RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7446
(340 letters)
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, structural genomics, NPPSFA; NMR {Mus musculus}
SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Length = 143
Score = 35.8 bits (82), Expect = 0.006
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 156 YFCAPCESVAPPRAYHCHVCNTCI---LKRDHHC 186
C C +HC CN C+ L+ H C
Sbjct: 102 ESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKC 135
Score = 31.2 bits (70), Expect = 0.22
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 152 REGWYFCAPCESVAPPRA-YHCHVCNTCILKRDH---HCTFSACCIGHY---NHR 199
G Y+C+ C + YHC C C + HC C+ H+
Sbjct: 80 LFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHK 134
>1tej_A Disintegrin chain A; cryatal structure, heterodimer, protein
binding; 1.90A {Echis carinatus} SCOP: g.20.1.1 PDB:
1rmr_A 1tej_B 1z1x_A
Length = 64
Score = 30.1 bits (68), Expect = 0.15
Identities = 6/20 (30%), Positives = 8/20 (40%), Gaps = 2/20 (10%)
Query: 175 CN--TCILKRDHHCTFSACC 192
C+ C + HC CC
Sbjct: 7 CDPVICKPRDGEHCISGPCC 26
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP:
g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R
1d4v_A
Length = 130
Score = 30.8 bits (69), Expect = 0.29
Identities = 10/51 (19%), Positives = 13/51 (25%), Gaps = 12/51 (23%)
Query: 158 CAPCE-----SVAPPRAYHCHVCNTC--ILKRDHHCTFS-----ACCIGHY 196
C C+ S C C C CT + C G +
Sbjct: 41 CISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTF 91
>1j2l_A Disintegrin triflavin; RGD motif, trimestatin, snake venom, toxin;
1.70A {Trimeresurus flavoviridis} SCOP: g.20.1.1 PDB:
1fvl_A 2pji_A 1n4y_A 2pjf_A 2pjg_A 1q7i_A 1q7j_A 1l3x_A
3c05_A 3c05_B
Length = 70
Score = 28.9 bits (65), Expect = 0.41
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 2/20 (10%)
Query: 175 CN--TCILKRDHHCTFSACC 192
C+ TC L+ C CC
Sbjct: 14 CDAATCKLRPGAQCADGLCC 33
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine,
signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1
g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Length = 162
Score = 30.4 bits (68), Expect = 0.53
Identities = 12/54 (22%), Positives = 16/54 (29%), Gaps = 13/54 (24%)
Query: 158 CAPCE----SVAPPRAYHCHVCNTCILKRDHH----CTFSA-----CCIGHYNH 198
C CE + + HC C+ C + CT C Y H
Sbjct: 42 CRECESGSFTASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTVCGCRKNQYRH 95
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic
antibody, FAB fragment, antibody-receptor complex,
cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo
sapiens} PDB: 3thm_F*
Length = 156
Score = 30.1 bits (67), Expect = 0.64
Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 14/53 (26%)
Query: 158 CAPCE-----SVAPPRAYHCHVCNTCILKRDHH----CTFSA-----CCIGHY 196
C PC+ + + C C C CT + C +
Sbjct: 66 CVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNFF 118
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.83
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 12/30 (40%)
Query: 31 ERN--RKLKG----Y---NA---GLKANIE 48
E+ +KL+ Y +A +KA +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
Score = 29.5 bits (65), Expect = 0.83
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 12/30 (40%)
Query: 289 ERN--RKLKG----Y---NA---GLKANIE 306
E+ +KL+ Y +A +KA +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Mus musculus} SCOP:
g.50.1.1
Length = 88
Score = 28.2 bits (63), Expect = 1.2
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 8/30 (26%)
Query: 171 HCHVCNTC--ILKRDHHC-----TF-SACC 192
C+ C + K+++ C F + C
Sbjct: 11 RCYGCAVKFTLFKKEYGCKNCGRAFCNGCL 40
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 29.8 bits (66), Expect = 1.7
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 160 PCESVAPPRAYHCHVCNTCILKRDHHCTFSACC 192
C + A C C L +D C+ CC
Sbjct: 227 DCGTPAECVLEGAECCKKCTLTQDSQCSDGLCC 259
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein
VPS27; endosome maturation, intracellular trafficking;
1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Length = 73
Score = 26.9 bits (60), Expect = 2.2
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 162 ESVAPPR---AYHCHVCNTC--ILKRDHHC 186
+S P + C +C+ +L R HHC
Sbjct: 1 DSKTPADWIDSDACMICSKKFSLLNRKHHC 30
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania
major}
Length = 84
Score = 26.2 bits (58), Expect = 4.7
Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 8/33 (24%)
Query: 162 ESVAPPR------AYHCHVCNTC--ILKRDHHC 186
E + A C+ C R HHC
Sbjct: 8 EKQSKGYWQEDEDAPACNGCGCVFTTTVRRHHC 40
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics
consortium, SGC, lipid BIND protein, transport protein;
1.09A {Homo sapiens}
Length = 90
Score = 26.3 bits (58), Expect = 4.8
Identities = 8/20 (40%), Positives = 9/20 (45%), Gaps = 2/20 (10%)
Query: 169 AYHCHVCNTC--ILKRDHHC 186
A +C C KR HHC
Sbjct: 20 APNCMNCQVKFTFTKRRHHC 39
>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling
protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB:
3nvq_B*
Length = 476
Score = 27.6 bits (60), Expect = 6.9
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 127 QIVTNYVYVIMVDTSIHTVMLPSQLREGWYFCAPCESVAPPRAYHCHV---CNTCILKRD 183
+Y I +T + ++P ++ + + + V R +C+ C+ C+ D
Sbjct: 376 SNCPEVIYEIKEETPVFYKLVPDPVKNIYIYLTAGKEVRRIRVANCNKHKSCSECLTATD 435
Query: 184 HHC 186
HC
Sbjct: 436 PHC 438
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein;
1.91A {Glycine max}
Length = 403
Score = 27.4 bits (60), Expect = 7.6
Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 10/53 (18%)
Query: 155 WYFCAPCE---SVAPPR-------AYHCHVCNTCILKRDHHCTFSACCIGHYN 197
W C + P + H C +C C + C + N
Sbjct: 48 WVNCEQQYSSKTYQAPFCHSTQCSRANTHQCLSCPAASRPGCHKNTCGLMSTN 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.332 0.145 0.482
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,360,888
Number of extensions: 316488
Number of successful extensions: 898
Number of sequences better than 10.0: 1
Number of HSP's gapped: 896
Number of HSP's successfully gapped: 30
Length of query: 340
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 246
Effective length of database: 4,077,219
Effective search space: 1002995874
Effective search space used: 1002995874
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 58 (26.1 bits)