RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7446
(340 letters)
>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase. This family
includes the well known DHHC zinc binding domain as well
as three of the four conserved transmembrane regions
found in this family of palmitoyltransferase enzymes.
Length = 167
Score = 101 bits (254), Expect = 4e-26
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 13/138 (9%)
Query: 153 EGWYFCAPCESVAPPRAYHCHVCNTCILKRDHHCTFSACCIGHYNHRYFMLFLFYLTVGT 212
+ FC+ C + PPR++HC VCN C+L+ DHHC + CIG NH+YF+LFL YLT+
Sbjct: 39 DELKFCSTCNIIKPPRSHHCRVCNRCVLRFDHHCPWLNNCIGRRNHKYFLLFLLYLTLYL 98
Query: 213 IYATYLNLFFIHNFVSFNWGLLLKIMLPLAFLVFGLDTSTNHVYLIMLLVVMVGSMVSLL 272
I L+ +++ + I+ + +I+L++ + +
Sbjct: 99 ILLLVLSFYYLVYLIRNIELFFFLIL-------------SLFSSIILLVLSLFFLLFLSF 145
Query: 273 LLVYHFGLIQDGVLTFER 290
LL +H LI + T+E
Sbjct: 146 LLFFHLYLILKNITTYEY 163
>gnl|CDD|227598 COG5273, COG5273, Uncharacterized protein containing DHHC-type Zn
finger [General function prediction only].
Length = 309
Score = 84.0 bits (208), Expect = 2e-18
Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 22/226 (9%)
Query: 84 FVFLVLIVPLVFWFVVFIVIPATYPVFGFWQVYHILFST-FLLFQIVTNYVYVIMVDTSI 142
F+ L L+ +V + ++ IV + V IL F ++ + + + ++
Sbjct: 31 FIGLFLLSRIVVYTLLVIVKSLSLVVLFIILFIVILVLASFSYLLLLVSDPGYLGENITL 90
Query: 143 HTV--MLPSQLREGWY----FCAPCESVAPPRAYHCHVCNTCILKRDHHCTFSACCIGHY 196
+ L +G + FC+ C PPR++HC +CN C+LK DHHC + C+G
Sbjct: 91 SGYRETISRLLDDGKFGTENFCSTCNIYKPPRSHHCSICNRCVLKFDHHCPWINNCVGFR 150
Query: 197 NHRYFMLFLFYLTVGTIYATYL------NLFFIHNFVSFNWGLLLKIMLPLAFLVFGLDT 250
N+R+F FL Y + + +F I + S L+ L + F
Sbjct: 151 NYRFFYQFLLYTILVALVVLLSTAYYIAGIFSIRHDTSLAICFLIFGCSLLGVVFF---- 206
Query: 251 STNHVYLIMLLVVMVGSMVSLLLLVYHFGLIQDGVLTFERNRKLKG 296
+ +LL+ + ++ L F I G T E +
Sbjct: 207 ----IITTLLLLF-LIYLILNNLTTIEFIQISRGGSTLEFFPLCRE 247
>gnl|CDD|214490 smart00050, DISIN, Homologues of snake disintegrins. Snake
disintegrins inhibit the binding of ligands to integrin
receptors. They contain a 'RGD' sequence, identical to
the recognition site of many adhesion proteins.
Molecules containing both disintegrin and
metalloprotease domains are known as ADAMs.
Length = 75
Score = 29.6 bits (67), Expect = 0.49
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 166 PPRAYHCHVCN--TCILKRDHHCTFSACC 192
P+ C+ TC LK C CC
Sbjct: 10 SPKECTDPCCDPATCKLKPGAQCASGPCC 38
>gnl|CDD|221041 pfam11241, DUF3043, Protein of unknown function (DUF3043). Some
members in this family of proteins with unknown function
are annotated as membrane proteins. This cannot be
confirmed.
Length = 168
Score = 30.7 bits (70), Expect = 0.65
Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 19/98 (19%)
Query: 222 FIHNFVSFNWGLLLKIMLPLAFLVFGLDTSTNHVYLIMLLVVMVGSMVSLLLLVYHFGLI 281
++ ++V L + +P+A +V L+++ + + SL +LV ++
Sbjct: 66 YVRDYVDSRRNLG-EFFMPVALVVL---------VLMLVPNPALQLIASLAMLVLILVMV 115
Query: 282 QDGVLTFERNRKLKGYNAGLKA---NIEQVFGIRWYLV 316
DG+L R ++ + + E G+ WY
Sbjct: 116 IDGILLGRRVKRR------VAEKFPDNESERGLGWYAA 147
>gnl|CDD|216929 pfam02207, zf-UBR, Putative zinc finger in N-recognin (UBR box).
This region is found in E3 ubiquitin ligases that
recognise N-recognins.
Length = 71
Score = 28.1 bits (63), Expect = 1.4
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 12/41 (29%)
Query: 169 AYHCHVCN---TCILKRDHHCT--FSACCIGHYNHRYFMLF 204
Y C C+ TC++ C FS C H H LF
Sbjct: 13 VYRCLTCSLDPTCVI-----CYECFSISC--HKGHDVVELF 46
>gnl|CDD|177184 MTH00125, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 98
Score = 28.3 bits (64), Expect = 1.9
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 234 LLKIMLPLAFLVFGLDTSTNHVYLIMLLVVMVGSMVSLLLL 274
L AF++ L S + +L+ L+ + M+SL ++
Sbjct: 3 PTHFSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIM 43
>gnl|CDD|216039 pfam00643, zf-B_box, B-box zinc finger.
Length = 42
Score = 26.3 bits (58), Expect = 3.1
Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 11/47 (23%)
Query: 158 CAPCESVAPPRAYHCHVCNTCILKRDHHCTFSACCI-GHYNHRYFML 203
C E P +C C + C C + GH H L
Sbjct: 6 CPEHEE--KPLELYCEDCQQLL------CEE--CALSGHKGHTVVPL 42
>gnl|CDD|226365 COG3846, TrbL, Type IV secretory pathway, TrbL components
[Intracellular trafficking and secretion].
Length = 452
Score = 29.3 bits (66), Expect = 3.6
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 200 YFMLFLFYLTVGTIYATYLNLFFIHNFVS----FNWGLLLKIMLPLAFLVFGLDTSTNHV 255
+ +L ++ +L F+ +S L+ + L + + V
Sbjct: 196 FILLGF----GLSLETLFLAERFLKTVISVGEKLMALALIIGIGSLFLIQQTAGFLNSSV 251
Query: 256 YLIMLLVVMVGSMVSLLLLVYHFGLIQ 282
I+ L + + S+V L L Y +
Sbjct: 252 TKIISLAIYLASLVLLALFNYGPPIAA 278
>gnl|CDD|236772 PRK10833, PRK10833, putative assembly protein; Provisional.
Length = 617
Score = 29.1 bits (66), Expect = 4.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 257 LIMLLVVMVGSMVSLLLLV 275
L++LLVV+V + +L+LLV
Sbjct: 8 LMILLVVLVAGLSALVLLV 26
>gnl|CDD|227130 COG4792, EscU, Type III secretory pathway, component EscU
[Intracellular trafficking and secretion].
Length = 349
Score = 27.8 bits (62), Expect = 8.6
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 219 NLFFIHNFVSFNWGLLLKIMLPLAFLVFGLDTSTNHVYL----IMLLVVMVGSMVSLLLL 274
+F + + V LL ++L L F + +YL + + +V ++ LL +
Sbjct: 130 RIFSLRSVVELLKSLLKVVVLSLIFWFMLHGYANTFLYLPGCGLYCALPVVSFLLRLLWV 189
Query: 275 VYHFGLIQDGVL--TFERNRKLK 295
G + V F+R + LK
Sbjct: 190 GVAVGYLVFSVADYAFQRYQILK 212
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.332 0.145 0.482
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,880,498
Number of extensions: 1785587
Number of successful extensions: 3761
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3693
Number of HSP's successfully gapped: 266
Length of query: 340
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 242
Effective length of database: 6,590,910
Effective search space: 1595000220
Effective search space used: 1595000220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 59 (26.5 bits)