Query psy7446
Match_columns 340
No_of_seqs 271 out of 1695
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 18:31:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j21_g 50S ribosomal protein L 78.4 0.83 2.8E-05 29.6 1.4 29 153-181 12-40 (51)
2 2ayj_A 50S ribosomal protein L 77.7 1.7 6E-05 28.5 2.8 29 153-181 17-45 (56)
3 2dkt_A Ring finger and CHY zin 60.6 3.3 0.00011 32.9 1.6 43 153-195 81-127 (143)
4 1y02_A CARP2, FYVE-ring finger 59.8 2.6 8.7E-05 32.6 0.8 39 137-178 4-44 (120)
5 1z2q_A LM5-1; membrane protein 56.8 8.1 0.00028 27.5 3.0 26 154-179 20-47 (84)
6 1vfy_A Phosphatidylinositol-3- 54.0 4.5 0.00016 28.0 1.2 24 156-179 12-37 (73)
7 1x4u_A Zinc finger, FYVE domai 53.8 6.6 0.00022 28.0 2.1 23 156-178 15-39 (84)
8 1wfl_A Zinc finger protein 216 52.1 10 0.00034 26.5 2.7 40 154-194 24-68 (74)
9 2yw8_A RUN and FYVE domain-con 50.4 7.1 0.00024 27.7 1.8 25 155-179 19-45 (82)
10 1joc_A EEA1, early endosomal a 50.1 5.9 0.0002 30.7 1.4 24 156-179 70-95 (125)
11 1dvp_A HRS, hepatocyte growth 49.6 5.8 0.0002 33.8 1.4 24 156-179 162-187 (220)
12 2cr8_A MDM4 protein; ZF-ranbp 47.3 7.1 0.00024 25.0 1.2 22 156-177 12-33 (53)
13 1wfk_A Zinc finger, FYVE domai 45.2 8.3 0.00028 27.8 1.5 23 156-178 10-34 (88)
14 2c6a_A Ubiquitin-protein ligas 43.5 8.7 0.0003 24.1 1.1 24 154-177 12-35 (46)
15 3zyq_A Hepatocyte growth facto 42.1 8.2 0.00028 33.1 1.2 24 156-179 165-190 (226)
16 3t7l_A Zinc finger FYVE domain 40.8 10 0.00036 27.4 1.4 25 155-179 20-46 (90)
17 1wg2_A Zinc finger (AN1-like) 35.8 38 0.0013 22.8 3.4 42 152-194 12-58 (64)
18 2dkt_A Ring finger and CHY zin 33.4 7.2 0.00025 30.9 -0.5 32 156-187 102-136 (143)
19 3u5e_m 60S ribosomal protein L 32.3 16 0.00056 28.0 1.4 26 153-178 91-118 (128)
20 1wfh_A Zinc finger (AN1-like) 31.7 49 0.0017 22.2 3.5 41 153-194 13-58 (64)
21 1wil_A KIAA1045 protein; ring 30.7 50 0.0017 23.6 3.5 28 152-179 12-39 (89)
22 2jrp_A Putative cytoplasmic pr 26.7 20 0.00068 25.4 0.9 22 155-177 18-39 (81)
23 1x4w_A Hypothetical protein FL 22.8 38 0.0013 23.0 1.7 42 153-195 13-62 (67)
24 3mpx_A FYVE, rhogef and PH dom 22.3 19 0.00064 33.7 0.0 25 155-179 375-401 (434)
25 1twf_L ABC10-alpha, DNA-direct 21.8 42 0.0014 23.0 1.8 27 154-180 27-56 (70)
No 1
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=78.39 E-value=0.83 Score=29.62 Aligned_cols=29 Identities=28% Similarity=0.515 Sum_probs=24.4
Q ss_pred cCccccccccccCCCCCccCccccccccc
Q psy7446 153 EGWYFCAPCESVAPPRAYHCHVCNTCILK 181 (340)
Q Consensus 153 ~~~~~C~~C~~~kP~Rs~HC~~C~~CV~~ 181 (340)
.....|..|....|+++..|+.||.--+|
T Consensus 12 ~~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 12 FKKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SSEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred hCCccCCCCCCcCCCCceecCCCCCcccc
Confidence 35689999999999999999999875443
No 2
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=77.74 E-value=1.7 Score=28.51 Aligned_cols=29 Identities=28% Similarity=0.556 Sum_probs=24.2
Q ss_pred cCccccccccccCCCCCccCccccccccc
Q psy7446 153 EGWYFCAPCESVAPPRAYHCHVCNTCILK 181 (340)
Q Consensus 153 ~~~~~C~~C~~~kP~Rs~HC~~C~~CV~~ 181 (340)
-....|..|..+-|+|+.-|+.||..-+|
T Consensus 17 ~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 17 FLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred hchhhhccccCcCCcccccccCCCCCCCC
Confidence 35689999999999999999998865443
No 3
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=60.62 E-value=3.3 Score=32.90 Aligned_cols=43 Identities=30% Similarity=0.837 Sum_probs=31.0
Q ss_pred cCccccccccccCCCC-CccCccccccccc--cc-eeccccccccch
Q psy7446 153 EGWYFCAPCESVAPPR-AYHCHVCNTCILK--RD-HHCTFSACCIGH 195 (340)
Q Consensus 153 ~~~~~C~~C~~~kP~R-s~HC~~C~~CV~~--~D-HHC~wi~nCIG~ 195 (340)
-+..+|.+|+.+.+.+ ..||..||.|..+ -| -||.--|.|+..
T Consensus 81 f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~ 127 (143)
T 2dkt_A 81 FGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTT 127 (143)
T ss_dssp SCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEEG
T ss_pred ceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeecc
Confidence 3557899999886554 4889999998886 22 378777777643
No 4
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=59.85 E-value=2.6 Score=32.58 Aligned_cols=39 Identities=18% Similarity=0.388 Sum_probs=16.8
Q ss_pred eeCCCCCCCCCccccccCcccccccccc--CCCCCccCcccccc
Q psy7446 137 MVDTSIHTVMLPSQLREGWYFCAPCESV--APPRAYHCHVCNTC 178 (340)
Q Consensus 137 ~~DPG~~~~~~~~~~~~~~~~C~~C~~~--kP~Rs~HC~~C~~C 178 (340)
.+||++.+-..|+.+. ..|..|... -..|-|||+.||+-
T Consensus 4 ~~~~~~~~~~~Pd~~~---~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 4 YSNPGYSSFPSPTGLE---PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp -------------------CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred cCCCCcccCCcCcccc---CcccCcCCccccccccccCCCCCCe
Confidence 4677776433333333 467777654 34588999999874
No 5
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=56.77 E-value=8.1 Score=27.53 Aligned_cols=26 Identities=27% Similarity=0.570 Sum_probs=18.5
Q ss_pred Ccccccccccc--CCCCCccCccccccc
Q psy7446 154 GWYFCAPCESV--APPRAYHCHVCNTCI 179 (340)
Q Consensus 154 ~~~~C~~C~~~--kP~Rs~HC~~C~~CV 179 (340)
....|..|+.. --.|-|||+.||+-+
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEE
Confidence 34578888765 345789999998743
No 6
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=54.00 E-value=4.5 Score=28.05 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=17.3
Q ss_pred ccccccccc--CCCCCccCccccccc
Q psy7446 156 YFCAPCESV--APPRAYHCHVCNTCI 179 (340)
Q Consensus 156 ~~C~~C~~~--kP~Rs~HC~~C~~CV 179 (340)
..|..|... .-.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 468888764 345789999998743
No 7
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.76 E-value=6.6 Score=28.01 Aligned_cols=23 Identities=17% Similarity=0.509 Sum_probs=17.0
Q ss_pred ccccccccc--CCCCCccCcccccc
Q psy7446 156 YFCAPCESV--APPRAYHCHVCNTC 178 (340)
Q Consensus 156 ~~C~~C~~~--kP~Rs~HC~~C~~C 178 (340)
..|..|+.. --.|-|||+.||+-
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CcCcCcCCccccchhhhhhcCCCcE
Confidence 567778764 44688999999874
No 8
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=52.07 E-value=10 Score=26.45 Aligned_cols=40 Identities=20% Similarity=0.551 Sum_probs=25.2
Q ss_pred CccccccccccCCCCCccCccccc--ccc-c--cceeccccccccc
Q psy7446 154 GWYFCAPCESVAPPRAYHCHVCNT--CIL-K--RDHHCTFSACCIG 194 (340)
Q Consensus 154 ~~~~C~~C~~~kP~Rs~HC~~C~~--CV~-~--~DHHC~wi~nCIG 194 (340)
....|..|+.....-...|+ |+. |-. | =||.|++-..-.|
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~g 68 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAEA 68 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGTS
T ss_pred cCCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhhc
Confidence 45689999876555457788 765 222 2 2888887544433
No 9
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=50.42 E-value=7.1 Score=27.70 Aligned_cols=25 Identities=28% Similarity=0.622 Sum_probs=17.8
Q ss_pred cccccccccc--CCCCCccCccccccc
Q psy7446 155 WYFCAPCESV--APPRAYHCHVCNTCI 179 (340)
Q Consensus 155 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 179 (340)
...|..|... --.|-|||+.||+-+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEE
Confidence 3568888754 345789999998744
No 10
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=50.14 E-value=5.9 Score=30.68 Aligned_cols=24 Identities=25% Similarity=0.598 Sum_probs=17.7
Q ss_pred ccccccccc--CCCCCccCccccccc
Q psy7446 156 YFCAPCESV--APPRAYHCHVCNTCI 179 (340)
Q Consensus 156 ~~C~~C~~~--kP~Rs~HC~~C~~CV 179 (340)
..|..|... --.|-|||+.||+-+
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEE
Confidence 568888764 346889999998743
No 11
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=49.65 E-value=5.8 Score=33.84 Aligned_cols=24 Identities=25% Similarity=0.624 Sum_probs=17.6
Q ss_pred ccccccccc--CCCCCccCccccccc
Q psy7446 156 YFCAPCESV--APPRAYHCHVCNTCI 179 (340)
Q Consensus 156 ~~C~~C~~~--kP~Rs~HC~~C~~CV 179 (340)
..|..|... --.|-|||+.||+-+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 678888754 335789999998744
No 12
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=47.31 E-value=7.1 Score=25.00 Aligned_cols=22 Identities=23% Similarity=0.712 Sum_probs=17.3
Q ss_pred cccccccccCCCCCccCccccc
Q psy7446 156 YFCAPCESVAPPRAYHCHVCNT 177 (340)
Q Consensus 156 ~~C~~C~~~kP~Rs~HC~~C~~ 177 (340)
-.|.+|+..-||--+||..|-.
T Consensus 12 WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 12 WQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp EECSSSCCEECSSCCBCTTTCC
T ss_pred eecccccccCCCccchhHHHHH
Confidence 4588888888888888887754
No 13
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=45.22 E-value=8.3 Score=27.84 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=16.9
Q ss_pred ccccccccc--CCCCCccCcccccc
Q psy7446 156 YFCAPCESV--APPRAYHCHVCNTC 178 (340)
Q Consensus 156 ~~C~~C~~~--kP~Rs~HC~~C~~C 178 (340)
..|..|... .-.|-|||+.||+-
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CCCcCcCCcccCccccccCCCCCCE
Confidence 467788764 34678999999874
No 14
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=43.54 E-value=8.7 Score=24.05 Aligned_cols=24 Identities=29% Similarity=0.944 Sum_probs=19.4
Q ss_pred CccccccccccCCCCCccCccccc
Q psy7446 154 GWYFCAPCESVAPPRAYHCHVCNT 177 (340)
Q Consensus 154 ~~~~C~~C~~~kP~Rs~HC~~C~~ 177 (340)
..-.|.+|+..-||--.||..|-.
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCC
T ss_pred ceEecccccccCCCccchhhHHHh
Confidence 445699999998999889888754
No 15
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=42.13 E-value=8.2 Score=33.08 Aligned_cols=24 Identities=25% Similarity=0.591 Sum_probs=16.6
Q ss_pred ccccccccc--CCCCCccCccccccc
Q psy7446 156 YFCAPCESV--APPRAYHCHVCNTCI 179 (340)
Q Consensus 156 ~~C~~C~~~--kP~Rs~HC~~C~~CV 179 (340)
..|..|... ---|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 578888743 234778999888743
No 16
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=40.83 E-value=10 Score=27.38 Aligned_cols=25 Identities=24% Similarity=0.546 Sum_probs=17.5
Q ss_pred cccccccccc--CCCCCccCccccccc
Q psy7446 155 WYFCAPCESV--APPRAYHCHVCNTCI 179 (340)
Q Consensus 155 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 179 (340)
...|..|... --.|-|||+.||+-+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 3568888754 344789999998743
No 17
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=35.75 E-value=38 Score=22.80 Aligned_cols=42 Identities=21% Similarity=0.550 Sum_probs=25.6
Q ss_pred ccCccccccccccCCCCCccCccccc--cc---cccceeccccccccc
Q psy7446 152 REGWYFCAPCESVAPPRAYHCHVCNT--CI---LKRDHHCTFSACCIG 194 (340)
Q Consensus 152 ~~~~~~C~~C~~~kP~Rs~HC~~C~~--CV---~~~DHHC~wi~nCIG 194 (340)
+.....|..|+.....-.-.| .|+. |- .--||.|++-..-.|
T Consensus 12 ~~~~~rC~~C~kkvgl~~f~C-rCg~~FC~~HR~~e~H~C~fDyk~~g 58 (64)
T 1wg2_A 12 VRPNNRCFSCNKKVGVMGFKC-KCGSTFCGSHRYPEKHECSFDFKEVG 58 (64)
T ss_dssp SCCSCSCTTTCCCCTTSCEEC-TTSCEECSSSCSSTTTTCCCCCSCSC
T ss_pred CCcCCcChhhCCcccccCeEe-ecCCEecccCCCccccCCCcchhHHh
Confidence 344578999987655445677 4654 22 223899987554444
No 18
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=33.35 E-value=7.2 Score=30.94 Aligned_cols=32 Identities=31% Similarity=0.788 Sum_probs=23.7
Q ss_pred cccccccccCCCCCccCccccccccc--cc-eecc
Q psy7446 156 YFCAPCESVAPPRAYHCHVCNTCILK--RD-HHCT 187 (340)
Q Consensus 156 ~~C~~C~~~kP~Rs~HC~~C~~CV~~--~D-HHC~ 187 (340)
..|..|.+-+..--.||..||.|+.. .| |.|.
T Consensus 102 ~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 102 ESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp TTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred CCCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 45666666667778999999999653 44 7774
No 19
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=32.27 E-value=16 Score=28.00 Aligned_cols=26 Identities=31% Similarity=0.666 Sum_probs=22.3
Q ss_pred cCccccccccccCCCCCccCc--ccccc
Q psy7446 153 EGWYFCAPCESVAPPRAYHCH--VCNTC 178 (340)
Q Consensus 153 ~~~~~C~~C~~~kP~Rs~HC~--~C~~C 178 (340)
-....|.+|..+-|+|+..|+ .||..
T Consensus 91 ~~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 91 CDKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp TSCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred cceEeeccccccCCchhhccchhhCCCc
Confidence 356899999999999999999 48764
No 20
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=31.71 E-value=49 Score=22.25 Aligned_cols=41 Identities=27% Similarity=0.571 Sum_probs=25.7
Q ss_pred cCccccccccccCCCCCccCccccc--ccc-c--cceeccccccccc
Q psy7446 153 EGWYFCAPCESVAPPRAYHCHVCNT--CIL-K--RDHHCTFSACCIG 194 (340)
Q Consensus 153 ~~~~~C~~C~~~kP~Rs~HC~~C~~--CV~-~--~DHHC~wi~nCIG 194 (340)
.....|..|+.....-.-.|+ |+. |-. | -||.|++-..-.|
T Consensus 13 ~~~~rC~~C~kkvgl~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyk~~g 58 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLTGFMCR-CGTTFCGSHRYPEVHGCTFDFKSAG 58 (64)
T ss_dssp SSCCCCTTTCCCCCTTCEECS-SSCEECTTTCSTTTTTCCCCCSCCC
T ss_pred CcCCcChhhCCccCccCEEee-cCCEeccccCCcccCCCCchhhHHH
Confidence 345679999877555567784 654 222 2 3888987554444
No 21
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=30.68 E-value=50 Score=23.57 Aligned_cols=28 Identities=21% Similarity=0.506 Sum_probs=22.4
Q ss_pred ccCccccccccccCCCCCccCccccccc
Q psy7446 152 REGWYFCAPCESVAPPRAYHCHVCNTCI 179 (340)
Q Consensus 152 ~~~~~~C~~C~~~kP~Rs~HC~~C~~CV 179 (340)
......|..|+.+--.--.-|++|+|+-
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~Rvf 39 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRVF 39 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSCC
T ss_pred CCCCcccCccccccccceeccccccccc
Confidence 3466799999988877777899999863
No 22
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=26.74 E-value=20 Score=25.43 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=14.3
Q ss_pred ccccccccccCCCCCccCccccc
Q psy7446 155 WYFCAPCESVAPPRAYHCHVCNT 177 (340)
Q Consensus 155 ~~~C~~C~~~kP~Rs~HC~~C~~ 177 (340)
...|..|+..-++.+ .|+.|++
T Consensus 18 ~~~C~~C~~~~~~~a-fCPeCgq 39 (81)
T 2jrp_A 18 TAHCETCAKDFSLQA-LCPDCRQ 39 (81)
T ss_dssp EEECTTTCCEEEEEE-ECSSSCS
T ss_pred ceECccccccCCCcc-cCcchhh
Confidence 445777776666666 6776665
No 23
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.84 E-value=38 Score=23.04 Aligned_cols=42 Identities=24% Similarity=0.539 Sum_probs=25.3
Q ss_pred cCccccccccccCCCCC---ccCccccc--cc-ccc--ceeccccccccch
Q psy7446 153 EGWYFCAPCESVAPPRA---YHCHVCNT--CI-LKR--DHHCTFSACCIGH 195 (340)
Q Consensus 153 ~~~~~C~~C~~~kP~Rs---~HC~~C~~--CV-~~~--DHHC~wi~nCIG~ 195 (340)
.....|..|+.....-. ..| .|+. |- .|+ ||.|.+-..-.|.
T Consensus 13 ~~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~HRy~e~H~C~fDyk~~gr 62 (67)
T 1x4w_A 13 KSRRRCFQCQTKLELVQQELGSC-RCGYVFCMLHRLPEQHDCTFDHMGRGS 62 (67)
T ss_dssp SCTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTTTCSTGGGTCSSCSSCSSC
T ss_pred ccCCcchhhCCeecccccCceEe-cCCCEehhccCCccccCCccccccccc
Confidence 34467888887766542 567 4554 32 233 8999876554443
No 24
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=22.25 E-value=19 Score=33.71 Aligned_cols=25 Identities=28% Similarity=0.703 Sum_probs=0.0
Q ss_pred cccccccccc--CCCCCccCccccccc
Q psy7446 155 WYFCAPCESV--APPRAYHCHVCNTCI 179 (340)
Q Consensus 155 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 179 (340)
...|..|... .-.|-|||+.||+.+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~ 401 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIV 401 (434)
T ss_dssp ---------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEe
Confidence 3568888753 234679999998743
No 25
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=21.82 E-value=42 Score=23.00 Aligned_cols=27 Identities=37% Similarity=0.679 Sum_probs=18.8
Q ss_pred Ccccccccccc---CCCCCccCcccccccc
Q psy7446 154 GWYFCAPCESV---APPRAYHCHVCNTCIL 180 (340)
Q Consensus 154 ~~~~C~~C~~~---kP~Rs~HC~~C~~CV~ 180 (340)
-...|..|... ++..+-||+.|+.-|+
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EEEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 34678888765 4455678999887554
Done!