 86 ~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~-----i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~ 160 (405)
++.-+| ..+.+++..+.|+.+|+..+++.+ +..+-|+|.+ +++.|+++.++++
T Consensus 133 taG~~M--t~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~Ll------------------- 190 (451)
T COG2239 133 TAGRIM--TTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDLL------------------- 190 (451)
T ss_pred hhhccc--eeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHHh-------------------
Confidence 555577 678999999999999999999653 3455555555 5566666655555
Q ss_pred ccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHH
Q psy744 161 HKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRK 240 (405)
Q Consensus 161 ~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~ 240 (405)
. .--+..++++|. +.++++.+++..+++.+.
T Consensus 191 ----------------------------------~------------a~~~~~i~~im~---~~~~~V~~~~dqeevA~~ 221 (451)
T COG2239 191 ----------------------------------T------------AEPDELLKDLME---DDVVSVLADDDQEEVARL 221 (451)
T ss_pred ----------------------------------c------------CCcHhHHHHHhc---ccceeecccCCHHHHHHH
Confidence 1 001336777773 668999999999999999
Q ss_pred HHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 241 FLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 241 m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
+.+++.-.+||||++++++|++|..|++..+.+.
T Consensus 222 ~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 222 FEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred HHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence 9999999999999999999999999999887654
No 189
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.45 E-value=2.1e-06 Score=76.49 Aligned_cols=161 Identities=10% Similarity=0.123 Sum_probs=123.3
Q ss_pred hcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccH
Q psy744 84 FHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKL 163 (405)
Q Consensus 84 ~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i 163 (405)
...+.|+|-+-++.++++.+.++.+.+..+.+......||+.+++..+.||+-..|++.++.....
T Consensus 66 dl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~-------------- 131 (293)
T COG4535 66 DLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE-------------- 131 (293)
T ss_pred HhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc--------------
Confidence 557889998888999999999999999999999999999998887889999999999876542100
Q ss_pred HHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHh
Q psy744 164 ETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 164 ~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~ 243 (405)
...++++. ++.+.|++...+...++.++.
T Consensus 132 -----------------------------------------------~F~i~~lL----RPav~VPESKrvd~lLkeFR~ 160 (293)
T COG4535 132 -----------------------------------------------PFDIKELL----RPAVVVPESKRVDRLLKEFRS 160 (293)
T ss_pred -----------------------------------------------cccHHHhc----ccceecccchhHHHHHHHHHh
Confidence 00122222 788899999999999999999
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhh-HHHhhhccccCccCceEecCCCCHHHHHHHH
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVT-LKEANEHKTDWFEGVEKCLLDETLFTVMERI 313 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~-v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m 313 (405)
++.+-..|+|+-|.+-|.||..|++..+.....+..+.. -.++.. ..+.-+.+..-+++.+--+.|
T Consensus 161 ~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~----ls~~~~~VrALT~IedFNe~F 227 (293)
T COG4535 161 QRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQ----LSRHTWRVRALTEIEDFNEAF 227 (293)
T ss_pred hcCceEEEEeccCCeeeeEEHHHHHHHHhcccccccchhhhhhhHh----hcCCceEEEecccHHHHHHHh
Confidence 999999999999999999999999999876543322211 111211 335566777777777666654
No 190
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=5.4e-06 Score=82.34 Aligned_cols=107 Identities=14% Similarity=0.145 Sum_probs=81.1
Q ss_pred EeCCccHHHHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCCEEEEEe
Q psy744 100 FDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRLPVID 179 (405)
Q Consensus 100 v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~~lpVvd 179 (405)
..++.+...|+..|..++..++.|+|.+ ++++|+++..++.......
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-------------------------------- 336 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQQ-------------------------------- 336 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhcC--------------------------------
Confidence 3455677888888888888888888877 7888888877776433210
Q ss_pred CCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEE
Q psy744 180 EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLV 259 (405)
Q Consensus 180 ~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lv 259 (405)
..+.+.+ .....++.+++++.+++..+.+.... +||+|++|+++
T Consensus 337 --------------------------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~ 380 (400)
T PRK10070 337 --------------------------------QGLDAAL---IDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYV 380 (400)
T ss_pred --------------------------------Cchhhhh---ccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEE
Confidence 0122222 14567899999999999999987766 99999999999
Q ss_pred EEEeHHHHHHHHHhcc
Q psy744 260 DIFAKFDVINLAAEKT 275 (405)
Q Consensus 260 Givt~~Dl~~~~~~~~ 275 (405)
|+|+..++++.+....
T Consensus 381 g~~~~~~~~~~~~~~~ 396 (400)
T PRK10070 381 GIISKGMLLRALDREG 396 (400)
T ss_pred EEEEHHHHHHHHHhcC
Confidence 9999999999987653
No 191
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.40 E-value=1.9e-07 Score=97.10 Aligned_cols=165 Identities=12% Similarity=0.091 Sum_probs=119.8
Q ss_pred HHHhcCCCEEEEEeC------------CCCEEEEEeHHHHHHHHHHhhCCCCCcccccccccccccccc-CCeeEEcCCC
Q psy744 166 NLIDYKIHRLPVIDE------------MGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY-ENVETVAEET 232 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~------------~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~v~~~~ 232 (405)
.+++.++..+.|++. ...+.++.|+.|.......... ..+++++| . ++++++++++
T Consensus 196 ~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ii~t~~dt~~t~~~l~~--------~~~V~~iM---~~~~~~~~~~~~ 264 (546)
T PRK14869 196 AAIEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYDTFTTARLINQ--------SIPVSYIM---TTEDLVTFSKDD 264 (546)
T ss_pred HHHHcCCCEEEECCCCCCCHHHHHHHHhCCCeEEEecccHHHHHHHhhc--------CCCHHHhc---cCCCcEEECCCC
Confidence 578889999988862 3468999999998876654322 45789998 4 6899999999
Q ss_pred CHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcc----ccchhh--------hHHHhhh---ccccCccCc
Q psy744 233 SIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKT----YTNLDV--------TLKEANE---HKTDWFEGV 297 (405)
Q Consensus 233 ~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~----~~~l~~--------~v~~~~~---~~~~~~~~~ 297 (405)
++.++.+.|.+++++.+||+|++|+++|++|..|+++...... ...... .+.++.. ..+.+...+
T Consensus 265 ~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~iiDHH~~~~~~~~~p 344 (546)
T PRK14869 265 YLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEIIDHHRLGDIQTSNP 344 (546)
T ss_pred cHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccccccccchhhceEEEEecCCccCCCCCCCC
Confidence 9999999999999999999999999999999999998654310 000000 0001111 123344454
Q ss_pred eEe---cCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 298 EKC---LLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 298 ~~v---~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
+.+ +...+..-+.+.|.+.++...|++. ...+.||+|-++.+++
T Consensus 345 i~~~~~~~gst~tiv~~~~~~~~i~~~~~ia-~~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 345 IFFRNEPVGSTSTIVARMYRENGIEPSPEIA-GLLLAAILSDTLLFKS 391 (546)
T ss_pred cEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHHhcCccC
Confidence 444 4466777888999999998888876 5578888888877763
No 192
>KOG0474|consensus
Probab=98.38 E-value=6e-07 Score=89.96 Aligned_cols=135 Identities=14% Similarity=0.229 Sum_probs=107.4
Q ss_pred ccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCC-----CcEEEEEeHHHHHHHHHhcccc----
Q psy744 207 PSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSE-----GHLVDIFAKFDVINLAAEKTYT---- 277 (405)
Q Consensus 207 ~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~lvGivt~~Dl~~~~~~~~~~---- 277 (405)
+.+.+.+++++| ..+++++..-+.+..+.+.+....++++||+|+. +++.|+|-++.++..+....+.
T Consensus 577 ~~mr~L~a~ev~---~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~ 653 (762)
T KOG0474|consen 577 PYMRNLTAGEVM---SKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESR 653 (762)
T ss_pred hHhhhhhHhhhc---cCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCc
Confidence 334455788888 4789999999999999999999999999999952 5789999999998877654221
Q ss_pred -chhh----------------hHHH----------hhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcE
Q psy744 278 -NLDV----------------TLKE----------ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHV 330 (405)
Q Consensus 278 -~l~~----------------~v~~----------~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l 330 (405)
..+. ++++ .++....|...++++.+++++..++.+|.+-+.+++.||+..+++
T Consensus 654 ~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~ 733 (762)
T KOG0474|consen 654 STFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRV 733 (762)
T ss_pred cccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCce
Confidence 0011 1111 123345677889999999999999999999999999999988999
Q ss_pred EEEEeHHHHHHHHH
Q psy744 331 LGVLSLSDILVYLV 344 (405)
Q Consensus 331 vGiIt~~DIl~~l~ 344 (405)
+|++|++|+.++=.
T Consensus 734 ~gilTR~D~~~~~~ 747 (762)
T KOG0474|consen 734 VGILTRKDLARYRI 747 (762)
T ss_pred eEEEehhhhhhHHH
Confidence 99999999996653
No 193
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.24 E-value=1.1e-05 Score=79.09 Aligned_cols=94 Identities=19% Similarity=0.309 Sum_probs=79.6
Q ss_pred HHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcC
Q psy744 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERR 245 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 245 (405)
.|...+...+.|+|+++++.|.++.+++..+... ...+.+.+ .....++.+++++.+++..|.+.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 332 (363)
T TIGR01186 267 LMRDERVDSLYVVDRQNKLVGVVDVESIKQARKK-----------AQGLQDVL---IDDIYTVDAGTLLRETVRKVLKAG 332 (363)
T ss_pred HHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhc-----------CCchhhhh---ccCCceECCCCcHHHHHHHHHhCC
Confidence 6778889999999999999999999998876542 11344444 256788999999999999999999
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
.. +||+|++|+++|+|+..+++..+...
T Consensus 333 ~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 333 IK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred CC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 88 99999999999999999999988654
No 194
>KOG0474|consensus
Probab=98.20 E-value=7.9e-06 Score=82.18 Aligned_cols=161 Identities=16% Similarity=0.204 Sum_probs=109.8
Q ss_pred HhhhcccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCC----CeeeeEEeHHHHHHHHHHhhCC-CCCCH
Q psy744 81 FFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVH----QQYVGMLTITDFIKILQMYYTS-SSITM 155 (405)
Q Consensus 81 ~l~~~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~----~~~~GilT~~Dil~~l~~~~~~-~~~~~ 155 (405)
+|++.++.|+| +++|+++...+.+...++.|...+..+.||+|+.. +++.|++-.+.++..+.+.... ...+.
T Consensus 578 ~mr~L~a~ev~--~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~ 655 (762)
T KOG0474|consen 578 YMRNLTAGEVM--SKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRST 655 (762)
T ss_pred HhhhhhHhhhc--cCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccc
Confidence 56788999999 78999999999999999999999999999998743 4788999999998877653211 10000
Q ss_pred HHHh---hccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCC
Q psy744 156 EELE---EHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEET 232 (405)
Q Consensus 156 ~~l~---~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~ 232 (405)
.++. ..+... +.+ +-|=+++ + -+|..++- +...+..+| .+.++++.+++
T Consensus 656 ~~~~~~~~~~~~d-~a~----r~~~i~d----v-~lt~~e~~---------------~yvDl~p~~---n~sPytV~~~m 707 (762)
T KOG0474|consen 656 FDLPVRRKFTFRD-FAK----REPSIED----V-HLTSEEME---------------MYVDLHPFM---NPSPYTVPETM 707 (762)
T ss_pred cCcchhhcCCHHH-hhh----cCCchhh----h-hcchHhHh---------------hcccccccc---CCCCcccCccc
Confidence 0000 000000 000 0000000 0 00111111 111344444 37789999999
Q ss_pred CHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q psy744 233 SIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLA 271 (405)
Q Consensus 233 ~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~ 271 (405)
++..++.++++-+.+++.||++.++++|++|++|+...-
T Consensus 708 Sl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 708 SLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR 746 (762)
T ss_pred chHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence 999999999999999999999989999999999998544
No 195
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.12 E-value=3.3e-05 Score=76.21 Aligned_cols=147 Identities=14% Similarity=0.142 Sum_probs=98.7
Q ss_pred cCCCEEEEEeCCCCEEEEEeHHHHHH-----HHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhc
Q psy744 170 YKIHRLPVIDEMGNVLYILTHKRILR-----FLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLER 244 (405)
Q Consensus 170 ~~i~~lpVvd~~~~vvgilt~~dIl~-----~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~ 244 (405)
.-.+++.++ .+|+++...+..+++. ++..+......... .+..++| ++...+...... .+++. .
T Consensus 230 ~l~DrI~vl-~~G~iv~~g~~~ei~~~p~~~~~~~~~~~~~~~~~--l~a~~~m----~~~~~~~~~~~~-~~~~~---~ 298 (382)
T TIGR03415 230 KIGNRIAIM-EGGRIIQHGTPEEIVLNPANDYVADFVAHTNPLNV--LTARSLM----RPLTDLEHVDGG-WCVSD---R 298 (382)
T ss_pred HhCCEEEEE-ECCEEEEecCHHHHhhCcchHHHHHHhcccCcccc--eeHHHHh----cccccccccCcc-hhhhh---c
Confidence 345788888 5789999999988863 34444443332222 2566677 232233222222 44444 7
Q ss_pred CCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEE
Q psy744 245 RVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVV 324 (405)
Q Consensus 245 ~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 324 (405)
+.+.++|+|. |+++..+...+..... ...+.+ +.....++++++++.+++..+.+++. .++|+
T Consensus 299 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~ 361 (382)
T TIGR03415 299 RDTWLFTIDK-----QVRRRDAKLPVQAWAA----EQEVES-------LEAAPTVINPDTLMRDVLAARHRTGG-AILLV 361 (382)
T ss_pred ccceeEeecc-----ceecccchHhHhhccc----ccchhh-------hcccCcccCCCCcHHHHHHHHhcCCC-CeEEe
Confidence 8888999985 8888888665444211 111222 22467789999999999999998876 68899
Q ss_pred cCCCcEEEEEeHHHHHHHHHh
Q psy744 325 DEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 325 d~~g~lvGiIt~~DIl~~l~~ 345 (405)
|+ |+++|+|+..+++.++..
T Consensus 362 ~~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 362 EN-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred eC-CeEEEEEeHHHHHHHHhc
Confidence 85 999999999999999863
No 196
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.06 E-value=9.7e-06 Score=65.85 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=45.3
Q ss_pred CccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHH
Q psy744 293 WFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILV 341 (405)
Q Consensus 293 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~ 341 (405)
|.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..||.+
T Consensus 64 m~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 64 INRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred cCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 5578889999999999999999999999999998899999999999864
No 197
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.02 E-value=2e-05 Score=52.37 Aligned_cols=47 Identities=32% Similarity=0.449 Sum_probs=43.1
Q ss_pred ceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 297 VEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 297 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
+.++.+++++.++++.|.+.+.+.+||++++++++|+++..++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 46789999999999999999999999999889999999999998765
No 198
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.02 E-value=2.1e-05 Score=63.88 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=49.6
Q ss_pred cccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q psy744 212 KTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVIN 269 (405)
Q Consensus 212 ~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~ 269 (405)
.++.++|. +++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+.+
T Consensus 58 ~~v~dim~---~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVIN---RKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcC---CCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 46888884 67889999999999999999999999999999899999999999864
No 199
>KOG2550|consensus
Probab=97.90 E-value=2.6e-05 Score=74.86 Aligned_cols=110 Identities=19% Similarity=0.239 Sum_probs=86.8
Q ss_pred CCeEEEeCCccHHHHHHHHHHcCCceeeeEeCC--CCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCC
Q psy744 95 AKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV--HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKI 172 (405)
Q Consensus 95 ~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~--~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i 172 (405)
.+.+++.++.++-++++.-..+++..+|+.+.. ..+++|++|.+|+--. ..
T Consensus 116 ~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~-------------------------- 168 (503)
T KOG2550|consen 116 NNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-ED-------------------------- 168 (503)
T ss_pred cCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hc--------------------------
Confidence 456888899999999999999999999998642 2567777777776511 00
Q ss_pred CEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEE
Q psy744 173 HRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMT 252 (405)
Q Consensus 173 ~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 252 (405)
....+.++|. .+.++.+.+.++.++-+++.+.+...+|||
T Consensus 169 -------------------------------------~~~~~~~vmt---~~~~~~~~gi~l~~~neiL~~~kkGkl~iv 208 (503)
T KOG2550|consen 169 -------------------------------------NSLLVSDVMT---KNPVTGAQGITLKEANEILKKIKKGKLPVV 208 (503)
T ss_pred -------------------------------------ccchhhhhcc---cccccccccccHHHHHHHHHhhhcCCccee
Confidence 0235666773 555889999999999999999999999999
Q ss_pred CCCCcEEEEEeHHHHHHHH
Q psy744 253 DSEGHLVDIFAKFDVINLA 271 (405)
Q Consensus 253 d~~g~lvGivt~~Dl~~~~ 271 (405)
|++|.++.++++.||.+..
T Consensus 209 ~~~gelva~~~rtDl~k~~ 227 (503)
T KOG2550|consen 209 DDKGELVAMLSRTDLMKNR 227 (503)
T ss_pred ccCCceeeeeehhhhhhhc
Confidence 9999999999999997653
No 200
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.77 E-value=9.3e-05 Score=48.99 Aligned_cols=47 Identities=36% Similarity=0.540 Sum_probs=42.5
Q ss_pred eeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q psy744 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLA 271 (405)
Q Consensus 225 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~ 271 (405)
+.++.+++++.++++.|.+.+.+.+||++++++++|+++..++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 46788999999999999999999999999889999999999997653
No 201
>KOG0475|consensus
Probab=97.51 E-value=0.00057 Score=69.27 Aligned_cols=118 Identities=10% Similarity=0.100 Sum_probs=88.3
Q ss_pred eeEEcCC-CCHHHHHHHHHhcCCCEEEEEC--CCCcEEEEEeHHHHHHHHHhccc-cch--------hhh-------HHH
Q psy744 225 VETVAEE-TSIIHALRKFLERRVSALPMTD--SEGHLVDIFAKFDVINLAAEKTY-TNL--------DVT-------LKE 285 (405)
Q Consensus 225 ~~~v~~~-~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGivt~~Dl~~~~~~~~~-~~l--------~~~-------v~~ 285 (405)
..++..+ .++.+....|.+..++.+||+- +..+++|++.++|+.-.+..... ... ..+ ...
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~ 637 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPS 637 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCC
Confidence 4555555 8999999999999999999883 34789999999999877653210 000 000 011
Q ss_pred hhhccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 286 ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 286 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
-++.+..|...+.++...++.+.+++++.+-+++.+.|.. +|++.|+||.+|+++..
T Consensus 638 ~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 638 RLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRHT 694 (696)
T ss_pred CcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHhh
Confidence 1233455667788999999999999999999998887765 89999999999999864
No 202
>KOG0475|consensus
Probab=96.92 E-value=0.0074 Score=61.46 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=89.9
Q ss_pred CeEEEeCC-ccHHHHHHHHHHcCCceeeeE-eCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHhhccHHHHHHhcCCC
Q psy744 96 KLVVFDTQ-LLVKKAFFALVYNGIRAAPLW-DSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIH 173 (405)
Q Consensus 96 ~vv~v~~~-~~v~~A~~~m~~~~i~~~PV~-d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~~~~i~~~l~~~~i~ 173 (405)
.++++..+ .++.+...+|.+......||+ ++++++++|+++.+|+.-.+............ +
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~--------~-------- 620 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVT--------T-------- 620 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhcccccccee--------c--------
Confidence 45666655 899999999999999988886 55668899999999998666532111110000 0
Q ss_pred EEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEEC
Q psy744 174 RLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTD 253 (405)
Q Consensus 174 ~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 253 (405)
++ +...+.+. .....--...+++++ .-.+.++...++.+-+++++.+-+...+.|.
T Consensus 621 ---------~~-~f~~~~~~----------~~~~~~~~~~lk~il---~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~- 676 (696)
T KOG0475|consen 621 ---------SI-YFNDPSPS----------AVAGIPSRLDLKDIL---DMTPFTVTDLTPMETVVDLFRKLGLRQILVT- 676 (696)
T ss_pred ---------cc-ccCCCCcc----------ccCCCCCCcCceeec---cCCcccccccCcHHHHHHHHHhhCceEEEEc-
Confidence 00 00000000 000000012445555 2567889999999999999999999888775
Q ss_pred CCCcEEEEEeHHHHHHHH
Q psy744 254 SEGHLVDIFAKFDVINLA 271 (405)
Q Consensus 254 ~~g~lvGivt~~Dl~~~~ 271 (405)
++|++.|+||.+|+++..
T Consensus 677 ~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 677 KNGILLGIITKKDCLRHT 694 (696)
T ss_pred cCCeeEeeeehHHHHHhh
Confidence 579999999999998764
No 203
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.53 E-value=0.016 Score=53.25 Aligned_cols=97 Identities=23% Similarity=0.314 Sum_probs=64.7
Q ss_pred CCEEEEEeCCCCEEEEEeHHHHHH-----HHHHhhCCCCC--cccccccccccccccc-CCeeEEcCCCCHHHHHHHHHh
Q psy744 172 IHRLPVIDEMGNVLYILTHKRILR-----FLFLYINDLPK--PSFLNKTLRDLKIGTY-ENVETVAEETSIIHALRKFLE 243 (405)
Q Consensus 172 i~~lpVvd~~~~vvgilt~~dIl~-----~l~~~~~~~~~--~~~~~~~v~~i~~~~~-~~~~~v~~~~~l~~a~~~m~~ 243 (405)
..++.|++ .|+++++-++.+|++ |+..+++.-.. ..+....+.+.+.... -.--.+.....-.+++..+..
T Consensus 203 adri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~ 281 (309)
T COG1125 203 ADRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLA 281 (309)
T ss_pred hceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHh
Confidence 46889995 899999999999986 66666553211 1111223333332100 011123334445568888888
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHH
Q psy744 244 RRVSALPMTDSEGHLVDIFAKFDVIN 269 (405)
Q Consensus 244 ~~~~~lpVvd~~g~lvGivt~~Dl~~ 269 (405)
.+...+||+|++|+++|.+|..+++.
T Consensus 282 ~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 282 RGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred cCCceeEEECCCCcEeeEEEHHHHhh
Confidence 99999999999999999999999875
No 204
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.38 E-value=0.068 Score=49.25 Aligned_cols=110 Identities=20% Similarity=0.208 Sum_probs=71.1
Q ss_pred CCeeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccch------------hhhHHHhhhcc
Q psy744 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNL------------DVTLKEANEHK 290 (405)
Q Consensus 223 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l------------~~~v~~~~~~~ 290 (405)
+.++.|..| +.||+++- +.+.|.+ +|+++-+=+..+++...++.....+ ...+.+.+...
T Consensus 187 kTivfVTHD--idEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 187 KTIVFVTHD--IDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred CEEEEEecC--HHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence 345555444 46787663 4678887 6999999999999877665432111 11222221110
Q ss_pred ccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 291 TDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 291 ~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
.. ..--.........+++..+...+...+||+|++|+++|.||..+|+..
T Consensus 259 ~~--~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 259 EP--ADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred cc--ccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 00 001122344555668888888999999999999999999999999875
No 205
>KOG0476|consensus
Probab=95.32 E-value=0.24 Score=51.92 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=50.8
Q ss_pred cccccccCCCCCeEEEeCCccHHHHHHHHHHcCCceeeeEeCCCC-eeeeEEeHHHHHHHHHH
Q psy744 85 HKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQ-QYVGMLTITDFIKILQM 146 (405)
Q Consensus 85 ~~~~d~~p~s~~vv~v~~~~~v~~A~~~m~~~~i~~~PV~d~~~~-~~~GilT~~Dil~~l~~ 146 (405)
..+.|+| -++|..+..++|..+.-+++..+.++++|++|+... -++|.+..+.+...+..
T Consensus 588 v~VE~iM--V~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 588 VKVEHIM--VTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred EEeeeec--cccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 3566777 678999999999999999999888999999988643 48899999999987764
No 206
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.20 E-value=0.071 Score=52.81 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=61.9
Q ss_pred HHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcCC
Q psy744 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRV 246 (405)
Q Consensus 167 l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~ 246 (405)
+.+++...+.|+|. |+++..+........ . ...+.+ . ..+..++++++++.+++..+.+.++
T Consensus 295 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~--------~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (382)
T TIGR03415 295 VSDRRDTWLFTIDK-----QVRRRDAKLPVQAWA-A--------EQEVES-L---EAAPTVINPDTLMRDVLAARHRTGG 356 (382)
T ss_pred hhhcccceeEeecc-----ceecccchHhHhhcc-c--------ccchhh-h---cccCcccCCCCcHHHHHHHHhcCCC
Confidence 44567788888875 777766654322110 0 113444 2 2567899999999999999888775
Q ss_pred CEEEEECCCCcEEEEEeHHHHHHHHH
Q psy744 247 SALPMTDSEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 247 ~~lpVvd~~g~lvGivt~~Dl~~~~~ 272 (405)
. ++|+|+ |+++|+|+..+++.++.
T Consensus 357 ~-~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 357 A-ILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred C-eEEeeC-CeEEEEEeHHHHHHHHh
Confidence 5 889986 99999999999998765
No 207
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.91 E-value=0.1 Score=49.54 Aligned_cols=84 Identities=15% Similarity=0.218 Sum_probs=63.4
Q ss_pred HHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHHHHHhcC
Q psy744 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERR 245 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~ 245 (405)
.+.+.+...+.+++..++.+|+++..+..+. .+ ...+.++..++++.+.+..+.+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~--------------------~~---~~~~~~v~~d~~~~~~~~~~~~~~ 357 (386)
T COG4175 301 LLRDEGREYGYAVDRGNKFVGVVSIDSLVKA--------------------AL---IDDVLTVDADTPLSEILARIRQAP 357 (386)
T ss_pred hhhhccchhhHHHhccCceeeEEeccchhcc--------------------cc---cccccccCccchHHHHHHHHhcCC
Confidence 4555555555566666778888886555532 11 267788999999999999888776
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHHh
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~~~~~ 273 (405)
. .++|+|++++++|+++...++.++..
T Consensus 358 ~-p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 358 C-PVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred C-ceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 4 58999999999999999999988754
No 208
>KOG0476|consensus
Probab=92.70 E-value=1.8 Score=45.61 Aligned_cols=58 Identities=12% Similarity=0.226 Sum_probs=49.5
Q ss_pred ccccccccccCCeeEEcCCCCHHHHHHHHHhcCCCEEEEECC--CCcEEEEEeHHHHHHHHHh
Q psy744 213 TLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS--EGHLVDIFAKFDVINLAAE 273 (405)
Q Consensus 213 ~v~~i~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGivt~~Dl~~~~~~ 273 (405)
.++++|+ +++.++..+.|..|..+.+.....+.+|+||+ +.-++|.|.++.+..++..
T Consensus 589 ~VE~iMV---~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 589 KVEHIMV---TDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred Eeeeecc---ccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 6788885 89999999999999999888776899999985 3568999999999877643
No 209
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=76.79 E-value=4.9 Score=42.76 Aligned_cols=94 Identities=16% Similarity=0.113 Sum_probs=56.0
Q ss_pred HHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccc---cCCeeEEcCCCCHHHHHHHHH
Q psy744 166 NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGT---YENVETVAEETSIIHALRKFL 242 (405)
Q Consensus 166 ~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~---~~~~~~v~~~~~l~~a~~~m~ 242 (405)
.|...+ ..+.++|.+|.++.+....++++.+... +-.+...|....++.-.++. ...++.|..... -.+.+.
T Consensus 67 ~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~-~~~~G~~w~E~~~GTnaig~al~~~~pv~v~g~EH---~~~~~~ 141 (638)
T PRK11388 67 YMADRE-CALLILDETGCILSRNGDPQTLQQLSAL-GFNDGTYCAEGIIGTNALSLAAISGQPVKTMGDQH---FKQALH 141 (638)
T ss_pred HhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHc-CCccCCccchhccCcCHHHHHHhcCCceEEecHHH---HHHhcc
Confidence 444444 7899999999999999988888765431 11111222222222211111 144555555443 333444
Q ss_pred hcCCCEEEEECCCCcEEEEEeH
Q psy744 243 ERRVSALPMTDSEGHLVDIFAK 264 (405)
Q Consensus 243 ~~~~~~lpVvd~~g~lvGivt~ 264 (405)
.....+.||.|.+|+++|+++.
T Consensus 142 ~~~c~aaPI~d~~G~liGvl~l 163 (638)
T PRK11388 142 NWAFCATPVFDSKGRLTGTIAL 163 (638)
T ss_pred CceEEeeEEEcCCCCEEEEEEE
Confidence 4566789999999999999974
No 210
>KOG2118|consensus
Probab=75.75 E-value=4.4 Score=41.67 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=81.4
Q ss_pred ccccccccccccCCeeEEcCCCCHH-HHHHHHHhcCCCEEEEECCCCc-EEEEEeHHHHHHHHHhccccchhhhHHHhhh
Q psy744 211 NKTLRDLKIGTYENVETVAEETSII-HALRKFLERRVSALPMTDSEGH-LVDIFAKFDVINLAAEKTYTNLDVTLKEANE 288 (405)
Q Consensus 211 ~~~v~~i~~~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~g~-lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~ 288 (405)
...++++|.. ..++.....+..+. +........+++++||.+.+.+ .+|.+-...+++...... ..-..++..
T Consensus 203 ek~~~evmtp-i~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~-~~~~~~v~~--- 277 (498)
T KOG2118|consen 203 EKLVGEVMTP-IEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEV-PLEPLPVSE--- 277 (498)
T ss_pred HHHHHHhccc-hhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcccc-ccccccchh---
Confidence 3456677742 25666777777776 5566667899999999986422 233322222222222111 111222333
Q ss_pred ccccCccCceEecCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q psy744 289 HKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344 (405)
Q Consensus 289 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~l~ 344 (405)
.+......++.++++.+.++.+.+.+.|.+.|.. ...-+|+++..|+ ....
T Consensus 278 ---~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~-~~~~ 328 (498)
T KOG2118|consen 278 ---SALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL-EEVV 328 (498)
T ss_pred ---hhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch-hhhc
Confidence 2456778899999999999999999998888887 6678899999998 6665
No 211
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=62.61 E-value=30 Score=36.86 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhcccc---c-hh-----hhHHHhhhccccCccCceEecCCCC
Q psy744 235 IHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT---N-LD-----VTLKEANEHKTDWFEGVEKCLLDET 305 (405)
Q Consensus 235 ~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~---~-l~-----~~v~~~~~~~~~~~~~~~~v~~~~~ 305 (405)
.++.+.+...+ ..+.++|.+|.++.+....+++......... . .+ -.+.-.+ ....++.|...+.
T Consensus 62 ~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al-----~~~~pv~v~g~EH 135 (638)
T PRK11388 62 EDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAA-----ISGQPVKTMGDQH 135 (638)
T ss_pred HHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHH-----hcCCceEEecHHH
Confidence 34444555555 6788999999999999999887765542111 0 00 0111111 1244556666665
Q ss_pred HHHHHHHHHHcCCCEEEEEcCCCcEEEEEe
Q psy744 306 LFTVMERIVRAEVHRLVVVDEDDHVLGVLS 335 (405)
Q Consensus 306 l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt 335 (405)
..+.+. .......||.|.+|+++|+|+
T Consensus 136 ~~~~~~---~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 136 FKQALH---NWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred HHHhcc---CceEEeeEEEcCCCCEEEEEE
Confidence 554443 345568999999999999996
No 212
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=50.12 E-value=32 Score=25.59 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCcEEEEEeHHHHHHHHHh
Q psy744 318 VHRLVVVDEDDHVLGVLSLSDILVYLVL 345 (405)
Q Consensus 318 ~~~lpVvd~~g~lvGiIt~~DIl~~l~~ 345 (405)
...+-|||++|..+|+++.++.++....
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~ 39 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKE 39 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHH
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHH
Confidence 3567789999999999999999987764
No 213
>PRK10026 arsenate reductase; Provisional
Probab=47.08 E-value=1.7e+02 Score=24.54 Aligned_cols=109 Identities=11% Similarity=0.066 Sum_probs=64.0
Q ss_pred eeEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCC
Q psy744 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDE 304 (405)
Q Consensus 225 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~ 304 (405)
++..+.-.+...|++.+.++++..- ++|= +--=.|..+|...+.... ....++++.++...+..-.-..+.
T Consensus 6 iY~~p~Cst~RKA~~wL~~~gi~~~-~~d~---~~~ppt~~eL~~~l~~~g-----~~~~~lint~~~~yr~L~~~~~~l 76 (141)
T PRK10026 6 IYHNPACGTSRNTLEMIRNSGTEPT-IIHY---LETPPTRDELVKLIADMG-----ISVRALLRKNVEPYEELGLAEDKF 76 (141)
T ss_pred EEeCCCCHHHHHHHHHHHHCCCCcE-EEee---eCCCcCHHHHHHHHHhCC-----CCHHHHHHcCCchHHHcCCCccCC
Confidence 4455566788899999999987643 3330 011157888877776432 123344333222222211112457
Q ss_pred CHHHHHHHHHHcCC--CEEEEEcCCCcEEEEEeHHHHHHHH
Q psy744 305 TLFTVMERIVRAEV--HRLVVVDEDDHVLGVLSLSDILVYL 343 (405)
Q Consensus 305 ~l~~a~~~m~~~~~--~~lpVvd~~g~lvGiIt~~DIl~~l 343 (405)
+..++++.|.+++. .+=.|++++|.++|- ....++..+
T Consensus 77 s~~e~l~ll~~~P~LIKRPIi~~~~~a~i~R-p~e~v~~~l 116 (141)
T PRK10026 77 TDDQLIDFMLQHPILINRPIVVTPLGTRLCR-PSEVVLEIL 116 (141)
T ss_pred CHHHHHHHHHhCccceeCcEEEcCCCeEEEC-CHHHHHHHh
Confidence 88999999999874 233345557888887 555555555
No 214
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=44.51 E-value=52 Score=24.45 Aligned_cols=30 Identities=20% Similarity=0.408 Sum_probs=23.1
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHHhcc
Q psy744 246 VSALPMTDSEGHLVDIFAKFDVINLAAEKT 275 (405)
Q Consensus 246 ~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~ 275 (405)
...+-|+|++|..+|+++.++.+.......
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~ 41 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEKG 41 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHTT
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHcC
Confidence 456788999999999999999998877664
No 215
>KOG2118|consensus
Probab=38.07 E-value=66 Score=33.21 Aligned_cols=128 Identities=10% Similarity=0.179 Sum_probs=82.9
Q ss_pred HhhhcccccccCCCCCeEEEeCCccHH-HHHHHHHHcCCceeeeEeCCCCeeeeEEeHHHHHHHHHHhhCCCCCCHHHHh
Q psy744 81 FFKFHKCYDLIPTSAKLVVFDTQLLVK-KAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELE 159 (405)
Q Consensus 81 ~l~~~~~~d~~p~s~~vv~v~~~~~v~-~A~~~m~~~~i~~~PV~d~~~~~~~GilT~~Dil~~l~~~~~~~~~~~~~l~ 159 (405)
-+...+..|+|.....+..++.+..+. +......+++...+||.+......+|.+=...++.++... .
T Consensus 200 ~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~----~------- 268 (498)
T KOG2118|consen 200 ELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVE----V------- 268 (498)
T ss_pred HHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccc----c-------
Confidence 344557778888888888989888887 5666667999999999988644444431111111111100 0
Q ss_pred hccHHHHHHhcCCCEEEEEeCCCCEEEEEeHHHHHHHHHHhhCCCCCccccccccccccccccCCeeEEcCCCCHHHHHH
Q psy744 160 EHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALR 239 (405)
Q Consensus 160 ~~~i~~~l~~~~i~~lpVvd~~~~vvgilt~~dIl~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~v~~~~~l~~a~~ 239 (405)
.+...++...+ ......++.+++..+.++
T Consensus 269 ------------------------------------------------~~~~~~v~~~~---~~~l~~vp~~~~~~~~l~ 297 (498)
T KOG2118|consen 269 ------------------------------------------------PLEPLPVSESA---LLRLPLVPENMPLLDLLN 297 (498)
T ss_pred ------------------------------------------------ccccccchhhh---ccccccCCCcccHHHHHH
Confidence 00122334444 256677888999999999
Q ss_pred HHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHH
Q psy744 240 KFLERRVSALPMTDSEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 240 ~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~ 272 (405)
.+.+.+.+.+.|.. ...-+++++..|+ ....
T Consensus 298 ~~~~~~~H~~~v~~-~~~~~~~~~l~~~-~~~~ 328 (498)
T KOG2118|consen 298 EFQKGKSHMAVVRN-GHVDIFVLTLEDL-EEVV 328 (498)
T ss_pred HHhhhhceeEEEec-CCcceeeEeccch-hhhc
Confidence 99887777666665 5567899999998 4444
No 216
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=35.84 E-value=45 Score=34.22 Aligned_cols=39 Identities=33% Similarity=0.477 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Q psy744 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342 (405)
Q Consensus 303 ~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~DIl~~ 342 (405)
...+..+.+...+.+-..|+|+. +|++.|+|-+.|+++-
T Consensus 412 p~~l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK~ 450 (681)
T COG2216 412 PEDLDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVKP 450 (681)
T ss_pred CHHHHHHHHHHHhcCCCceEEEE-CCEEEEEEEehhhcch
Confidence 34578888889999999999997 8999999999999764
No 217
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=31.21 E-value=49 Score=26.45 Aligned_cols=17 Identities=41% Similarity=0.558 Sum_probs=13.1
Q ss_pred EEEEEcCCCcEEEEEeH
Q psy744 320 RLVVVDEDDHVLGVLSL 336 (405)
Q Consensus 320 ~lpVvd~~g~lvGiIt~ 336 (405)
..||.|++|+++|+|+.
T Consensus 93 ~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEeeECCCCcEEEEEEE
Confidence 68999889999999974
No 218
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=29.05 E-value=57 Score=26.07 Aligned_cols=17 Identities=24% Similarity=0.554 Sum_probs=12.9
Q ss_pred EEEEECCCCcEEEEEeH
Q psy744 248 ALPMTDSEGHLVDIFAK 264 (405)
Q Consensus 248 ~lpVvd~~g~lvGivt~ 264 (405)
..||.|.+|+++|+|..
T Consensus 93 ~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEeeECCCCcEEEEEEE
Confidence 47999889999999874
No 219
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=26.48 E-value=1.2e+02 Score=31.28 Aligned_cols=41 Identities=10% Similarity=0.204 Sum_probs=31.2
Q ss_pred CHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhc
Q psy744 233 SIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274 (405)
Q Consensus 233 ~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~ 274 (405)
.+..+.+...+.|-.-++|+. +++++|+|..+|+++--..+
T Consensus 414 ~l~~~~~~vs~~GGTPL~V~~-~~~~~GVI~LkDivK~Gi~E 454 (681)
T COG2216 414 DLDAAVDEVSRLGGTPLVVVE-NGRILGVIYLKDIVKPGIKE 454 (681)
T ss_pred HHHHHHHHHHhcCCCceEEEE-CCEEEEEEEehhhcchhHHH
Confidence 355666667777777888886 68999999999998754433
No 220
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=25.52 E-value=3.4e+02 Score=21.46 Aligned_cols=81 Identities=7% Similarity=0.010 Sum_probs=47.1
Q ss_pred EEcCCCCHHHHHHHHHhcCCCEEEEEC--CCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCC
Q psy744 227 TVAEETSIIHALRKFLERRVSALPMTD--SEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDE 304 (405)
Q Consensus 227 ~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~ 304 (405)
..+.-.+...|.+.+.++++..-. +| +++ +|..++...+.... ..+.++++.++...+..-.-..+.
T Consensus 5 ~~~~C~t~rkA~~~L~~~~i~~~~-~di~~~~-----~t~~el~~~l~~~~-----~~~~~lin~~~~~y~~l~~~~~~l 73 (112)
T cd03034 5 HNPRCSKSRNALALLEEAGIEPEI-VEYLKTP-----PTAAELRELLAKLG-----ISPRDLLRTKEAPYKELGLADPEL 73 (112)
T ss_pred ECCCCHHHHHHHHHHHHCCCCeEE-EecccCC-----cCHHHHHHHHHHcC-----CCHHHHHhcCCchHHHcCCCccCC
Confidence 344556778899999988876543 33 222 57888877765442 123344433221112211112467
Q ss_pred CHHHHHHHHHHcCC
Q psy744 305 TLFTVMERIVRAEV 318 (405)
Q Consensus 305 ~l~~a~~~m~~~~~ 318 (405)
+..+++++|.+++.
T Consensus 74 s~~e~i~ll~~~P~ 87 (112)
T cd03034 74 SDEELIDAMAAHPI 87 (112)
T ss_pred CHHHHHHHHHhCcC
Confidence 78999999999874
No 221
>PF14044 NETI: NETI protein
Probab=23.70 E-value=95 Score=21.64 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=18.7
Q ss_pred EecCCCCHHHHHHHHHHcCCC
Q psy744 299 KCLLDETLFTVMERIVRAEVH 319 (405)
Q Consensus 299 ~v~~~~~l~~a~~~m~~~~~~ 319 (405)
.|.++.|+.+.++.|.+.++.
T Consensus 3 eV~enETI~~CL~RM~~eGY~ 23 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGYM 23 (57)
T ss_pred eccCCCcHHHHHHHHHHcCCC
Confidence 478899999999999999873
No 222
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=23.47 E-value=1.1e+02 Score=26.90 Aligned_cols=17 Identities=24% Similarity=0.083 Sum_probs=8.8
Q ss_pred CHHHHHHHHHhcCCCEE
Q psy744 233 SIIHALRKFLERRVSAL 249 (405)
Q Consensus 233 ~l~~a~~~m~~~~~~~l 249 (405)
+..+|++.+.+.+.+-+
T Consensus 36 ~~~eAl~~A~~~~lDLV 52 (177)
T PRK00028 36 STREALELAEEAGLDLV 52 (177)
T ss_pred eHHHHHHHHHHcCCCEE
Confidence 44555555555555433
No 223
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=23.40 E-value=1.6e+02 Score=25.60 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=26.0
Q ss_pred CCCEEEEECCCCcEEEEEeHHHHHHHHHhccc
Q psy744 245 RVSALPMTDSEGHLVDIFAKFDVINLAAEKTY 276 (405)
Q Consensus 245 ~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~ 276 (405)
+...+-++|++|.-+|+++..+-+....+...
T Consensus 17 r~~evrlIg~~GeqlGiv~~~eAL~lA~e~~L 48 (176)
T COG0290 17 RAREVRLIGEDGEQLGIVSIEEALKLAEEAGL 48 (176)
T ss_pred cccEEEEECCCCcEEcceeHHHHHHHHHHcCC
Confidence 34567889999999999999999988776543
No 224
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=22.60 E-value=61 Score=25.25 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.3
Q ss_pred cCCCEEEEEcCCCcEEEE
Q psy744 316 AEVHRLVVVDEDDHVLGV 333 (405)
Q Consensus 316 ~~~~~lpVvd~~g~lvGi 333 (405)
.+.+.-||+|.+|+++||
T Consensus 103 ~G~SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 103 PGSSGGPVFDSDGRVVGI 120 (120)
T ss_dssp TTTTTSEEEETTSEEEEE
T ss_pred CCcEeHhEECCCCEEEeC
Confidence 566678999999999997
No 225
>PRK12559 transcriptional regulator Spx; Provisional
Probab=22.40 E-value=4.4e+02 Score=21.63 Aligned_cols=98 Identities=13% Similarity=0.123 Sum_probs=51.8
Q ss_pred EEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCCH
Q psy744 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETL 306 (405)
Q Consensus 227 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~l 306 (405)
+.+.-.+...|.+.+.++++..- .+|=.. .-.+..++...+.... ..+.++++.++...+..-.-..+.+.
T Consensus 6 ~~~~C~~crkA~~~L~~~gi~~~-~~di~~---~~~s~~el~~~l~~~~-----~g~~~lin~~~~~~k~l~~~~~~ls~ 76 (131)
T PRK12559 6 TTASCASCRKAKAWLEENQIDYT-EKNIVS---NSMTVDELKSILRLTE-----EGATEIISTRSKTFQDLNINIEELSL 76 (131)
T ss_pred eCCCChHHHHHHHHHHHcCCCeE-EEEeeC---CcCCHHHHHHHHHHcC-----CCHHHHHhcCcHHHHhCCCCcccCCH
Confidence 34444566788888888887643 333111 1257777777665421 11333333222222221111246678
Q ss_pred HHHHHHHHHcCC--CEEEEEcCCCcEEEE
Q psy744 307 FTVMERIVRAEV--HRLVVVDEDDHVLGV 333 (405)
Q Consensus 307 ~~a~~~m~~~~~--~~lpVvd~~g~lvGi 333 (405)
.+++++|.+++. .+=.|++++.-++|.
T Consensus 77 ~e~i~ll~~~P~LikRPIi~~~~~~~iGf 105 (131)
T PRK12559 77 NEFYKLIIEHPLMLRRPIMLDEKRLQIGF 105 (131)
T ss_pred HHHHHHHHhCcceEeCCEEEeCCEEEEcC
Confidence 999999999874 121234444556664
No 226
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=22.39 E-value=1e+02 Score=26.63 Aligned_cols=16 Identities=25% Similarity=0.007 Sum_probs=8.7
Q ss_pred CHHHHHHHHHhcCCCE
Q psy744 233 SIIHALRKFLERRVSA 248 (405)
Q Consensus 233 ~l~~a~~~m~~~~~~~ 248 (405)
+..+|++.+.+.+.+-
T Consensus 24 ~~~eAl~~A~~~~lDL 39 (165)
T TIGR00168 24 SREEALEIAEEAGLDL 39 (165)
T ss_pred cHHHHHHHHHHcCCcE
Confidence 3555555555555553
No 227
>CHL00199 infC translation initiation factor 3; Provisional
Probab=22.38 E-value=1.2e+02 Score=26.78 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=12.2
Q ss_pred EEEEECCCCcEEEEEeHHHHHHHHH
Q psy744 248 ALPMTDSEGHLVDIFAKFDVINLAA 272 (405)
Q Consensus 248 ~lpVvd~~g~lvGivt~~Dl~~~~~ 272 (405)
.+-|+|++|..+|+++..+.+....
T Consensus 26 ~VrlI~~~G~~lGv~~~~eAl~~A~ 50 (182)
T CHL00199 26 KVRVIDDSGEQLGIFTSEQAIQLAA 50 (182)
T ss_pred EEEEECCCCcCCCceeHHHHHHHHH
Confidence 3444455555555555555444443
No 228
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=22.10 E-value=4.1e+02 Score=21.88 Aligned_cols=106 Identities=12% Similarity=0.130 Sum_probs=55.2
Q ss_pred eEEcCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHHhccccchhhhHHHhhhccccCccCceEecCCCC
Q psy744 226 ETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDET 305 (405)
Q Consensus 226 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Dl~~~~~~~~~~~l~~~v~~~~~~~~~~~~~~~~v~~~~~ 305 (405)
++.+.-.+...|.+.+.++++..-. +|=.. .-++..+|...+.... ..+.++++.++...+..-.-..+.+
T Consensus 5 Y~~~~C~~crkA~~~L~~~~i~~~~-~d~~~---~~~s~~eL~~~l~~~~-----~~~~~lin~~~~~~k~L~~~~~~ls 75 (132)
T PRK13344 5 YTISSCTSCKKAKTWLNAHQLSYKE-QNLGK---EPLTKEEILAILTKTE-----NGIESIVSSKNRYAKALDCDIEELS 75 (132)
T ss_pred EeCCCCHHHHHHHHHHHHcCCCeEE-EECCC---CCCCHHHHHHHHHHhC-----CCHHHhhccCcHHHHhCCcchhcCC
Confidence 3444455677888889998877433 33111 1157777777665431 1123333222211122111124677
Q ss_pred HHHHHHHHHHcCC-CEEEEE-cCCCcEEEEEeHHHHHH
Q psy744 306 LFTVMERIVRAEV-HRLVVV-DEDDHVLGVLSLSDILV 341 (405)
Q Consensus 306 l~~a~~~m~~~~~-~~lpVv-d~~g~lvGiIt~~DIl~ 341 (405)
..++++.|.++.. =.-||+ +++.-++| -...++-.
T Consensus 76 ~~e~i~ll~~~P~LikRPIv~~~~~~~iG-~~~e~~~~ 112 (132)
T PRK13344 76 VNEVIDLIQENPRILKSPILIDDKRLQVG-YKEDDIRA 112 (132)
T ss_pred HHHHHHHHHhCccceeCcEEEeCCEEEeC-CCHHHHHH
Confidence 8999999999864 223444 43444666 33333333
No 229
>PHA00673 acetyltransferase domain containing protein
Probab=21.84 E-value=1.7e+02 Score=25.07 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHH
Q psy744 304 ETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLS 337 (405)
Q Consensus 304 ~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiIt~~ 337 (405)
.+-.++++.|.+.+-..+.|..++|+++|.+...
T Consensus 40 ~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~ 73 (154)
T PHA00673 40 APDHHAYAGMEAAGVAHFLGVFRGEELVGFACLL 73 (154)
T ss_pred chhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEE
Confidence 5677779999999999999987789999976654
Done!