RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy744
(405 letters)
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Rattus
norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E*
2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Length = 330
Score = 271 bits (695), Expect = 4e-89
Identities = 172/312 (55%), Positives = 214/312 (68%), Gaps = 28/312 (8%)
Query: 68 DLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV 127
+ + ++ F K H+CYDLIPTS+KLVVFDT L VKKAFFALV NG+RAAPLWDS
Sbjct: 18 QETPESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK 77
Query: 128 HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETN--------------------- 166
Q +VGMLTITDFI IL YY S+ + + ELEEHK+ET
Sbjct: 78 KQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASL 137
Query: 167 ------LIDYKIHRLPVID-EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKI 219
LI KIHRLPVID E GN LYILTHKRIL+FL L+I + PKP F++K+L +L+I
Sbjct: 138 FDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQI 197
Query: 220 GTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNL 279
GTY N+ V T + AL F++ RVSALP+ D +G +VDI++KFDVINLAAEKTY NL
Sbjct: 198 GTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNL 257
Query: 280 DVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDI 339
DV++ +A +H++ +FEGV KC L ETL ++ R+V AEVHRLVVVDE D V G++SLSDI
Sbjct: 258 DVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDI 317
Query: 340 LVYLVLKPSDDD 351
L LVL +
Sbjct: 318 LQALVLTGGEKK 329
Score = 61.1 bits (148), Expect = 1e-10
Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 16/167 (9%)
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDS-EGHLVDIFAKFDVINLAAEKTYTNLDVTLKE 285
+ A + V A P+ DS + V + D IN+ Y + V + E
Sbjct: 49 VFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRY-YKSALVQIYE 107
Query: 286 ANEHKTDWFEGVEK---------CLLDETLFTVMERIVRAEVHRLVVVDEDD-HVLGVLS 335
EHK + + V + +LF + ++R ++HRL V+D + + L +L+
Sbjct: 108 LEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILT 167
Query: 336 LSDILVYLVLKPSDDDIGVDETSSDSEVPV----DPDLASSDDKVFE 378
IL +L L ++ + S E+ + + + + V+
Sbjct: 168 HKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYV 214
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,
nucleotide-binding, serine/T protein kinase,
transferase, CBS domain; HET: ADP ATP; 2.41A
{Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G*
2oox_G* 2ooy_G*
Length = 334
Score = 269 bits (689), Expect = 5e-88
Identities = 95/329 (28%), Positives = 168/329 (51%), Gaps = 39/329 (11%)
Query: 70 EKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQ 129
+ G + F + YD++PTS +L+VFD L VK + L N I +APLWDS
Sbjct: 7 TQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEAN 66
Query: 130 QYVGMLTITDFIKILQMYYTSSSIT--MEELEEHKLE----------------------- 164
++ G+LT+ DF+ +++ YY SSS + E+++ +L
Sbjct: 67 KFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMH 126
Query: 165 ------TNLIDYKIHRLPVIDEMGN-----VLYILTHKRILRFLFLYINDLPKPSFLNKT 213
+ + R+P+ID G ++ +LT RIL+F+ + + + L
Sbjct: 127 SLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKET---AMLRVP 183
Query: 214 LRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273
L + IGT+ N+ T + ET + ++ E+ +SA+P+ +SEG L++++ DV++L +
Sbjct: 184 LNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQD 243
Query: 274 KTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGV 333
Y+NLD+++ EA + F+GV C + L + + I + VHRL VVDE+ + G+
Sbjct: 244 GDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGI 303
Query: 334 LSLSDILVYLVLKPSDDDIGVDETSSDSE 362
LSL+DIL Y++ + ++T +
Sbjct: 304 LSLADILNYIIYDKTTTPGVPEQTDNFES 332
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol,
protein binding; HET: ADP; 2.30A {Saccharomyces
cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Length = 323
Score = 243 bits (622), Expect = 3e-78
Identities = 98/315 (31%), Positives = 170/315 (53%), Gaps = 38/315 (12%)
Query: 68 DLEKDGGNQIFVKFFKFHKCYDLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSV 127
+E+ + KF YD++P S +L+V DT LLVKK+ L+ N I +APLWDS
Sbjct: 13 SIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSK 72
Query: 128 HQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLETN--------------------- 166
++ G+LT TDFI ++Q Y+++ E +++ +L+
Sbjct: 73 TSRFAGLLTTTDFINVIQYYFSNPD-KFELVDKLQLDGLKDIERALGVDQLDTASIHPSR 131
Query: 167 --------LIDYKIHRLPVIDEMGN-----VLYILTHKRILRFLFLYINDLPKPSFLNKT 213
+++ + R+P+ID+ V+ +LT RIL+F+ L + FL
Sbjct: 132 PLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE---THFLKIP 188
Query: 214 LRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273
+ DL I T +N+++ T +I ++ + RVS++P+ D G+L++++ +DV+ L
Sbjct: 189 IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG 248
Query: 274 KTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGV 333
Y +L +++ EA ++D FEGV C ++ L T+M+ I +A VHR VVD+ ++GV
Sbjct: 249 GIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGV 308
Query: 334 LSLSDILVYLVLKPS 348
L+LSDIL Y++L +
Sbjct: 309 LTLSDILKYILLGSN 323
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS
domain, lipid synthesis, fatty acid biosynthesis; HET:
AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Length = 152
Score = 171 bits (435), Expect = 2e-52
Identities = 83/147 (56%), Positives = 113/147 (76%)
Query: 199 LYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHL 258
+ ++ PKP F++K+L +L+IGTY N+ V T + AL F++ RVSALP+ D +G +
Sbjct: 5 HHHHEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRV 64
Query: 259 VDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEV 318
VDI++KFDVINLAAEKTY NLDV++ +A +H++ +FEGV KC L ETL T++ R+V AEV
Sbjct: 65 VDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEV 124
Query: 319 HRLVVVDEDDHVLGVLSLSDILVYLVL 345
HRLVVVDE+D V G++SLSDIL LVL
Sbjct: 125 HRLVVVDENDVVKGIVSLSDILQALVL 151
Score = 43.0 bits (102), Expect = 3e-05
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 91 IPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKIL-QMYYT 149
I T A + + T V A V + + A P+ D + V + + D I + + Y
Sbjct: 25 IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEKTYN 83
Query: 150 SSSITMEELEEHKLETN------------------LIDYKIHRLPVIDEMGNVLYILTHK 191
+ +++ + +H+ L++ ++HRL V+DE V I++
Sbjct: 84 NLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLS 143
Query: 192 RILRFLFL 199
IL+ L L
Sbjct: 144 DILQALVL 151
Score = 35.3 bits (82), Expect = 0.013
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDD 350
++ + V+ V L VVDE V+ + S D++ K ++
Sbjct: 37 TTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNN 84
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown
function; HET: ADP AMP; 2.10A {Methanocaldococcus
jannaschii} PDB: 3lfz_A*
Length = 280
Score = 165 bits (420), Expect = 1e-48
Identities = 46/283 (16%), Positives = 97/283 (34%), Gaps = 41/283 (14%)
Query: 91 IPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTS 150
I + K+V ++KA + N R P+ ++ + + VG++T D + +
Sbjct: 8 IAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKY 67
Query: 151 SSITMEELEEHKLETN--------------------------LIDYKIHRLPVIDEMGNV 184
+ I + N + + P++++ +
Sbjct: 68 NLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQL 127
Query: 185 LYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLER 244
+ ++T + ++R L I++ + +V + R +
Sbjct: 128 ISLITERDVIRALLDKIDENEV----------IDDYITRDVIVATPGERLKDVARTMVRN 177
Query: 245 RVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTN--LDVTLKEANEHKTDWF--EGVEKC 300
LP+ EG LV I D I L N ++E + + V
Sbjct: 178 GFRRLPVVS-EGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMKRDVITA 236
Query: 301 LLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343
+ L + E +V ++ L VVDE+ + G+++ D+L Y
Sbjct: 237 KEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF 279
Score = 70.2 bits (172), Expect = 8e-14
Identities = 28/181 (15%), Positives = 66/181 (36%), Gaps = 17/181 (9%)
Query: 106 VKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEHKLET 165
+ +A + + AP+ + Q + ++T D I+ L + +++ +
Sbjct: 103 IDEAIETFLTKNVGGAPIVND-ENQLISLITERDVIRALLDKI-DENEVIDDYITRDVIV 160
Query: 166 ------------NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKT 213
++ RLPV+ E G ++ I+T ++ L + +
Sbjct: 161 ATPGERLKDVARTMVRNGFRRLPVVSE-GRLVGIITSTDFIKLLGSDWAFNHMQTGNVRE 219
Query: 214 LRDLKIGTY--ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLA 271
+ ++++ +V T E + + + ALP+ D + I + DV+
Sbjct: 220 ITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF 279
Query: 272 A 272
A
Sbjct: 280 A 280
Score = 65.9 bits (161), Expect = 2e-12
Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 8/138 (5%)
Query: 215 RDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDS-EGHLVDIFAKFDVINLAAE 273
R +KI + + TV T+I AL E + LP+ ++ +V I D+++
Sbjct: 4 RVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGG 63
Query: 274 KTYTNLDVTLKEANEHKTDW-------FEGVEKCLLDETLFTVMERIVRAEVHRLVVVDE 326
+ NL E N E V + + +E + V +V++
Sbjct: 64 GSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVND 123
Query: 327 DDHVLGVLSLSDILVYLV 344
++ ++ +++ D++ L+
Sbjct: 124 ENQLISLITERDVIRALL 141
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding;
1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB:
2nye_A
Length = 144
Score = 158 bits (401), Expect = 2e-47
Identities = 50/143 (34%), Positives = 88/143 (61%)
Query: 206 KPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKF 265
+ FL + DL I T +N+++ T +I ++ + RVS++P+ D G+L++++ +
Sbjct: 2 ETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAY 61
Query: 266 DVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVD 325
DV+ L Y +L +++ EA ++D FEGV C ++ L T+M+ I +A VHR VVD
Sbjct: 62 DVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD 121
Query: 326 EDDHVLGVLSLSDILVYLVLKPS 348
+ ++GVL+LSDIL Y++L +
Sbjct: 122 DVGRLVGVLTLSDILKYILLGSN 144
Score = 41.8 bits (99), Expect = 6e-05
Identities = 22/113 (19%), Positives = 47/113 (41%), Gaps = 20/113 (17%)
Query: 106 VKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKIL-QMYYTSSSITMEEL------ 158
V L + + P+ D + + + D + ++ Y S+++ E
Sbjct: 30 VIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSD 88
Query: 159 ---------EEHKLET---NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFL 199
+ KL T N+ ++HR V+D++G ++ +LT IL+++ L
Sbjct: 89 DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL 141
Score = 39.5 bits (93), Expect = 3e-04
Identities = 11/72 (15%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 279 LDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSD 338
L + + + N + ++ C + + V++ + + V + ++DE+ +++ V D
Sbjct: 6 LKIPIGDLNIITQ---DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYD 62
Query: 339 ILVYLVLKPSDD 350
+L + +D
Sbjct: 63 VLGLIKGGIYND 74
>3ddj_A CBS domain-containing protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP:
d.37.1.1 d.37.1.1
Length = 296
Score = 152 bits (386), Expect = 2e-43
Identities = 42/282 (14%), Positives = 91/282 (32%), Gaps = 37/282 (13%)
Query: 94 SAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSI 153
+ + + AF + GI + + + G+LT D + ++ Y S
Sbjct: 27 IKNPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCKDSCS 83
Query: 154 TMEELEEHKLE----------------------TNLIDYKIHRLPVIDEMGNVLYILTHK 191
+ ++ LPV+D + I+T +
Sbjct: 84 QGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTER 143
Query: 192 RILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPM 251
L P F++ V+T+ +E + A++ L R LP+
Sbjct: 144 EFLLLYKDLDEIFPVKVFMST-----------KVQTIYKEVRLDQAVKLMLRRGFRRLPV 192
Query: 252 TDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVME 311
D + +V I + I A K LD K + ++
Sbjct: 193 IDDDNKVVGIVTVVNAIKQLA-KAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAA 251
Query: 312 RIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIG 353
++ + L+++++D+ + G+++ D+L+ L +
Sbjct: 252 EMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILVMEKFK 293
Score = 81.7 bits (202), Expect = 1e-17
Identities = 35/215 (16%), Positives = 74/215 (34%), Gaps = 15/215 (6%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
+ + I R+ V + + +LT + +L + Y D + I Y N
Sbjct: 46 INEGGIGRIIVAN--EKIEGLLTTRDLLSTVESYCKD-SCSQGDLYHISTTPIIDYMTPN 102
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK 284
TV + A+ + R +LP+ D V I + + + L + +
Sbjct: 103 PVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDLD------EIF 156
Query: 285 EANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344
+ V+ + L ++ ++R RL V+D+D+ V+G++++ + + L
Sbjct: 157 PVKVFMS---TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLA 213
Query: 345 LKPSDDDIGVDETSSDSEV-PVDPDLASSDDKVFE 378
D +V + V
Sbjct: 214 KAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNR 248
>2yzq_A Putative uncharacterized protein PH1780;
sheet/helix/sheet/sheet/helix, structural genomics,
unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
horikoshii} SCOP: d.37.1.1 d.37.1.1
Length = 282
Score = 76.8 bits (189), Expect = 6e-16
Identities = 36/174 (20%), Positives = 71/174 (40%), Gaps = 21/174 (12%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVE 226
YK+ PV+++ G ++ I++ KRIL + + L L +V
Sbjct: 27 FKKYKVRSFPVVNKEGKLVGIISVKRILV------------NPDEEQLAML---VKRDVP 71
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286
V E ++ A + LE + + DS+G V I D+I K+ V ++
Sbjct: 72 VVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPY 131
Query: 287 NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340
+ V L ++ ++ + L VVD + +++G++ +D+L
Sbjct: 132 YQRY------VSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL 179
Score = 62.1 bits (151), Expect = 4e-11
Identities = 49/270 (18%), Positives = 103/270 (38%), Gaps = 42/270 (15%)
Query: 106 VKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFI-----KILQMYYTSSSITMEE--- 157
A +R+ P+ + + VG++++ + + L M ++E
Sbjct: 20 RNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNPDEEQLAMLVKRDVPVVKENDT 78
Query: 158 LEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDL 217
L++ +++Y R+ V+D G + ILT I+R + ++ K
Sbjct: 79 LKK--AAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIR-RYFAKSEKYKGV------EIE 129
Query: 218 KIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVIN-------- 269
V V E T + AL+ L ALP+ DSEG+LV I + D++
Sbjct: 130 PYYQ-RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIM 188
Query: 270 LAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLL---------------DETLFTVMERIV 314
+ E ++ + + E++ ++ T+ V ++
Sbjct: 189 KSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMA 248
Query: 315 RAEVHRLVVVDEDDHVLGVLSLSDILVYLV 344
+ + +L V+ + ++G++ D+L LV
Sbjct: 249 KYSIEQLPVIRGEGDLIGLIRDFDLLKVLV 278
Score = 53.6 bits (129), Expect = 3e-08
Identities = 27/140 (19%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK-----TYT 277
+N T+ + +AL F + +V + P+ + EG LV I + ++ E+
Sbjct: 9 QNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQLAMLVKR 68
Query: 278 NLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLS 337
++ +KE ++TL + ++ + R+VVVD +G+L++
Sbjct: 69 DV-PVVKE-----------------NDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVG 110
Query: 338 DIL-VYLVLKPSDDDIGVDE 356
DI+ Y + ++
Sbjct: 111 DIIRRYFAKSEKYKGVEIEP 130
Score = 50.6 bits (121), Expect = 3e-07
Identities = 36/202 (17%), Positives = 70/202 (34%), Gaps = 35/202 (17%)
Query: 106 VKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQM------------YYTSSSI 153
+KKA ++ R + DS + VG+LT+ D I+ YY
Sbjct: 79 LKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQRYVS 137
Query: 154 T-MEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLY-------INDLP 205
E L+ LPV+D GN++ I+ +LR + +
Sbjct: 138 IVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASS 197
Query: 206 KPSFLNKTLRDLKIGTYE--------------NVETVAEETSIIHALRKFLERRVSALPM 251
+ ++ ++ L +E +V ++ K + + LP+
Sbjct: 198 EEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPV 257
Query: 252 TDSEGHLVDIFAKFDVINLAAE 273
EG L+ + FD++ + +
Sbjct: 258 IRGEGDLIGLIRDFDLLKVLVK 279
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 73.6 bits (181), Expect = 1e-15
Identities = 31/182 (17%), Positives = 68/182 (37%), Gaps = 16/182 (8%)
Query: 204 LPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFA 263
+P+ + + + N +TV T++ A++ E + L + D G+ V + +
Sbjct: 1 VPRGGHMFMRVEKIMN---SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLS 57
Query: 264 KFDVINLAAEKTYTNLDVTLKE---ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHR 320
+ +I + +V ++ + K D + V + + R
Sbjct: 58 ERSIIKRFIPRNKKPDEVPIRLVMRKP---------IPKVKSDYDVKDVAAYLSENGLER 108
Query: 321 LVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVPVDPDLASSDDKVFEEN 380
VVD+ V+G+++L+D+ YL D + T + + + V+ E
Sbjct: 109 CAVVDDPGRVVGIVTLTDLSRYLSRASITDILLSHRTKDYQHLCPKCGVGVLEP-VYNEK 167
Query: 381 EE 382
E
Sbjct: 168 GE 169
Score = 37.0 bits (86), Expect = 0.004
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 14/105 (13%)
Query: 106 VKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFI-KILQMYYTSSSITMEELEEHKLE 164
V A + N + + D + VG+L+ I + + + + + +
Sbjct: 28 VFDAVKIMNENHLYGLVVKDD-NGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIP 86
Query: 165 T------------NLIDYKIHRLPVIDEMGNVLYILTHKRILRFL 197
L + + R V+D+ G V+ I+T + R+L
Sbjct: 87 KVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL 131
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox
regulator, plant CBS domain, thiored chloroplast,
membrane protein; 1.91A {Arabidopsis thaliana}
Length = 180
Score = 72.5 bits (178), Expect = 3e-15
Identities = 32/166 (19%), Positives = 67/166 (40%), Gaps = 20/166 (12%)
Query: 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVT 282
+N+ V TS+ AL +E++V+ LP+ D LV + + +D++ L + + D
Sbjct: 14 QNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTN 73
Query: 283 LKEANEHKTDWFEGVEKCLL--------------------DETLFTVMERIVRAEVHRLV 322
L + F ++K + L ++ + RL
Sbjct: 74 LFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLP 133
Query: 323 VVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVPVDPD 368
VVD D ++G+L+ +++ + + D + +D+ + D D
Sbjct: 134 VVDADGKLIGILTRGNVVRAALQIKRNADSISGRSQNDTNLFPDVD 179
Score = 59.7 bits (145), Expect = 9e-11
Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 18/125 (14%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY---- 222
L++ K+ LPVID+ ++ +++ +L + + K
Sbjct: 32 LVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKL 91
Query: 223 --------------ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVI 268
+ V + T++ A R LE + LP+ D++G L+ I + +V+
Sbjct: 92 ISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVV 151
Query: 269 NLAAE 273
A +
Sbjct: 152 RAALQ 156
Score = 42.4 bits (100), Expect = 7e-05
Identities = 15/74 (20%), Positives = 30/74 (40%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSE 362
++ +E +V +V L V+D++ ++GV+S D+L + + DS
Sbjct: 22 STSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDST 81
Query: 363 VPVDPDLASSDDKV 376
+L K
Sbjct: 82 WKTFNELQKLISKT 95
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR
fold, structural genomics, joint center for structural
genomics, JCSG; 1.87A {Thermotoga maritima} SCOP:
d.37.1.1
Length = 157
Score = 71.5 bits (176), Expect = 4e-15
Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 7/124 (5%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
V E+T I + + LE V+ + LV + ++ ++ + +
Sbjct: 25 KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEE 84
Query: 284 KEANEHKTDWFEGVEK-------CLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSL 336
+ K + + +D L ++ ++ + + VVDE ++G L+
Sbjct: 85 LIRSSMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNS 144
Query: 337 SDIL 340
+IL
Sbjct: 145 LEIL 148
Score = 60.4 bits (147), Expect = 3e-11
Identities = 13/113 (11%), Positives = 45/113 (39%), Gaps = 5/113 (4%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFL-YINDLPKPSFLNKTLRDLKIGTYE-- 223
+++ + R + ++ ++ +L+ + +PK + +++ L
Sbjct: 42 ILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEI 101
Query: 224 --NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274
+ V +T + AL+ ++ + +P+ D +G +V +++ +
Sbjct: 102 MLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG 154
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound
nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP
NAI; 2.70A {Agrobacterium tumefaciens str}
Length = 165
Score = 69.3 bits (170), Expect = 2e-14
Identities = 27/135 (20%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Query: 210 LNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVIN 269
+ ++DL +V TV + SI A ++ A+ +TD++G ++ IF + D++
Sbjct: 22 MATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVK 81
Query: 270 LAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDH 329
A + +L ++ T + V +C + T +ME + + V + +
Sbjct: 82 AVAGQGAASLQQSVS---VAMT---KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEE-NGR 134
Query: 330 VLGVLSLSDILVYLV 344
+ G++S+ D++ +
Sbjct: 135 LAGIISIGDVVKARI 149
Score = 42.7 bits (101), Expect = 4e-05
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 13/110 (11%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
L +KI + V D G VL I T + +++ + + +N
Sbjct: 53 LHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQ----------GAASLQQSVSVAMTKN 102
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274
V ++ + R +P+ + G L I + DV+ +
Sbjct: 103 VVRCQHNSTTDQLMEIMTGGRFRHVPVEE-NGRLAGIISIGDVVKARIGE 151
Score = 33.4 bits (77), Expect = 0.054
Identities = 9/49 (18%), Positives = 22/49 (44%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDD 351
D ++ + ++ +VV D D VLG+ + D++ + + +
Sbjct: 43 DVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASL 91
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding
protein, ligand-BIND protein; 2.10A {Pyrobaculum
aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Length = 141
Score = 67.3 bits (165), Expect = 8e-14
Identities = 23/138 (16%), Positives = 53/138 (38%), Gaps = 14/138 (10%)
Query: 209 FLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMT--DSEGHLVDIFAKFD 266
+ +L ++ E +I + + RV +T D+ V + ++ D
Sbjct: 2 AMAIRTSELLK---RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERD 58
Query: 267 VINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDE 326
++ A++ +LD L + + E++ R + +VVV++
Sbjct: 59 ILRAVAQRL--DLDGPAMPIANS-------PITVLDTDPVHVAAEKMRRHNIRHVVVVNK 109
Query: 327 DDHVLGVLSLSDILVYLV 344
+ ++GVLS+ D+
Sbjct: 110 NGELVGVLSIRDLCFERA 127
Score = 39.2 bits (92), Expect = 4e-04
Identities = 16/109 (14%), Positives = 38/109 (34%), Gaps = 13/109 (11%)
Query: 167 LIDYKIHRLPVI--DEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYEN 224
L ++ + D + +++ + ILR + ++ L+ I +
Sbjct: 31 LAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD-------LDGPAMP--IAN--S 79
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273
TV + + A K + + + + G LV + + D+ A
Sbjct: 80 PITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI 128
Score = 29.9 bits (68), Expect = 0.76
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 9/81 (11%)
Query: 300 CLLDETLFTVMERIVRAEVHRLVVVDEDD--HVLGVLSLSDILVYLVLKPSDDDIGVDET 357
T+ V + + V V+ D+ + V+S DI + V + D D
Sbjct: 18 LPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDI-LRAVAQRLDLDGPAMPI 76
Query: 358 SSDSEVPVDPDLASSDDKVFE 378
++ P D V
Sbjct: 77 AN------SPITVLDTDPVHV 91
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix,
structural genomics, unknown function, NPPSFA; 2.25A
{Pyrococcus horikoshii} SCOP: d.37.1.1
Length = 138
Score = 65.3 bits (160), Expect = 4e-13
Identities = 23/143 (16%), Positives = 58/143 (40%), Gaps = 17/143 (11%)
Query: 210 LNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVIN 269
+ ++ + + V TS+ A R +E V +L + + +G++V F K D+I
Sbjct: 5 MKAPIKVYMT---KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIR 61
Query: 270 LAAEKTYTNLDVTLKE---ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDE 326
D+ ++ N + ++ L V+ ++ + +++ +
Sbjct: 62 RVIVPG-LPYDIPVERIMTRN---------LITANVNTPLGEVLRKMAEHRIKHILIEE- 110
Query: 327 DDHVLGVLSLSDILVYLVLKPSD 349
+ ++G+ +LSD+L +
Sbjct: 111 EGKIVGIFTLSDLLEASRRRLET 133
Score = 46.8 bits (112), Expect = 1e-06
Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
++++ + L VI++ GNV+ T D+ + + D+ + N
Sbjct: 33 MMEFDVGSLVVINDDGNVVGFFTKS-----------DIIRRVIVPGLPYDIPVERIMTRN 81
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274
+ T T + LRK E R+ + + + EG +V IF D++ + +
Sbjct: 82 LITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRR 130
Score = 36.8 bits (86), Expect = 0.003
Identities = 13/66 (19%), Positives = 34/66 (51%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSE 362
++ ++ +V LVV+++D +V+G + SDI+ +++ DI V+ + +
Sbjct: 23 STSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNL 82
Query: 363 VPVDPD 368
+ + +
Sbjct: 83 ITANVN 88
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Length = 133
Score = 65.3 bits (160), Expect = 4e-13
Identities = 19/132 (14%), Positives = 52/132 (39%), Gaps = 11/132 (8%)
Query: 214 LRDLKIGTY--ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLA 271
+ + + Y V +V ++ + + E+ + ++ + D V I + D++
Sbjct: 1 MEEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAI 59
Query: 272 AEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVL 331
+ +L+ +E + D + + + + + L VVD+ ++
Sbjct: 60 GKGK--SLETKAEEFMTAS------LITIREDSPITGALALMRQFNIRHLPVVDDKGNLK 111
Query: 332 GVLSLSDILVYL 343
G++S+ DI +
Sbjct: 112 GIISIRDITRAI 123
Score = 48.7 bits (117), Expect = 2e-07
Identities = 19/110 (17%), Positives = 44/110 (40%), Gaps = 15/110 (13%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
+ + I + V+D + I+T + I++ + + K + +
Sbjct: 30 MTEKNIGSVIVVDG-NKPVGIITERDIVKAI------------GKGKSLETKAEEFMTAS 76
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274
+ T+ E++ I AL + + LP+ D +G+L I + D+ +
Sbjct: 77 LITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM 126
Score = 36.0 bits (84), Expect = 0.006
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 23/108 (21%)
Query: 106 VKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQ------------MYYTSSSI 153
+ + I + + D + VG++T D +K + M T+S I
Sbjct: 23 LNDIAKVMTEKNIGSVIVVD--GNKPVGIITERDIVKAIGKGKSLETKAEEFM--TASLI 78
Query: 154 TMEE---LEE-HKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFL 197
T+ E + L + + I LPV+D+ GN+ I++ + I R +
Sbjct: 79 TIREDSPITGALAL---MRQFNIRHLPVVDDKGNLKGIISIRDITRAI 123
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A
{Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Length = 133
Score = 64.9 bits (159), Expect = 5e-13
Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 13/123 (10%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTL 283
V V E ++ A + E + ALP+ + L + D++ T
Sbjct: 17 GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATA 76
Query: 284 KE---ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDIL 340
E + + + ++ ++ + +V R+ V+ + ++G+++ +DI
Sbjct: 77 GELARDS---------IYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIA 126
Query: 341 VYL 343
+L
Sbjct: 127 RHL 129
Score = 47.5 bits (114), Expect = 5e-07
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 13/110 (11%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
+ ++ I LP+ + + +LT + I+ K G ++
Sbjct: 34 MREHDIGALPICGDDDRLHGMLTDRDIVI----------KGLAAGLDPNTATAGELARDS 83
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274
+ V SI L E +V +P+ E LV I + D+ E
Sbjct: 84 IYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARHLPEH 132
Score = 36.4 bits (85), Expect = 0.004
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSD-DDIGVDETSSDS 361
ETL + + ++ L + +DD + G+L+ DI++ + D + E + DS
Sbjct: 24 HETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDS 83
Query: 362 EVPVDPD 368
VD +
Sbjct: 84 IYYVDAN 90
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2,
protein structure initiative; HET: NAD; 1.60A
{Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Length = 135
Score = 63.8 bits (156), Expect = 1e-12
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 212 KTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLA 271
KT++ L V + + S+ +A++K + AL + + LV I + D +
Sbjct: 6 KTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKS 64
Query: 272 AEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVL 331
D +KE + V L+ T M I V L V+D D V+
Sbjct: 65 YLLDKPVKDTQVKEIMTRQ------VAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVI 117
Query: 332 GVLSLSDILVYLV 344
G+LS+ D++ +
Sbjct: 118 GLLSIGDLVKDAI 130
Score = 30.3 bits (69), Expect = 0.55
Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSD-DDIGVDETSSDS 361
D+++F M+++ + L+V+ D+ ++G+L+ D L D V E +
Sbjct: 25 DDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQ 83
Query: 362 EVPVDPD 368
VD +
Sbjct: 84 VAYVDLN 90
Score = 29.5 bits (67), Expect = 0.89
Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 16/105 (15%)
Query: 106 VKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFI-KILQMYYTSSSITMEELEEHKLE 164
V A + + I A + ++ VG+LT DF K + ++E+ ++
Sbjct: 28 VFNAMQKMAADNIGALLVMK--DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVA 85
Query: 165 T------------NLIDYKIHRLPVIDEMGNVLYILTHKRILRFL 197
+ + ++ LPV+D+ G V+ +L+ +++
Sbjct: 86 YVDLNNTNEDCMALITEMRVRHLPVLDD-GKVIGLLSIGDLVKDA 129
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for
structural genomics, secsg; 2.59A {Methanocaldococcus
jannaschii dsm 2661ORGANISM_TAXID}
Length = 138
Score = 63.4 bits (155), Expect = 2e-12
Identities = 29/146 (19%), Positives = 67/146 (45%), Gaps = 30/146 (20%)
Query: 210 LNKTLRDLKIGTY--ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDV 267
+ TL+++K+ +NV T ++ A K L+ ++S+LP+ D E ++ I D+
Sbjct: 1 MIDTLKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDI 60
Query: 268 INLAAEKTYTNLDVTLKE--------ANEHKTDWFEGVEKCLLDETLFTVMERIVRAE-- 317
Y L+ T+ + +E D ++ ++++ +
Sbjct: 61 GYNLIRDKY-TLETTIGDVMTKDVITIHE--------------DASILEAIKKMDISGKK 105
Query: 318 ---VHRLVVVDEDDHVLGVLSLSDIL 340
+++L VVD+++ ++G++S DI+
Sbjct: 106 EEIINQLPVVDKNNKLVGIISDGDII 131
Score = 53.8 bits (130), Expect = 3e-09
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
++ YKI LPVID+ V+ I+T D+ +K + IG ++
Sbjct: 34 MLKYKISSLPVIDDENKVIGIVTTT-----------DIGYNLIRDKYTLETTIGDVMTKD 82
Query: 225 VETVAEETSIIHALRKFL-----ERRVSALPMTDSEGHLVDIFAKFDVINLAAE 273
V T+ E+ SI+ A++K E ++ LP+ D LV I + D+I ++
Sbjct: 83 VITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISK 136
Score = 38.8 bits (91), Expect = 5e-04
Identities = 20/109 (18%), Positives = 45/109 (41%), Gaps = 18/109 (16%)
Query: 106 VKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSI------------ 153
V +AF ++ I + P+ D + +G++T TD L +
Sbjct: 27 VVEAFEKMLKYKISSLPVIDD-ENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMTKDVIT 85
Query: 154 -----TMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFL 197
++ E + + + I++LPV+D+ ++ I++ I+R +
Sbjct: 86 IHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTI 134
Score = 36.8 bits (86), Expect = 0.003
Identities = 10/54 (18%), Positives = 30/54 (55%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDE 356
E + E++++ ++ L V+D+++ V+G+++ +DI L+ + + +
Sbjct: 24 HEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGD 77
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Length = 156
Score = 62.8 bits (153), Expect = 4e-12
Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 6/136 (4%)
Query: 208 SFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDV 267
+FL +N+ + + + HA + + +P+ E V D+
Sbjct: 11 TFLLGQEETFLT-PAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDI 69
Query: 268 INLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDED 327
+ E + + + V D T+ V+ ++V + L VVD +
Sbjct: 70 MAYQMEHDLSQEIMADTDIVHMTKTDVAVVSP---DFTITEVLHKLV--DESFLPVVDAE 124
Query: 328 DHVLGVLSLSDILVYL 343
G+++ IL +
Sbjct: 125 GIFQGIITRKSILKAV 140
Score = 53.1 bits (128), Expect = 8e-09
Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
L R+PV+ + + + + I+ + + + + D I +
Sbjct: 43 LSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQM-------EHDLSQEIMADTDIVHMTKTD 95
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVI 268
V V+ + +I L K ++ LP+ D+EG I + ++
Sbjct: 96 VAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSIL 137
Score = 40.4 bits (95), Expect = 2e-04
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 23/136 (16%)
Query: 89 DLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYY 148
+ + L V A L P+ +Q+VG + + D + Y
Sbjct: 19 TFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD-EKQFVGTIGLRDIMA----YQ 73
Query: 149 TSSSITMEELEEHKLE-------------TNLID-----YKIHRLPVIDEMGNVLYILTH 190
++ E + + + + + LPV+D G I+T
Sbjct: 74 MEHDLSQEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDESFLPVVDAEGIFQGIITR 133
Query: 191 KRILRFLFLYINDLPK 206
K IL+ + ++D K
Sbjct: 134 KSILKAVNALLHDFSK 149
Score = 36.9 bits (86), Expect = 0.003
Identities = 10/58 (17%), Positives = 20/58 (34%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSD 360
+ + R+ VV ++ +G + L DI+ Y + +I D
Sbjct: 33 THNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVH 90
>4fry_A Putative signal-transduction protein with CBS DOM; CBS
domain,ssgcid, structural genomics, niaid; HET: NAD AMP;
2.10A {Burkholderia ambifaria}
Length = 157
Score = 62.3 bits (152), Expect = 5e-12
Identities = 22/141 (15%), Positives = 56/141 (39%), Gaps = 11/141 (7%)
Query: 207 PSFLNKTLRDL---KIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFA 263
P ++ T+ + K + + TV + + A++ E+ + AL + D + I
Sbjct: 2 PGSMSTTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVT 60
Query: 264 KFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVV 323
+ D + ++ ++E K V ++ M + + L V
Sbjct: 61 ERDYARKVVLQERSSKATRVEEIMTAK------VRYVEPSQSTDECMALMTEHRMRHLPV 114
Query: 324 VDEDDHVLGVLSLSDILVYLV 344
+D ++G++S+ D++ ++
Sbjct: 115 LD-GGKLIGLISIGDLVKSVI 134
Score = 32.2 bits (74), Expect = 0.12
Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 22/131 (16%)
Query: 106 VKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFI-KILQMYYTSSSITMEELEEHKLE 164
V A + GI A + D G++T D+ K++ +S + +EE+ K+
Sbjct: 32 VYDAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQERSSKATRVEEIMTAKVR 89
Query: 165 T------------NLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNK 212
+ ++++ LPV+D G ++ +++ +++ + + F
Sbjct: 90 YVEPSQSTDECMALMTEHRMRHLPVLDG-GKLIGLISIGDLVKSV------IADQQFTIS 142
Query: 213 TLRDLKIGTYE 223
L GT
Sbjct: 143 QLEHYIHGTPS 153
Score = 29.2 bits (66), Expect = 1.4
Identities = 9/49 (18%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDD 351
++ ++ ++ + + L+VVD D + G+++ D +VL+
Sbjct: 29 NDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQERSSK 76
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein
structure initiative; 1.40A {Methanothermobacter
thermautotrophicusdelta H} SCOP: d.37.1.1
Length = 125
Score = 60.6 bits (148), Expect = 1e-11
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Query: 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVT 282
+V+T+ S+ LR ++E + + EG V I +DV+ AE +V
Sbjct: 9 TDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDDLA-EVK 66
Query: 283 LKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVY 342
+ E + T+ E++V+ V RL+V EDD ++GV+S +DIL
Sbjct: 67 VW---EVMERDLVTISP---RATIKEAAEKMVKNVVWRLLVE-EDDEIIGVISATDILRA 119
Query: 343 LVLKP 347
+ K
Sbjct: 120 KMAKR 124
Score = 49.0 bits (118), Expect = 1e-07
Identities = 17/112 (15%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
++ V+ E G + I+T +L + L ++K+ +
Sbjct: 27 YVENAKGSSVVVKE-GVRVGIVTTWDVLEAIAE-----------GDDLAEVKVWEVMERD 74
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTY 276
+ T++ +I A K ++ V L + + + ++ + + D++ K Y
Sbjct: 75 LVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAKMAKRY 125
Score = 34.0 bits (79), Expect = 0.021
Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 15/116 (12%)
Query: 94 SAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSI 153
+ D ++ V N ++ + VG++T D ++ + + +
Sbjct: 8 VTDVDTIDITASLEDVLRNYVENAKGSSVVVK--EGVRVGIVTTWDVLEAIAEGDDLAEV 65
Query: 154 TMEELEEHKLET------------NLIDYKIHRLPVIDEMGNVLYILTHKRILRFL 197
+ E+ E L T ++ + RL V ++ ++ +++ ILR
Sbjct: 66 KVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAK 120
Score = 32.9 bits (76), Expect = 0.055
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 297 VEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDE 356
V+ + +L V+ V VVV + +G+++ D+L + ++ V E
Sbjct: 11 VDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDDLAEVKVWE 69
Query: 357 TSSDSEVPVDPD 368
V + P
Sbjct: 70 VMERDLVTISPR 81
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function,
center for structural genomics of infectious diseases;
1.80A {Bacillus anthracis}
Length = 150
Score = 60.9 bits (148), Expect = 2e-11
Identities = 27/145 (18%), Positives = 59/145 (40%), Gaps = 13/145 (8%)
Query: 203 DLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIF 262
+PK F ++DL I + E V V + HAL ++ SA+P+ D L +
Sbjct: 6 SIPKDEFQQIFVKDLMI-SSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLI 64
Query: 263 AKFDVINLAAEKTYTNL----DVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEV 318
+ +++ ++ +++ + + L+++ +E + +
Sbjct: 65 STAMILDGILGLERIEFERLEEMKVEQVMKQD------IPVLKLEDSFAKALEMTI--DH 116
Query: 319 HRLVVVDEDDHVLGVLSLSDILVYL 343
+ V+ED + G+L+ IL L
Sbjct: 117 PFICAVNEDGYFEGILTRRAILKLL 141
Score = 48.2 bits (115), Expect = 5e-07
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 26/138 (18%)
Query: 89 DLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYY 148
DL+ +S K+ ++ A LV +G A P+ D + G+++ IL
Sbjct: 19 DLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAM---ILDGIL 74
Query: 149 TSSSITMEELEEHKLET--------------------NLIDYKIHRLPVIDEMGNVLYIL 188
I E LEE K+E ID+ + ++E G IL
Sbjct: 75 GLERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGIL 132
Query: 189 THKRILRFLFLYINDLPK 206
T + IL+ L + +
Sbjct: 133 TRRAILKLLNKKVRQHNR 150
Score = 36.6 bits (85), Expect = 0.005
Identities = 9/55 (16%), Positives = 24/55 (43%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDET 357
L + +V++ + V+D + G++S + IL ++ + ++E
Sbjct: 33 GNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEM 87
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS)
domain, structural genomics, protein structure
initiative, PSI; 2.10A {Bacillus subtilis} SCOP:
d.37.1.1
Length = 159
Score = 60.2 bits (146), Expect = 3e-11
Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 9/138 (6%)
Query: 208 SFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDV 267
L T+ I + V V ++ HAL + +A+P+ D L + +
Sbjct: 10 QLLEATVGQFMIEA-DKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMI 68
Query: 268 INLAAEKTYTNLDVTLKEANEH--KTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVD 325
+N + + E TD + + +++ + ++ + V +
Sbjct: 69 MNSIFGLERIEFEKLDQITVEEVMLTD----IPRLHINDPIMKGFGMVI--NNGFVCVEN 122
Query: 326 EDDHVLGVLSLSDILVYL 343
++ G+ + +L L
Sbjct: 123 DEQVFEGIFTRRVVLKEL 140
Score = 41.7 bits (98), Expect = 8e-05
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 23/135 (17%)
Query: 90 LIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYT 149
+I K+ ++ A L G A P+ D + G++ I+ +
Sbjct: 20 MIEAD-KVAHVQVGNNLEHALLVLTKTGYTAIPVLDP-SYRLHGLIGTNM---IMNSIFG 74
Query: 150 SSSITMEELEEHKLE-------------TNLID-----YKIHRLPVIDEMGNVLYILTHK 191
I E+L++ +E ++ + V ++ I T +
Sbjct: 75 LERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGFVCVENDEQVFEGIFTRR 134
Query: 192 RILRFLFLYINDLPK 206
+L+ L +I L K
Sbjct: 135 VVLKELNKHIRSLNK 149
Score = 36.7 bits (85), Expect = 0.004
Identities = 6/55 (10%), Positives = 20/55 (36%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDET 357
L + + + + V+D + G++ + I+ + + +D+
Sbjct: 32 GNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQI 86
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central
glycolytic G regulator, transcription; 1.95A {Bacillus
subtilis} PDB: 3fwr_A* 3fws_A*
Length = 159
Score = 59.3 bits (144), Expect = 7e-11
Identities = 18/129 (13%), Positives = 53/129 (41%), Gaps = 8/129 (6%)
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286
+ E S+ A+ V L + D + LV + ++ D++ + + V +
Sbjct: 28 VIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQ-ELTSVPVHII 86
Query: 287 NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDD---HVLGVLSLSDILVYL 343
+ + C ++ + + + ++ ++ L V+ + D V+G ++ +++ L
Sbjct: 87 MTRMPN----ITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKIL 142
Query: 344 VLKPSDDDI 352
V ++ +
Sbjct: 143 VSLSENEIL 151
Score = 50.8 bits (122), Expect = 7e-08
Identities = 18/130 (13%), Positives = 48/130 (36%), Gaps = 20/130 (15%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY---- 222
+ + L V+D ++ +L+ K DL + S + L + +
Sbjct: 42 MFLEDVGTLFVVDRDAVLVGVLSRK-----------DLLRASIGQQELTSVPVHIIMTRM 90
Query: 223 ENVETVAEETSIIHALRKFLERRVSALPMTDSEG---HLVDIFAKFDVINLAAEKTYTNL 279
N+ E ++ + +E+++ ALP+ ++ K ++ + +
Sbjct: 91 PNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS--LSEN 148
Query: 280 DVTLKEANEH 289
++ L+ + H
Sbjct: 149 EILLQHHHHH 158
Score = 36.9 bits (86), Expect = 0.004
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDE--TSSD 360
+ +++ + + +V L VVD D ++GVLS D+L + + + V T
Sbjct: 32 NVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMTRMP 91
Query: 361 SEVPVDPD 368
+ +
Sbjct: 92 NITVCRRE 99
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima}
SCOP: d.37.1.1
Length = 213
Score = 59.8 bits (145), Expect = 1e-10
Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 21/134 (15%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKT----YTNL 279
+ V E ++ L + + + + + D EGH + K D+++L + + +
Sbjct: 22 DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSVFNKVSLP 81
Query: 280 DVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDI 339
D + E ++ + + + + L VVDE+ + G +SL D
Sbjct: 82 DFFVHE-----------------EDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDF 124
Query: 340 LVYLVLKPSDDDIG 353
L L+ + D G
Sbjct: 125 LEALIEALAMDVPG 138
Score = 49.7 bits (119), Expect = 3e-07
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 15/107 (14%)
Query: 169 DYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETV 228
Y+ + V D G+ ++ + +L L+ ++ + V
Sbjct: 41 QYQTNECIVKDREGHFRGVVNKEDLLDLD------------LDSSVFNK---VSLPDFFV 85
Query: 229 AEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKT 275
EE +I HAL FLE + LP+ D E L + D + E
Sbjct: 86 HEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL 132
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national
project on protein structural functional analyses; 2.50A
{Geobacillus kaustophilus}
Length = 157
Score = 58.6 bits (142), Expect = 1e-10
Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 7/137 (5%)
Query: 208 SFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDV 267
F+ T++ I + V V + HAL + SA+P+ D+ L + + +
Sbjct: 7 EFMQMTVKPFLIPA-DKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMM 65
Query: 268 INLAAEKTYTNLDVTLK-EANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDE 326
++ + + E + D++L + IV + V ++
Sbjct: 66 MDAILGLERIEFERLETMKVEEVMNRNIPRLRL---DDSLMKAVGLIVNH--PFVCVEND 120
Query: 327 DDHVLGVLSLSDILVYL 343
D + G+ + ++L L
Sbjct: 121 DGYFAGIFTRREVLKQL 137
Score = 53.6 bits (129), Expect = 8e-09
Identities = 14/104 (13%), Positives = 41/104 (39%), Gaps = 10/104 (9%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
L +PV+D + +++ ++ + L + L +K+ N
Sbjct: 39 LTKTGYSAIPVLDTSYKLHGLISMTMMMDAI------LGLERIEFERLETMKVEEVMNRN 92
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVI 268
+ + + S++ A+ + + + + +G+ IF + +V+
Sbjct: 93 IPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVL 134
Score = 36.6 bits (85), Expect = 0.004
Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 26/138 (18%)
Query: 89 DLIPTSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYY 148
+ + K+ + A L G A P+ D+ + G++++T ++
Sbjct: 15 PFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT-SYKLHGLISMTM---MMDAIL 70
Query: 149 TSSSITMEELEEHKLE--------------------TNLIDYKIHRLPVIDEMGNVLYIL 188
I E LE K+E ++++ + V ++ G I
Sbjct: 71 GLERIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIF 128
Query: 189 THKRILRFLFLYINDLPK 206
T + +L+ L ++
Sbjct: 129 TRREVLKQLNKQLHRPNG 146
Score = 36.3 bits (84), Expect = 0.007
Identities = 5/48 (10%), Positives = 20/48 (41%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDD 350
L + + + + V+D + G++S++ ++ ++ +
Sbjct: 29 GNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIE 76
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Vibrio cholerae} SCOP: d.37.1.1
Length = 160
Score = 57.3 bits (139), Expect = 3e-10
Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 6/124 (4%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
+ I +P++D +L I++ + +L + L + + + + + +
Sbjct: 31 MEALDIRHVPIVDANKKLLGIVSQRDLLAAQE---SSLQRSAQGDSLAFETPLFEVMHTD 87
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLK 284
V +VA + + + + ++ LP+ + LV I D + +A +
Sbjct: 88 VTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAINLLELQEESEPD 146
Query: 285 EANE 288
E +E
Sbjct: 147 ELDE 150
Score = 53.5 bits (129), Expect = 7e-09
Identities = 22/158 (13%), Positives = 51/158 (32%), Gaps = 31/158 (19%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLV------DI-FAKFDVINLAAEKTY 276
+ T+ ++ A + +P+ D+ L+ D+ A+ + +A+
Sbjct: 14 HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDS 73
Query: 277 TNLDVTLKE--------ANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDD 328
+ L E L + + ++ L VV D
Sbjct: 74 LAFETPLFEVMHTDVTSVAP--------------QAGLKESAIYMQKHKIGCLPVVA-KD 118
Query: 329 HVLGVLSLSDILVYLV-LKPSDDDIGVDETSSDSEVPV 365
++G+++ SD + + L ++ DE + E
Sbjct: 119 VLVGIITDSDFVTIAINLLELQEESEPDELDEEQEGHH 156
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine,
conformational change, unknown function; HET: SAM; 1.60A
{Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A*
Length = 122
Score = 56.0 bits (136), Expect = 5e-10
Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 25/124 (20%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYT------ 277
T SI+ A + ++ ++ LP+ D G LV I +D+ A+ T
Sbjct: 10 PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIEEIMT 69
Query: 278 -NLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSL 336
N+ +T E DE + V ++ + + + VVD+ V+G+++
Sbjct: 70 RNV-ITAHE-----------------DEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTS 111
Query: 337 SDIL 340
DI
Sbjct: 112 EDIS 115
Score = 53.7 bits (130), Expect = 3e-09
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 17/110 (15%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--EN 224
LI + I+ LP++DE G ++ I+T I + L I N
Sbjct: 27 LIKHNINHLPIVDEHGKLVGIITSWDIAKAL---------------AQNKKTIEEIMTRN 71
Query: 225 VETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274
V T E+ + H K + +S +P+ D +V I D+ L K
Sbjct: 72 VITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGGK 121
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics,
PSI-2, protein structure initiative; HET: EPE; 1.66A
{Chlorobium tepidum tls}
Length = 128
Score = 54.0 bits (130), Expect = 3e-09
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 9/117 (7%)
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286
S A R+ + P+ D + + + L K + + L E
Sbjct: 17 VFTLGGSTADAARRLAASGCACAPVLD-GERYLGMVHLSRL--LEGRKGWPTVKEKLGEE 73
Query: 287 NEHKTDWFEGVEKCLLDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYL 343
E V E LF + + A+ + + DED GV+S IL +L
Sbjct: 74 ------LLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFL 124
Score = 48.6 bits (116), Expect = 2e-07
Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 15/117 (12%)
Query: 93 TSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSS 152
VF A L +G AP+ D ++Y+GM+ ++ ++ + + +
Sbjct: 11 AETDYPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRK-GWPTVK 67
Query: 153 ITMEELEEHKLET------------NLIDYKIHRLPVIDEMGNVLYILTHKRILRFL 197
+ E + + ++ K +P+ DE G +++ KRIL FL
Sbjct: 68 EKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFL 124
Score = 45.5 bits (108), Expect = 3e-06
Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 11/108 (10%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVE 226
L PV+D L ++ R+L + + L + + E V
Sbjct: 31 LAASGCACAPVLDG-ERYLGMVHLSRLLE-------GRKGWPTVKEKLGEELL---ETVR 79
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274
+ + L + S +P+ D +G + ++ ++ AE+
Sbjct: 80 SYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAER 127
Score = 33.9 bits (78), Expect = 0.024
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSE 362
+ R+ + V+D + LG++ LS +L P + E ++
Sbjct: 21 GGSTADAARRLAASGCACAPVLD-GERYLGMVHLSRLLEGRKGWP-TVKEKLGEELLETV 78
Query: 363 VPVDPD 368
P
Sbjct: 79 RSYRPG 84
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 4e-08
Identities = 53/352 (15%), Positives = 110/352 (31%), Gaps = 104/352 (29%)
Query: 73 GGNQIFVKFF--------KFHKC-YDLIPTS---------------AKLVVFDTQLLVKK 108
NQ+F K+ K + +L P A V + V+
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK--VQC 178
Query: 109 AFFALVYNGIRAAPLWDSVHQQYVGMLTITDFIKILQMYYTSSSITMEELEEH----KLE 164
++ W ++ + +++LQ +H KL
Sbjct: 179 KMDFKIF--------WLNLKNCN----SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 165 TNLIDYKIHRLPVIDEMGNVLYILTH---KRILRFLFLYINDLPKPSFLN--KTL---RD 216
+ I ++ RL N L +L + + +F K L R
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN------------AFNLSCKILLTTRF 274
Query: 217 LKIGTYENVETVAEETSIIHA-----------LRKFLERRVSALPMTDSEGH--LVDIFA 263
++ + + T + H+ L K+L+ R LP + + I A
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 264 KF--DVIN-------LAAEKTYTNLDVTLK--EANEHKTDWF-------EGV---EK--C 300
+ D + + +K T ++ +L E E++ F
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILLS 393
Query: 301 LL-DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDD 351
L+ + + + + +V ++H+ +V++ +S+ I YL LK ++
Sbjct: 394 LIWFDVIKSDVMVVV-NKLHKYSLVEKQPK-ESTISIPSI--YLELKVKLEN 441
Score = 31.7 bits (71), Expect = 0.56
Identities = 39/271 (14%), Positives = 88/271 (32%), Gaps = 68/271 (25%)
Query: 164 ETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYE 223
ET Y+ ++L + + F + D+PK + + + I + +
Sbjct: 10 ETGEHQYQ---------YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-IMSKD 59
Query: 224 NVETV--------AEETSIIH-----ALRK---FL------ERRVSALPMTDSEGHL--- 258
V +++ ++ LR FL E+R ++
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 259 ---VDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDWFEGVEKC---------LLDETL 306
+FAK++V + + Y L L E K +GV L +
Sbjct: 120 YNDNQVFAKYNV---SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 307 FTVMERIVRAEVHRLVV--VDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVP 364
M+ ++ L + + + VL ++L L+ + + + SS+ ++
Sbjct: 177 QCKMDF----KIFWLNLKNCNSPETVL------EMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 365 VDPDLASSDDKVFEENEEPR-----DYVQNS 390
+ + + ++ + VQN+
Sbjct: 227 IH-SIQAELRRLLKSKPYENCLLVLLNVQNA 256
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase
(CBS) domains containing protein, transport protein;
1.60A {Homo sapiens}
Length = 164
Score = 50.8 bits (121), Expect = 8e-08
Identities = 16/122 (13%), Positives = 40/122 (32%), Gaps = 6/122 (4%)
Query: 224 NVETVAEETSIIHALRKFLERRVSALPMTDSE--GHLVDIFAKFDVINLAAEKTYTNLDV 281
++ T+A++T + ++ V+ P+ +S LV I + ++ + +
Sbjct: 22 SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPG 81
Query: 282 TLKEANEHKTDWFEGVEKCL---LDETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSD 338
+ + L + TL + L V +G +S +
Sbjct: 82 HQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFV-TSRGRAVGCVSWVE 140
Query: 339 IL 340
+
Sbjct: 141 MK 142
Score = 27.7 bits (61), Expect = 4.8
Identities = 13/127 (10%), Positives = 36/127 (28%), Gaps = 24/127 (18%)
Query: 94 SAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQY-VGMLTITDFIKILQMYYTSSS 152
+ + +++ + + PL +S Q VG++ ++ LQ S +
Sbjct: 20 NHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRA 79
Query: 153 ITMEELEEHKLETN----------------------LIDYKIHRLPVIDEMGNVLYILTH 190
++ + L + L V G + ++
Sbjct: 80 PGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSR-GRAVGCVSW 138
Query: 191 KRILRFL 197
+ + +
Sbjct: 139 VEMKKAI 145
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 3e-07
Identities = 70/467 (14%), Positives = 130/467 (27%), Gaps = 183/467 (39%)
Query: 4 ESALLRRSSLDPDRRRLSL----GTVN----------SSYRGS-SDLLDLHHAVNAAVLF 48
SAL R + + + + +++ G + +Y DL+ A L
Sbjct: 142 NSALFR-AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS----AETLS 196
Query: 49 RDSRGLPVATSFLDK-IDFAD-LEKD-------------------GGNQIFVKFFKFHKC 87
R A + ++ + LE G Q + K
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ-LAHYVVTAKL 255
Query: 88 YDLIP------TSAKLVVFDTQLLVKKAFFALVYNGIRAAPLWDSVHQQYVGMLTITDFI 141
P +Q LV A W+S +T+ FI
Sbjct: 256 LGFTPGELRSYLKGATGH--SQGLVTAVAIA-------ETDSWESFFVSVRKAITVLFFI 306
Query: 142 KI-LQMYYTSSSIT-----------------M--------EELEEHKLETNLIDYKIHRL 175
+ Y ++S+ M E+++++ +TN L
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN------SHL 360
Query: 176 PVIDEMGNVLYI-LTHKRILRFLFLYINDLPKPSF-----------LNKTLRDLKIGTYE 223
P G + I L +N K + LN TLR K
Sbjct: 361 PA----GKQVEISL------------VNG-AK-NLVVSGPPQSLYGLNLTLRKAK----- 397
Query: 224 NVETVAEETSIIHALRK------FLERRVSALP-----MTDSEGHLVDIFAKFDVINLAA 272
+ +++ I + RK FL V++ P + + + K + ++ A
Sbjct: 398 -APSGLDQSRIPFSERKLKFSNRFL--PVAS-PFHSHLLVPASDLINKDLVKNN-VSFNA 452
Query: 273 EK-------TYTNLDVTLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRAEVH-RLVVV 324
+ T+ D+ + + + E + + I+R V
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGS--------------ISERIV---DCIIRLPVKWETTTQ 495
Query: 325 DEDDHVL--------GVLSLSD----------ILVYLVLKPSDDDIG 353
+ H+L G+ L+ I+ + DDD G
Sbjct: 496 FKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 50.8 bits (121), Expect = 6e-07
Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 59/164 (35%)
Query: 283 LKEANEHKTDW-FEGVEKCLLDETLFT-----VME----RIVRAEVHRLVVVDEDD---- 328
KE NEH T + F EK LL T FT +ME ++++ ++ D
Sbjct: 1707 FKEINEHSTSYTFRS-EKGLLSATQFTQPALTLMEKAAFEDLKSK----GLIPADATFAG 1761
Query: 329 HVLG----------VLSLSDILVYLVLK--------PSDDDIGVDETSSDSEVPVDPD-- 368
H LG V+S+ LV +V D++G S+ + ++P
Sbjct: 1762 HSLGEYAALASLADVMSIES-LVEVVFYRGMTMQVAVPRDELG---RSNYGMIAINPGRV 1817
Query: 369 LASSDDKVFEE-----NEEPRDYVQ----NSCWGEVPVSDSQII 403
AS + + + V+ N V + Q +
Sbjct: 1818 AASFSQEALQYVVERVGKRTGWLVEIVNYN-------VENQQYV 1854
Score = 40.0 bits (93), Expect = 0.001
Identities = 40/223 (17%), Positives = 71/223 (31%), Gaps = 81/223 (36%)
Query: 1 MTRESALLRRSSLDPDRRRLSLGTVNSSYRGSSDLLDLHH-------AVNAAVLFRD--S 51
M E+ + + + + ++ + + ++R LL + A F D S
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA-AFEDLKS 1749
Query: 52 RGL-PVATSF----------L----DKIDFADL---------------EKDGGNQIFVKF 81
+GL P +F L D + L +D
Sbjct: 1750 KGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG------ 1803
Query: 82 FKFHKCYDLI---PTSAKLVVFDTQL--LVKKAFFA---LV----YNGIRAAPLWDSVHQ 129
Y +I P L +V++ LV YN +Q
Sbjct: 1804 ---RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYN----VE-----NQ 1851
Query: 130 QYV--G------MLT-ITDFIKI--LQMYYTSSSITMEELEEH 161
QYV G +T + +FIK+ + + S+++EE+E H
Sbjct: 1852 QYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 38.1 bits (88), Expect = 0.005
Identities = 71/404 (17%), Positives = 122/404 (30%), Gaps = 125/404 (30%)
Query: 18 RRLSL--GTVNSSYRGSSDLLDLHHAVNAAVLFRDS--RGLPVATSFLDKIDFADLEKDG 73
R L+L G++ + A+ L ++ + LP T AD E
Sbjct: 7 RPLTLSHGSLEHVLLVPTASF-----FIASQL-QEQFNKILPEPTEGFA----ADDEPTT 56
Query: 74 GNQIFVKFFKFHKCYDLIPTSAKLVVFDTQL-LVKKAF---FALVYNGI--RAAPLWDSV 127
++ KF + L+ S K+ FD L L F + L N I AA L
Sbjct: 57 PAELVGKFLGY--VSSLVEPS-KVGQFDQVLNLCLTEFENCY-LEGNDIHALAAKLLQEN 112
Query: 128 HQQYVGMLTITDFIKILQMYYTSSSIT--------------------------------- 154
T+ ++++ Y T+ +
Sbjct: 113 DT------TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 155 ---MEELEEHKL-ETNLIDYKIHRLPVIDEMGNVLYILTHKR------------ILRFLF 198
EEL + L +T Y + +I L L IL +L
Sbjct: 167 DDYFEELRD--LYQT----YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL- 219
Query: 199 LYINDLPKPSFLNK--------TLRDLKIGTYENV-----ETVAEETSIIHALRKFLERR 245
++ P +L + +++ Y T E S + +
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGV--IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 246 VSALP--MTDSEGHLVDIFAK-----FDVINLAAEKTYTNLDVT---LKEANEHKTDWFE 295
V+A+ TDS K F I + + Y N + L+++ E+ E
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLF-FIGVRCYEAYPNTSLPPSILEDSLENN----E 332
Query: 296 GVEKCLL---DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSL 336
GV +L + T V + + + H + V +SL
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSH----LPAGKQV--EISL 370
Score = 38.1 bits (88), Expect = 0.006
Identities = 38/247 (15%), Positives = 67/247 (27%), Gaps = 83/247 (33%)
Query: 187 ILTHKRILRFLFLYINDLPKPSFLNKT-LRD-----LKIGTYENVETVAEETSIIHALRK 240
L+H + + L +P SF + L++ L T E E T+ + K
Sbjct: 10 TLSHGSL-EHVLL----VPTASFFIASQLQEQFNKILPEPT-EGFAADDEPTTPAELVGK 63
Query: 241 FL---ERRVSALPMTDSEGHLVDIFAKF--------DVINLAAE---------------- 273
FL V + + L +F D+ LAA+
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
Query: 274 KTYTNLDVTLKE--ANEHKTDWFEGV-----------------EKCLLDE--TLFTVMER 312
K Y + K + + F V + +E L+
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-FEELRDLYQTYHV 182
Query: 313 IVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDI----GVDETS---SDSEVPV 365
+V + ++ L L+ D + G++ + S P
Sbjct: 183 LVGDLIKF---------------SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 366 DPDLASS 372
L S
Sbjct: 228 KDYLLSI 234
Score = 29.2 bits (65), Expect = 2.9
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 44/96 (45%)
Query: 334 LSLSD------ILV-------YLVLK---------PSDDDIGVDETSSDSEV-------- 363
L+LS +LV L+ P++ DE ++ +E+
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 364 --PVDPDLASSDDKV-------FEENEEPRDYVQNS 390
V+P D+V FE Y++ +
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFE-----NCYLEGN 99
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II,
CBS domain, bateman domain, AP4A, diadenosine
polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium
perfringens} PDB: 3l31_A*
Length = 245
Score = 43.8 bits (102), Expect = 4e-05
Identities = 16/124 (12%), Positives = 48/124 (38%), Gaps = 1/124 (0%)
Query: 222 YENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDV 281
+ + +A E S+ A ++ + ++P+ D HL+ + + ++ + +N+
Sbjct: 14 MDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILA 73
Query: 282 TLKEANEHKTDWFEGVEKCLLDETLFTVMERIVRA-EVHRLVVVDEDDHVLGVLSLSDIL 340
+ ++ D + + +E + +V A + L + + ++I
Sbjct: 74 KSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQ 133
Query: 341 VYLV 344
L+
Sbjct: 134 AELI 137
Score = 41.8 bits (97), Expect = 2e-04
Identities = 26/207 (12%), Positives = 59/207 (28%), Gaps = 33/207 (15%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIG------ 220
+ D + +PV D ++L +L+ I + L
Sbjct: 33 MRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNILDTLSAEAQN 92
Query: 221 -----------------TYENVETVAEETSII------HALRKFLERRVSALPMTDSEGH 257
E+++ E I + +E +VS L +T
Sbjct: 93 INEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTP 152
Query: 258 LVDIFAKFDVINLAAEKTYTNLDVTLKEANEHKTDW----FEGVEKCLLDETLFTVMERI 313
+I N+ T + + + + + D+ + V +
Sbjct: 153 SKEIIELAKKNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTM 212
Query: 314 VRAEVHRLVVVDEDDHVLGVLSLSDIL 340
V+DE++ V+G ++ ++
Sbjct: 213 SETRYSNYPVIDENNKVVGSIARFHLI 239
Score = 33.0 bits (74), Expect = 0.12
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 221 TYENVETVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEK 274
T +N+ V+ + + E R S P+ D +V A+F +I+ +K
Sbjct: 192 TKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTHKKK 245
Score = 27.2 bits (59), Expect = 8.6
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRF 196
+ + + PVIDE V+ + ++
Sbjct: 212 MSETRYSNYPVIDENNKVVGSIARFHLIST 241
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.18A {Thermotoga maritima} SCOP:
c.1.5.1
Length = 494
Score = 43.2 bits (103), Expect = 1e-04
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 170 YKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVA 229
YKI LPV+DE G ++ +LT+ R +RF +L K T R E +
Sbjct: 124 YKIGGLPVVDEEGRLVGLLTN-RDVRF----EKNLSKKIKDLMTPR-------EKLIVAP 171
Query: 230 EETSIIHALRKFLERRVSALPMTDSEGHLV 259
+ S+ A + R+ LP+ + LV
Sbjct: 172 PDISLEKAKEILHQHRIEKLPLVSKDNKLV 201
Score = 34.0 bits (79), Expect = 0.079
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 28/122 (22%)
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286
TV + ++ A+ E ++ LP+ D EG LV + DV + NL +K+
Sbjct: 107 TVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV------RFEKNLSKKIKDL 160
Query: 287 NEHKTDWFEGVEKCLLDETLFTVMERIVRAEV------HR---LVVVDEDDHVLGVLSLS 337
+ E L I + HR L +V +D+ ++G++++
Sbjct: 161 MTPR-------------EKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIK 207
Query: 338 DI 339
DI
Sbjct: 208 DI 209
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio
cholerae o1 biovar el tor}
Length = 496
Score = 42.5 bits (101), Expect = 2e-04
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 170 YKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVA 229
+ PV+ E ++ I+T R +RF + DL K T + E + TV
Sbjct: 118 HGFAGFPVVTENNELVGIITG-RDVRF----VTDLTKSVAAVMTPK-------ERLATVK 165
Query: 230 EETSIIHALRKFLERRVSALPMTDSEGHLV 259
E + K + RV + + + E L
Sbjct: 166 EGATGAEVQEKMHKARVEKILVVNDEFQLK 195
Score = 33.2 bits (77), Expect = 0.14
Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 28/122 (22%)
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDVTLKEA 286
TV E +I + + P+ LV I DV + T+L ++
Sbjct: 101 TVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDV------RFVTDLTKSVAAV 154
Query: 287 NEHKTDWFEGVEKCLLDETLFTVMERIVRAEV------HR---LVVVDEDDHVLGVLSLS 337
K E L TV E AEV R ++VV+++ + G+++
Sbjct: 155 MTPK-------------ERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAK 201
Query: 338 DI 339
D
Sbjct: 202 DF 203
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
SCOP: c.1.5.1 d.37.1.1
Length = 491
Score = 41.7 bits (99), Expect = 3e-04
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 170 YKIHRLPVIDEMGN--VLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVET 227
Y+I +P+++ + N ++ I+T+ R +RF I+D P + + T E++ T
Sbjct: 119 YRISGVPIVETLANRKLVGIITN-RDMRF----ISDYNAP------ISE--HMTSEHLVT 165
Query: 228 VAEETSIIHALRKFLERRVSALPMTDSEGHLV 259
A T + A R E R+ LP+ D+ G L
Sbjct: 166 AAVGTDLETAERILHEHRIEKLPLVDNSGRLS 197
Score = 31.7 bits (73), Expect = 0.51
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 31/124 (25%)
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDS--EGHLVDIFAKFDVINLAAEKTYTNLDVTLK 284
+ E + A R+S +P+ ++ LV I TN D+
Sbjct: 102 FLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGII--------------TNRDMRFI 147
Query: 285 EANEHKTDWFEGVEKCLLDETLFTVMERIVRAEV------HR---LVVVDEDDHVLGVLS 335
+D+ + + + E L T HR L +VD + G+++
Sbjct: 148 ------SDYNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLIT 201
Query: 336 LSDI 339
+ DI
Sbjct: 202 IKDI 205
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid, TIM
barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus
anthracis} PDB: 3tsd_A* 3tsb_A*
Length = 511
Score = 41.3 bits (98), Expect = 4e-04
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 15/92 (16%)
Query: 170 YKIHRLPVID--EMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVET 227
Y+I +PV++ + ++ I+T+ R +RF I D + D + T E + T
Sbjct: 142 YRISGVPVVNNLDERKLVGIITN-RDMRF----IQDYSIK------ISD--VMTKEQLIT 188
Query: 228 VAEETSIIHALRKFLERRVSALPMTDSEGHLV 259
T++ A + + ++ LP+ D+ G L
Sbjct: 189 APVGTTLSEAEKILQKYKIEKLPLVDNNGVLQ 220
Score = 32.1 bits (74), Expect = 0.35
Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 31/124 (25%)
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDS--EGHLVDIFAKFDVINLAAEKTYTNLDVTLK 284
+ E + A + R+S +P+ ++ E LV I TN D+
Sbjct: 125 FLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGII--------------TNRDMRFI 170
Query: 285 EANEHKTDWFEGVEKCLLDETLFTVMERIVRAEV------HR---LVVVDEDDHVLGVLS 335
D+ + + E L T +E ++ L +VD + + G+++
Sbjct: 171 ------QDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLIT 224
Query: 336 LSDI 339
+ DI
Sbjct: 225 IKDI 228
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
pyrococcus horikoshii OT3, riken structural
genomics/PROT initiative, RSGI; HET: XMP; 2.10A
{Pyrococcus horikoshii} SCOP: c.1.5.1
Length = 486
Score = 37.9 bits (89), Expect = 0.006
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 21/92 (22%)
Query: 170 YKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTY--ENVET 227
+ I LPV+++ V+ I+T + + + + V T
Sbjct: 122 HGIDGLPVVED-EKVVGIITK-KDIAAR-----------------EGKLVKELMTKEVIT 162
Query: 228 VAEETSIIHALRKFLERRVSALPMTDSEGHLV 259
V E + AL+ +E R+ LP+ D G LV
Sbjct: 163 VPESIEVEEALKIMIENRIDRLPVVDERGKLV 194
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel,
oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus}
SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A*
1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Length = 503
Score = 37.5 bits (88), Expect = 0.006
Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 170 YKIHRLPVIDEM---GNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVE 226
+ + V D+ G +L ++T R + + D+ + + +
Sbjct: 126 TTHNTVAVTDDGTPHGVLLGLVTQ-RDYPI---------DLTQTETKVSDM-MTPFSKLV 174
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLV 259
T ++T + A + E++++ALP+ D + HL
Sbjct: 175 TAHQDTKLSEANKIIWEKKLNALPIIDDDQHLR 207
Score = 28.7 bits (65), Expect = 3.9
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 153 ITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRI 193
+ E + + + K++ LP+ID+ ++ YI+ K
Sbjct: 180 TKLSEANKI-----IWEKKLNALPIIDDDQHLRYIVFRKDY 215
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+
transporter, structural GE PSI-2, protein structure
initiative; 2.41A {Shewanella oneidensis mr-1}
Length = 205
Score = 35.2 bits (82), Expect = 0.019
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 9/69 (13%)
Query: 303 DETLFTVMERIVRAE---VHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSS 359
T+ R E L +VDE D LG + DI + + S
Sbjct: 70 KATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFK------HEPHEPLISLLS 123
Query: 360 DSEVPVDPD 368
+ + +
Sbjct: 124 EDSRALTAN 132
>3fio_A A cystathionine beta-synthase domain protein fused to A
Zn-ribbon-like domain; PF1953,APC40009,cystathionine
beta-synthase domain protein; 1.81A {Pyrococcus
furiosus} PDB: 3ghd_A
Length = 70
Score = 32.6 bits (75), Expect = 0.024
Identities = 1/36 (2%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSEGHLVDIF 262
V + ++ + + + + + ++ +
Sbjct: 4 VVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVV 38
Score = 26.8 bits (60), Expect = 3.2
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDDHVLGVLSLSDILVYLVLK 346
+T+ V + + R + VV++ D +LGV++ DIL +V K
Sbjct: 8 KDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAK 50
>2j9l_A Chloride channel protein 5; ION channel, ION transport,
voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP:
d.37.1.1 PDB: 2ja3_A*
Length = 185
Score = 33.7 bits (77), Expect = 0.052
Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 23/150 (15%)
Query: 148 YTSSSITMEELEEHKLETNLIDYKIHRLPVIDEMGN-----------VLYILTHKR---- 192
T S+T+E++E + + PV+ + ++ + + R
Sbjct: 29 LTQDSMTVEDVETI-----ISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQD 83
Query: 193 --ILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSALP 250
+ + + P L+ + TV + T + + F + +
Sbjct: 84 GVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCL 143
Query: 251 MTDSEGHLVDIFAKFDVINLAAEKTYTNLD 280
+T G L+ I K DV+ A+ + D
Sbjct: 144 VTH-NGRLLGIITKKDVLKHIAQMANQDPD 172
Score = 30.6 bits (69), Expect = 0.58
Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 18/135 (13%)
Query: 227 TVAEETSIIHALRKFLERRVSALPMTDSE--GHLVDIFAKFDVINL---AAEKTYTNLDV 281
+ ++ E S P+ S LV + D+I A +K +
Sbjct: 29 LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST 88
Query: 282 TLKEANEHKTDWFEGVEKCL-----LDETLFTVMERIVRAEVHRL--------VVVDEDD 328
++ EH L LD + FTV + V + +V +
Sbjct: 89 SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG 148
Query: 329 HVLGVLSLSDILVYL 343
+LG+++ D+L ++
Sbjct: 149 RLLGIITKKDVLKHI 163
Score = 28.7 bits (64), Expect = 2.4
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 167 LIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNKTLRDL 217
+ + V G +L I+T K +L+ + N P N+ L L
Sbjct: 134 FRKLGLRQCLVTHN-GRLLGIITKKDVLKHIAQMANQDPDSILFNEFLEVL 183
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics; HET: AMP; 2.00A {Salmonella
typhimurium}
Length = 127
Score = 32.0 bits (74), Expect = 0.12
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDED-DHVLGVLSLSDILVYLVLKPSDDDI 352
++TL ++ I+ + R V+ ED DH+ G+L D+L ++ +
Sbjct: 21 NQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSM 71
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
{Thermus thermophilus} PDB: 2yvx_A
Length = 473
Score = 33.4 bits (77), Expect = 0.12
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 318 VHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVPVDPD 368
++ + VVDE + GVLSL D++V +D V E + V V D
Sbjct: 191 IYYIYVVDEKGRLKGVLSLRDLIV------ADPRTRVAEIMNPKVVYVRTD 235
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P
structure initiative, nysgxrc; 2.16A {Enterococcus
faecalis} SCOP: a.118.26.1 d.37.1.1
Length = 286
Score = 33.0 bits (76), Expect = 0.14
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 317 EVHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVPVDPD 368
++ + VVD+++H++GV+SL D++V +DDD + + ++ + V
Sbjct: 172 TIYYVYVVDQENHLVGVISLRDLIV------NDDDTLIADILNERVISVHVG 217
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein;
2.30A {Thermus thermophilus} PDB: 2yvz_A
Length = 278
Score = 33.0 bits (76), Expect = 0.15
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 318 VHRLVVVDEDDHVLGVLSLSDILVYLVLKPSDDDIGVDETSSDSEVPVDPD 368
++ + VVDE + GVLSL D++V +D V E + V V D
Sbjct: 171 IYYIYVVDEKGRLKGVLSLRDLIV------ADPRTRVAEIMNPKVVYVRTD 215
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 33.1 bits (76), Expect = 0.17
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDEDD-HVLGVLSLSDILVYLVLKPSDDDIGVDETSSDS 361
D T+ + + + V +L VVD+DD VLGV+ ++ +V + +
Sbjct: 401 DATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKALNKR 460
Query: 362 EVPVDPDLASSD-DKVFEEN 380
+ ++ +V E +
Sbjct: 461 VIRLNESEILGKLARVLEVD 480
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Length = 173
Score = 31.7 bits (73), Expect = 0.25
Identities = 9/50 (18%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 302 LDETLFTVMERIVRAEVHRLVVVDED-DHVLGVLSLSDILVYLVLKPSDD 350
+D+ T+ +++ A V D V+G+ D++ L+ +
Sbjct: 53 IDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEGRVR 102
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural
genomics, midwest center for structural genomics; HET:
AMP; 1.53A {Pseudomonas syringae}
Length = 136
Score = 30.9 bits (71), Expect = 0.35
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDED-DHVLGVLSLSDILVYLVLKPSDDDIGVDE 356
+T + ++ A R V+ E D VLGVL D+L + LK D V +
Sbjct: 21 TQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLI-LKADGDSDDVKK 74
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A*
1nf7_A* 1b3o_A* 1nfb_A*
Length = 514
Score = 31.4 bits (72), Expect = 0.65
Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 26/130 (20%)
Query: 133 GMLTITDFIKILQMYYTSSSITMEELEEHKLETNLIDYKIHRLPVIDE---MGNVLYILT 189
G ITD + + S S T+ ++ E K+ + +P+ + ++ I+T
Sbjct: 113 GF--ITDPVVL------SPSHTVGDVLEAKMR-----HGFSGIPITETGTMGSKLVGIVT 159
Query: 190 HKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETVAEETSIIHALRKFLERRVSAL 249
R + FL D L ++ + + ++ A + L
Sbjct: 160 S-RDIDFL--AEKDHTTL------LSEV-MTPRIELVVAPAGVTLKEANEILQRSKKGKL 209
Query: 250 PMTDSEGHLV 259
P+ + LV
Sbjct: 210 PIVNDCDELV 219
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella
oneidensis}
Length = 172
Score = 30.1 bits (69), Expect = 0.67
Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 302 LDETLFTVMERIVRAEVHRLVVVDED-DHVLGVLSLSDILVYLV 344
L+ L + ++++ R V + D ++G++S +L +
Sbjct: 59 LNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESI 102
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus
RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio
parahaemolyticus}
Length = 130
Score = 29.7 bits (68), Expect = 0.81
Identities = 6/51 (11%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDED-DHVLGVLSLSDILVYLVLKPSDDDI 352
T+ +++ R +V E D+++G + ++ +
Sbjct: 24 TMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSGQKQL 74
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup
B}
Length = 156
Score = 29.0 bits (66), Expect = 1.8
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 302 LDETLFTVMERIVRAEVHRLVVVDED-DHVLGVLSLSDILVYLVLKPSDDDI 352
++++ + ++ R V+ ED D VLG+L D+L Y+ P +
Sbjct: 55 ENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYM-FNPEQFHL 105
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP,
structural genomics, PSI-2, protein S initiative; HET:
MSE AMP; 2.00A {Bordetella parapertussis}
Length = 129
Score = 28.5 bits (65), Expect = 2.0
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 303 DETLFTVMERIVRAEVHRLVVVDED-DHVLGVLSLSDILVYLVLKPSD 349
+ L ++ I+ R V ++D D+++G+L D+L Y++ D
Sbjct: 23 SQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALD 70
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI,
MCSG, STR genomics, midwest center for structural
genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Length = 130
Score = 28.2 bits (64), Expect = 2.3
Identities = 5/50 (10%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 302 LDETLFTVMERIVRAEVHRLVVVDED-DHVLGVLSLSDILVYLVLKPSDD 350
+++ +++ ++ + R+V+ + D + +L + + + K
Sbjct: 19 INDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFT 68
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor,
protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A
3v5y_A 3v5z_A
Length = 160
Score = 28.4 bits (63), Expect = 2.7
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 185 LYILTHKRILRFLFLYINDLPKPSFLNKTLRDLKIGTYENVETV------AEETSIIHAL 238
++ H R+ + + LY + L K +F N + + E II L
Sbjct: 10 VFTAPHWRMKQLVGLYCDKLSKTNFSNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLL 69
Query: 239 RKFLERRVSALPMTDSEGHLVDIFAKFDVINLAAEKTYTNLDV 281
++R + S+ L ++ + F+ + Y L+
Sbjct: 70 ----QQRSQTIYNVHSDNKLSEMLSLFEKGLKNVKNEYEQLNY 108
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics,
protein structur initiative, midwest center for
structural genomics; 2.40A {Clostridium difficile 630}
Length = 148
Score = 27.8 bits (63), Expect = 4.3
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 302 LDETLFTVMERIVRAEVHRLVVVDED-DHVLGVLSLSDILVYLV 344
++ ++ + V R V ++ D +LG + + D+ +
Sbjct: 40 ESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKI 83
>1vhs_A Similar to phosphinothricin acetyltransferase; structural genomics,
unknown function; 1.80A {Bacillus subtilis} SCOP:
d.108.1.1
Length = 175
Score = 27.5 bits (62), Expect = 5.7
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 303 DETLFTVMERIVRAEVHR-----LVVVDEDDHVLGVLSLSD 338
D T +R+ H V DE+ +V +S
Sbjct: 32 DTEPVTPEDRMEWFSGHTESRPLYVAEDENGNVAAWISFET 72
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 27.5 bits (61), Expect = 7.2
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 52 RGLPVATSF-----LDKIDFADLEK--DGGNQIFVKFFKFHKCYD 89
RGL V SF +DK +LEK GGN F +F + + YD
Sbjct: 68 RGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQEDYD 112
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced
antiviral GTPase, membrane associated, PR binding; 3.50A
{Homo sapiens} PDB: 3zys_B
Length = 608
Score = 27.3 bits (60), Expect = 9.8
Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Query: 153 ITMEELEEHKLETNLIDYKIHRLPVIDEMGNVLYILTHKRILRFLFLYINDLPKPSFLNK 212
ME++ +++ + I + + KRI + L I ++ +
Sbjct: 500 FQMEQIVYGAFQSS--SATDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQ 557
Query: 213 TLRDL--KIGTYENVETVAEETSIIHALRKFLERRVSAL 249
+ + + + + +E S RKFL+ R++ L
Sbjct: 558 LQKAMLQLLQDKDTYSWLLKERSDTSDKRKFLKERLARL 596
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.393
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,350,505
Number of extensions: 397681
Number of successful extensions: 1203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1020
Number of HSP's successfully gapped: 152
Length of query: 405
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 309
Effective length of database: 4,021,377
Effective search space: 1242605493
Effective search space used: 1242605493
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)